Query psy2736
Match_columns 211
No_of_seqs 222 out of 1581
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 23:53:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00815 sulP high affinity s 100.0 3.6E-42 7.8E-47 314.5 16.9 203 1-203 287-563 (563)
2 PRK11660 putative transporter; 100.0 1.1E-41 2.3E-46 311.6 16.7 205 1-209 307-565 (568)
3 COG0659 SUL1 Sulfate permease 100.0 1.1E-40 2.4E-45 302.1 16.6 208 1-208 276-548 (554)
4 KOG0236|consensus 100.0 5.5E-38 1.2E-42 289.9 14.2 209 1-209 355-645 (665)
5 PF00916 Sulfate_transp: Sulfa 99.8 3.3E-21 7.1E-26 162.1 3.4 68 1-68 175-258 (280)
6 TIGR02886 spore_II_AA anti-sig 99.8 2.2E-18 4.8E-23 124.7 10.7 97 107-203 7-105 (106)
7 cd07041 STAS_RsbR_RsbS_like Su 99.8 2.9E-18 6.3E-23 124.7 10.5 97 108-204 10-109 (109)
8 PF01740 STAS: STAS domain; I 99.8 1.7E-18 3.6E-23 127.4 7.2 96 108-203 9-117 (117)
9 cd06844 STAS Sulphate Transpor 99.7 5E-17 1.1E-21 116.5 9.0 87 107-193 7-94 (100)
10 TIGR00377 ant_ant_sig anti-ant 99.6 1.5E-15 3.2E-20 109.9 8.8 96 107-202 11-108 (108)
11 cd07042 STAS_SulP_like_sulfate 99.5 5.2E-14 1.1E-18 101.1 9.9 87 106-192 7-95 (107)
12 cd07043 STAS_anti-anti-sigma_f 99.5 7.4E-14 1.6E-18 98.9 9.9 90 108-197 8-98 (99)
13 COG1366 SpoIIAA Anti-anti-sigm 99.5 6.3E-13 1.4E-17 97.9 10.0 99 110-208 15-115 (117)
14 PF13466 STAS_2: STAS domain 99.4 3.8E-12 8.3E-17 87.3 8.0 79 112-191 1-79 (80)
15 TIGR03173 pbuX xanthine permea 98.7 2.6E-08 5.6E-13 88.3 5.0 60 6-66 254-332 (406)
16 TIGR00801 ncs2 uracil-xanthine 98.5 1.3E-07 2.8E-12 84.1 4.0 62 7-68 271-350 (415)
17 COG3113 Predicted NTP binding 98.4 2.2E-06 4.9E-11 60.2 7.2 83 111-194 13-95 (99)
18 PRK10720 uracil transporter; P 97.9 1E-05 2.2E-10 72.3 3.4 61 4-68 259-341 (428)
19 TIGR03616 RutG pyrimidine util 97.5 5.6E-05 1.2E-09 67.6 2.6 63 2-68 275-361 (429)
20 PRK11412 putative uracil/xanth 96.3 0.0045 9.7E-08 55.5 4.1 63 6-68 276-356 (433)
21 PF00860 Xan_ur_permease: Perm 96.2 0.0055 1.2E-07 54.1 4.1 65 4-68 266-348 (389)
22 PF11964 SpoIIAA-like: SpoIIAA 95.7 0.014 3E-07 41.6 3.6 101 109-209 2-109 (109)
23 PF14213 DUF4325: Domain of un 95.5 0.096 2.1E-06 35.0 7.1 67 122-189 2-71 (74)
24 COG2233 UraA Xanthine/uracil p 94.1 0.024 5.2E-07 50.8 1.5 64 5-68 280-361 (451)
25 TIGR00843 benE benzoate transp 94.0 0.097 2.1E-06 46.3 5.1 55 1-55 250-309 (395)
26 PF13344 Hydrolase_6: Haloacid 92.2 0.25 5.4E-06 35.1 4.0 69 141-209 1-76 (101)
27 TIGR00834 ae anion exchange pr 89.9 0.4 8.8E-06 46.7 4.2 62 7-68 692-786 (900)
28 COG2252 Xanthine/uracil/vitami 89.8 0.55 1.2E-05 42.1 4.8 63 5-68 282-359 (436)
29 PF03594 BenE: Benzoate membra 89.5 0.97 2.1E-05 39.8 5.9 42 1-42 234-275 (378)
30 cd07023 S49_Sppa_N_C Signal pe 83.1 7.5 0.00016 31.0 7.7 65 109-174 2-70 (208)
31 PF09345 DUF1987: Domain of un 82.7 6.7 0.00014 27.8 6.3 65 110-175 10-81 (99)
32 KOG1172|consensus 82.6 1.7 3.6E-05 42.0 4.1 60 9-68 670-762 (876)
33 KOG3040|consensus 80.9 2.4 5.1E-05 34.5 3.8 72 139-210 8-86 (262)
34 PF00955 HCO3_cotransp: HCO3- 80.1 0.55 1.2E-05 43.0 0.0 34 8-41 374-407 (510)
35 TIGR01457 HAD-SF-IIA-hyp2 HAD- 79.9 4.1 8.9E-05 33.6 5.2 71 139-209 2-79 (249)
36 COG5439 Uncharacterized conser 79.3 4.1 8.9E-05 28.6 4.1 51 130-180 38-89 (112)
37 PRK10444 UMP phosphatase; Prov 78.6 4.8 0.0001 33.3 5.2 71 139-209 2-79 (248)
38 TIGR00640 acid_CoA_mut_C methy 78.1 26 0.00055 26.1 8.7 90 109-209 31-125 (132)
39 PLN02645 phosphoglycolate phos 78.1 11 0.00025 32.1 7.5 72 138-209 28-106 (311)
40 TIGR00706 SppA_dom signal pept 77.9 16 0.00035 29.2 7.9 63 109-174 2-65 (207)
41 cd00394 Clp_protease_like Case 77.2 8.9 0.00019 29.1 6.0 56 111-167 1-57 (161)
42 cd07019 S49_SppA_1 Signal pept 76.3 15 0.00031 29.5 7.3 55 121-176 21-76 (211)
43 PHA03231 glycoprotein BALF4; P 74.3 3.3 7.2E-05 40.1 3.4 58 4-68 652-715 (829)
44 PRK04596 minC septum formation 71.5 28 0.0006 29.0 7.8 71 119-191 26-102 (248)
45 TIGR01452 PGP_euk phosphoglyco 71.4 10 0.00022 31.7 5.5 71 139-209 3-80 (279)
46 PF06953 ArsD: Arsenical resis 71.3 14 0.00031 27.3 5.5 54 155-208 25-99 (123)
47 COG0647 NagD Predicted sugar p 71.3 14 0.00031 31.0 6.2 72 139-210 9-88 (269)
48 cd07022 S49_Sppa_36K_type Sign 70.2 26 0.00057 28.1 7.4 50 122-173 26-76 (214)
49 TIGR01459 HAD-SF-IIA-hyp4 HAD- 70.1 19 0.00042 29.3 6.7 70 138-207 8-84 (242)
50 PF08113 CoxIIa: Cytochrome c 69.8 7.9 0.00017 21.7 2.9 23 56-78 5-27 (34)
51 COG3715 ManY Phosphotransferas 69.1 6.2 0.00014 33.1 3.5 61 7-68 53-113 (265)
52 TIGR01458 HAD-SF-IIA-hyp3 HAD- 69.0 11 0.00024 31.2 5.1 71 139-209 2-83 (257)
53 PF04056 Ssl1: Ssl1-like; Int 67.4 62 0.0013 25.9 8.8 93 113-209 75-171 (193)
54 COG0616 SppA Periplasmic serin 66.4 38 0.00083 29.1 8.0 66 108-175 60-133 (317)
55 cd07021 Clp_protease_NfeD_like 66.4 15 0.00032 28.9 5.0 61 110-174 2-62 (178)
56 COG1030 NfeD Membrane-bound se 66.0 17 0.00036 32.8 5.7 69 106-178 25-93 (436)
57 COG1105 FruK Fructose-1-phosph 65.4 70 0.0015 27.6 9.2 86 118-210 111-196 (310)
58 COG1121 ZnuC ABC-type Mn/Zn tr 64.1 22 0.00049 29.6 5.9 50 138-190 158-207 (254)
59 COG4152 ABC-type uncharacteriz 63.3 73 0.0016 26.9 8.6 71 138-209 149-223 (300)
60 KOG2882|consensus 63.2 24 0.00051 30.2 5.9 73 138-210 22-102 (306)
61 cd02071 MM_CoA_mut_B12_BD meth 62.6 56 0.0012 23.6 8.8 79 123-209 39-122 (122)
62 PRK01973 septum formation inhi 62.4 60 0.0013 27.4 8.2 68 121-191 26-98 (271)
63 PRK04516 minC septum formation 62.1 50 0.0011 27.3 7.5 68 121-191 25-97 (235)
64 TIGR01662 HAD-SF-IIIA HAD-supe 62.0 45 0.00098 24.0 6.8 15 162-176 33-47 (132)
65 PF02579 Nitro_FeMo-Co: Dinitr 61.9 21 0.00045 24.1 4.7 46 163-208 46-93 (94)
66 PRK08699 DNA polymerase III su 60.9 40 0.00087 29.1 7.2 86 121-209 93-183 (325)
67 TIGR01684 viral_ppase viral ph 60.4 28 0.0006 29.8 5.9 56 138-193 126-187 (301)
68 COG4618 ArpD ABC-type protease 60.0 39 0.00086 31.3 7.1 70 138-208 491-563 (580)
69 cd00170 SEC14 Sec14p-like lipi 59.7 34 0.00075 24.7 5.9 71 139-209 64-147 (157)
70 PRK11475 DNA-binding transcrip 59.7 44 0.00095 26.7 6.8 86 119-209 22-111 (207)
71 PF00072 Response_reg: Respons 58.6 55 0.0012 22.2 8.8 82 119-208 28-112 (112)
72 PF07894 DUF1669: Protein of u 58.0 23 0.00049 30.1 5.0 66 121-191 130-198 (284)
73 TIGR01460 HAD-SF-IIA Haloacid 56.4 21 0.00045 29.1 4.4 69 141-209 1-77 (236)
74 PF05209 MinC_N: Septum format 56.0 25 0.00054 24.6 4.2 49 119-172 21-74 (99)
75 PRK11778 putative inner membra 56.0 73 0.0016 27.7 7.9 69 106-175 89-159 (330)
76 COG1137 YhbG ABC-type (unclass 54.5 71 0.0015 26.2 6.9 51 137-190 157-207 (243)
77 PF03641 Lysine_decarbox: Poss 54.2 38 0.00083 25.0 5.2 53 155-207 63-133 (133)
78 cd07018 S49_SppA_67K_type Sign 53.7 54 0.0012 26.4 6.5 50 122-172 30-80 (222)
79 PRK02261 methylaspartate mutas 53.5 92 0.002 23.2 8.9 67 137-210 54-133 (137)
80 PF06418 CTP_synth_N: CTP synt 53.4 73 0.0016 26.9 7.1 72 139-210 135-223 (276)
81 KOG0237|consensus 53.1 52 0.0011 31.0 6.7 38 143-181 42-79 (788)
82 PF00606 Glycoprotein_B: Herpe 52.4 5.1 0.00011 38.2 0.3 54 8-68 620-679 (713)
83 PF03572 Peptidase_S41: Peptid 52.1 47 0.001 24.8 5.6 52 109-161 2-55 (169)
84 cd07020 Clp_protease_NfeD_1 No 52.0 39 0.00084 26.5 5.2 60 110-173 2-61 (187)
85 PRK10949 protease 4; Provision 50.7 1.1E+02 0.0024 29.0 8.7 69 106-175 325-401 (618)
86 PLN03211 ABC transporter G-25; 50.7 1.3E+02 0.0029 28.6 9.4 71 138-209 225-300 (659)
87 PHA03398 viral phosphatase sup 48.3 53 0.0011 28.2 5.7 56 138-193 128-189 (303)
88 TIGR02717 AcCoA-syn-alpha acet 48.2 2.1E+02 0.0045 25.8 10.6 90 115-209 344-442 (447)
89 TIGR01501 MthylAspMutase methy 48.1 72 0.0016 23.9 5.8 57 153-211 63-132 (134)
90 TIGR00705 SppA_67K signal pept 47.8 79 0.0017 29.7 7.3 55 122-176 77-132 (584)
91 cd01948 EAL EAL domain. This d 47.6 1.3E+02 0.0027 23.7 7.8 83 110-192 118-225 (240)
92 COG0396 sufC Cysteine desulfur 47.6 1.6E+02 0.0036 24.4 9.0 82 124-209 149-237 (251)
93 TIGR01672 AphA HAD superfamily 46.1 74 0.0016 26.2 6.2 35 159-193 119-159 (237)
94 cd07015 Clp_protease_NfeD Nodu 45.6 53 0.0011 25.7 5.0 61 110-174 2-62 (172)
95 TIGR00955 3a01204 The Eye Pigm 45.3 1.7E+02 0.0038 27.5 9.3 71 138-209 185-260 (617)
96 cd00562 NifX_NifB This CD repr 45.3 69 0.0015 21.8 5.2 46 162-207 53-101 (102)
97 cd06207 CyPoR_like NADPH cytoc 45.2 76 0.0017 27.8 6.5 89 118-208 267-369 (382)
98 COG4555 NatA ABC-type Na+ tran 45.2 1.4E+02 0.0029 24.6 7.2 51 138-189 152-203 (245)
99 cd01465 vWA_subgroup VWA subgr 44.9 1.3E+02 0.0027 22.4 7.2 68 140-207 99-170 (170)
100 TIGR02461 osmo_MPG_phos mannos 43.8 76 0.0017 25.6 5.9 51 141-191 2-54 (225)
101 PTZ00445 p36-lilke protein; Pr 43.7 73 0.0016 26.0 5.6 61 122-182 26-103 (219)
102 COG2179 Predicted hydrolase of 43.7 1.5E+02 0.0032 23.3 7.0 56 138-193 28-87 (175)
103 TIGR01486 HAD-SF-IIB-MPGP mann 43.5 70 0.0015 26.1 5.7 33 159-191 21-55 (256)
104 TIGR02663 nifX nitrogen fixati 43.3 73 0.0016 22.9 5.2 43 169-211 62-107 (119)
105 PRK00030 minC septum formation 43.2 1.8E+02 0.0039 24.9 8.1 66 120-191 24-95 (292)
106 TIGR00705 SppA_67K signal pept 42.8 1.7E+02 0.0036 27.6 8.6 69 106-175 307-383 (584)
107 PF13716 CRAL_TRIO_2: Divergen 41.9 1.4E+02 0.003 21.9 6.8 70 139-208 50-132 (149)
108 PRK00696 sucC succinyl-CoA syn 41.1 2.5E+02 0.0054 24.6 9.5 86 121-209 293-383 (388)
109 smart00516 SEC14 Domain in hom 40.0 1.5E+02 0.0032 21.7 7.5 70 139-208 64-145 (158)
110 cd07014 S49_SppA Signal peptid 38.9 1.5E+02 0.0031 22.8 6.6 53 121-174 22-75 (177)
111 cd07561 Peptidase_S41_CPP_like 38.1 1.3E+02 0.0028 24.9 6.5 58 106-164 63-120 (256)
112 PF12340 DUF3638: Protein of u 37.7 1.6E+02 0.0034 24.2 6.8 80 106-190 69-148 (229)
113 cd00851 MTH1175 This uncharact 36.9 1E+02 0.0022 21.0 5.0 45 162-206 55-101 (103)
114 cd03238 ABC_UvrA The excision 36.8 2E+02 0.0043 22.3 7.0 45 138-183 108-152 (176)
115 PRK09580 sufC cysteine desulfu 36.6 2.1E+02 0.0045 23.0 7.5 52 132-184 158-209 (248)
116 PF04895 DUF651: Archaeal prot 36.4 1.2E+02 0.0025 22.0 5.2 35 173-211 50-84 (110)
117 PRK10949 protease 4; Provision 35.0 1.6E+02 0.0034 28.0 7.1 51 125-175 99-150 (618)
118 PLN02334 ribulose-phosphate 3- 34.9 1.1E+02 0.0024 24.7 5.6 34 118-151 14-47 (229)
119 cd00852 NifB NifB belongs to a 34.8 1.3E+02 0.0028 20.9 5.3 38 169-206 64-104 (106)
120 KOG0061|consensus 33.8 2.1E+02 0.0046 27.0 7.9 68 141-209 191-264 (613)
121 PF13905 Thioredoxin_8: Thiore 33.6 1.4E+02 0.0031 19.7 6.2 51 139-189 2-57 (95)
122 COG2248 Predicted hydrolase (m 33.5 2.5E+02 0.0055 23.7 7.3 76 111-188 204-291 (304)
123 PF00563 EAL: EAL domain; Int 33.5 1.7E+02 0.0037 22.9 6.4 54 138-191 170-225 (236)
124 TIGR00696 wecB_tagA_cpsF bacte 33.0 91 0.002 24.4 4.5 34 153-186 31-64 (177)
125 PRK10619 histidine/lysine/argi 32.7 2.7E+02 0.0058 22.6 7.6 47 137-184 170-216 (257)
126 COG0561 Cof Predicted hydrolas 32.7 1.5E+02 0.0032 24.1 6.1 55 139-193 4-61 (264)
127 PRK00192 mannosyl-3-phosphogly 32.3 1.4E+02 0.0031 24.5 5.9 33 159-191 26-60 (273)
128 PRK09653 eutD phosphotransacet 32.2 2.8E+02 0.0061 23.8 7.9 57 137-200 14-72 (324)
129 TIGR01664 DNA-3'-Pase DNA 3'-p 32.2 96 0.0021 23.8 4.5 55 139-193 14-95 (166)
130 TIGR01978 sufC FeS assembly AT 32.1 2.4E+02 0.0052 22.5 7.1 49 136-185 161-209 (243)
131 cd01828 sialate_O-acetylestera 32.0 2.1E+02 0.0046 21.2 7.3 24 155-178 70-95 (169)
132 PF03446 NAD_binding_2: NAD bi 31.9 2E+02 0.0043 21.7 6.3 41 162-205 16-56 (163)
133 TIGR03771 anch_rpt_ABC anchore 31.8 2.6E+02 0.0057 22.2 7.5 44 137-181 131-174 (223)
134 PF13401 AAA_22: AAA domain; P 31.8 48 0.001 23.5 2.7 54 121-179 70-125 (131)
135 PRK01158 phosphoglycolate phos 31.5 1.8E+02 0.0039 22.9 6.3 32 160-191 26-59 (230)
136 PRK13540 cytochrome c biogenes 31.3 2.5E+02 0.0054 21.8 7.3 45 137-182 145-189 (200)
137 TIGR00225 prc C-terminal pepti 31.2 1.8E+02 0.0039 25.0 6.5 54 107-161 151-204 (334)
138 cd07560 Peptidase_S41_CPP C-te 31.2 1.9E+02 0.0041 23.1 6.3 50 109-159 50-99 (211)
139 PRK12702 mannosyl-3-phosphogly 31.1 1.8E+02 0.0039 25.0 6.3 34 159-192 23-58 (302)
140 smart00245 TSPc tail specific 31.1 1.9E+02 0.0041 22.6 6.2 52 107-159 28-79 (192)
141 TIGR01189 ccmA heme ABC export 30.9 2.1E+02 0.0045 22.2 6.4 42 137-179 145-186 (198)
142 CHL00131 ycf16 sulfate ABC tra 30.8 2.8E+02 0.0061 22.3 7.4 48 137-185 169-216 (252)
143 PF08496 Peptidase_S49_N: Pept 30.5 1E+02 0.0022 23.7 4.4 43 105-147 96-140 (155)
144 cd03269 ABC_putative_ATPase Th 30.5 2.6E+02 0.0057 21.8 7.5 45 137-182 146-190 (210)
145 cd03262 ABC_HisP_GlnQ_permease 30.4 2.6E+02 0.0057 21.7 7.6 43 138-181 154-196 (213)
146 smart00052 EAL Putative diguan 30.4 2.7E+02 0.0058 21.8 8.0 55 138-192 169-226 (241)
147 TIGR01487 SPP-like sucrose-pho 30.1 2.2E+02 0.0047 22.3 6.5 11 110-120 4-14 (215)
148 TIGR01231 lacC tagatose-6-phos 30.0 3.2E+02 0.007 22.7 10.8 76 125-206 115-191 (309)
149 cd03292 ABC_FtsE_transporter F 29.8 2.7E+02 0.0059 21.7 7.6 45 138-183 155-199 (214)
150 COG1433 Uncharacterized conser 29.6 1.7E+02 0.0038 21.5 5.2 47 162-208 57-105 (121)
151 KOG2227|consensus 29.5 94 0.002 28.6 4.5 88 124-211 241-338 (529)
152 PF13788 DUF4180: Domain of un 29.4 2.3E+02 0.0049 20.6 10.1 99 107-207 6-113 (113)
153 COG2197 CitB Response regulato 29.4 2.9E+02 0.0063 21.9 7.2 68 137-209 46-116 (211)
154 PRK05331 putative phosphate ac 29.3 1.5E+02 0.0033 25.7 5.7 51 151-201 11-64 (334)
155 cd03217 ABC_FeS_Assembly ABC-t 29.3 2.7E+02 0.006 21.6 8.2 47 137-184 122-168 (200)
156 PF03808 Glyco_tran_WecB: Glyc 29.3 1.2E+02 0.0025 23.4 4.6 34 151-184 29-62 (172)
157 cd03240 ABC_Rad50 The catalyti 29.1 2.9E+02 0.0062 21.8 7.0 46 137-183 139-186 (204)
158 PRK09426 methylmalonyl-CoA mut 29.1 3.2E+02 0.0069 26.5 8.2 82 120-209 619-705 (714)
159 PRK10976 putative hydrolase; P 29.0 2E+02 0.0044 23.3 6.3 32 160-191 25-58 (266)
160 TIGR00960 3a0501s02 Type II (G 29.0 2.8E+02 0.0061 21.7 7.6 44 138-182 157-200 (216)
161 PF05152 DUF705: Protein of un 28.6 1.7E+02 0.0038 24.9 5.7 56 138-193 122-183 (297)
162 cd03213 ABCG_EPDR ABCG transpo 28.5 2.8E+02 0.0061 21.5 6.9 43 137-180 129-171 (194)
163 cd03226 ABC_cobalt_CbiO_domain 28.3 2.8E+02 0.0062 21.5 7.8 45 137-182 144-188 (205)
164 PRK03669 mannosyl-3-phosphogly 28.2 2E+02 0.0042 23.7 6.1 54 138-191 7-63 (271)
165 TIGR02463 MPGP_rel mannosyl-3- 28.0 2.1E+02 0.0046 22.4 6.1 31 160-190 22-54 (221)
166 TIGR00423 radical SAM domain p 27.9 3.7E+02 0.0081 22.7 8.3 54 120-176 35-88 (309)
167 COG1131 CcmA ABC-type multidru 27.7 3.7E+02 0.0081 22.6 8.0 68 138-206 155-227 (293)
168 PRK15126 thiamin pyrimidine py 27.5 2.1E+02 0.0046 23.3 6.2 32 160-191 25-58 (272)
169 cd03268 ABC_BcrA_bacitracin_re 27.5 3E+02 0.0064 21.4 7.2 44 138-182 145-188 (208)
170 PF12261 T_hemolysin: Thermost 27.5 2.2E+02 0.0047 22.5 5.8 58 139-196 84-142 (179)
171 cd06533 Glyco_transf_WecG_TagA 27.4 1.2E+02 0.0025 23.4 4.3 35 152-186 28-62 (171)
172 PLN00124 succinyl-CoA ligase [ 27.3 3.7E+02 0.0081 24.2 7.9 84 121-207 328-416 (422)
173 PF00448 SRP54: SRP54-type pro 27.2 3.1E+02 0.0068 21.6 7.1 45 125-169 71-115 (196)
174 TIGR01016 sucCoAbeta succinyl- 27.1 4.3E+02 0.0093 23.1 10.8 88 115-207 284-381 (386)
175 cd03235 ABC_Metallic_Cations A 27.1 3.1E+02 0.0066 21.4 7.6 44 138-182 151-194 (213)
176 TIGR01482 SPP-subfamily Sucros 27.0 2.1E+02 0.0045 22.4 5.9 32 160-191 21-54 (225)
177 cd03234 ABCG_White The White s 27.0 3.1E+02 0.0067 21.7 6.9 53 136-189 160-214 (226)
178 PF13911 AhpC-TSA_2: AhpC/TSA 26.8 1.5E+02 0.0033 20.7 4.6 22 159-180 2-23 (115)
179 COG0151 PurD Phosphoribosylami 26.8 2E+02 0.0043 26.0 6.0 50 159-210 76-137 (428)
180 cd03216 ABC_Carb_Monos_I This 26.7 2.8E+02 0.006 20.8 7.7 51 130-181 93-143 (163)
181 cd03215 ABC_Carb_Monos_II This 26.6 2.9E+02 0.0063 21.0 7.3 43 137-180 122-164 (182)
182 cd03230 ABC_DR_subfamily_A Thi 26.5 2.9E+02 0.0062 20.9 7.5 48 133-181 109-156 (173)
183 TIGR02673 FtsE cell division A 25.9 3.2E+02 0.0069 21.3 7.5 43 138-181 156-198 (214)
184 cd01427 HAD_like Haloacid deha 25.9 1.5E+02 0.0032 20.3 4.4 36 156-191 26-63 (139)
185 TIGR01656 Histidinol-ppas hist 25.8 1.9E+02 0.0041 21.3 5.1 35 158-192 31-82 (147)
186 PRK10726 hypothetical protein; 25.7 78 0.0017 22.6 2.7 13 56-68 63-75 (105)
187 TIGR00956 3a01205 Pleiotropic 25.6 5.1E+02 0.011 27.3 9.5 71 138-209 228-304 (1394)
188 PF00466 Ribosomal_L10: Riboso 25.5 2E+02 0.0043 19.7 4.9 59 125-190 8-66 (100)
189 PRK13539 cytochrome c biogenes 25.4 3.2E+02 0.007 21.3 6.7 45 137-182 145-189 (207)
190 cd01125 repA Hexameric Replica 25.1 2.6E+02 0.0057 22.4 6.2 54 124-178 98-157 (239)
191 cd03246 ABCC_Protease_Secretio 24.7 3.1E+02 0.0067 20.7 7.8 48 134-182 111-158 (173)
192 PRK13546 teichoic acids export 24.6 4E+02 0.0087 21.9 7.7 45 137-182 161-205 (264)
193 TIGR01897 cas_MJ1666 CRISPR-as 24.5 1.8E+02 0.0039 26.1 5.4 72 113-184 100-173 (410)
194 COG1602 Uncharacterized conser 24.4 1.8E+02 0.004 25.9 5.3 68 140-211 288-377 (402)
195 PRK10558 alpha-dehydro-beta-de 24.3 2.8E+02 0.0061 23.0 6.3 65 138-208 41-111 (256)
196 cd01836 FeeA_FeeB_like SGNH_hy 24.3 2.8E+02 0.006 21.0 6.0 57 122-179 52-115 (191)
197 PRK11124 artP arginine transpo 24.3 3.7E+02 0.008 21.4 7.5 45 138-183 160-204 (242)
198 TIGR03740 galliderm_ABC gallid 24.2 3.6E+02 0.0077 21.2 7.3 51 138-189 143-194 (223)
199 PRK04804 minC septum formation 24.2 3.9E+02 0.0084 21.6 8.5 65 122-190 24-94 (221)
200 COG2401 ABC-type ATPase fused 24.2 1.9E+02 0.0042 26.5 5.4 58 129-187 517-575 (593)
201 PRK13538 cytochrome c biogenes 24.2 3.4E+02 0.0075 21.0 7.3 46 137-183 147-192 (204)
202 PRK00339 minC septum formation 24.1 4.2E+02 0.009 22.0 8.4 69 121-191 30-104 (249)
203 TIGR00288 conserved hypothetic 24.1 1E+02 0.0022 23.9 3.3 40 159-198 118-157 (160)
204 TIGR01166 cbiO cobalt transpor 24.0 3.3E+02 0.0072 20.8 7.1 40 138-178 146-185 (190)
205 PRK13537 nodulation ABC transp 24.0 4.1E+02 0.0089 22.4 7.4 51 138-189 157-208 (306)
206 TIGR01187 potA spermidine/putr 23.7 4.5E+02 0.0097 22.4 7.6 42 138-180 119-161 (325)
207 PRK03692 putative UDP-N-acetyl 23.6 1.6E+02 0.0034 24.4 4.5 35 152-186 87-121 (243)
208 TIGR03608 L_ocin_972_ABC putat 23.4 3.5E+02 0.0076 20.9 7.9 45 137-182 152-196 (206)
209 PRK11264 putative amino-acid A 23.3 3.9E+02 0.0085 21.4 7.6 44 138-182 163-206 (250)
210 PF09895 DUF2122: RecB-family 23.2 1.2E+02 0.0025 21.9 3.2 14 194-207 22-35 (106)
211 PF11977 RNase_Zc3h12a: Zc3h12 23.2 62 0.0014 24.5 2.0 35 139-173 3-41 (155)
212 cd03266 ABC_NatA_sodium_export 23.2 3.7E+02 0.008 21.0 7.4 43 138-181 155-197 (218)
213 PLN02327 CTP synthase 23.1 2E+02 0.0043 27.0 5.5 50 106-155 139-190 (557)
214 TIGR00730 conserved hypothetic 22.8 2.2E+02 0.0049 22.2 5.1 55 155-209 106-177 (178)
215 TIGR02324 CP_lyasePhnL phospho 22.8 3.8E+02 0.0083 21.0 8.3 46 137-183 167-212 (224)
216 TIGR01188 drrA daunorubicin re 22.8 4.6E+02 0.0099 22.0 7.5 42 138-180 143-184 (302)
217 cd03279 ABC_sbcCD SbcCD and ot 22.7 3.2E+02 0.007 21.5 6.2 48 138-186 152-199 (213)
218 TIGR01686 FkbH FkbH-like domai 22.6 2.8E+02 0.006 23.6 6.1 33 156-188 33-67 (320)
219 TIGR01990 bPGM beta-phosphoglu 22.3 1.3E+02 0.0029 22.6 3.8 36 157-192 90-125 (185)
220 cd03225 ABC_cobalt_CbiO_domain 22.3 3.8E+02 0.0082 20.8 7.5 43 138-181 153-195 (211)
221 PRK13643 cbiO cobalt transport 22.3 4.6E+02 0.01 21.8 7.7 44 137-181 162-205 (288)
222 KOG1292|consensus 22.2 1.2E+02 0.0025 28.0 3.7 64 5-68 305-387 (510)
223 cd03412 CbiK_N Anaerobic cobal 22.2 3.2E+02 0.0068 19.9 6.0 51 154-208 14-66 (127)
224 PRK15056 manganese/iron transp 22.2 4.4E+02 0.0096 21.6 7.6 43 138-181 161-203 (272)
225 PF04120 Iron_permease: Low af 22.1 87 0.0019 23.4 2.5 17 56-72 15-31 (132)
226 PRK07471 DNA polymerase III su 22.1 2.4E+02 0.0052 24.7 5.7 68 139-209 143-211 (365)
227 TIGR00182 plsX fatty acid/phos 21.9 2.8E+02 0.006 24.0 5.9 48 152-200 3-51 (322)
228 KOG4132|consensus 21.9 3.4E+02 0.0075 22.5 6.0 61 148-208 190-252 (260)
229 cd03232 ABC_PDR_domain2 The pl 21.9 3.8E+02 0.0082 20.6 7.1 44 137-181 126-169 (192)
230 PRK00293 dipZ thiol:disulfide 21.7 6.7E+02 0.014 23.5 10.0 76 120-198 457-542 (571)
231 PRK10530 pyridoxal phosphate ( 21.7 3E+02 0.0065 22.2 6.0 31 160-190 26-58 (272)
232 TIGR01456 CECR5 HAD-superfamil 21.7 2E+02 0.0043 24.6 5.0 51 141-191 3-63 (321)
233 COG2200 Rtn c-di-GMP phosphodi 21.7 2.3E+02 0.005 23.3 5.2 84 109-192 121-229 (256)
234 TIGR00642 mmCoA_mut_beta methy 21.6 6.4E+02 0.014 24.0 8.6 82 119-209 531-614 (619)
235 PRK03511 minC septum formation 21.6 2.7E+02 0.0058 22.8 5.5 73 109-190 15-94 (228)
236 cd06202 Nitric_oxide_synthase 21.4 3.3E+02 0.0072 24.1 6.5 89 118-208 287-389 (406)
237 PF02681 DUF212: Divergent PAP 21.2 30 0.00064 26.2 -0.2 18 25-42 41-58 (141)
238 PRK00411 cdc6 cell division co 21.2 3.9E+02 0.0084 23.1 6.9 64 123-186 122-189 (394)
239 cd06522 GH25_AtlA-like AtlA is 21.1 3.2E+02 0.0069 21.3 5.8 32 139-171 92-123 (192)
240 TIGR02009 PGMB-YQAB-SF beta-ph 21.1 1.4E+02 0.0029 22.6 3.6 35 158-192 92-126 (185)
241 cd03219 ABC_Mj1267_LivG_branch 20.9 4.3E+02 0.0093 20.9 7.5 44 138-182 162-205 (236)
242 PF00308 Bac_DnaA: Bacterial d 20.9 4.4E+02 0.0095 21.0 7.6 59 117-177 66-137 (219)
243 cd00853 NifX NifX belongs to a 20.8 1.7E+02 0.0036 20.2 3.7 39 169-207 60-101 (102)
244 COG3887 Predicted signaling pr 20.7 4.8E+02 0.01 24.8 7.4 101 106-209 293-412 (655)
245 PRK10908 cell division protein 20.7 4.2E+02 0.0092 20.8 7.6 45 138-183 156-200 (222)
246 TIGR03873 F420-0_ABC_ATP propo 20.7 4.6E+02 0.0099 21.2 7.4 51 138-189 156-207 (256)
247 cd03224 ABC_TM1139_LivF_branch 20.7 4.2E+02 0.009 20.7 7.3 43 138-181 151-193 (222)
248 TIGR01288 nodI ATP-binding ABC 20.6 5.1E+02 0.011 21.7 7.5 43 138-181 154-196 (303)
249 PRK10953 cysJ sulfite reductas 20.6 3.2E+02 0.007 25.8 6.5 88 118-208 486-587 (600)
250 cd03255 ABC_MJ0796_Lo1CDE_FtsE 20.6 4.2E+02 0.0091 20.7 7.0 45 138-183 159-204 (218)
251 PRK13644 cbiO cobalt transport 20.4 4.7E+02 0.01 21.5 6.9 46 137-183 154-199 (274)
252 PF13607 Succ_CoA_lig: Succiny 20.3 3.7E+02 0.0081 20.0 8.8 26 179-207 110-135 (138)
253 TIGR00678 holB DNA polymerase 20.3 2.5E+02 0.0054 21.5 5.0 96 108-209 65-166 (188)
254 PF07541 EIF_2_alpha: Eukaryot 20.2 3.3E+02 0.0071 19.6 5.2 55 124-179 44-103 (114)
255 PF05552 TM_helix: Conserved T 20.2 98 0.0021 18.8 2.1 21 52-72 12-32 (53)
256 cd03297 ABC_ModC_molybdenum_tr 20.2 4.3E+02 0.0093 20.6 7.3 44 138-182 150-194 (214)
257 PF12911 OppC_N: N-terminal TM 20.1 1.7E+02 0.0037 17.6 3.3 25 56-80 16-40 (56)
No 1
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=3.6e-42 Score=314.46 Aligned_cols=203 Identities=24% Similarity=0.319 Sum_probs=181.7
Q ss_pred CCCcCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc----------------ccchhHHHH
Q psy2736 1 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH----------------GKSVDATQE 64 (211)
Q Consensus 1 ~~~~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~----------------P~~~La~il 64 (211)
|||++|+||||+++|++|+++|||||+|++++++||++|.++|+|||++++++++ |+++||+++
T Consensus 287 ~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~il 366 (563)
T TIGR00815 287 TGYKIDANQELVAQGIANIVGSFFSCYPATGSLSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAII 366 (563)
T ss_pred hCCCCCCcHHHHHhhHHHHHHHHhCccCCCCcchHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999997 999999999
Q ss_pred HHHH----------------------HHHHHHHHHhcccccc---c-ee------eeecccceeecccCcc---------
Q psy2736 65 ILAV----------------------GVCNLASCFFQAYPVS---G-SI------SRSAVQSVSGVRTPMS--------- 103 (211)
Q Consensus 65 i~~~----------------------~~~t~~~~~~~~~~~g---g-~~------~~~~~p~~~~~~~~~~--------- 103 (211)
++++ |++|+++|+++|++.| | ++ ||.+||+...+++.++
T Consensus 367 i~~~~~l~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~Gi~vGv~~s~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~ 446 (563)
T TIGR00815 367 ISAVRGLIDYKELYKLWKADKMDFVVWLVTFFGVVFTSIEIGLLVGVALSAAFLLLRIARPRGAVLGRVPGTEVYRSIKQ 446 (563)
T ss_pred HHHHhcccCHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeeecCCCCcccchhh
Confidence 9998 8899999999999999 4 22 9999999866654321
Q ss_pred ----ccCceEEEEccCcceecccHHHHHHHHHHHhh------hcC---CcEEEecCCCcccchHHHHHHHHHHHHHHhcC
Q psy2736 104 ----RVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSI------KQG---IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRG 170 (211)
Q Consensus 104 ----~~~~~i~v~~~~g~L~F~n~~~~~~~l~~~~~------~~~---~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g 170 (211)
.+.+++.++|++|+|+|+|+++|++++.+..+ +++ +.+|+|+++++++|+||++.|.++.++++++|
T Consensus 447 ~~~~~~~~~i~I~r~~g~L~F~na~~~~~~l~~~~~~~~~~~~~~~~~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g 526 (563)
T TIGR00815 447 YPNARPPPGILVYRVDGPLYFANAEDLKDRLLKRIEDETRRELERPPLQVVILDMSAVPHLDTSGIHALEELRKELKARG 526 (563)
T ss_pred CcccCCCCCEEEEEcCCceEeCcHHHHHHHHHHHHhhhccccccCCCceEEEEECCCCCcchHHHHHHHHHHHHHHHHcC
Confidence 12346899999999999999999999988776 222 78999999999999999999999999999999
Q ss_pred CcEEEEecChhHHHHHhhcCCCC----eEEecChHHH
Q psy2736 171 QPLFFFNLKPSVVAVFEGVQPKD----FVVYYDSREL 203 (211)
Q Consensus 171 ~~l~l~~~~~~v~~~l~~~g~~~----~~i~~~~~ea 203 (211)
++++++++++++++.|++.|..+ .++|+|.+||
T Consensus 527 ~~l~l~~~~~~v~~~l~~~gl~~~~~~~~~f~s~~~A 563 (563)
T TIGR00815 527 IQLLLANPNKAVRSTLKRGGLVELIGEEHFFPSVSDA 563 (563)
T ss_pred CEEEEecCChHHHHHHHHCCchhhcCCcceeCChhhC
Confidence 99999999999999999999533 3799998885
No 2
>PRK11660 putative transporter; Provisional
Probab=100.00 E-value=1.1e-41 Score=311.56 Aligned_cols=205 Identities=17% Similarity=0.189 Sum_probs=181.1
Q ss_pred CCCcCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc----------------ccchhHHHH
Q psy2736 1 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH----------------GKSVDATQE 64 (211)
Q Consensus 1 ~~~~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~----------------P~~~La~il 64 (211)
+++++|+||||+++|++|+++|||||+|++++++||++|.++|||||++++++++ |+++||+++
T Consensus 307 ~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~il 386 (568)
T PRK11660 307 TGTKHSANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALL 386 (568)
T ss_pred cCCCCCCcHHHHHHhHHHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999997 999999999
Q ss_pred HHHH-----------------------HHHHHHHHHhcccccc---c-e--e----eeecccceeecccCc-cccCceEE
Q psy2736 65 ILAV-----------------------GVCNLASCFFQAYPVS---G-S--I----SRSAVQSVSGVRTPM-SRVGIEYL 110 (211)
Q Consensus 65 i~~~-----------------------~~~t~~~~~~~~~~~g---g-~--~----~~~~~p~~~~~~~~~-~~~~~~i~ 110 (211)
++++ |++|++.++++|+..| | . + +|.+++.. ....+ .++.+++.
T Consensus 387 i~~~~~m~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~~--~~~~~~~~~~~~i~ 464 (568)
T PRK11660 387 LMVAWNMSEAHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIAEMTR--LAPISVQDVPDDVL 464 (568)
T ss_pred HHHHHHhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccc--ccccccccCCCcEE
Confidence 9998 7788888999999999 4 2 2 66666543 11111 23345789
Q ss_pred EEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhhcC
Q psy2736 111 LLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQ 190 (211)
Q Consensus 111 v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g 190 (211)
++|++|+|||+|++++++++.+.. ++.+++|+|+++++++|+||+++|.++.+++++ |++++++++++++++.|+++|
T Consensus 465 iv~~~g~L~F~n~~~l~~~l~~~~-~~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l~~l~~~v~~~l~~~g 542 (568)
T PRK11660 465 VLRINGPLFFAAAERLFTELESRT-EGKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRICNLQFQPLRTLARAG 542 (568)
T ss_pred EEEeCCeeeeeeHHHHHHHHHhhC-CCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEEecCChHHHHHHHHCC
Confidence 999999999999999999998865 335899999999999999999999999999999 999999999999999999999
Q ss_pred CCC----eEEecChHHHHHHHhh
Q psy2736 191 PKD----FVVYYDSRELDHLLRS 209 (211)
Q Consensus 191 ~~~----~~i~~~~~ea~~~l~~ 209 (211)
..+ +++|+|.+||.+..++
T Consensus 543 l~~~~~~~~if~~~~~Al~~~~~ 565 (568)
T PRK11660 543 IQPIPGRLAFYPTLREALADLLR 565 (568)
T ss_pred ChhhcCcccccCCHHHHHHHHHh
Confidence 543 6899999999998765
No 3
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=302.08 Aligned_cols=208 Identities=24% Similarity=0.283 Sum_probs=184.7
Q ss_pred CCCcCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc----------------ccchhHHHH
Q psy2736 1 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH----------------GKSVDATQE 64 (211)
Q Consensus 1 ~~~~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~----------------P~~~La~il 64 (211)
||+++|+||||+|||++|+++|||||+|++|+++||++|.++|||||+|++++++ |+|+||+++
T Consensus 276 ~~~~~d~nrELiaqGiaNi~sglfgg~p~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavl 355 (554)
T COG0659 276 TGTKHDSNRELIAQGIANIASGLFGGIPATGSISRSAINIKSGARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVL 355 (554)
T ss_pred cCCCCCCCHHHHHhhHHHHHHHHhCCccccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999997 999999999
Q ss_pred HHHH-----------------------HHHHHHHHHhcccccc---c---ee----eeecccceeecccCcc--------
Q psy2736 65 ILAV-----------------------GVCNLASCFFQAYPVS---G---SI----SRSAVQSVSGVRTPMS-------- 103 (211)
Q Consensus 65 i~~~-----------------------~~~t~~~~~~~~~~~g---g---~~----~~~~~p~~~~~~~~~~-------- 103 (211)
++++ +++|++++++.|+..| | +. +|.++|.....++.++
T Consensus 356 i~v~~~l~~~~~~~~~~~~~~~~e~~v~~~t~~~tv~~~l~~GV~vGi~ls~~~~i~r~s~~~~~~~~~~~~~~~~~~~~ 435 (554)
T COG0659 356 ILVGWGLLDWSLLKPLLRKLPRGELLVLLTTALLTVFFDLVIGVVVGILLACLLFIRRISRPSIVVLGRVPGPAGSDNAL 435 (554)
T ss_pred HHHHHHhccHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhhccCCCcccccccc
Confidence 9998 7788889999999999 4 21 7888887644433221
Q ss_pred ----ccCceEEEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecC
Q psy2736 104 ----RVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLK 179 (211)
Q Consensus 104 ----~~~~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~ 179 (211)
++.+++.+||++|++||+|++++++++.+..+++++.+++|+++++++|.|+.++|+++.++++++|+++.+++++
T Consensus 436 ~~~~~~~~~~~v~ri~gplfF~~~~~~~~~i~~~~~~~~~~~il~~~~v~~iD~ta~~al~~~~~~~~~~g~~~~i~~~~ 515 (554)
T COG0659 436 KPLDEIGPGVLVYRLSGPLFFGNADRLERALLGLIEERPERVILDLKSVPYIDASAAEALEDLIKELERRGIQLLIVGLS 515 (554)
T ss_pred cccccCCCCeEEEEecCceEEeeHHHHHHHHHHHHhccCCEEEEEcccCCcCChhHHHHHHHHHHHHHHcCCEEEEeccc
Confidence 2345799999999999999999999999998765689999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcCCC----CeEEecChHHHHHHHh
Q psy2736 180 PSVVAVFEGVQPK----DFVVYYDSRELDHLLR 208 (211)
Q Consensus 180 ~~v~~~l~~~g~~----~~~i~~~~~ea~~~l~ 208 (211)
.+.++.+++.+.. ..++|++.+++.+..+
T Consensus 516 ~~~~~~l~~~~~~~~i~~~~~f~~~~~a~~~~~ 548 (554)
T COG0659 516 AQVLRLLRRAGLLYLVGAEHIFDSVDSALEKAR 548 (554)
T ss_pred hhhHHHHHHhccccccccccccchhHHHHHHHH
Confidence 9999999999943 2368898888887644
No 4
>KOG0236|consensus
Probab=100.00 E-value=5.5e-38 Score=289.90 Aligned_cols=209 Identities=27% Similarity=0.310 Sum_probs=182.6
Q ss_pred CCCcCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc----------------ccchhHHHH
Q psy2736 1 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH----------------GKSVDATQE 64 (211)
Q Consensus 1 ~~~~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~----------------P~~~La~il 64 (211)
|+|++|+||||+|+|++|++||||+|+|.+|++|||++|.++|+|||++|+++++ |+|+||+|+
T Consensus 355 ~~y~vd~nqELiAlG~~Ni~sSff~~~p~tgs~sRSav~~~sG~~T~~s~i~~~~~vl~~l~~l~p~f~~iP~~vLaaII 434 (665)
T KOG0236|consen 355 HGYKVDSNQELIALGISNILSSFFGCYPTTGSFSRSAVNIKSGGRTQVAGIVSAALVLLALLFLGPLFYYIPKCVLAAII 434 (665)
T ss_pred hCCeeCCChHHHHHHHHHHhhhhhceEcccchhhHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999997 999999999
Q ss_pred HHHH-----------------------HHHHHHHHHhcccccc---c-ee------eeecccceeecccCccc-------
Q psy2736 65 ILAV-----------------------GVCNLASCFFQAYPVS---G-SI------SRSAVQSVSGVRTPMSR------- 104 (211)
Q Consensus 65 i~~~-----------------------~~~t~~~~~~~~~~~g---g-~~------~~~~~p~~~~~~~~~~~------- 104 (211)
+.++ |++||+++++++++.| | ++ +|.+||+...+++++++
T Consensus 435 i~a~~~~l~~~~~~~~lwr~~k~D~~~~~~t~~~~i~~~ve~Glligv~~s~~~ii~~~~~p~~~~l~~~~~t~~~~~~~ 514 (665)
T KOG0236|consen 435 ISALIGMLIQLEDLKPLWRLSKIDLLIWVVTFFTTIFLSLEIGLLIGVAFSLFFIILRSQRPRISLLGRIPRTNIYRDIN 514 (665)
T ss_pred HHHhhHHHhhhhhhhhheeCCHHHHHHHHHHhheeeEehhhhhHHHHHHHHHHHHHHHhcCcchhhhcccCCCccccchh
Confidence 9998 9999999999999999 4 32 89999999777654321
Q ss_pred ------cCceEEEEccCcceecccHHHHHHHHH--HHhhhc--------------CCcEEEecCCCcccchHHHHHHHHH
Q psy2736 105 ------VGIEYLLLTPDRCLIFPSVDYVSNLVT--KHSIKQ--------------GIPVVVDCSHIYGADFTAAKVIEVL 162 (211)
Q Consensus 105 ------~~~~i~v~~~~g~L~F~n~~~~~~~l~--~~~~~~--------------~~~vIlD~s~v~~iD~t~l~~L~~~ 162 (211)
+-+++.|+|++++++|.|.+.+++.+. +...+. .+.+|+||+.++++|++|+.+|+++
T Consensus 515 ~y~~~~~~~gi~i~r~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vild~s~v~~iD~~g~~~L~~l 594 (665)
T KOG0236|consen 515 QYRELKEIPGIKIFRISSPLLFGNVESFEKKLERLKYLRKEEVLENSARELHENSIHSVILDCSGVSFIDTSGASALKSL 594 (665)
T ss_pred hcchhhccCceEEEEeccceeeccHHHHHHHHHHHHhhhhcccccCcccccccCcceEEEEECCccchhhHHHHHHHHHH
Confidence 123588999999999999999998772 333221 2579999999999999999999999
Q ss_pred HHHHHhcCCcEEEEecChhHHHHHhhcCCC-C---eEEecChHHHHHHHhh
Q psy2736 163 CQNFSRRGQPLFFFNLKPSVVAVFEGVQPK-D---FVVYYDSRELDHLLRS 209 (211)
Q Consensus 163 ~~~~~~~g~~l~l~~~~~~v~~~l~~~g~~-~---~~i~~~~~ea~~~l~~ 209 (211)
.+++++++++++++|+++++++.|.+.+.- . ..+|.+..|++...+.
T Consensus 595 ~~~~~~~~i~~~~~n~~~~v~~~l~~~~~~~~~~~~~~f~tv~~av~~~~~ 645 (665)
T KOG0236|consen 595 FKDLKTRGVQVLLANCPSSVREKLSKAGFFDFIGKDNLFLSVHDAVLDAVS 645 (665)
T ss_pred HHHHHhcCcEEEEeCCCHHHHHHHHhhccccccchhhhhccHHHHHHHHHH
Confidence 999999999999999999999999999742 2 3588888888876543
No 5
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.82 E-value=3.3e-21 Score=162.07 Aligned_cols=68 Identities=40% Similarity=0.542 Sum_probs=66.4
Q ss_pred CCCcCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc----------------ccchhHHHH
Q psy2736 1 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH----------------GKSVDATQE 64 (211)
Q Consensus 1 ~~~~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~----------------P~~~La~il 64 (211)
++|++|+||||+++|++|+++|||||+|++++++||++|+++|||||+|++++++ |+|+|||++
T Consensus 175 ~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~~~l~~iP~~~La~il 254 (280)
T PF00916_consen 175 TGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLAPLLAYIPKAVLAAIL 254 (280)
T ss_pred ccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999997 999999999
Q ss_pred HHHH
Q psy2736 65 ILAV 68 (211)
Q Consensus 65 i~~~ 68 (211)
++++
T Consensus 255 i~~~ 258 (280)
T PF00916_consen 255 IVVG 258 (280)
T ss_pred HHHH
Confidence 9998
No 6
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=99.78 E-value=2.2e-18 Score=124.67 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=89.6
Q ss_pred ceEEEEccCcceecccHHHHHHHHHHHhhh-cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHH
Q psy2736 107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSIK-QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAV 185 (211)
Q Consensus 107 ~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~-~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~ 185 (211)
+++.+++++|+|+|.|++.|++.+.+.+.+ +++.+++||+++++||+||+.+|..+.++++++|++++++++++++++.
T Consensus 7 ~~~~vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~~~~v~~~ 86 (106)
T TIGR02886 7 GDVLIVRLSGELDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNVSPAVKRL 86 (106)
T ss_pred CCEEEEEEecccchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 357899999999999999999999988753 3589999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCC-eEEecChHHH
Q psy2736 186 FEGVQPKD-FVVYYDSREL 203 (211)
Q Consensus 186 l~~~g~~~-~~i~~~~~ea 203 (211)
|+++|..+ +.+|++.+|+
T Consensus 87 l~~~gl~~~~~i~~~~~~a 105 (106)
T TIGR02886 87 FELSGLFKIIRIYESEEEA 105 (106)
T ss_pred HHHhCCceEEEEcCChHHh
Confidence 99999655 5899999886
No 7
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=99.77 E-value=2.9e-18 Score=124.65 Aligned_cols=97 Identities=11% Similarity=0.067 Sum_probs=88.7
Q ss_pred eEEEEccCcceecccHHHHHHHHHHHhh-hcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHH
Q psy2736 108 EYLLLTPDRCLIFPSVDYVSNLVTKHSI-KQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVF 186 (211)
Q Consensus 108 ~i~v~~~~g~L~F~n~~~~~~~l~~~~~-~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l 186 (211)
++.+++++|+|+|.++++|++++.+... +.++.+|+|+++|+++|+||+++|.+++++++.+|++++++++++++.+.|
T Consensus 10 ~~~v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v~~~l 89 (109)
T cd07041 10 GVLVLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEVAQTL 89 (109)
T ss_pred CEEEEeeeeeECHHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 4789999999999999999999877665 335799999999999999999999999999999999999999999999999
Q ss_pred hhcCCC--CeEEecChHHHH
Q psy2736 187 EGVQPK--DFVVYYDSRELD 204 (211)
Q Consensus 187 ~~~g~~--~~~i~~~~~ea~ 204 (211)
+++|.. .+++|+|.+||.
T Consensus 90 ~~~gl~~~~~~~~~t~~~Al 109 (109)
T cd07041 90 VELGIDLSGIRTAATLQQAL 109 (109)
T ss_pred HHhCCChhhceeeccHHHhC
Confidence 999963 579999999873
No 8
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=99.76 E-value=1.7e-18 Score=127.37 Aligned_cols=96 Identities=18% Similarity=0.249 Sum_probs=90.2
Q ss_pred eEEEEccCcceecccHHHHHHHHHHHhhhcC---------CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEec
Q psy2736 108 EYLLLTPDRCLIFPSVDYVSNLVTKHSIKQG---------IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNL 178 (211)
Q Consensus 108 ~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~---------~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~ 178 (211)
++.+++++|+|+|+|+++|++.+.+...+.+ +.+||||++|+++|++|+++|.++.++++++|++++|+++
T Consensus 9 ~v~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~ 88 (117)
T PF01740_consen 9 GVLIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGL 88 (117)
T ss_dssp TEEEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESH
T ss_pred CEEEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 5799999999999999999999999987764 7999999999999999999999999999999999999999
Q ss_pred ChhHHHHHhhcCC-CCe---EEecChHHH
Q psy2736 179 KPSVVAVFEGVQP-KDF---VVYYDSREL 203 (211)
Q Consensus 179 ~~~v~~~l~~~g~-~~~---~i~~~~~ea 203 (211)
++.+++.|+++|. ..+ .+|+|.+||
T Consensus 89 ~~~v~~~l~~~~~~~~~~~~~~~~s~~~A 117 (117)
T PF01740_consen 89 NPDVRRILERSGLIDFIPEDQIFPSVDDA 117 (117)
T ss_dssp HHHHHHHHHHTTGHHHSCGGEEESSHHHH
T ss_pred CHHHHHHHHHcCCChhcCCCCccCCHHHC
Confidence 9999999999995 346 899999987
No 9
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=99.71 E-value=5e-17 Score=116.54 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=80.4
Q ss_pred ceEEEEccCcceecccHHHHHHHHHHHhhhc-CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHH
Q psy2736 107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQ-GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAV 185 (211)
Q Consensus 107 ~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~-~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~ 185 (211)
+++.+++++|+|+|+|+++|++.+.+...++ ++.+|+||+++++||+||+++|.+++++++++|++++++++++++++.
T Consensus 7 ~~v~ii~~~G~l~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~~v~~~ 86 (100)
T cd06844 7 DDYWVVRLEGELDHHSVEQFKEELLHNITNVAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLTGISPAVRIT 86 (100)
T ss_pred CCEEEEEEEEEecHhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHH
Confidence 4588999999999999999999998776543 589999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCC
Q psy2736 186 FEGVQPKD 193 (211)
Q Consensus 186 l~~~g~~~ 193 (211)
|+++|+.+
T Consensus 87 l~~~gl~~ 94 (100)
T cd06844 87 LTESGLDK 94 (100)
T ss_pred HHHhCchh
Confidence 99999644
No 10
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=99.63 E-value=1.5e-15 Score=109.94 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=88.0
Q ss_pred ceEEEEccCcceecccHHHHHHHHHHHhhh-cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHH
Q psy2736 107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSIK-QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAV 185 (211)
Q Consensus 107 ~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~-~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~ 185 (211)
+++.+++++|+++|.|++.|++.+.+...+ +++.+++||+++.++|++|+..|.++.++++++|+++.++++++++.++
T Consensus 11 ~~~~vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~~l~~~~~~~~~~ 90 (108)
T TIGR00377 11 EGVVIVRLSGELDAHTAPLLREKVTPAAERTGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLVLVSVSPRVARL 90 (108)
T ss_pred CCEEEEEEecccccccHHHHHHHHHHHHHhcCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 357899999999999999999999988764 4588999999999999999999999999999999999999999999999
Q ss_pred HhhcCCC-CeEEecChHH
Q psy2736 186 FEGVQPK-DFVVYYDSRE 202 (211)
Q Consensus 186 l~~~g~~-~~~i~~~~~e 202 (211)
|+.+|.. .++++++.+|
T Consensus 91 l~~~~l~~~~~i~~~~~~ 108 (108)
T TIGR00377 91 LDITGLLRIIPIYPTVEE 108 (108)
T ss_pred HHHhChhheeccCCCCCC
Confidence 9999965 4689988764
No 11
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=99.54 E-value=5.2e-14 Score=101.10 Aligned_cols=87 Identities=24% Similarity=0.309 Sum_probs=80.7
Q ss_pred CceEEEEccCcceecccHHHHHHHHHHHhhhc--CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHH
Q psy2736 106 GIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQ--GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVV 183 (211)
Q Consensus 106 ~~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~--~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~ 183 (211)
+.++.+++++|+++|.|++.+++.+.+..+.. ++.+||||++++++|++|++.|.++.++++++|+++.++++++.+.
T Consensus 7 ~~~~~v~~l~G~l~~~~~~~l~~~~~~~~~~~~~~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~~~l~~~~~~~~ 86 (107)
T cd07042 7 PPGVLIYRIDGPLFFGNAEYFKDRLLRLVDEDPPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVELYLAGLNPQVR 86 (107)
T ss_pred CCCEEEEEecCceEeehHHHHHHHHHHHhccCCCceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCEEEEecCCHHHH
Confidence 45689999999999999999999999887654 3789999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCC
Q psy2736 184 AVFEGVQPK 192 (211)
Q Consensus 184 ~~l~~~g~~ 192 (211)
+.|+.+|..
T Consensus 87 ~~l~~~g~~ 95 (107)
T cd07042 87 ELLERAGLL 95 (107)
T ss_pred HHHHHcCcH
Confidence 999999953
No 12
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=99.53 E-value=7.4e-14 Score=98.90 Aligned_cols=90 Identities=18% Similarity=0.146 Sum_probs=82.4
Q ss_pred eEEEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHh
Q psy2736 108 EYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFE 187 (211)
Q Consensus 108 ~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~ 187 (211)
++.+++++|+++|.+++.|.+.+.+..++.++.+++|++.++++|++|+..|.++.++++++|.++.+++++++++++|+
T Consensus 8 ~~~ii~l~G~l~~~~~~~~~~~~~~~~~~~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~~~~~~~~l~ 87 (99)
T cd07043 8 GVLVVRLSGELDAATAPELREALEELLAEGPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVSPAVRRVLE 87 (99)
T ss_pred CEEEEEEeceecccchHHHHHHHHHHHHcCCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 57899999999999999999999888765458999999999999999999999999999999999999999999999999
Q ss_pred hcCCCC-eEEe
Q psy2736 188 GVQPKD-FVVY 197 (211)
Q Consensus 188 ~~g~~~-~~i~ 197 (211)
++|+.+ +.++
T Consensus 88 ~~gl~~~~~i~ 98 (99)
T cd07043 88 LTGLDRLFPIY 98 (99)
T ss_pred HhCcceeeecc
Confidence 999654 4554
No 13
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=99.46 E-value=6.3e-13 Score=97.92 Aligned_cols=99 Identities=19% Similarity=0.153 Sum_probs=87.3
Q ss_pred EEEccCcceecccHHHHHHHHHHHhhhcC-CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhh
Q psy2736 110 LLLTPDRCLIFPSVDYVSNLVTKHSIKQG-IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEG 188 (211)
Q Consensus 110 ~v~~~~g~L~F~n~~~~~~~l~~~~~~~~-~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~ 188 (211)
.++.+.|+|+..++..|++.+.+...+.. +.++||++.|+|+|++|++.|...++.++..|+++.+++++|++.+.++.
T Consensus 15 ~vl~l~G~lD~~~a~~~~e~~~~~~~~~~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~p~v~~~~~~ 94 (117)
T COG1366 15 LVLPLIGELDAARAPALKETLLEVIAASGARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQPEVARTLEL 94 (117)
T ss_pred EEEEeeEEEchHHHHHHHHHHHHHHhcCCCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 68999999999999999999997765543 56999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-eEEecChHHHHHHHh
Q psy2736 189 VQPKD-FVVYYDSRELDHLLR 208 (211)
Q Consensus 189 ~g~~~-~~i~~~~~ea~~~l~ 208 (211)
+|... +.++++.+++...+.
T Consensus 95 ~gl~~~~~~~~~~~~~~~~~~ 115 (117)
T COG1366 95 TGLDKSFIITPTELEAALALL 115 (117)
T ss_pred hCchhhcccccchHHHHHHhc
Confidence 99654 577776666665543
No 14
>PF13466 STAS_2: STAS domain
Probab=99.36 E-value=3.8e-12 Score=87.26 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=74.4
Q ss_pred EccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhhcCC
Q psy2736 112 LTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQP 191 (211)
Q Consensus 112 ~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g~ 191 (211)
+++.|++++.+++.+++.+.+..+.+ +.++||+++|.++|++|++.|..+.+.++++|.++.+.++++.++++++.+|+
T Consensus 1 l~l~G~l~~~~~~~l~~~l~~~~~~~-~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l~~~~~~~~~ll~~~gl 79 (80)
T PF13466_consen 1 LRLSGELDIATAPELRQALQALLASG-RPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRLTGPSPALRRLLELLGL 79 (80)
T ss_pred CEEEEEEeHHHHHHHHHHHHHHHcCC-CeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhCc
Confidence 46889999999999999999998653 79999999999999999999999999999999999999999999999999885
No 15
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=98.66 E-value=2.6e-08 Score=88.26 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=52.5
Q ss_pred CcchHHHHHhHhHHHhhhcCCcccccchhh-hHHhhhcCCCccchhhhhhc------------------ccchhHHHHHH
Q psy2736 6 DATQEILAVGVCNLASCFFQAYPVSGSISR-SAVQSVSGVRTPMVGIYTAH------------------GKSVDATQEIL 66 (211)
Q Consensus 6 d~nqEl~a~G~~N~~~~~~g~~p~~~s~sr-s~~n~~~G~~t~~s~~~~~~------------------P~~~La~ili~ 66 (211)
+.|||+.++|++|+++|+||++|.++ +++ ++++..+|++||++++++++ |++++++++++
T Consensus 254 ~~~~~l~~~Gi~~i~aglfG~~p~t~-~~~~~~~~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~ 332 (406)
T TIGR03173 254 DLAGGLRADGLGSALGGLFNTFPYTS-FSQNVGLVQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLV 332 (406)
T ss_pred hccchHHhccHHHHHHHHhCCCCCcc-hhhhHHHHHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35799999999999999999999886 555 56888899999999988886 99999997775
No 16
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=98.46 E-value=1.3e-07 Score=84.07 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=56.6
Q ss_pred cchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc------------------ccchhHHHHHHHH
Q psy2736 7 ATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH------------------GKSVDATQEILAV 68 (211)
Q Consensus 7 ~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~------------------P~~~La~ili~~~ 68 (211)
.|||+.+.|++|+++|+||++|.+++..++.++..+|.+||++.+++|+ |.++++|++++..
T Consensus 271 ~~r~l~adGl~~i~aglfG~~p~t~~sen~g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~ 350 (415)
T TIGR00801 271 LHRGVLADGLATLLAGLFGGFPNTTFAQNIGVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMF 350 (415)
T ss_pred ccchHHHhhHHHHHHHhcCCCCCcchhhhheeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999997777776 9999999888544
No 17
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=98.35 E-value=2.2e-06 Score=60.18 Aligned_cols=83 Identities=12% Similarity=0.009 Sum_probs=71.6
Q ss_pred EEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhhcC
Q psy2736 111 LLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQ 190 (211)
Q Consensus 111 v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g 190 (211)
-+.+.|+|+-.+...+=+.......+ ...+-+|+++|..+||+|+..|.++++.++++|..+.+.++++.++...+.++
T Consensus 13 tL~LsGeL~r~tl~~lw~~r~~~~~~-~~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~~~~L~~~p~~L~tLa~Ly~ 91 (99)
T COG3113 13 TLVLSGELDRDTLLPLWSQREAQLKQ-LDTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGNAVTLTGVPEQLRTLAELYN 91 (99)
T ss_pred eEEEeccccHHHHHHHHHHHHHHccc-cCeEEEehhhcceechHHHHHHHHHHHHHHHcCCeeEEecCcHHHHHHHHHhC
Confidence 46789999988887776666555432 25888999999999999999999999999999999999999999999999999
Q ss_pred CCCe
Q psy2736 191 PKDF 194 (211)
Q Consensus 191 ~~~~ 194 (211)
+.++
T Consensus 92 l~~~ 95 (99)
T COG3113 92 LSDW 95 (99)
T ss_pred cHhh
Confidence 7654
No 18
>PRK10720 uracil transporter; Provisional
Probab=97.87 E-value=1e-05 Score=72.34 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=48.2
Q ss_pred cCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhh----hhc------------------ccchhH
Q psy2736 4 SVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIY----TAH------------------GKSVDA 61 (211)
Q Consensus 4 ~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~----~~~------------------P~~~La 61 (211)
+.|.|||+.+.|++|+++|+||++|.++ ++-|...++.|++++-+ +++ |.||++
T Consensus 259 ~~~~~r~l~adGlatii~glfG~~p~tt----y~en~g~ia~T~v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlg 334 (428)
T PRK10720 259 DPGLHRSMFANGLSTVISGFFGSTPNTT----YGENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMG 334 (428)
T ss_pred CccccchHhhhhHHHHHHHhcCCCCccc----cccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4578999999999999999999999998 55566666666665543 332 999999
Q ss_pred HHHHHHH
Q psy2736 62 TQEILAV 68 (211)
Q Consensus 62 ~ili~~~ 68 (211)
|+.++..
T Consensus 335 g~~i~~f 341 (428)
T PRK10720 335 GVSLLLY 341 (428)
T ss_pred HHHHHHH
Confidence 9998654
No 19
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=97.51 E-value=5.6e-05 Score=67.60 Aligned_cols=63 Identities=16% Similarity=0.114 Sum_probs=46.9
Q ss_pred CCcCCc--chHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchh----hhhhc------------------cc
Q psy2736 2 GKSVDA--TQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVG----IYTAH------------------GK 57 (211)
Q Consensus 2 ~~~~d~--nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~----~~~~~------------------P~ 57 (211)
+++.|+ +||+.+.|++|+++|+||+.|.+.. +-|...++.|++++ ...++ |.
T Consensus 275 ~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~----~en~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~ 350 (429)
T TIGR03616 275 GRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTY----AENIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPV 350 (429)
T ss_pred CCCCCchhccchhhhhHHHHHHHhcCCCCCcce----eeeeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 345565 8999999999999999999887644 56666666666663 22222 99
Q ss_pred chhHHHHHHHH
Q psy2736 58 SVDATQEILAV 68 (211)
Q Consensus 58 ~~La~ili~~~ 68 (211)
|+++|++++..
T Consensus 351 pVlgG~~i~~f 361 (429)
T TIGR03616 351 AVLGGASIVVF 361 (429)
T ss_pred HHHHHHHHHHH
Confidence 99999998554
No 20
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=96.31 E-value=0.0045 Score=55.50 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=56.7
Q ss_pred CcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc------------------ccchhHHHHHHH
Q psy2736 6 DATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH------------------GKSVDATQEILA 67 (211)
Q Consensus 6 d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~------------------P~~~La~ili~~ 67 (211)
+.+|-+.+-|++++++|+||++|.+..-....+-..+|.++|+....+|+ |.||++|+.++.
T Consensus 276 ~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~TgV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~ 355 (433)
T PRK11412 276 RYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVS 355 (433)
T ss_pred ccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 56888999999999999999999998888889999999999999888876 999999988775
Q ss_pred H
Q psy2736 68 V 68 (211)
Q Consensus 68 ~ 68 (211)
.
T Consensus 356 F 356 (433)
T PRK11412 356 Y 356 (433)
T ss_pred H
Confidence 5
No 21
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=96.21 E-value=0.0055 Score=54.14 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=50.3
Q ss_pred cCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc------------------ccchhHHHHH
Q psy2736 4 SVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH------------------GKSVDATQEI 65 (211)
Q Consensus 4 ~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~------------------P~~~La~ili 65 (211)
+.+.+|=+.+.|++++++|+||+.|.+....-...-...|.++|..++.+++ |.++++|..+
T Consensus 266 ~~~~~r~l~~dg~~~~l~gl~G~~~~t~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~l 345 (389)
T PF00860_consen 266 PPRIRRGLLADGLGTILAGLFGTSPTTTYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLL 345 (389)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHH
T ss_pred chhhcccceeeeeeeeechhhcCCCCccccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchH
Confidence 5668899999999999999999999998888888888888999998887776 9999888776
Q ss_pred HHH
Q psy2736 66 LAV 68 (211)
Q Consensus 66 ~~~ 68 (211)
+..
T Consensus 346 v~~ 348 (389)
T PF00860_consen 346 VLF 348 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 22
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=95.68 E-value=0.014 Score=41.62 Aligned_cols=101 Identities=13% Similarity=0.066 Sum_probs=68.1
Q ss_pred EEEEccCcceecccHHHHHHHHHHHhhhcC-CcEEEecC-CCcccchHHHHHHHHHHHHHHhcCCcEEEEecCh---hHH
Q psy2736 109 YLLLTPDRCLIFPSVDYVSNLVTKHSIKQG-IPVVVDCS-HIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKP---SVV 183 (211)
Q Consensus 109 i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~-~~vIlD~s-~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~---~v~ 183 (211)
+..++++|.+.-....++.+.+.+..++.+ -.+.+|++ .+..++..+.....++......+=.++.+++-++ .+.
T Consensus 2 il~v~~~g~~t~ed~~~~~~~~~~~~~~~~~~~ll~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~r~AvV~~~~~~~~~~ 81 (109)
T PF11964_consen 2 ILAVRVSGKLTEEDYKELLPALEELIADHGKIRLLVDLRRDFEGWSPEARWEDAKFGLKHLKHFRRIAVVGDSEWIRMIA 81 (109)
T ss_dssp -EEEEEEEEE-HHHHHHHHHHHHHHHTTSSSEEEEEEEC-CEEEEHHHHHHHHHHHHCCCCGGEEEEEEE-SSCCCHHHH
T ss_pred EEEEEEeeeeCHHHHHHHHHHHHHHHhcCCceEEEEEecCccCCCCHHHHHHHHHhchhhhcccCEEEEEECcHHHHHHH
Confidence 578899999999999999999999876544 57999999 8888887665555543322111113567776654 333
Q ss_pred HHHhhcCCCCeEEe--cChHHHHHHHhh
Q psy2736 184 AVFEGVQPKDFVVY--YDSRELDHLLRS 209 (211)
Q Consensus 184 ~~l~~~g~~~~~i~--~~~~ea~~~l~~ 209 (211)
+.+........++| ++.+||.+-|++
T Consensus 82 ~~~~~~~~~~~~~F~~~~~~~A~~WL~e 109 (109)
T PF11964_consen 82 NFFAAFPPIEVRYFPPDEEEEALAWLRE 109 (109)
T ss_dssp HHHHHH-SSEEEEE--SSHHHHHHHHC-
T ss_pred HHHHhcCCCceEEECCCCHHHHHHHHcC
Confidence 44444434567999 999999998864
No 23
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=95.54 E-value=0.096 Score=35.05 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHH-HHHHHHHHHH--hcCCcEEEEecChhHHHHHhhc
Q psy2736 122 SVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAK-VIEVLCQNFS--RRGQPLFFFNLKPSVVAVFEGV 189 (211)
Q Consensus 122 n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~-~L~~~~~~~~--~~g~~l~l~~~~~~v~~~l~~~ 189 (211)
+...+++.+.+.+++ .+.|+||++++..+-++-+. ++..+++++. .-..++.+.++++.+.+++++.
T Consensus 2 ~G~~~~~~i~~~l~~-~~~V~lDF~gv~~~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I~~v 71 (74)
T PF14213_consen 2 DGERLRDEIEPALKE-GEKVVLDFEGVESITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMIKRV 71 (74)
T ss_pred ChHHHHHHHHHHHhc-CCeEEEECCCcccccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHHHHH
Confidence 356778888887765 35699999999888888665 5555555543 2345799999999999988764
No 24
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=94.11 E-value=0.024 Score=50.82 Aligned_cols=64 Identities=19% Similarity=0.206 Sum_probs=55.1
Q ss_pred CCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc------------------ccchhHHHHHH
Q psy2736 5 VDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH------------------GKSVDATQEIL 66 (211)
Q Consensus 5 ~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~------------------P~~~La~ili~ 66 (211)
-+..|-+++-|++.+++|+|+++|.+..=-...+-..+|.+||......|+ |.+||+|+.++
T Consensus 280 ~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sIP~pVlGGa~iv 359 (451)
T COG2233 280 PRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQSIPSPVLGGAMLV 359 (451)
T ss_pred cccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhCChhhhhHHHHH
Confidence 455777899999999999999999998888888888899999988877776 99999988877
Q ss_pred HH
Q psy2736 67 AV 68 (211)
Q Consensus 67 ~~ 68 (211)
.-
T Consensus 360 mF 361 (451)
T COG2233 360 LF 361 (451)
T ss_pred HH
Confidence 65
No 25
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=94.04 E-value=0.097 Score=46.34 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=38.9
Q ss_pred CCCcCCcchHHHHHhHhHHHhhhcCCcccccchhhhHH-----hhhcCCCccchhhhhhc
Q psy2736 1 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAV-----QSVSGVRTPMVGIYTAH 55 (211)
Q Consensus 1 ~~~~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~-----n~~~G~~t~~s~~~~~~ 55 (211)
+||+.+.++=+...|++|+++++|||++.+-+=--+++ ..+-++|.=.+++.+++
T Consensus 250 aGy~~p~~~~~~~tGl~sll~ApfGg~~~nlaaitaAic~G~~ah~d~~rR~~a~i~~Gv 309 (395)
T TIGR00843 250 AGYNAPAKPIIAAAGLAALFAAFAGGISIGIAAITAAICMGKDAHEDKDKRWIAAAAAGI 309 (395)
T ss_pred cCCCCCchHHHHHHHHHHHHHhccCCchhhhhHHhHHHhcCcccccCcCccchHHHHHHH
Confidence 58899999999999999999999999993222111222 22225666777777776
No 26
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=92.18 E-value=0.25 Score=35.10 Aligned_cols=69 Identities=9% Similarity=0.102 Sum_probs=55.3
Q ss_pred EEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEec-----ChhHHHHHhhcCCC--CeEEecChHHHHHHHhh
Q psy2736 141 VVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNL-----KPSVVAVFEGVQPK--DFVVYYDSRELDHLLRS 209 (211)
Q Consensus 141 vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~-----~~~v~~~l~~~g~~--~~~i~~~~~ea~~~l~~ 209 (211)
+++|+.+|-+-+...+..=.++++.++++|.+++|..= +++..+.|+..|+. .-.++.+-..+.++|++
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~ 76 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKE 76 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHH
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHh
Confidence 58999999999998888889999999999999888732 26788888999953 23677778888888876
No 27
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=89.85 E-value=0.4 Score=46.67 Aligned_cols=62 Identities=16% Similarity=0.048 Sum_probs=49.8
Q ss_pred cchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhc-----------------CC-Cccchhhhhhc-------------
Q psy2736 7 ATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVS-----------------GV-RTPMVGIYTAH------------- 55 (211)
Q Consensus 7 ~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~-----------------G~-~t~~s~~~~~~------------- 55 (211)
.+-+|+-+|+.|.++|+||--+.+|+..||..-.++ +. .+|+++++.++
T Consensus 692 yH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLiglsv~~~PvL~ 771 (900)
T TIGR00834 692 FHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLVGLSILMEPILK 771 (900)
T ss_pred cchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHHHHHHHHHHHHHh
Confidence 355799999999999999999999998887654432 22 27888887765
Q ss_pred --ccchhHHHHHHHH
Q psy2736 56 --GKSVDATQEILAV 68 (211)
Q Consensus 56 --P~~~La~ili~~~ 68 (211)
|++||+|+-++-+
T Consensus 772 ~IP~aVL~GvFlYMG 786 (900)
T TIGR00834 772 RIPLAVLFGIFLYMG 786 (900)
T ss_pred hccHHHHHHHHHHHH
Confidence 9999999998876
No 28
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=89.82 E-value=0.55 Score=42.05 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=53.4
Q ss_pred CCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc---------------ccchhHHHHHHHH
Q psy2736 5 VDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH---------------GKSVDATQEILAV 68 (211)
Q Consensus 5 ~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~---------------P~~~La~ili~~~ 68 (211)
-|.+|-|.+-+++-++|+++|.-|++ ++--|+.....|+||-++.++.++ |-.+-+..+++++
T Consensus 282 ~~~~~al~~D~v~t~~ga~~GtS~~t-~yIESaaGva~GgrTGltavv~g~lFl~~lf~~Pl~~~vP~~AtapaLi~vG 359 (436)
T COG2252 282 PRIGKALLADSVATVVGALFGTSTVT-AYIESAAGVAAGGRTGLTAVVTGLLFLLSLFFSPLAALVPGYATAPALIIVG 359 (436)
T ss_pred cccchHHHHhHHHHHHHHhcCCcchh-hhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHhCcHhhhhHHHHHHH
Confidence 47889999999999999999999887 456688889999999999999997 7666666666665
No 29
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=89.48 E-value=0.97 Score=39.75 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=35.9
Q ss_pred CCCcCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhc
Q psy2736 1 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVS 42 (211)
Q Consensus 1 ~~~~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~ 42 (211)
+||+.+.|.=+..-|+++++.++|||++.+-+=--+++...-
T Consensus 234 ~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nlAaitaAIc~g~ 275 (378)
T PF03594_consen 234 AGYQPPVNPLITVTGLASLLAAPFGGHAVNLAAITAAICAGP 275 (378)
T ss_pred cCCCCCchHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHcCC
Confidence 689999999999999999999999999988666666665543
No 30
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=83.12 E-value=7.5 Score=31.02 Aligned_cols=65 Identities=12% Similarity=0.109 Sum_probs=48.2
Q ss_pred EEEEccCccee---cccHHHHHHHHHHHhhhc-CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEE
Q psy2736 109 YLLLTPDRCLI---FPSVDYVSNLVTKHSIKQ-GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLF 174 (211)
Q Consensus 109 i~v~~~~g~L~---F~n~~~~~~~l~~~~~~~-~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~ 174 (211)
+.+++++|.+. -....++.+.+.++..++ .+.|+|+... ...|....+.+.+.++.+++.+.+++
T Consensus 2 v~vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s-~Gg~~~~~~~i~~~i~~~~~~~kpvi 70 (208)
T cd07023 2 IAVIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINS-PGGSVVASEEIYREIRRLRKAKKPVV 70 (208)
T ss_pred EEEEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEEC-CCCCHHHHHHHHHHHHHHHhcCCcEE
Confidence 56888999998 778889999998876543 3778887764 45677777777777777777666554
No 31
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=82.68 E-value=6.7 Score=27.85 Aligned_cols=65 Identities=6% Similarity=-0.025 Sum_probs=49.2
Q ss_pred EEEccCcceecccHHHHHHHHHHHhh----hcCCcEEEecCCCcccchHHHHHHHHHHHHH---HhcCCcEEE
Q psy2736 110 LLLTPDRCLIFPSVDYVSNLVTKHSI----KQGIPVVVDCSHIYGADFTAAKVIEVLCQNF---SRRGQPLFF 175 (211)
Q Consensus 110 ~v~~~~g~L~F~n~~~~~~~l~~~~~----~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~---~~~g~~l~l 175 (211)
.++++.|.=+=-|+..|-+-+.+.++ ++.+.+.+++. +.|+++|..++|.++.+.+ .+.|.++.+
T Consensus 10 g~l~i~GeSypEn~~~Fy~Pi~~wl~~Yl~~~~~~i~~~~~-L~YfNTSSsk~l~~i~~~Le~~~~~g~~V~v 81 (99)
T PF09345_consen 10 GRLEISGESYPENAFAFYQPILDWLEAYLAEPNKPITFNFK-LSYFNTSSSKALMDIFDLLEDAAQKGGKVTV 81 (99)
T ss_pred CEEEEecccCccCHHHHHHHHHHHHHHHHhCCCCcEEEEEE-EEEEecHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 47888998888888887776666654 33478999994 9999999999998887766 556666543
No 32
>KOG1172|consensus
Probab=82.59 E-value=1.7 Score=42.01 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=47.7
Q ss_pred hHHHHHhHhHHHhhhcCCcccccchhhhHHhhhc-----------------CCC-ccchhhhhhc---------------
Q psy2736 9 QEILAVGVCNLASCFFQAYPVSGSISRSAVQSVS-----------------GVR-TPMVGIYTAH--------------- 55 (211)
Q Consensus 9 qEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~-----------------G~~-t~~s~~~~~~--------------- 55 (211)
=+|+-+|+.|.+||+||=-+..|+..+|-.-.++ |.| .|++|++.++
T Consensus 670 ~DLlllgil~~icsllGLPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvgls~~~~pvL~~I 749 (876)
T KOG1172|consen 670 LDLLLLGILTLICSLLGLPWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVGLSVLLLPVLKLI 749 (876)
T ss_pred HHHHHHHHHHHHHHhcCCCccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 4689999999999999999999999888655443 232 5777777665
Q ss_pred ccchhHHHHHHHH
Q psy2736 56 GKSVDATQEILAV 68 (211)
Q Consensus 56 P~~~La~ili~~~ 68 (211)
|+|||.|+-.+-+
T Consensus 750 P~~VL~GvFlYMg 762 (876)
T KOG1172|consen 750 PMPVLYGVFLYMG 762 (876)
T ss_pred cHHHHHHHHHHHh
Confidence 9999998888765
No 33
>KOG3040|consensus
Probab=80.92 E-value=2.4 Score=34.50 Aligned_cols=72 Identities=10% Similarity=0.038 Sum_probs=55.2
Q ss_pred CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEe-c----ChhHHHHHhhcCCC--CeEEecChHHHHHHHhhh
Q psy2736 139 IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFN-L----KPSVVAVFEGVQPK--DFVVYYDSRELDHLLRSK 210 (211)
Q Consensus 139 ~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~-~----~~~v~~~l~~~g~~--~~~i~~~~~ea~~~l~~~ 210 (211)
+-+.||+|++-++.-.++-.=.+..+.++.++..+.|+. . +..+.+.|+++|.+ .-.||.+...|.++++++
T Consensus 8 ~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~ 86 (262)
T KOG3040|consen 8 KGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEEN 86 (262)
T ss_pred ceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhc
Confidence 579999999999866666666677788888899988873 2 45677778888843 236888888898888764
No 34
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=80.09 E-value=0.55 Score=43.05 Aligned_cols=34 Identities=9% Similarity=0.208 Sum_probs=0.0
Q ss_pred chHHHHHhHhHHHhhhcCCcccccchhhhHHhhh
Q psy2736 8 TQEILAVGVCNLASCFFQAYPVSGSISRSAVQSV 41 (211)
Q Consensus 8 nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~ 41 (211)
.-+|.-+|+.|.++|++|--+.+|+..||..-.+
T Consensus 374 H~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~ 407 (510)
T PF00955_consen 374 HLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVR 407 (510)
T ss_dssp ----------------------------------
T ss_pred cHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhC
Confidence 3468899999999999999999999888876554
No 35
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=79.91 E-value=4.1 Score=33.58 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=46.8
Q ss_pred CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEe-----cChhHHHHHhhcCCCC--eEEecChHHHHHHHhh
Q psy2736 139 IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFN-----LKPSVVAVFEGVQPKD--FVVYYDSRELDHLLRS 209 (211)
Q Consensus 139 ~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~-----~~~~v~~~l~~~g~~~--~~i~~~~~ea~~~l~~ 209 (211)
+.+++|+.++-+-+...+..=.+.+++++++|++++|+. ..+.+.+.|+..|... -.|+.+...+.++|++
T Consensus 2 ~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l~~ 79 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATADYMND 79 (249)
T ss_pred CEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHHHHHh
Confidence 357778877665444333333577788888999988873 3566777888888532 2466666666677765
No 36
>COG5439 Uncharacterized conserved protein [Function unknown]
Probab=79.26 E-value=4.1 Score=28.63 Aligned_cols=51 Identities=2% Similarity=0.003 Sum_probs=38.9
Q ss_pred HHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhc-CCcEEEEecCh
Q psy2736 130 VTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRR-GQPLFFFNLKP 180 (211)
Q Consensus 130 l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~-g~~l~l~~~~~ 180 (211)
..+....+|...++|+.+..++.+||+..|..+.-+.+++ +.++++-|-++
T Consensus 38 ~~~~L~a~ps~mtinL~gL~FLNSSGInlLakftievRk~pd~~fvvrGs~~ 89 (112)
T COG5439 38 MLEILSADPSEMTINLEGLEFLNSSGINLLAKFTIEVRKKPDTSFVVRGSKN 89 (112)
T ss_pred HHHHHhcChHHhEEecccceeecccchHHHHhhhhhhhcCCCceEEEecCCC
Confidence 3344444567899999999999999999999997777654 56777766544
No 37
>PRK10444 UMP phosphatase; Provisional
Probab=78.63 E-value=4.8 Score=33.27 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=48.0
Q ss_pred CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEec-----ChhHHHHHhhcCC--CCeEEecChHHHHHHHhh
Q psy2736 139 IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNL-----KPSVVAVFEGVQP--KDFVVYYDSRELDHLLRS 209 (211)
Q Consensus 139 ~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~-----~~~v~~~l~~~g~--~~~~i~~~~~ea~~~l~~ 209 (211)
+.+++|+.++-+-+-.....-.+.++.++++|++++|+.= .++..+.|++.|. ..-.++.+...+.++|++
T Consensus 2 ~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~ 79 (248)
T PRK10444 2 KNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRR 79 (248)
T ss_pred cEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHh
Confidence 4578888888776655566666778888888998887732 2346666777774 223466666666777765
No 38
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=78.15 E-value=26 Score=26.09 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=57.0
Q ss_pred EEEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCC--cEEEEe--cChhHHH
Q psy2736 109 YLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQ--PLFFFN--LKPSVVA 184 (211)
Q Consensus 109 i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~--~l~l~~--~~~~v~~ 184 (211)
+-|+.+.. |-+.+.+-+... ++.++.+.+ +.+|.+-...+.++.+.+++++. ..++++ ..++-.+
T Consensus 31 feVi~lg~---~~s~e~~v~aa~---e~~adii~i-----Ssl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~ 99 (132)
T TIGR00640 31 FDVDVGPL---FQTPEEIARQAV---EADVHVVGV-----SSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFD 99 (132)
T ss_pred cEEEECCC---CCCHHHHHHHHH---HcCCCEEEE-----cCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHH
Confidence 34444443 355666655444 333344444 45677788889999999988864 346666 5666678
Q ss_pred HHhhcCCCC-eEEecChHHHHHHHhh
Q psy2736 185 VFEGVQPKD-FVVYYDSRELDHLLRS 209 (211)
Q Consensus 185 ~l~~~g~~~-~~i~~~~~ea~~~l~~ 209 (211)
.|+..|... |..=.+..|..+++.+
T Consensus 100 ~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 100 ELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred HHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 899999654 4555567777766654
No 39
>PLN02645 phosphoglycolate phosphatase
Probab=78.12 E-value=11 Score=32.06 Aligned_cols=72 Identities=14% Similarity=0.121 Sum_probs=49.6
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEec-----ChhHHHHHhhcCCCC--eEEecChHHHHHHHhh
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNL-----KPSVVAVFEGVQPKD--FVVYYDSRELDHLLRS 209 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~-----~~~v~~~l~~~g~~~--~~i~~~~~ea~~~l~~ 209 (211)
-+.+++|+.++-+-+......-.+.++.++++|++++|+.= .+++.+.|+..|... -.|+.+...+..++++
T Consensus 28 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~~~~~~l~~ 106 (311)
T PLN02645 28 VETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSFAAAAYLKS 106 (311)
T ss_pred CCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHHHHHHHHHh
Confidence 37899999998877655556567888889999999877742 244556667777432 2566666666666653
No 40
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=77.86 E-value=16 Score=29.17 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=43.9
Q ss_pred EEEEccCcceecccHHHHHHHHHHHhhhc-CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEE
Q psy2736 109 YLLLTPDRCLIFPSVDYVSNLVTKHSIKQ-GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLF 174 (211)
Q Consensus 109 i~v~~~~g~L~F~n~~~~~~~l~~~~~~~-~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~ 174 (211)
+.+++++|.+. .+.+++.+.+.++.+++ .+.|+|+... ..-|....+.|.+.+++++ .+.+++
T Consensus 2 v~vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s-~Gg~~~~~~~l~~~i~~~~-~~kpvi 65 (207)
T TIGR00706 2 IAILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINS-PGGTVVASEEIYEKLKKLK-AKKPVV 65 (207)
T ss_pred EEEEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecC-CCCCHHHHHHHHHHHHHhc-CCCCEE
Confidence 57889999998 78888988888876543 3678888763 4456666666666666665 244443
No 41
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=77.22 E-value=8.9 Score=29.05 Aligned_cols=56 Identities=13% Similarity=0.060 Sum_probs=41.0
Q ss_pred EEccCcceecccHHHHHHHHHHHhhhcC-CcEEEecCCCcccchHHHHHHHHHHHHHH
Q psy2736 111 LLTPDRCLIFPSVDYVSNLVTKHSIKQG-IPVVVDCSHIYGADFTAAKVIEVLCQNFS 167 (211)
Q Consensus 111 v~~~~g~L~F~n~~~~~~~l~~~~~~~~-~~vIlD~s~v~~iD~t~l~~L~~~~~~~~ 167 (211)
+++++|++.-.+.+++.+.+.++..++. +.|+|+... ..-|.+....|.+.+++++
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s-~Gg~~~~~~~i~~~l~~~~ 57 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNT-PGGRVDAGMNIVDALQASR 57 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEEC-CCcCHHHHHHHHHHHHHhC
Confidence 4678999999999999999998865543 678887753 2346666666666666554
No 42
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=76.33 E-value=15 Score=29.54 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=37.8
Q ss_pred ccHHHHHHHHHHHhhhcC-CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEE
Q psy2736 121 PSVDYVSNLVTKHSIKQG-IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFF 176 (211)
Q Consensus 121 ~n~~~~~~~l~~~~~~~~-~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~ 176 (211)
.+.+.+.+.+++..+++. +.|+|+... ...|.+.++.+.+.++.+++.+.+++-+
T Consensus 21 ~~~~~l~~~l~~a~~d~~v~~ivL~~~s-~Gg~~~~~~~~~~~l~~~~~~~kpVia~ 76 (211)
T cd07019 21 VGGDTTAAQIRDARLDPKVKAIVLRVNS-PGGSVTASEVIRAELAAARAAGKPVVVS 76 (211)
T ss_pred cCHHHHHHHHHHHhhCCCceEEEEEEcC-CCcCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 345678888887765533 778887553 5678887777777777787776665443
No 43
>PHA03231 glycoprotein BALF4; Provisional
Probab=74.26 E-value=3.3 Score=40.07 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=47.4
Q ss_pred cCCcchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc------ccchhHHHHHHHH
Q psy2736 4 SVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH------GKSVDATQEILAV 68 (211)
Q Consensus 4 ~~d~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~------P~~~La~ili~~~ 68 (211)
.++.|+.=+-.|+++++.++ |+..+...|.-+|+-+-++++++|+ |...++-++++++
T Consensus 652 ~i~~~~~~~~~gl~~~~~gL-------G~vGk~vg~vv~~v~ga~~SiVsG~~sFl~NPFGg~~iillvia 715 (829)
T PHA03231 652 VIDNDRNAFVRGLAEFMQGL-------GAVGKAVGNVVSGVAGAVGSIVSGVISFLKNPFGGLAIGLLVIA 715 (829)
T ss_pred hhhcCchHHHHHHHHHHhhh-------hhhchhhhhhhhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 36667777777888777654 7788999999999999999999998 9888887777766
No 44
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=71.50 E-value=28 Score=29.01 Aligned_cols=71 Identities=7% Similarity=-0.002 Sum_probs=47.1
Q ss_pred ecccHHHHHHHHHHHhhhcC-----CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCc-EEEEecChhHHHHHhhcCC
Q psy2736 119 IFPSVDYVSNLVTKHSIKQG-----IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQP-LFFFNLKPSVVAVFEGVQP 191 (211)
Q Consensus 119 ~F~n~~~~~~~l~~~~~~~~-----~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~-l~l~~~~~~v~~~l~~~g~ 191 (211)
.-.+.+.+.+.+.+.+.+.| .+||||++.+..-.. .--|..+.+.++++|.. +-+.+.+++.++.-...|+
T Consensus 26 ~~~d~~~l~~~L~~ki~~aP~FF~~~PvVlDl~~l~~~~~--~~dl~~L~~~Lr~~gl~~vGV~g~~~~~~~~a~~~gL 102 (248)
T PRK04596 26 RTLDVPRLVQEMRERVTRAPKLFGRAAVILDFGGLSQVPD--LATAKALLDGLRSAGVLPVALAYGTSEIDLLSQQLGL 102 (248)
T ss_pred CCCCHHHHHHHHHHHHHhChHhhCCCcEEEEchhhcCccc--cccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHCCC
Confidence 33667888888888877654 689999999863110 01255567777788854 5566677776666555564
No 45
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=71.37 E-value=10 Score=31.67 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=50.2
Q ss_pred CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEE-e-c---ChhHHHHHhhcCCCC--eEEecChHHHHHHHhh
Q psy2736 139 IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFF-N-L---KPSVVAVFEGVQPKD--FVVYYDSRELDHLLRS 209 (211)
Q Consensus 139 ~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~-~-~---~~~v~~~l~~~g~~~--~~i~~~~~ea~~~l~~ 209 (211)
+.+++|+.++-+-+........+.+++++++|++++++ | . ..+..+.|++.|... -.++.+..-+.++|++
T Consensus 3 ~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~l~~ 80 (279)
T TIGR01452 3 QGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSALCAARLLRQ 80 (279)
T ss_pred cEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHHHHHHHHHHh
Confidence 46888999888766666666677888889999998777 3 2 234456778888432 3577777777777765
No 46
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=71.31 E-value=14 Score=27.28 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEec---------ChhHHHHHhhcCCCCe------------EEecChHHHHHHHh
Q psy2736 155 AAKVIEVLCQNFSRRGQPLFFFNL---------KPSVVAVFEGVQPKDF------------VVYYDSRELDHLLR 208 (211)
Q Consensus 155 ~l~~L~~~~~~~~~~g~~l~l~~~---------~~~v~~~l~~~g~~~~------------~i~~~~~ea~~~l~ 208 (211)
.+-.+...++.++++|+++.-.|+ ++.|.+.|+.-|...+ .-|||.+|+.+.+.
T Consensus 25 eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVdGeiv~~G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 25 ELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVDGEIVKTGRYPTNEELAEWLG 99 (123)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEETTEEEEESS---HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEECCEEEEecCCCCHHHHHHHhC
Confidence 556778888999999999999998 6788999998883322 14889999988754
No 47
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=71.27 E-value=14 Score=31.03 Aligned_cols=72 Identities=11% Similarity=0.073 Sum_probs=56.6
Q ss_pred CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEec----Chh-HHHHHhhcC-C-CCe-EEecChHHHHHHHhhh
Q psy2736 139 IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNL----KPS-VVAVFEGVQ-P-KDF-VVYYDSRELDHLLRSK 210 (211)
Q Consensus 139 ~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~----~~~-v~~~l~~~g-~-~~~-~i~~~~~ea~~~l~~~ 210 (211)
+.+++|+.+|-+-+.+.+..=.+.++.++++|++++|.-= +++ +.+.|+..+ . ..+ .|+.+-....++++++
T Consensus 9 ~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~ 88 (269)
T COG0647 9 DGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQ 88 (269)
T ss_pred CEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhh
Confidence 6799999999999999999999999999999999888722 334 777888844 3 223 6787777777777763
No 48
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=70.21 E-value=26 Score=28.06 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHhhhc-CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcE
Q psy2736 122 SVDYVSNLVTKHSIKQ-GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPL 173 (211)
Q Consensus 122 n~~~~~~~l~~~~~~~-~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l 173 (211)
....+.+.++++.+++ .+.|+|+... ..-|.+....+.+.++++++ +.++
T Consensus 26 ~~~~l~~~l~~a~~d~~i~~Vvl~~~s-~gg~~~~~~~l~~~l~~~~~-~KpV 76 (214)
T cd07022 26 SYEGIAAAIRAALADPDVRAIVLDIDS-PGGEVAGVFELADAIRAARA-GKPI 76 (214)
T ss_pred cHHHHHHHHHHHhhCCCCcEEEEEEeC-CCCcHHHHHHHHHHHHHHhc-CCCE
Confidence 4567777777765443 2678887754 33466677777777777765 4443
No 49
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=70.14 E-value=19 Score=29.26 Aligned_cols=70 Identities=7% Similarity=0.039 Sum_probs=46.4
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEE-ecChhH---HHHHhhcCCCC--e-EEecChHHHHHHH
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFF-NLKPSV---VAVFEGVQPKD--F-VVYYDSRELDHLL 207 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~-~~~~~v---~~~l~~~g~~~--~-~i~~~~~ea~~~l 207 (211)
.+.+++|+.++-+-.......-.+++++++++|+++.++ |-..+. .+.|++.|+.. + .|+-+.+.+.+++
T Consensus 8 ~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~~~l 84 (242)
T TIGR01459 8 YDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIAVQMI 84 (242)
T ss_pred CCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHHHHHH
Confidence 367999998877765556677788888899999988775 433322 26788888643 3 4555444334444
No 50
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=69.83 E-value=7.9 Score=21.68 Aligned_cols=23 Identities=17% Similarity=-0.016 Sum_probs=17.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHh
Q psy2736 56 GKSVDATQEILAVGVCNLASCFF 78 (211)
Q Consensus 56 P~~~La~ili~~~~~~t~~~~~~ 78 (211)
|+.+|+.+.+..+.+.+|+..++
T Consensus 5 p~Gal~vv~iLt~~ILvFWfgvf 27 (34)
T PF08113_consen 5 PKGALGVVMILTAFILVFWFGVF 27 (34)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceeeeHHHHHHHHHHHHHHHH
Confidence 78899999988887777765543
No 51
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=69.14 E-value=6.2 Score=33.05 Aligned_cols=61 Identities=25% Similarity=0.156 Sum_probs=50.4
Q ss_pred cchHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhcccchhHHHHHHHH
Q psy2736 7 ATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAHGKSVDATQEILAV 68 (211)
Q Consensus 7 ~nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~P~~~La~ili~~~ 68 (211)
.+-||..+|..|+.+ -..-=|.++|+--|.....+|-.++-+..-.|+|.+++.-.+...+
T Consensus 53 atLEL~~LG~~~iGg-avpPD~~~~si~~t~~aI~sg~~~~~~a~~lAiPiA~a~q~l~~~~ 113 (265)
T COG3715 53 ATLELAALGWANIGG-AVPPDVALASIIGTAFAITSGQGIPEAALALAIPIAVAGQFLTTFV 113 (265)
T ss_pred HHHHHHHHhCcCccc-CCCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 356999999999987 5555688999999999999998877776667789999888777765
No 52
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=68.96 E-value=11 Score=31.15 Aligned_cols=71 Identities=11% Similarity=0.079 Sum_probs=48.3
Q ss_pred CcEEEecCCCcccchH----HHHHHHHHHHHHHhcCCcEEEEe---cC--hhHHHHHhhcCCC--CeEEecChHHHHHHH
Q psy2736 139 IPVVVDCSHIYGADFT----AAKVIEVLCQNFSRRGQPLFFFN---LK--PSVVAVFEGVQPK--DFVVYYDSRELDHLL 207 (211)
Q Consensus 139 ~~vIlD~s~v~~iD~t----~l~~L~~~~~~~~~~g~~l~l~~---~~--~~v~~~l~~~g~~--~~~i~~~~~ea~~~l 207 (211)
+.+++|+.++-+-+.. ....=.+.+++++++|++++|+. .. +++.+.|+..|+. .-.++.+...+.++|
T Consensus 2 k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~l 81 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQLL 81 (257)
T ss_pred CEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHHHHHHHH
Confidence 4678888887765544 44555566777888999988875 22 3577788888843 225666677777777
Q ss_pred hh
Q psy2736 208 RS 209 (211)
Q Consensus 208 ~~ 209 (211)
++
T Consensus 82 ~~ 83 (257)
T TIGR01458 82 EE 83 (257)
T ss_pred Hh
Confidence 65
No 53
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=67.42 E-value=62 Score=25.87 Aligned_cols=93 Identities=13% Similarity=0.104 Sum_probs=66.3
Q ss_pred ccCcceecccHHHHHHHHHHHhhhc-CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHH---HHHhh
Q psy2736 113 TPDRCLIFPSVDYVSNLVTKHSIKQ-GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVV---AVFEG 188 (211)
Q Consensus 113 ~~~g~L~F~n~~~~~~~l~~~~~~~-~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~---~~l~~ 188 (211)
...|+..+.|+=+......+..... .|-|++=++.++..|-. -+.+.++.+++.++++-+.++..++. ++-++
T Consensus 75 ~~~G~~SLqN~Le~A~~~L~~~p~~~srEIlvi~gSl~t~Dp~---di~~ti~~l~~~~IrvsvI~laaEv~I~k~i~~~ 151 (193)
T PF04056_consen 75 EPSGEPSLQNGLEMARSSLKHMPSHGSREILVIFGSLTTCDPG---DIHETIESLKKENIRVSVISLAAEVYICKKICKE 151 (193)
T ss_pred CCCCChhHHHHHHHHHHHHhhCccccceEEEEEEeecccCCch---hHHHHHHHHHHcCCEEEEEEEhHHHHHHHHHHHh
Confidence 4677777777766666555543322 26677778889999976 46688999999999999999998874 33344
Q ss_pred cCCCCeEEecChHHHHHHHhh
Q psy2736 189 VQPKDFVVYYDSRELDHLLRS 209 (211)
Q Consensus 189 ~g~~~~~i~~~~~ea~~~l~~ 209 (211)
+| ..+.+.-+.+...+.|.+
T Consensus 152 T~-G~y~V~lde~H~~~lL~~ 171 (193)
T PF04056_consen 152 TG-GTYGVILDEDHFKELLME 171 (193)
T ss_pred hC-CEEEEecCHHHHHHHHHh
Confidence 44 456777777777776654
No 54
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=66.43 E-value=38 Score=29.09 Aligned_cols=66 Identities=11% Similarity=0.194 Sum_probs=49.9
Q ss_pred eEEEEccCcceeccc-------HHHHHHHHHHHhhhcC-CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEE
Q psy2736 108 EYLLLTPDRCLIFPS-------VDYVSNLVTKHSIKQG-IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFF 175 (211)
Q Consensus 108 ~i~v~~~~g~L~F~n-------~~~~~~~l~~~~~~~~-~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l 175 (211)
.+.+++++|.+.+.. .+...+.+++...++. +.|+|+.. -+.=...+.+.+.+.++++++++ +++.
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in-SPGG~v~as~~i~~~l~~l~~~~-PV~v 133 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN-SPGGSVVASELIARALKRLRAKK-PVVV 133 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE-CcCCchhHHHHHHHHHHHHhhcC-CEEE
Confidence 689999999998666 7778887877765443 77888876 45556668888888888888887 5443
No 55
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=66.40 E-value=15 Score=28.89 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=41.1
Q ss_pred EEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEE
Q psy2736 110 LLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLF 174 (211)
Q Consensus 110 ~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~ 174 (211)
.+++++|.+.....+++++.+.+..+++.+.++++++.--.. ......+ ++.+.+...+++
T Consensus 2 ~vi~i~g~I~~~~~~~l~~~l~~a~~~~~~~ivl~inspGG~-v~~~~~I---~~~l~~~~~pvv 62 (178)
T cd07021 2 YVIPIEGEIDPGLAAFVERALKEAKEEGADAVVLDIDTPGGR-VDSALEI---VDLILNSPIPTI 62 (178)
T ss_pred EEEEEeeEECHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCC-HHHHHHH---HHHHHhCCCCEE
Confidence 578999999999999999999988766457888888644333 3333333 344444444443
No 56
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=65.97 E-value=17 Score=32.76 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=52.4
Q ss_pred CceEEEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEec
Q psy2736 106 GIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNL 178 (211)
Q Consensus 106 ~~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~ 178 (211)
.+.+.+++++|.+.=++.+++++.+++..++....+|++++-=-..+.+.. ++.+...+..+++...-.
T Consensus 25 ~~~v~vi~i~g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPGGl~~sm~----~iv~~i~~s~vPV~~yv~ 93 (436)
T COG1030 25 EKKVYVIEIDGAIDPASADYLQRALQSAEEENAAAVVLELDTPGGLLDSMR----QIVRAILNSPVPVIGYVV 93 (436)
T ss_pred CCeEEEEEecCccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCchHHHHH----HHHHHHHcCCCCEEEEEc
Confidence 456899999999999999999999999877655889999986665655444 455666677777544433
No 57
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=65.38 E-value=70 Score=27.58 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=60.0
Q ss_pred eecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhhcCCCCeEEe
Q psy2736 118 LIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVY 197 (211)
Q Consensus 118 L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g~~~~~i~ 197 (211)
+.=...++|.+.+.+..++ ...|++--|-=+.+ ..+...++.+.++++|.++.+-.-.+.+++.|+.- .|-|-
T Consensus 111 is~~~~~~~l~~~~~~l~~-~d~VvlsGSlP~g~---~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~---P~lIK 183 (310)
T COG1105 111 ISEAELEQFLEQLKALLES-DDIVVLSGSLPPGV---PPDAYAELIRILRQQGAKVILDTSGEALLAALEAK---PWLIK 183 (310)
T ss_pred CCHHHHHHHHHHHHHhccc-CCEEEEeCCCCCCC---CHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccC---CcEEe
Confidence 5555667777777775544 36788888755555 34667788888888888887765556666666544 68899
Q ss_pred cChHHHHHHHhhh
Q psy2736 198 YDSRELDHLLRSK 210 (211)
Q Consensus 198 ~~~~ea~~~l~~~ 210 (211)
|+.+|+.+.+..+
T Consensus 184 PN~~EL~~~~g~~ 196 (310)
T COG1105 184 PNREELEALFGRE 196 (310)
T ss_pred cCHHHHHHHhCCC
Confidence 9999988876554
No 58
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=64.11 E-value=22 Score=29.64 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=39.1
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhhcC
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQ 190 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g 190 (211)
|+.++|| +....+|..+...+.++++++++.|..+.++.- ++..+.+.++
T Consensus 158 p~lllLD-EP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtH--DL~~v~~~~D 207 (254)
T COG1121 158 PDLLLLD-EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTH--DLGLVMAYFD 207 (254)
T ss_pred CCEEEec-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC--CcHHhHhhCC
Confidence 5777787 569999999999999999999999888887743 4444444444
No 59
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=63.25 E-value=73 Score=26.92 Aligned_cols=71 Identities=13% Similarity=0.197 Sum_probs=52.9
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecC-hhHHHHHhhcCC--C-CeEEecChHHHHHHHhh
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLK-PSVVAVFEGVQP--K-DFVVYYDSRELDHLLRS 209 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~-~~v~~~l~~~g~--~-~~~i~~~~~ea~~~l~~ 209 (211)
|..+|||= ..+.+|.--.+.|++.+.+++++|.+++|+.-. +++.++.++.-. . .-.++-+.+++......
T Consensus 149 PeLlILDE-PFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gk 223 (300)
T COG4152 149 PELLILDE-PFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGK 223 (300)
T ss_pred CCEEEecC-CccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCC
Confidence 67788884 588899999999999999999999999998554 566666666552 2 23566677776664433
No 60
>KOG2882|consensus
Probab=63.15 E-value=24 Score=30.25 Aligned_cols=73 Identities=8% Similarity=0.110 Sum_probs=56.4
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEec-----ChhHHHHHhhcCCCC---eEEecChHHHHHHHhh
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNL-----KPSVVAVFEGVQPKD---FVVYYDSRELDHLLRS 209 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~-----~~~v~~~l~~~g~~~---~~i~~~~~ea~~~l~~ 209 (211)
-.++++||.+|-+.-...+..-.+.++.+++.|.+++|+-= .++-.+.+++.|... -.||.+.-.+..+|++
T Consensus 22 ~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~ssa~~~a~ylk~ 101 (306)
T KOG2882|consen 22 FDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIFSSAYAIADYLKK 101 (306)
T ss_pred cCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCcccccChHHHHHHHHHH
Confidence 37899999999998888888888999999999998888732 244455667777432 3588888888888876
Q ss_pred h
Q psy2736 210 K 210 (211)
Q Consensus 210 ~ 210 (211)
.
T Consensus 102 ~ 102 (306)
T KOG2882|consen 102 R 102 (306)
T ss_pred h
Confidence 3
No 61
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=62.60 E-value=56 Score=23.59 Aligned_cols=79 Identities=6% Similarity=-0.026 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcC---CcEEEEe-cChhHHHHHhhcCCCC-eEEe
Q psy2736 123 VDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRG---QPLFFFN-LKPSVVAVFEGVQPKD-FVVY 197 (211)
Q Consensus 123 ~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g---~~l~l~~-~~~~v~~~l~~~g~~~-~~i~ 197 (211)
.+.+.+... +..++.|.+-++ |.+....+.++.+.+++.+ +.+++-| ..++..+.++..|.+. |+.=
T Consensus 39 ~e~~~~~a~---~~~~d~V~iS~~-----~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~ 110 (122)
T cd02071 39 PEEIVEAAI---QEDVDVIGLSSL-----SGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGPG 110 (122)
T ss_pred HHHHHHHHH---HcCCCEEEEccc-----chhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCC
Confidence 344444443 233566666444 5667777888888888884 3444443 4566678888999544 3555
Q ss_pred cChHHHHHHHhh
Q psy2736 198 YDSRELDHLLRS 209 (211)
Q Consensus 198 ~~~~ea~~~l~~ 209 (211)
.+.++.+.+|++
T Consensus 111 ~~~~~~~~~~~~ 122 (122)
T cd02071 111 TSIEEIIDKIRD 122 (122)
T ss_pred CCHHHHHHHHhC
Confidence 677777777753
No 62
>PRK01973 septum formation inhibitor; Reviewed
Probab=62.37 E-value=60 Score=27.42 Aligned_cols=68 Identities=9% Similarity=-0.028 Sum_probs=43.4
Q ss_pred ccHHHHHHHHHHHhhhcC-----CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhhcCC
Q psy2736 121 PSVDYVSNLVTKHSIKQG-----IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQP 191 (211)
Q Consensus 121 ~n~~~~~~~l~~~~~~~~-----~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g~ 191 (211)
...+.|.+.+.+.+.+.| .+||||++.+..-+. --|..+.+.+++.|...+=+..+++.++.-...|+
T Consensus 26 ~d~~~l~~~L~~ki~~aP~FF~~aPvVlDl~~l~~~~~---~dl~~L~~~lr~~gl~~VGV~g~~~~~~~a~~~gL 98 (271)
T PRK01973 26 ADLDALRAELVKRFEATPEFFADDVVAIDVRRLADDER---VPLDDIRQMLNDVRMRPIGVVAQPAQQGWAGEAGL 98 (271)
T ss_pred CCHHHHHHHHHHHHHhChHhhcCCCEEEEchHhCCCcc---cCHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 567778888888776653 689999999875331 12566677777778654433335555445555563
No 63
>PRK04516 minC septum formation inhibitor; Reviewed
Probab=62.07 E-value=50 Score=27.26 Aligned_cols=68 Identities=19% Similarity=0.147 Sum_probs=45.3
Q ss_pred ccHHHHHHHHHHHhhhcC----CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCc-EEEEecChhHHHHHhhcCC
Q psy2736 121 PSVDYVSNLVTKHSIKQG----IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQP-LFFFNLKPSVVAVFEGVQP 191 (211)
Q Consensus 121 ~n~~~~~~~l~~~~~~~~----~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~-l~l~~~~~~v~~~l~~~g~ 191 (211)
.+.+.|.+.+.+.+.+.| .++|||++.+...+. --|..+.+.++++|.. +-+.+.+++........|+
T Consensus 25 ~d~~~l~~~L~~ki~qaP~f~~aPvVldl~~l~~~~~---~dl~~L~~~l~~~gl~~vGv~g~~~~~~~~a~~~gL 97 (235)
T PRK04516 25 SDLFDLEDVLVKLGKKFQESGVVPFVLDVQEFDYPES---LDLAALVSLFSRHGMQILGLKHSNERWAAVAMKYHL 97 (235)
T ss_pred CCHHHHHHHHHHHHHhCcCCCCCcEEEEchhhCCccc---ccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHhhCCC
Confidence 567778888887776655 489999999864331 2266677778888864 4455666666555555554
No 64
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=62.04 E-value=45 Score=23.97 Aligned_cols=15 Identities=7% Similarity=0.162 Sum_probs=6.9
Q ss_pred HHHHHHhcCCcEEEE
Q psy2736 162 LCQNFSRRGQPLFFF 176 (211)
Q Consensus 162 ~~~~~~~~g~~l~l~ 176 (211)
+++.+++.|.++.++
T Consensus 33 ~l~~L~~~g~~l~i~ 47 (132)
T TIGR01662 33 ALAELKEAGYKVVIV 47 (132)
T ss_pred HHHHHHHCCCEEEEE
Confidence 444444444444444
No 65
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=61.95 E-value=21 Score=24.12 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=32.4
Q ss_pred HHHHHhcCCcEEEE-ecChhHHHHHhhcCCCCeE-EecChHHHHHHHh
Q psy2736 163 CQNFSRRGQPLFFF-NLKPSVVAVFEGVQPKDFV-VYYDSRELDHLLR 208 (211)
Q Consensus 163 ~~~~~~~g~~l~l~-~~~~~v~~~l~~~g~~~~~-i~~~~~ea~~~l~ 208 (211)
.+.+...|+.++++ ++.+...+.|+..|+..+. .-.+.+|+++.+.
T Consensus 46 ~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 46 AKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQGAGGDIEEALEAYL 93 (94)
T ss_dssp HHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEESTSSBHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEcCCCCHHHHHHHHh
Confidence 34445578887777 6789999999999965544 4556777776654
No 66
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=60.95 E-value=40 Score=29.07 Aligned_cols=86 Identities=12% Similarity=0.132 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHHHhhh---cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChh-HHHHH-hhcCCCCeE
Q psy2736 121 PSVDYVSNLVTKHSIK---QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPS-VVAVF-EGVQPKDFV 195 (211)
Q Consensus 121 ~n~~~~~~~l~~~~~~---~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~-v~~~l-~~~g~~~~~ 195 (211)
...+++++-....... ..+.|++| .....+|..+...|.+.+++.. .+..++++.-+++ +...+ .|+....|.
T Consensus 93 I~id~iR~l~~~~~~~p~~~~~kV~ii-Ep~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~~ll~ti~SRc~~~~~~ 170 (325)
T PRK08699 93 IKIDAVREIIDNVYLTSVRGGLRVILI-HPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAADKVLPTIKSRCRKMVLP 170 (325)
T ss_pred cCHHHHHHHHHHHhhCcccCCceEEEE-echhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChHhChHHHHHHhhhhcCC
Confidence 3577777655444322 23567777 8899999999999999999875 4566666655433 33222 222222222
Q ss_pred EecChHHHHHHHhh
Q psy2736 196 VYYDSRELDHLLRS 209 (211)
Q Consensus 196 i~~~~~ea~~~l~~ 209 (211)
. ++.+++.+.|++
T Consensus 171 ~-~~~~~~~~~L~~ 183 (325)
T PRK08699 171 A-PSHEEALAYLRE 183 (325)
T ss_pred C-CCHHHHHHHHHh
Confidence 2 356777777654
No 67
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=60.45 E-value=28 Score=29.85 Aligned_cols=56 Identities=20% Similarity=0.140 Sum_probs=43.6
Q ss_pred CCcEEEecCCCcccchHH----HHHHHHHHHHHHhcCCcEEEEe--cChhHHHHHhhcCCCC
Q psy2736 138 GIPVVVDCSHIYGADFTA----AKVIEVLCQNFSRRGQPLFFFN--LKPSVVAVFEGVQPKD 193 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~----l~~L~~~~~~~~~~g~~l~l~~--~~~~v~~~l~~~g~~~ 193 (211)
++.+++|+.+--.=|.-- -....+.+++++++|+.+.++. .++.+.+.|+..|+..
T Consensus 126 ~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~ 187 (301)
T TIGR01684 126 PHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDR 187 (301)
T ss_pred ceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCc
Confidence 478999998754444332 2577788999999999998885 6788999999999764
No 68
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=60.03 E-value=39 Score=31.26 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=58.7
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhhcCC---CCeEEecChHHHHHHHh
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQP---KDFVVYYDSRELDHLLR 208 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g~---~~~~i~~~~~ea~~~l~ 208 (211)
|+.||||=- =+.+|..|-.+|.+.+...+++|+.+++..-+|++....++.-. .....|...+|....+.
T Consensus 491 P~lvVLDEP-NsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 491 PFLVVLDEP-NSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred CcEEEecCC-CCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 577888854 57799999999999999999999999999999999888877762 23578888888887654
No 69
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=59.74 E-value=34 Score=24.71 Aligned_cols=71 Identities=13% Similarity=0.191 Sum_probs=43.8
Q ss_pred CcEEEecCCCcccchH-HHHHHHHHHHH----HHhcCCcEEEEecChhHHHHHhhcC-------CCCeEEecC-hHHHHH
Q psy2736 139 IPVVVDCSHIYGADFT-AAKVIEVLCQN----FSRRGQPLFFFNLKPSVVAVFEGVQ-------PKDFVVYYD-SRELDH 205 (211)
Q Consensus 139 ~~vIlD~s~v~~iD~t-~l~~L~~~~~~----~~~~g~~l~l~~~~~~v~~~l~~~g-------~~~~~i~~~-~~ea~~ 205 (211)
-.+|+|+++++.-..+ ....++.+.+. +-++=..++++|++..+...+.... ...+.++++ .+++.+
T Consensus 64 ~~~i~D~~~~~~~~~~~~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~L~~ 143 (157)
T cd00170 64 FVVIIDLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSDKEELLK 143 (157)
T ss_pred eEEEEECCCCChhccchhHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCCHHHHHh
Confidence 4689999998876442 33333333333 3444568999999876555554443 133567777 777777
Q ss_pred HHhh
Q psy2736 206 LLRS 209 (211)
Q Consensus 206 ~l~~ 209 (211)
++..
T Consensus 144 ~i~~ 147 (157)
T cd00170 144 YIDK 147 (157)
T ss_pred hCCh
Confidence 6543
No 70
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=59.66 E-value=44 Score=26.75 Aligned_cols=86 Identities=8% Similarity=-0.002 Sum_probs=52.3
Q ss_pred ecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecCh-h--HHHHHhhcCCCCeE
Q psy2736 119 IFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKP-S--VVAVFEGVQPKDFV 195 (211)
Q Consensus 119 ~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~-~--v~~~l~~~g~~~~~ 195 (211)
.|.+.+.+.+.+.+ ..+..+++|...+..-|..|++.+.++.+. ..+.++++....+ + +.+.+...|..+|-
T Consensus 22 ~~~~~~~~l~~~~~---~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~--~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl 96 (207)
T PRK11475 22 TFSSQSSFQDAMSR---ISFSAVIFSLSAMRSERREGLSCLTELAIK--FPRMRRLVIADDDIEARLIGSLSPSPLDGVL 96 (207)
T ss_pred EeCCHHHHHHHhcc---CCCCEEEeeccccCCCCCCHHHHHHHHHHH--CCCCCEEEEeCCCCHHHHHHHHHHcCCeEEE
Confidence 46677777665432 234678878877766666788888877653 2355655554322 2 44555567766653
Q ss_pred E-ecChHHHHHHHhh
Q psy2736 196 V-YYDSRELDHLLRS 209 (211)
Q Consensus 196 i-~~~~~ea~~~l~~ 209 (211)
. -.+.+|+.+++++
T Consensus 97 ~K~~~~~eL~~aI~~ 111 (207)
T PRK11475 97 SKASTLEILQQELFL 111 (207)
T ss_pred ecCCCHHHHHHHHHH
Confidence 3 3367777777664
No 71
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=58.60 E-value=55 Score=22.19 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=52.6
Q ss_pred ecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecC--hhHHHHHhhcCCCCeEE
Q psy2736 119 IFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLK--PSVVAVFEGVQPKDFVV 196 (211)
Q Consensus 119 ~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~g~~~~~i 196 (211)
.+.+.+.+.+.+.+. .+..+++|..- -|.++.+.+..+.+.. .+.++++..-+ +.......+.|..++-.
T Consensus 28 ~~~~~~~~~~~~~~~---~~d~iiid~~~---~~~~~~~~~~~i~~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~ 99 (112)
T PF00072_consen 28 TASSGEEALELLKKH---PPDLIIIDLEL---PDGDGLELLEQIRQIN--PSIPIIVVTDEDDSDEVQEALRAGADDYLS 99 (112)
T ss_dssp EESSHHHHHHHHHHS---TESEEEEESSS---SSSBHHHHHHHHHHHT--TTSEEEEEESSTSHHHHHHHHHTTESEEEE
T ss_pred EECCHHHHHHHhccc---CceEEEEEeee---cccccccccccccccc--ccccEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 566777777666543 35789999653 3356777787775544 66777766644 34555555777666655
Q ss_pred ec-ChHHHHHHHh
Q psy2736 197 YY-DSRELDHLLR 208 (211)
Q Consensus 197 ~~-~~~ea~~~l~ 208 (211)
-| +.+++.+.++
T Consensus 100 kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 100 KPFSPEELRAAIN 112 (112)
T ss_dssp SSSSHHHHHHHHH
T ss_pred CCCCHHHHHHhhC
Confidence 55 7777777664
No 72
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=58.05 E-value=23 Score=30.10 Aligned_cols=66 Identities=12% Similarity=0.204 Sum_probs=49.5
Q ss_pred ccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecC---hhHHHHHhhcCC
Q psy2736 121 PSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLK---PSVVAVFEGVQP 191 (211)
Q Consensus 121 ~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~---~~v~~~l~~~g~ 191 (211)
.+.+.+|+.+++.+.+..+.|-|-|.-.+.+| .|.++++...++++.+|+.==. +...++-+++++
T Consensus 130 ~~~p~IKE~vR~~I~~A~kVIAIVMD~FTD~d-----If~DLleAa~kR~VpVYiLLD~~~~~~Fl~Mc~~~~v 198 (284)
T PF07894_consen 130 DGQPHIKEVVRRMIQQAQKVIAIVMDVFTDVD-----IFCDLLEAANKRGVPVYILLDEQNLPHFLEMCEKLGV 198 (284)
T ss_pred CCCCCHHHHHHHHHHHhcceeEEEeeccccHH-----HHHHHHHHHHhcCCcEEEEechhcChHHHHHHHHCCC
Confidence 67888999999999887666667676666555 5999999999999999987433 445555566653
No 73
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=56.37 E-value=21 Score=29.08 Aligned_cols=69 Identities=10% Similarity=0.140 Sum_probs=42.5
Q ss_pred EEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEe-----cChhHHHHHhh-cCCC--CeEEecChHHHHHHHhh
Q psy2736 141 VVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFN-----LKPSVVAVFEG-VQPK--DFVVYYDSRELDHLLRS 209 (211)
Q Consensus 141 vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~-----~~~~v~~~l~~-~g~~--~~~i~~~~~ea~~~l~~ 209 (211)
+++|+.++-+-.......=.+.++.++++|.++.|.. ..++..+.|.. .|+. .-.++.+...+.++|++
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~ 77 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQ 77 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHH
Confidence 3567766655444433333466667788888887773 23455566766 5632 22577777777777765
No 74
>PF05209 MinC_N: Septum formation inhibitor MinC, N-terminal domain; InterPro: IPR007874 In Escherichia coli FtsZ (P0A9A6 from SWISSPROT) assembles into a Z ring at midcell. Its assembly at polar sites is prevented by the min system. MinC P18196 from SWISSPROT, a component of this system, is an inhibitor of FtsZ assembly that is positioned within the cell by interaction with the MinDE proteins. MinC is an oligomer, probably a dimer []. The C-terminal half of MinC is the most conserved and interacts with MinD. The N-terminal half is thought to interact with FtsZ. MinC rapidly oscillates between the poles of the cell to destabilise FtsZ filaments that have formed before they mature into polar Z rings; GO: 0051302 regulation of cell division; PDB: 3GHF_A 1HF2_C.
Probab=56.01 E-value=25 Score=24.61 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=33.1
Q ss_pred ecccHHHHHHHHHHHhhhcC-----CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCc
Q psy2736 119 IFPSVDYVSNLVTKHSIKQG-----IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQP 172 (211)
Q Consensus 119 ~F~n~~~~~~~l~~~~~~~~-----~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~ 172 (211)
...+.+.+.+.+.+.+++.| .++|||++.. .|..- +..+...+++.|..
T Consensus 21 ~~~d~~~l~~~L~~ki~~ap~FF~~~pvvldl~~l--~~~~d---l~~L~~~l~~~gl~ 74 (99)
T PF05209_consen 21 RSADLDELLQALDEKIAQAPDFFKNAPVVLDLSNL--PDELD---LAALVELLRRHGLR 74 (99)
T ss_dssp CSS-HHHHHHHHHHHHHHTHHHCTTTEEEEEEEEE--ETTHH---HHHHHHHHHCCCHC
T ss_pred CCCCHHHHHHHHHHHHHhChHhHcCCCeEEehhhc--CChhh---HHHHHHHHHHcCCE
Confidence 34577888888888887653 6899999988 44443 44555556666644
No 75
>PRK11778 putative inner membrane peptidase; Provisional
Probab=55.99 E-value=73 Score=27.70 Aligned_cols=69 Identities=14% Similarity=0.080 Sum_probs=45.2
Q ss_pred CceEEEEccCcceecccHHHHHHHHHHHhhh--cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEE
Q psy2736 106 GIEYLLLTPDRCLIFPSVDYVSNLVTKHSIK--QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFF 175 (211)
Q Consensus 106 ~~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~--~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l 175 (211)
.+.+.|+.++|.+.-.....+++.+...... +.+.|+|+...--.. ..+.+.....++++++.+.+++.
T Consensus 89 ~~~v~VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~-v~~s~~a~~~l~~lr~~~kpVva 159 (330)
T PRK11778 89 KPRLFVLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGV-VHGYGLAASQLQRLRDAGIPLTV 159 (330)
T ss_pred CCeEEEEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCc-hhHHHHHHHHHHHHHhcCCCEEE
Confidence 3579999999999988888888888776532 225688888643331 11222233335667777777665
No 76
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=54.46 E-value=71 Score=26.18 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=43.7
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhhcC
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQ 190 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g 190 (211)
.|+.+.|| .....+|.-++.-++.+++.++.+|+-+.++ ..+|++.|..++
T Consensus 157 ~P~fiLLD-EPFAGVDPiaV~dIq~iI~~L~~rgiGvLIT--DHNVREtL~i~d 207 (243)
T COG1137 157 NPKFILLD-EPFAGVDPIAVIDIQRIIKHLKDRGIGVLIT--DHNVRETLDICD 207 (243)
T ss_pred CCCEEEec-CCccCCCchhHHHHHHHHHHHHhCCceEEEc--cccHHHHHhhhh
Confidence 36788888 4588899999999999999999999999998 456788888877
No 77
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=54.21 E-value=38 Score=25.01 Aligned_cols=53 Identities=11% Similarity=0.262 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHH-----hcCC-cEEEEecC---hhHHHHHhh---cC-C-----CCeEEecChHHHHHHH
Q psy2736 155 AAKVIEVLCQNFS-----RRGQ-PLFFFNLK---PSVVAVFEG---VQ-P-----KDFVVYYDSRELDHLL 207 (211)
Q Consensus 155 ~l~~L~~~~~~~~-----~~g~-~l~l~~~~---~~v~~~l~~---~g-~-----~~~~i~~~~~ea~~~l 207 (211)
|.++|.++...+. .... ++++.|.+ +++.+.+++ .+ . ..+.+.+|.+|+.+++
T Consensus 63 G~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 63 GIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 7888888877664 3344 89999976 666666643 23 1 2368999999999875
No 78
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=53.73 E-value=54 Score=26.41 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHhhhc-CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCc
Q psy2736 122 SVDYVSNLVTKHSIKQ-GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQP 172 (211)
Q Consensus 122 n~~~~~~~l~~~~~~~-~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~ 172 (211)
+.+.+.+.++++.+++ .+.|+|+.+.-.+ ..+.++.|.+.++++++.+.+
T Consensus 30 ~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~~~i~~~~~~~kp 80 (222)
T cd07018 30 SLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELRQALERFRASGKP 80 (222)
T ss_pred cHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHHHHHHHHHHhCCe
Confidence 3344444554443322 1455555555444 555555555555555544443
No 79
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=53.47 E-value=92 Score=23.21 Aligned_cols=67 Identities=13% Similarity=-0.024 Sum_probs=42.9
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhc---CCcEEEEecC-------hhHHHHHhhcCCCCeEEec---ChHHH
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRR---GQPLFFFNLK-------PSVVAVFEGVQPKDFVVYY---DSREL 203 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~---g~~l~l~~~~-------~~v~~~l~~~g~~~~~i~~---~~~ea 203 (211)
.++.|.+.+. ..+....+.++.+.+++. +..+++-|.- +...+.+++.|. -.+|+ +.++.
T Consensus 54 ~~d~V~lS~~-----~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~--~~vf~~~~~~~~i 126 (137)
T PRK02261 54 DADAILVSSL-----YGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGF--DRVFPPGTDPEEA 126 (137)
T ss_pred CCCEEEEcCc-----cccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCC--CEEECcCCCHHHH
Confidence 3455555433 234555566666767666 5667777753 567788999882 25676 78888
Q ss_pred HHHHhhh
Q psy2736 204 DHLLRSK 210 (211)
Q Consensus 204 ~~~l~~~ 210 (211)
..+|++.
T Consensus 127 ~~~l~~~ 133 (137)
T PRK02261 127 IDDLKKD 133 (137)
T ss_pred HHHHHHH
Confidence 8887753
No 80
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=53.37 E-value=73 Score=26.90 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=32.9
Q ss_pred CcEEEecCC-CcccchH-HHHHHHHHHHHHHhcCCcEEEEe--------------cChhHHHHHhhcCC-CCeEEecChH
Q psy2736 139 IPVVVDCSH-IYGADFT-AAKVIEVLCQNFSRRGQPLFFFN--------------LKPSVVAVFEGVQP-KDFVVYYDSR 201 (211)
Q Consensus 139 ~~vIlD~s~-v~~iD~t-~l~~L~~~~~~~~~~g~~l~l~~--------------~~~~v~~~l~~~g~-~~~~i~~~~~ 201 (211)
..+|+...+ |-.|.+. -++++.++..+..+.|.-++=+. +.++-.+.|+..|+ +|+-++.+..
T Consensus 135 Dv~iiEiGGTVGDIEs~pFlEAirQl~~~~G~~n~~~IHvtlVP~l~~~gE~KTKPtQhSVk~Lr~~GI~PDilvcRs~~ 214 (276)
T PF06418_consen 135 DVVIIEIGGTVGDIESLPFLEAIRQLRNEVGRENVCFIHVTLVPYLKAAGEQKTKPTQHSVKELRSIGIQPDILVCRSER 214 (276)
T ss_dssp SEEEEEEESETTSCCCHHHHHHHHHHHHHH-TTCEEEEEEEE--EETTTTEE-HHHHHHHHHHHHHTT---SEEEEEESS
T ss_pred CEEEEecCCcccccccccHHHHHHHHHHHhCcCcEEEEEEeeeeeeCCCCccCCccHHHHHHHHHhCCCCCCEEEEcCCC
Confidence 556665544 4444333 45555555555544442211111 11234555666664 5666666666
Q ss_pred HHHHHHhhh
Q psy2736 202 ELDHLLRSK 210 (211)
Q Consensus 202 ea~~~l~~~ 210 (211)
++.+..++|
T Consensus 215 ~l~~~~k~K 223 (276)
T PF06418_consen 215 PLDEEIKEK 223 (276)
T ss_dssp ---HHHHHH
T ss_pred CCCHHHHHH
Confidence 666666655
No 81
>KOG0237|consensus
Probab=53.15 E-value=52 Score=31.01 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=23.9
Q ss_pred EecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChh
Q psy2736 143 VDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPS 181 (211)
Q Consensus 143 lD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~ 181 (211)
-|++.+..+|.+ ..-+..+.+.+++.++.+++.++..+
T Consensus 42 ~~~~~~~~~dI~-~~d~~ala~f~~e~~I~lVvvGPE~P 79 (788)
T KOG0237|consen 42 GDASKVPNLDIS-VADFEALASFCKEHNINLVVVGPELP 79 (788)
T ss_pred CccccCcccccC-hhhHHHHHHHHHHcceeEEEECCchh
Confidence 466666666665 44455566666667777777766443
No 82
>PF00606 Glycoprotein_B: Herpesvirus Glycoprotein B; InterPro: IPR000234 This family of proteins are the surface glycoprotein of various herpesviruses. The glycoprotein is anchored to the lipid envelope of the virus by a transmembrane region.; GO: 0016020 membrane; PDB: 3FVC_A 2GUM_B 3NWF_B 3NW8_C 3NWA_B 3NWD_D.
Probab=52.42 E-value=5.1 Score=38.15 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred chHHHHHhHhHHHhhhcCCcccccchhhhHHhhhcCCCccchhhhhhc------ccchhHHHHHHHH
Q psy2736 8 TQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTAH------GKSVDATQEILAV 68 (211)
Q Consensus 8 nqEl~a~G~~N~~~~~~g~~p~~~s~srs~~n~~~G~~t~~s~~~~~~------P~~~La~ili~~~ 68 (211)
|+.=+-.|+++++.+| |...+...|.-+|+-+-++++++|+ |...++-++++++
T Consensus 620 ~~~~~~~gl~~~~~~L-------G~~Gk~vg~vv~~v~g~~~s~VsG~~sF~~NPfGg~~i~llv~~ 679 (713)
T PF00606_consen 620 NRPAFIRGLDDFMQGL-------GAVGKAVGNVVSGVGGAFGSIVSGFISFLKNPFGGLLIILLVIA 679 (713)
T ss_dssp -------------------------------------------------------------------
T ss_pred CchhHHHHHHHHHHhh-------hhhchhhhhhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 4555555666555443 6788899999999999999999998 8887776666655
No 83
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=52.13 E-value=47 Score=24.83 Aligned_cols=52 Identities=12% Similarity=-0.070 Sum_probs=30.1
Q ss_pred EEEEccCcceec--ccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHH
Q psy2736 109 YLLLTPDRCLIF--PSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEV 161 (211)
Q Consensus 109 i~v~~~~g~L~F--~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~ 161 (211)
+.+++++.- .. ...+.+++.+.++.++..+.+|||++.-..=+......|..
T Consensus 2 i~yl~i~sf-~~~~~~~~~~~~~~~~~~~~~~~~lIIDlR~N~GG~~~~~~~l~~ 55 (169)
T PF03572_consen 2 IGYLRIPSF-SENKSFDEELDEFLDKLKSKDTDGLIIDLRGNGGGSDEYAIELLS 55 (169)
T ss_dssp EEEEEES-B-CCGHHHHHHHHHHHHHHHHTTSSEEEEE-TTB--BSHHHHHHHHH
T ss_pred EEEEEeCcc-cCccccHHHHHHHHHHHHHCCCCEEEEEcccCCCcchHHHHHHHh
Confidence 455666642 11 34566666666665445689999999988877765554433
No 84
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=51.97 E-value=39 Score=26.49 Aligned_cols=60 Identities=10% Similarity=0.193 Sum_probs=39.2
Q ss_pred EEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcE
Q psy2736 110 LLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPL 173 (211)
Q Consensus 110 ~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l 173 (211)
.+++++|.+...+...+.+.+.++.+++.+.|+|+.+.--. +..+.. ++++.+.....++
T Consensus 2 ~vv~i~g~I~~~~~~~l~~~l~~a~~~~~~~vvl~InSpGG-~v~~~~---~i~~~l~~~~kPv 61 (187)
T cd07020 2 YVLEINGAITPATADYLERAIDQAEEGGADALIIELDTPGG-LLDSTR---EIVQAILASPVPV 61 (187)
T ss_pred EEEEEeeEEChHHHHHHHHHHHHHHhCCCCEEEEEEECCCC-CHHHHH---HHHHHHHhCCCCE
Confidence 57899999999999999999988865434678887664333 333333 3333444444544
No 85
>PRK10949 protease 4; Provisional
Probab=50.71 E-value=1.1e+02 Score=29.02 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=53.3
Q ss_pred CceEEEEccCcceec-------ccHHHHHHHHHHHhhhcC-CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEE
Q psy2736 106 GIEYLLLTPDRCLIF-------PSVDYVSNLVTKHSIKQG-IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFF 175 (211)
Q Consensus 106 ~~~i~v~~~~g~L~F-------~n~~~~~~~l~~~~~~~~-~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l 175 (211)
.+.+.|+.++|.+.- .+.+.+.+.++++.+++. +.|||+.. -+.-..++.+.+.+.++++++.|.+++.
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrIn-SpGGs~~ase~i~~~i~~~r~~gKPVva 401 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVN-SPGGSVTASEVIRAELAAARAAGKPVVV 401 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEec-CCCCcHHHHHHHHHHHHHHHhcCCcEEE
Confidence 457899999999864 345678888888765543 78999887 4456778888999989999888887764
No 86
>PLN03211 ABC transporter G-25; Provisional
Probab=50.67 E-value=1.3e+02 Score=28.61 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=51.7
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecCh--hHHHHHhhcCC---CCeEEecChHHHHHHHhh
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKP--SVVAVFEGVQP---KDFVVYYDSRELDHLLRS 209 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~g~---~~~~i~~~~~ea~~~l~~ 209 (211)
|+.+++| +..+.+|+.....+.++++++.++|.+++++--++ ++.+.+++.-. ....-+.+.+++.+++++
T Consensus 225 P~iLlLD-EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~ 300 (659)
T PLN03211 225 PSLLILD-EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFES 300 (659)
T ss_pred CCEEEEe-CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHH
Confidence 4666777 55889999999999999999988888877775554 35666666541 224455678888888764
No 87
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=48.29 E-value=53 Score=28.19 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=40.8
Q ss_pred CCcEEEecCCCcccchHH----HHHHHHHHHHHHhcCCcEEEE--ecChhHHHHHhhcCCCC
Q psy2736 138 GIPVVVDCSHIYGADFTA----AKVIEVLCQNFSRRGQPLFFF--NLKPSVVAVFEGVQPKD 193 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~----l~~L~~~~~~~~~~g~~l~l~--~~~~~v~~~l~~~g~~~ 193 (211)
++.+++|+.+--.=+-.- -....+.+++++++|..+.++ +.++.+.+.|+..|+..
T Consensus 128 ~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~ 189 (303)
T PHA03398 128 PHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEG 189 (303)
T ss_pred ccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCc
Confidence 467889987633322221 245667788889999999888 46789999999999754
No 88
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=48.17 E-value=2.1e+02 Score=25.80 Aligned_cols=90 Identities=10% Similarity=0.011 Sum_probs=47.9
Q ss_pred Ccceec---ccHHHHHHHHHHHhhhcC-CcEEEecCCCcccchHHHHHHHHHHHHHHhc-CCcEEEEecC----hhHHHH
Q psy2736 115 DRCLIF---PSVDYVSNLVTKHSIKQG-IPVVVDCSHIYGADFTAAKVIEVLCQNFSRR-GQPLFFFNLK----PSVVAV 185 (211)
Q Consensus 115 ~g~L~F---~n~~~~~~~l~~~~~~~~-~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~-g~~l~l~~~~----~~v~~~ 185 (211)
..|++. .+-+.+.+.++.+.+++. ..+++-+..-..-|. ......+.+..++. +++++.+-.. ++.++.
T Consensus 344 ~NPlDl~~~~~~~~~~~al~~l~~dp~vd~Vlv~~~~~~~~~~--~~~a~~l~~~~~~~~~KPvv~~~~gg~~~~~~~~~ 421 (447)
T TIGR02717 344 KNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLTPTAMTDP--EEVAKGIIEGAKKSNEKPVVAGFMGGKSVDPAKRI 421 (447)
T ss_pred CCCEecCCCCCHHHHHHHHHHHHcCCCCCEEEEEccCCccCCH--HHHHHHHHHHHHhcCCCcEEEEecCCccHHHHHHH
Confidence 445555 445677777766665432 444433331111122 12223333333443 6777554432 335555
Q ss_pred HhhcCCCCeEEecChHHHHHHHhh
Q psy2736 186 FEGVQPKDFVVYYDSRELDHLLRS 209 (211)
Q Consensus 186 l~~~g~~~~~i~~~~~ea~~~l~~ 209 (211)
|+..| +.+|++.+++.+++..
T Consensus 422 L~~~G---ip~f~~p~~A~~al~~ 442 (447)
T TIGR02717 422 LEENG---IPNYTFPERAVKALSA 442 (447)
T ss_pred HHhCC---CCccCCHHHHHHHHHH
Confidence 66555 6789999999998763
No 89
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=48.07 E-value=72 Score=23.86 Aligned_cols=57 Identities=14% Similarity=0.043 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHhcCC--cEEEEecC-----hh---HHHHHhhcCCCCeEEec---ChHHHHHHHhhhC
Q psy2736 153 FTAAKVIEVLCQNFSRRGQ--PLFFFNLK-----PS---VVAVFEGVQPKDFVVYY---DSRELDHLLRSKM 211 (211)
Q Consensus 153 ~t~l~~L~~~~~~~~~~g~--~l~l~~~~-----~~---v~~~l~~~g~~~~~i~~---~~~ea~~~l~~~~ 211 (211)
.+.+..+.++.+.++++|. ..+++|=. ++ +.+.|++.|. =.+|+ ..++..+++++.|
T Consensus 63 ~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv--~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 63 GHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGF--DRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred ccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCC--CEEECcCCCHHHHHHHHHHHh
Confidence 5677778888888888864 34445432 22 3456888882 24666 8999999998865
No 90
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=47.83 E-value=79 Score=29.69 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHhhhcC-CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEE
Q psy2736 122 SVDYVSNLVTKHSIKQG-IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFF 176 (211)
Q Consensus 122 n~~~~~~~l~~~~~~~~-~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~ 176 (211)
+...+.+.++++.+++. +-|+||.+....-+.+.++-|.+.++++++.|++++-.
T Consensus 77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~ 132 (584)
T TIGR00705 77 SLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAY 132 (584)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 44567777777655432 68999999877778888888999999998888776543
No 91
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=47.61 E-value=1.3e+02 Score=23.68 Aligned_cols=83 Identities=6% Similarity=0.038 Sum_probs=58.0
Q ss_pred EEEccCcceecccHHHHHHHHHHHhhh----------------------cCCcEEEecCCCcccch--HHHHHHHHHHHH
Q psy2736 110 LLLTPDRCLIFPSVDYVSNLVTKHSIK----------------------QGIPVVVDCSHIYGADF--TAAKVIEVLCQN 165 (211)
Q Consensus 110 ~v~~~~g~L~F~n~~~~~~~l~~~~~~----------------------~~~~vIlD~s~v~~iD~--t~l~~L~~~~~~ 165 (211)
.++.+...-...+...+.+.+.++-+. .+..|-+|.+-+..++. .....+..+.+.
T Consensus 118 l~iei~e~~~~~~~~~~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~ 197 (240)
T cd01948 118 LVLEITESALIDDLEEALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIAL 197 (240)
T ss_pred EEEEEecchhhCCHHHHHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHH
Confidence 466666665555555555444443221 14678888887777654 567788888888
Q ss_pred HHhcCCcEEEEec-ChhHHHHHhhcCCC
Q psy2736 166 FSRRGQPLFFFNL-KPSVVAVFEGVQPK 192 (211)
Q Consensus 166 ~~~~g~~l~l~~~-~~~v~~~l~~~g~~ 192 (211)
.+..|.+++..++ +++-.+.++..|..
T Consensus 198 ~~~~~~~via~gVe~~~~~~~~~~~gi~ 225 (240)
T cd01948 198 AHSLGLKVVAEGVETEEQLELLRELGCD 225 (240)
T ss_pred HHHCCCeEEEEecCCHHHHHHHHHcCCC
Confidence 8999999999998 46778888888854
No 92
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=47.58 E-value=1.6e+02 Score=24.43 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhhcCCCCe-------EE
Q psy2736 124 DYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDF-------VV 196 (211)
Q Consensus 124 ~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g~~~~-------~i 196 (211)
++=+..+.++.--.|+.+|||=. =+.+|..+++.+.+.++.+++.|..+.+.--.+++.+ ....+.. .+
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~-DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~---~i~pD~vhvl~~GrIv 224 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEP-DSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLD---YIKPDKVHVLYDGRIV 224 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCC-CcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHh---hcCCCEEEEEECCEEE
Confidence 33344444433334788999965 5789999999999999999999988777755555444 4443222 23
Q ss_pred ecChHHHHHHHhh
Q psy2736 197 YYDSRELDHLLRS 209 (211)
Q Consensus 197 ~~~~~ea~~~l~~ 209 (211)
..--.|+.+.+++
T Consensus 225 ~sG~~el~~~le~ 237 (251)
T COG0396 225 KSGDPELAEELEE 237 (251)
T ss_pred ecCCHHHHHHHHH
Confidence 3333466666654
No 93
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=46.07 E-value=74 Score=26.16 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCcEEEEecC------hhHHHHHhhcCCCC
Q psy2736 159 IEVLCQNFSRRGQPLFFFNLK------PSVVAVFEGVQPKD 193 (211)
Q Consensus 159 L~~~~~~~~~~g~~l~l~~~~------~~v~~~l~~~g~~~ 193 (211)
..++++.++++|.++.++.=+ .....+++..|+..
T Consensus 119 a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~ 159 (237)
T TIGR01672 119 ARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPA 159 (237)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCch
Confidence 667888899999998887432 35666677788643
No 94
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=45.62 E-value=53 Score=25.68 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=40.6
Q ss_pred EEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEE
Q psy2736 110 LLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLF 174 (211)
Q Consensus 110 ~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~ 174 (211)
.+++++|.+.-...+++++.+.+..+++.+.|+|+.+.--..- ++...+ ++.++....+++
T Consensus 2 ~vi~i~G~I~~~~~~~l~~~l~~A~~~~~~~i~l~inSPGG~v-~~~~~I---~~~i~~~~~pvv 62 (172)
T cd07015 2 YVAQIKGQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRA-DAAGNI---VQRIQQSKIPVI 62 (172)
T ss_pred EEEEEeeEECHhHHHHHHHHHHHHhcCCCCeEEEEEECCCCCH-HHHHHH---HHHHHhcCcCEE
Confidence 5788999999999999999999876554477888887544433 333333 444444444443
No 95
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=45.35 E-value=1.7e+02 Score=27.46 Aligned_cols=71 Identities=10% Similarity=0.141 Sum_probs=50.7
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecCh--hHHHHHhhcCC---CCeEEecChHHHHHHHhh
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKP--SVVAVFEGVQP---KDFVVYYDSRELDHLLRS 209 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~g~---~~~~i~~~~~ea~~~l~~ 209 (211)
|+.+++| +..+.+|+.....+.+.++++.++|.+++++--++ ++.+.+++.-. ....-+.+.+|+.+++++
T Consensus 185 p~vlllD-EPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~ 260 (617)
T TIGR00955 185 PPLLFCD-EPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSD 260 (617)
T ss_pred CCEEEee-CCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHH
Confidence 5666777 45888999999999999999988887777665543 46777777652 223455677777777654
No 96
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=45.28 E-value=69 Score=21.77 Aligned_cols=46 Identities=13% Similarity=0.040 Sum_probs=32.5
Q ss_pred HHHHHHhcCCcEEEE-ecChhHHHHHhhcCCCCeEEec--ChHHHHHHH
Q psy2736 162 LCQNFSRRGQPLFFF-NLKPSVVAVFEGVQPKDFVVYY--DSRELDHLL 207 (211)
Q Consensus 162 ~~~~~~~~g~~l~l~-~~~~~v~~~l~~~g~~~~~i~~--~~~ea~~~l 207 (211)
..+.+...|+.++++ ++.+...+.|+..|+..+..-+ +.+|+++.+
T Consensus 53 ~~~~l~~~~v~~vi~~~iG~~a~~~l~~~gI~v~~~~~~~~v~eal~~~ 101 (102)
T cd00562 53 AARLLALEGCDAVLVGGIGGPAAAKLEAAGIKPIKAAEGGTIEEALEAL 101 (102)
T ss_pred HHHHHHHCCCcEEEEcccCccHHHHHHHcCCEEEEcCCCCcHHHHHHhh
Confidence 445556688888887 6788899999999966555443 666666543
No 97
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=45.20 E-value=76 Score=27.84 Aligned_cols=89 Identities=10% Similarity=-0.011 Sum_probs=47.4
Q ss_pred eecccHHH-----HHHHHHHHhhhcC-CcEEEecCC----CcccchHHHHHHHHHHHHHHhcCCcEEEEecCh----hHH
Q psy2736 118 LIFPSVDY-----VSNLVTKHSIKQG-IPVVVDCSH----IYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKP----SVV 183 (211)
Q Consensus 118 L~F~n~~~-----~~~~l~~~~~~~~-~~vIlD~s~----v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~----~v~ 183 (211)
|+|+.... +++.+.++.++.. ..+.+-+|+ ..|+..-..+....+.+.+.+.+..+++||... .+.
T Consensus 267 L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~ 346 (382)
T cd06207 267 LYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQPKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQ 346 (382)
T ss_pred EEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCCCCceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHH
Confidence 66665433 6777777654432 235555543 223332222222333344444445899998765 677
Q ss_pred HHHhhcCCCCeEEecChHHHHHHHh
Q psy2736 184 AVFEGVQPKDFVVYYDSRELDHLLR 208 (211)
Q Consensus 184 ~~l~~~g~~~~~i~~~~~ea~~~l~ 208 (211)
+.|...+... ---+.+||.++++
T Consensus 347 ~~L~~~~~~~--~~~~~~~a~~~~~ 369 (382)
T cd06207 347 EAFEEILKKH--GGGDEELAEKKIE 369 (382)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHH
Confidence 7777665321 1235677777764
No 98
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=45.18 E-value=1.4e+02 Score=24.61 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=38.9
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEec-ChhHHHHHhhc
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNL-KPSVVAVFEGV 189 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~-~~~v~~~l~~~ 189 (211)
|+.+|+| ...+.+|.+....+.++++++++.|..++|+.- -+++..+.++.
T Consensus 152 P~i~vlD-EP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrv 203 (245)
T COG4555 152 PSILVLD-EPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRV 203 (245)
T ss_pred CCeEEEc-CCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheE
Confidence 5677777 458999999999999999999999988888732 34444444433
No 99
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=44.94 E-value=1.3e+02 Score=22.36 Aligned_cols=68 Identities=7% Similarity=0.078 Sum_probs=43.2
Q ss_pred cEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecC----hhHHHHHhhcCCCCeEEecChHHHHHHH
Q psy2736 140 PVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLK----PSVVAVFEGVQPKDFVVYYDSRELDHLL 207 (211)
Q Consensus 140 ~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~g~~~~~i~~~~~ea~~~l 207 (211)
.+||=-.+-+.-+....+.+.+..+.+++.+++++..++. ....+.+...+...+...++.+|+.+++
T Consensus 99 ~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~~~~~~~l~~ia~~~~g~~~~~~~~~~~~~~~ 170 (170)
T cd01465 99 RILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGDNYNEDLMEAIADAGNGNTAYIDNLAEARKVF 170 (170)
T ss_pred EEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCCCcCHHHHHHHHhcCCceEEEeCCHHHHHhhC
Confidence 3444334433333334566777777788899999988884 3455555555555566778888887653
No 100
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=43.75 E-value=76 Score=25.58 Aligned_cols=51 Identities=12% Similarity=0.026 Sum_probs=28.4
Q ss_pred EEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecC--hhHHHHHhhcCC
Q psy2736 141 VVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLK--PSVVAVFEGVQP 191 (211)
Q Consensus 141 vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~g~ 191 (211)
+++|+.+.-.-+..-...-.+.++++++.|++++++.-+ ..+...++..|+
T Consensus 2 i~~DlDGTLl~~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 2 IFTDLDGTLLPPGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGV 54 (225)
T ss_pred EEEeCCCCCcCCCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 455655432222122223456667777888888888554 345566666664
No 101
>PTZ00445 p36-lilke protein; Provisional
Probab=43.74 E-value=73 Score=25.99 Aligned_cols=61 Identities=8% Similarity=0.013 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHhhhcC-CcEEEecCC--Cc-----ccchH---------HHHHHHHHHHHHHhcCCcEEEEecChhH
Q psy2736 122 SVDYVSNLVTKHSIKQG-IPVVVDCSH--IY-----GADFT---------AAKVIEVLCQNFSRRGQPLFFFNLKPSV 182 (211)
Q Consensus 122 n~~~~~~~l~~~~~~~~-~~vIlD~s~--v~-----~iD~t---------~l~~L~~~~~~~~~~g~~l~l~~~~~~v 182 (211)
|..+-.+.+.+.+.+.+ +.|+.|+.. +. +.|-. +-..+..+.+++++.|+++.++--++++
T Consensus 26 ~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~ 103 (219)
T PTZ00445 26 NPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKE 103 (219)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchh
Confidence 33333444444444433 788888864 55 56655 6667999999999999999999888774
No 102
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=43.68 E-value=1.5e+02 Score=23.32 Aligned_cols=56 Identities=11% Similarity=0.035 Sum_probs=43.8
Q ss_pred CCcEEEecCC--CcccchHHHHHHHHHHHHHHhcCCcEEEEecC--hhHHHHHhhcCCCC
Q psy2736 138 GIPVVVDCSH--IYGADFTAAKVIEVLCQNFSRRGQPLFFFNLK--PSVVAVFEGVQPKD 193 (211)
Q Consensus 138 ~~~vIlD~s~--v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~g~~~ 193 (211)
-+.+++|+.+ |.+=+..+..-+.+...++++.|+++++++=+ ..+....++.|.+.
T Consensus 28 ikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~f 87 (175)
T COG2179 28 IKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPF 87 (175)
T ss_pred CcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCce
Confidence 3789999976 66667778899999999999999998777443 45666677777544
No 103
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=43.49 E-value=70 Score=26.07 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCcEEEEecC--hhHHHHHhhcCC
Q psy2736 159 IEVLCQNFSRRGQPLFFFNLK--PSVVAVFEGVQP 191 (211)
Q Consensus 159 L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~g~ 191 (211)
-.+.++++++.|+++.++.=+ ..+...++..+.
T Consensus 21 ~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~ 55 (256)
T TIGR01486 21 AKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGL 55 (256)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 355666677778888887443 345566666664
No 104
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=43.27 E-value=73 Score=22.95 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=33.8
Q ss_pred cCCcEEEE-ecChhHHHHHhhcCCCCeEEec--ChHHHHHHHhhhC
Q psy2736 169 RGQPLFFF-NLKPSVVAVFEGVQPKDFVVYY--DSRELDHLLRSKM 211 (211)
Q Consensus 169 ~g~~l~l~-~~~~~v~~~l~~~g~~~~~i~~--~~~ea~~~l~~~~ 211 (211)
.|.+++|+ ++-+...+.|+..|+..+.... +.+|+++.|++.|
T Consensus 62 ~~c~vvi~~~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~ 107 (119)
T TIGR02663 62 KDCAILYCLAIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKML 107 (119)
T ss_pred CCCcEEEEhhcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHH
Confidence 58888888 6788999999999976664333 6899998887765
No 105
>PRK00030 minC septum formation inhibitor; Provisional
Probab=43.24 E-value=1.8e+02 Score=24.86 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=41.6
Q ss_pred cccHHHHHHHHHHHhhhcC-----CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEE-EEecChhHHHHHhhcCC
Q psy2736 120 FPSVDYVSNLVTKHSIKQG-----IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLF-FFNLKPSVVAVFEGVQP 191 (211)
Q Consensus 120 F~n~~~~~~~l~~~~~~~~-----~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~-l~~~~~~v~~~l~~~g~ 191 (211)
-...+.|++.|.+.+.+.| .+||||++.+.. . --|..+.+.+++.|...+ +.+-++. ++.-...|+
T Consensus 24 ~~d~~~l~~~L~~ki~~aP~FF~~~PvViDl~~l~~--~---~d~~~L~~~l~~~gl~pVGV~g~~~~-~~~a~~~gL 95 (292)
T PRK00030 24 DADTTRLRAALDKRMADAGSFFENEPVVIDATRVDA--P---VDWPALLQALADHNLPPIGVVAEGAN-LQGARDAGL 95 (292)
T ss_pred CCCHHHHHHHHHHHHhhChHhhcCCCEEEEChhcCC--c---cCHHHHHHHHHHCCCEEEEEeCCcHH-HHHHHHcCC
Confidence 3567788888888776653 689999999862 1 226667777778785433 4443333 334334453
No 106
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=42.82 E-value=1.7e+02 Score=27.59 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=49.6
Q ss_pred CceEEEEccCcceecc-------cHHHHHHHHHHHhhhcC-CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEE
Q psy2736 106 GIEYLLLTPDRCLIFP-------SVDYVSNLVTKHSIKQG-IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFF 175 (211)
Q Consensus 106 ~~~i~v~~~~g~L~F~-------n~~~~~~~l~~~~~~~~-~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l 175 (211)
.+.+.++.++|++.-. ..+.+.+.+++..+++. +.|||....- .-+..+.+.+.+.++++++.|.+++.
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSp-GGs~~ase~i~~~i~~~~~~gKPVva 383 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSP-GGSVFASEIIRRELARAQARGKPVIV 383 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCC-CCCHHHHHHHHHHHHHHHhCCCcEEE
Confidence 4578999999998732 35677788877765432 6888887643 34667778888888888888777654
No 107
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=41.90 E-value=1.4e+02 Score=21.93 Aligned_cols=70 Identities=11% Similarity=0.168 Sum_probs=41.3
Q ss_pred CcEEEecCCCcccchHHHHHHHHHHH----HHHhcCCcEEEEecChhHHHHHhhcC---------CCCeEEecChHHHHH
Q psy2736 139 IPVVVDCSHIYGADFTAAKVIEVLCQ----NFSRRGQPLFFFNLKPSVVAVFEGVQ---------PKDFVVYYDSRELDH 205 (211)
Q Consensus 139 ~~vIlD~s~v~~iD~t~l~~L~~~~~----~~~~~g~~l~l~~~~~~v~~~l~~~g---------~~~~~i~~~~~ea~~ 205 (211)
=.||+|+++.+.-+......+.++++ .+.++=..+++.+++.-.+..++... ...+...++.+|+.+
T Consensus 50 f~vVid~~~~~~~~~~~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~sl~~L~~ 129 (149)
T PF13716_consen 50 FSVVIDHTGFSRSSEPSLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSSLSELSK 129 (149)
T ss_dssp EEEEEE-TT--GGG---HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESSTCGGGG
T ss_pred EEEEEEcCCCccccCCchHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECCHHHHHh
Confidence 36999999987655555666666544 34445567999999988888883432 123467888888876
Q ss_pred HHh
Q psy2736 206 LLR 208 (211)
Q Consensus 206 ~l~ 208 (211)
++.
T Consensus 130 ~i~ 132 (149)
T PF13716_consen 130 HID 132 (149)
T ss_dssp TSG
T ss_pred hCC
Confidence 643
No 108
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=41.13 E-value=2.5e+02 Score=24.65 Aligned_cols=86 Identities=9% Similarity=-0.012 Sum_probs=46.6
Q ss_pred ccHHHHHHHHHHHhhhcC-CcEEEecC-CCcccchHHHHHHHHHHHHHHhcCCcEEEEecC---hhHHHHHhhcCCCCeE
Q psy2736 121 PSVDYVSNLVTKHSIKQG-IPVVVDCS-HIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLK---PSVVAVFEGVQPKDFV 195 (211)
Q Consensus 121 ~n~~~~~~~l~~~~~~~~-~~vIlD~s-~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~---~~v~~~l~~~g~~~~~ 195 (211)
.+.+.+.+.++...+++. +.+++.+. .....|. -.+.+.+..++. +.+.+++.+-.. +..++.|+..|+ .+.
T Consensus 293 ~~~e~~~~aL~~l~~d~~vd~vlv~~~~~~~~~~~-va~~i~~~~~~~-~~~kPvv~~~~g~~~~~~~~~L~~~Gi-~ip 369 (388)
T PRK00696 293 ATAERVAEAFKIILSDPNVKAILVNIFGGITRCDV-IAEGIIAAVKEV-GVTVPLVVRLEGTNVELGKKILAESGL-NII 369 (388)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHH-HHHHHHHHHHhc-CCCCcEEEEeCCCCHHHHHHHHHHCCC-Cce
Confidence 455777777776665432 44444333 2222211 223333333221 156677544322 345555666553 477
Q ss_pred EecChHHHHHHHhh
Q psy2736 196 VYYDSRELDHLLRS 209 (211)
Q Consensus 196 i~~~~~ea~~~l~~ 209 (211)
+|++.+++.+.+.+
T Consensus 370 ~f~~pe~A~~al~~ 383 (388)
T PRK00696 370 AADTLDDAAQKAVE 383 (388)
T ss_pred ecCCHHHHHHHHHH
Confidence 99999999998865
No 109
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=40.01 E-value=1.5e+02 Score=21.68 Aligned_cols=70 Identities=11% Similarity=0.149 Sum_probs=44.1
Q ss_pred CcEEEecCCCcc--cchHHHHHHHHHH-HHHHhcCCcEEEEecChhHHHHHhhcC---C----CCeEEecC--hHHHHHH
Q psy2736 139 IPVVVDCSHIYG--ADFTAAKVIEVLC-QNFSRRGQPLFFFNLKPSVVAVFEGVQ---P----KDFVVYYD--SRELDHL 206 (211)
Q Consensus 139 ~~vIlD~s~v~~--iD~t~l~~L~~~~-~~~~~~g~~l~l~~~~~~v~~~l~~~g---~----~~~~i~~~--~~ea~~~ 206 (211)
-.+|+|+++++. .|.+-++.+.++. +.+-.+=.++++++++.-+.-.++... . ..+.++.+ .+++.++
T Consensus 64 ~~~i~D~~~~~~~~~~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~ 143 (158)
T smart00516 64 FTVIFDLKGLSMSNPDLSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEY 143 (158)
T ss_pred EEEEEECCCCCcccccHHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhh
Confidence 468999998765 4554444333333 344555678999999987775655554 1 23567776 6666666
Q ss_pred Hh
Q psy2736 207 LR 208 (211)
Q Consensus 207 l~ 208 (211)
+.
T Consensus 144 i~ 145 (158)
T smart00516 144 ID 145 (158)
T ss_pred CC
Confidence 53
No 110
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=38.93 E-value=1.5e+02 Score=22.83 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHHHhhhcC-CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEE
Q psy2736 121 PSVDYVSNLVTKHSIKQG-IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLF 174 (211)
Q Consensus 121 ~n~~~~~~~l~~~~~~~~-~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~ 174 (211)
.+.+.+.+.+.+..+++. +.|||+.... .-|....+.+.+.++++++.+++++
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~~~~-gg~~~~~~~~~~~i~~~~~~~kpVi 75 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRVNSP-GGSVTASEVIRAELAAARAAGKPVV 75 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEeeCC-CcCHHHHHHHHHHHHHHHhCCCCEE
Confidence 356788888887765432 6788888643 4577777777777888877666544
No 111
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=38.05 E-value=1.3e+02 Score=24.93 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=39.7
Q ss_pred CceEEEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHH
Q psy2736 106 GIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQ 164 (211)
Q Consensus 106 ~~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~ 164 (211)
+.++..+++.. ..-...+++++.+.++-.+..+.+|||++.=..=+.+.+..+..+.-
T Consensus 63 ~~~IGYi~i~~-F~~~~~~~l~~a~~~l~~~~~~~LIlDLR~N~GG~~~~a~~las~f~ 120 (256)
T cd07561 63 GKKVGYLVYNS-FTSGYDDELNQAFAEFKAQGVTELVLDLRYNGGGLVSSANLLASLLA 120 (256)
T ss_pred CCcEEEEEECc-cccchHHHHHHHHHHHHHcCCCeEEEEeCCCCCccHHHHHHHHHHhc
Confidence 34577777775 22345688888888876655689999999887766655555544443
No 112
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=37.74 E-value=1.6e+02 Score=24.23 Aligned_cols=80 Identities=11% Similarity=0.062 Sum_probs=60.4
Q ss_pred CceEEEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHH
Q psy2736 106 GIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAV 185 (211)
Q Consensus 106 ~~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~ 185 (211)
+.+...+-+-.+|.--+...+++++...+++ +..-+.|++-..+|...++.+.++++++++.|+ ++++ .|+-...
T Consensus 69 g~~LvrviVpk~Ll~q~~~~L~~~lg~l~~r--~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~g-ill~--~PEhilS 143 (229)
T PF12340_consen 69 GSRLVRVIVPKALLEQMRQMLRSRLGGLLNR--RIYHLPFSRSTPLTPETLEKIRQLLEECMRSGG-ILLA--TPEHILS 143 (229)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHHHhCC--eeEEecccCCCCCCHHHHHHHHHHHHHHHHcCC-EEEe--ChHHHHH
Confidence 3455666677778888899999999877754 577899999999999999999999999988776 4443 4444555
Q ss_pred HhhcC
Q psy2736 186 FEGVQ 190 (211)
Q Consensus 186 l~~~g 190 (211)
|+..+
T Consensus 144 f~L~~ 148 (229)
T PF12340_consen 144 FKLKG 148 (229)
T ss_pred HHHHH
Confidence 55444
No 113
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=36.88 E-value=1e+02 Score=21.00 Aligned_cols=45 Identities=9% Similarity=0.066 Sum_probs=29.4
Q ss_pred HHHHHHhcCCcEEEE-ecChhHHHHHhhcCCCCeEEe-cChHHHHHH
Q psy2736 162 LCQNFSRRGQPLFFF-NLKPSVVAVFEGVQPKDFVVY-YDSRELDHL 206 (211)
Q Consensus 162 ~~~~~~~~g~~l~l~-~~~~~v~~~l~~~g~~~~~i~-~~~~ea~~~ 206 (211)
+.+.+.+.|++++++ ++.+...+.|+..|+..+..- .+.+|+++.
T Consensus 55 ~~~~l~~~~v~~vi~~~iG~~~~~~l~~~gI~v~~~~~~~i~~vl~~ 101 (103)
T cd00851 55 AAEFLADEGVDVVIVGGIGPRALNKLRNAGIKVYKGAEGTVEEAIEA 101 (103)
T ss_pred HHHHHHHcCCCEEEeCCCCcCHHHHHHHCCCEEEEcCCCCHHHHHHh
Confidence 444455578888877 567888899998886544322 355555543
No 114
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=36.77 E-value=2e+02 Score=22.32 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=37.0
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHH
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVV 183 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~ 183 (211)
|+.+++| +....+|....+.+.+.++++.++|..++++.-+.+..
T Consensus 108 p~llLlD-EPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 108 GTLFILD-EPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL 152 (176)
T ss_pred CCEEEEe-CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 5667776 55899999999999999999988889988887776543
No 115
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=36.57 E-value=2.1e+02 Score=22.98 Aligned_cols=52 Identities=10% Similarity=0.152 Sum_probs=39.4
Q ss_pred HHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHH
Q psy2736 132 KHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVA 184 (211)
Q Consensus 132 ~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~ 184 (211)
+.+-.+|+.+++| +..+.+|....+.+.++++++++++..++++.-+.+..+
T Consensus 158 ral~~~p~illLD-EPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~ 209 (248)
T PRK09580 158 QMAVLEPELCILD-ESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILD 209 (248)
T ss_pred HHHHcCCCEEEEe-CCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 3333446777777 559999999999999999999888888888766655443
No 116
>PF04895 DUF651: Archaeal protein of unknown function (DUF651); InterPro: IPR006979 This conserved region is found in the C-terminal region of a number of conserved archaeal proteins of unknown function.
Probab=36.39 E-value=1.2e+02 Score=22.00 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=23.0
Q ss_pred EEEEecChhHHHHHhhcCCCCeEEecChHHHHHHHhhhC
Q psy2736 173 LFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLRSKM 211 (211)
Q Consensus 173 l~l~~~~~~v~~~l~~~g~~~~~i~~~~~ea~~~l~~~~ 211 (211)
+=.+.+.+.+++.|+.- -..|+|++||.+++.+++
T Consensus 50 lGvW~VRE~vR~A~~~~----p~~f~~l~eAl~~~~~~l 84 (110)
T PF04895_consen 50 LGVWQVRENVRKAMKGK----PEKFETLEEALEYVSSRL 84 (110)
T ss_pred eeeehHHHHHHHHHhCC----CcccCCHHHHHHHHHHHh
Confidence 33344455555555433 368999999999988764
No 117
>PRK10949 protease 4; Provisional
Probab=35.05 E-value=1.6e+02 Score=28.04 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhcC-CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEE
Q psy2736 125 YVSNLVTKHSIKQG-IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFF 175 (211)
Q Consensus 125 ~~~~~l~~~~~~~~-~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l 175 (211)
.+.+.++++-+++. +-|+||.+....-..+.++-|.+.++++++.|.+++-
T Consensus 99 div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA 150 (618)
T PRK10949 99 DIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYA 150 (618)
T ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEE
Confidence 45566666544332 6899999988777777788888888899888877654
No 118
>PLN02334 ribulose-phosphate 3-epimerase
Probab=34.94 E-value=1.1e+02 Score=24.66 Aligned_cols=34 Identities=6% Similarity=-0.160 Sum_probs=18.8
Q ss_pred eecccHHHHHHHHHHHhhhcCCcEEEecCCCccc
Q psy2736 118 LIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGA 151 (211)
Q Consensus 118 L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~i 151 (211)
+.-.+-..+.+.++++.+...+.+-+|...-++.
T Consensus 14 ~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~ 47 (229)
T PLN02334 14 ILSADFANLAEEAKRVLDAGADWLHVDVMDGHFV 47 (229)
T ss_pred hhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcC
Confidence 3334445566666666554345666666555444
No 119
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=34.83 E-value=1.3e+02 Score=20.90 Aligned_cols=38 Identities=8% Similarity=-0.106 Sum_probs=27.9
Q ss_pred cCCcEEEE-ecChhHHHHHhhcCCCCeEEec--ChHHHHHH
Q psy2736 169 RGQPLFFF-NLKPSVVAVFEGVQPKDFVVYY--DSRELDHL 206 (211)
Q Consensus 169 ~g~~l~l~-~~~~~v~~~l~~~g~~~~~i~~--~~~ea~~~ 206 (211)
+|.+++++ ++-+...+.|+..|+..+..-+ +.+|+++.
T Consensus 64 ~~~~vvi~~~iG~~a~~~L~~~GI~v~~~~~~~~v~eal~~ 104 (106)
T cd00852 64 SDCDAVLCAKIGDEPKEKLEEAGIEVIEAYAGEYIEEALLE 104 (106)
T ss_pred cCCcEEeehhhCccHHHHHHHCCCEEEEecCcCcHHHHHHH
Confidence 58887777 5678888899998876665544 66777654
No 120
>KOG0061|consensus
Probab=33.82 E-value=2.1e+02 Score=27.03 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=43.6
Q ss_pred EEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEec---ChhHHHHHhhcCC--CCe-EEecChHHHHHHHhh
Q psy2736 141 VVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNL---KPSVVAVFEGVQP--KDF-VVYYDSRELDHLLRS 209 (211)
Q Consensus 141 vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~---~~~v~~~l~~~g~--~~~-~i~~~~~ea~~~l~~ 209 (211)
|++=-+.-+.+|++....+.++.+++.+.|.. +++.+ +.++.+.|++.=. .+- ..+-..+++.+++++
T Consensus 191 iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grt-Vi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~ 264 (613)
T KOG0061|consen 191 ILFLDEPTSGLDSFSALQVVQLLKRLARSGRT-VICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSS 264 (613)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHHHHhCCCE-EEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHh
Confidence 44444668899999999999999999888554 44444 4455555555431 223 344466777777654
No 121
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=33.56 E-value=1.4e+02 Score=19.70 Aligned_cols=51 Identities=10% Similarity=0.157 Sum_probs=26.1
Q ss_pred CcEEEecCCCcccch-HHHHHHHHHHHHHH-hcCCcEEEEecCh---hHHHHHhhc
Q psy2736 139 IPVVVDCSHIYGADF-TAAKVIEVLCQNFS-RRGQPLFFFNLKP---SVVAVFEGV 189 (211)
Q Consensus 139 ~~vIlD~s~v~~iD~-t~l~~L~~~~~~~~-~~g~~l~l~~~~~---~v~~~l~~~ 189 (211)
++++|++..-.--.+ ..+..|.++++++. ..+.+++..++.+ +..+.++..
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN 57 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence 456666654433332 24556777777777 4455566665543 334444444
No 122
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=33.55 E-value=2.5e+02 Score=23.74 Aligned_cols=76 Identities=11% Similarity=0.170 Sum_probs=51.6
Q ss_pred EEccCcceecccHHHH--------HHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEE----EEec
Q psy2736 111 LLTPDRCLIFPSVDYV--------SNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLF----FFNL 178 (211)
Q Consensus 111 v~~~~g~L~F~n~~~~--------~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~----l~~~ 178 (211)
++-++||..|.-..++ -+-+++++++.++.+|+|=.-+...++ -+.|.++.+...+.|+++. +.|.
T Consensus 204 v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~lViDHHllRD~~y--~e~l~~l~~~~~~~GV~v~TaAE~lG~ 281 (304)
T COG2248 204 VLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATLVIDHHLLRDKNY--REFLEELFERAEKAGVEVATAAEFLGV 281 (304)
T ss_pred EEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcceEEEeehhhcCCCH--HHHHHHHHhhHhhcCceeeeHHHHcCC
Confidence 6667898874322222 233444555556889999888887776 5788889999989898874 4466
Q ss_pred ChhHHHHHhh
Q psy2736 179 KPSVVAVFEG 188 (211)
Q Consensus 179 ~~~v~~~l~~ 188 (211)
.+...+..++
T Consensus 282 ~~~lLEA~Rk 291 (304)
T COG2248 282 EEELLEAYRK 291 (304)
T ss_pred chHHHHHHHH
Confidence 6666665543
No 123
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=33.50 E-value=1.7e+02 Score=22.85 Aligned_cols=54 Identities=11% Similarity=0.061 Sum_probs=42.8
Q ss_pred CCcEEEecCCCccc-chHHHHHHHHHHHHHHhcCCcEEEEecC-hhHHHHHhhcCC
Q psy2736 138 GIPVVVDCSHIYGA-DFTAAKVIEVLCQNFSRRGQPLFFFNLK-PSVVAVFEGVQP 191 (211)
Q Consensus 138 ~~~vIlD~s~v~~i-D~t~l~~L~~~~~~~~~~g~~l~l~~~~-~~v~~~l~~~g~ 191 (211)
+..|-+|.+-+..+ |......+..+.+..++.|.+++..|+. ++-.+.++..|.
T Consensus 170 ~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~~~~~~l~~~G~ 225 (236)
T PF00563_consen 170 PDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIKVIAEGVESEEQLELLKELGV 225 (236)
T ss_dssp GSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEEEECE-SHHHHHHHHHTTE
T ss_pred cccceeecccccccchhhHHHHHHHHHHHhhccccccceeecCCHHHHHHHHHcCC
Confidence 47899999988776 5667778888999999999999999995 667777777773
No 124
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=32.95 E-value=91 Score=24.40 Aligned_cols=34 Identities=26% Similarity=0.611 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHH
Q psy2736 153 FTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVF 186 (211)
Q Consensus 153 ~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l 186 (211)
.+|.+.+.++++...+++.+++|.|-++++.+.+
T Consensus 31 v~G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~ 64 (177)
T TIGR00696 31 VAGPDLMEELCQRAGKEKLPIFLYGGKPDVLQQL 64 (177)
T ss_pred cChHHHHHHHHHHHHHcCCeEEEECCCHHHHHHH
Confidence 3477889999999999999999999999884444
No 125
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=32.69 E-value=2.7e+02 Score=22.60 Aligned_cols=47 Identities=9% Similarity=0.093 Sum_probs=37.5
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHH
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVA 184 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~ 184 (211)
.|+.+++| +....+|....+.+.++++++++.|..++++.-+.+...
T Consensus 170 ~p~llllD-EPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~ 216 (257)
T PRK10619 170 EPEVLLFD-EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFAR 216 (257)
T ss_pred CCCEEEEe-CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 35667777 458999999999999999999888888888866665444
No 126
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=32.67 E-value=1.5e+02 Score=24.10 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=36.7
Q ss_pred CcEEEecCCCcc-cchHHHHHHHHHHHHHHhcCCcEEEEec--ChhHHHHHhhcCCCC
Q psy2736 139 IPVVVDCSHIYG-ADFTAAKVIEVLCQNFSRRGQPLFFFNL--KPSVVAVFEGVQPKD 193 (211)
Q Consensus 139 ~~vIlD~s~v~~-iD~t~l~~L~~~~~~~~~~g~~l~l~~~--~~~v~~~l~~~g~~~ 193 (211)
+.+.+|+.+--. =|..--....+.+++++++|+.+.++.= ...++..++..+...
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 4 KLLAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred eEEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 456777765322 2333445666667788899999999844 467788888888654
No 127
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=32.27 E-value=1.4e+02 Score=24.51 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCcEEEEecC--hhHHHHHhhcCC
Q psy2736 159 IEVLCQNFSRRGQPLFFFNLK--PSVVAVFEGVQP 191 (211)
Q Consensus 159 L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~g~ 191 (211)
-.+.++.+++.|+++.++.=+ ..+...++..++
T Consensus 26 ~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l 60 (273)
T PRK00192 26 AKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGL 60 (273)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCC
Confidence 344556666777777776433 345566666664
No 128
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=32.24 E-value=2.8e+02 Score=23.83 Aligned_cols=57 Identities=9% Similarity=-0.047 Sum_probs=37.1
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhhcCC--CCeEEecCh
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQP--KDFVVYYDS 200 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g~--~~~~i~~~~ 200 (211)
.++.|++ ...-|...+++... ..++.-.+.+|.|-.+.+++.++..|. .++.|.+..
T Consensus 14 ~~~riv~----~e~~d~~vl~Aa~~---a~~eg~~~piLvG~~~~I~~~~~~~g~~~~~~eII~~~ 72 (324)
T PRK09653 14 KKKKIVL----PEGEDERVLKAAKR---LQKEGLVEPILLGNPEEIRAKAKELGLDLDGVEIIDPE 72 (324)
T ss_pred CCCEEEE----eCCCCHHHHHHHHH---HHHCCCceEEEECCHHHHHHHHHHcCCCcCCCEEECCC
Confidence 3455665 22336655555444 333444789999999999999998873 467776653
No 129
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=32.23 E-value=96 Score=23.75 Aligned_cols=55 Identities=13% Similarity=0.085 Sum_probs=34.8
Q ss_pred CcEEEecCCCcccchH---------H----HHHHHHHHHHHHhcCCcEEEEecCh--------------hHHHHHhhcCC
Q psy2736 139 IPVVVDCSHIYGADFT---------A----AKVIEVLCQNFSRRGQPLFFFNLKP--------------SVVAVFEGVQP 191 (211)
Q Consensus 139 ~~vIlD~s~v~~iD~t---------~----l~~L~~~~~~~~~~g~~l~l~~~~~--------------~v~~~l~~~g~ 191 (211)
+.+++|..++-..+-+ - .....++++.++++|.++.++.=++ .+.+.|+..|+
T Consensus 14 k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl 93 (166)
T TIGR01664 14 KVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKV 93 (166)
T ss_pred cEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCC
Confidence 5677777765333111 1 1346677888888899888875433 35677888886
Q ss_pred CC
Q psy2736 192 KD 193 (211)
Q Consensus 192 ~~ 193 (211)
..
T Consensus 94 ~~ 95 (166)
T TIGR01664 94 PI 95 (166)
T ss_pred CE
Confidence 43
No 130
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=32.10 E-value=2.4e+02 Score=22.49 Aligned_cols=49 Identities=10% Similarity=0.128 Sum_probs=38.3
Q ss_pred hcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHH
Q psy2736 136 KQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAV 185 (211)
Q Consensus 136 ~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~ 185 (211)
.+|+.+++| +....+|....+.+.++++++.++|..++++.-+.+....
T Consensus 161 ~~p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~ 209 (243)
T TIGR01978 161 LEPKLAILD-EIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNY 209 (243)
T ss_pred cCCCEEEec-CCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHh
Confidence 345777777 5589999999999999999998888888887666554433
No 131
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.01 E-value=2.1e+02 Score=21.18 Aligned_cols=24 Identities=0% Similarity=0.083 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHh--cCCcEEEEec
Q psy2736 155 AAKVIEVLCQNFSR--RGQPLFFFNL 178 (211)
Q Consensus 155 ~l~~L~~~~~~~~~--~g~~l~l~~~ 178 (211)
-.+.+.++++.+++ .+.+++++++
T Consensus 70 ~~~~l~~li~~~~~~~~~~~vi~~~~ 95 (169)
T cd01828 70 IVANYRTILEKLRKHFPNIKIVVQSI 95 (169)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 34556666666666 5666666655
No 132
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=31.86 E-value=2e+02 Score=21.66 Aligned_cols=41 Identities=12% Similarity=0.219 Sum_probs=30.1
Q ss_pred HHHHHHhcCCcEEEEecChhHHHHHhhcCCCCeEEecChHHHHH
Q psy2736 162 LCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDH 205 (211)
Q Consensus 162 ~~~~~~~~g~~l~l~~~~~~v~~~l~~~g~~~~~i~~~~~ea~~ 205 (211)
+.+.+.+.|.++..++.+++-.+.+...+ ...+++.+|+.+
T Consensus 16 ~a~~L~~~g~~v~~~d~~~~~~~~~~~~g---~~~~~s~~e~~~ 56 (163)
T PF03446_consen 16 MARNLAKAGYEVTVYDRSPEKAEALAEAG---AEVADSPAEAAE 56 (163)
T ss_dssp HHHHHHHTTTEEEEEESSHHHHHHHHHTT---EEEESSHHHHHH
T ss_pred HHHHHHhcCCeEEeeccchhhhhhhHHhh---hhhhhhhhhHhh
Confidence 45666788999999999888887777766 556666666554
No 133
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=31.85 E-value=2.6e+02 Score=22.17 Aligned_cols=44 Identities=11% Similarity=0.230 Sum_probs=35.6
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChh
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPS 181 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~ 181 (211)
.|+.+++|= ....+|....+.+.++++++.++|..++++.-+.+
T Consensus 131 ~p~llilDE-P~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~ 174 (223)
T TIGR03771 131 RPSVLLLDE-PFTGLDMPTQELLTELFIELAGAGTAILMTTHDLA 174 (223)
T ss_pred CCCEEEEeC-CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 356777774 58899999999999999999888888888765554
No 134
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=31.83 E-value=48 Score=23.47 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHHHhhhcCC-cEEEecCCCccc-chHHHHHHHHHHHHHHhcCCcEEEEecC
Q psy2736 121 PSVDYVSNLVTKHSIKQGI-PVVVDCSHIYGA-DFTAAKVIEVLCQNFSRRGQPLFFFNLK 179 (211)
Q Consensus 121 ~n~~~~~~~l~~~~~~~~~-~vIlD~s~v~~i-D~t~l~~L~~~~~~~~~~g~~l~l~~~~ 179 (211)
.+...+.+.+.+...+... .+||| .++.+ +. +.+..+..-+.+.+.++++++.+
T Consensus 70 ~~~~~l~~~~~~~l~~~~~~~lviD--e~~~l~~~---~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 70 QTSDELRSLLIDALDRRRVVLLVID--EADHLFSD---EFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp S-HHHHHHHHHHHHHHCTEEEEEEE--TTHHHHTH---HHHHHHHHHTCSCBEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEe--ChHhcCCH---HHHHHHHHHHhCCCCeEEEEECh
Confidence 4566666777776665433 35555 45555 53 34444433334778889998876
No 135
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=31.46 E-value=1.8e+02 Score=22.87 Aligned_cols=32 Identities=9% Similarity=-0.021 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCcEEEEecC--hhHHHHHhhcCC
Q psy2736 160 EVLCQNFSRRGQPLFFFNLK--PSVVAVFEGVQP 191 (211)
Q Consensus 160 ~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~g~ 191 (211)
.+.+++++++|+++.++.=+ ..+...++..+.
T Consensus 26 ~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 59 (230)
T PRK01158 26 VEAIRKAEKLGIPVILATGNVLCFARAAAKLIGT 59 (230)
T ss_pred HHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCC
Confidence 34445556666666666433 234444445543
No 136
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=31.27 E-value=2.5e+02 Score=21.77 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=35.8
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhH
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSV 182 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v 182 (211)
.|+.+++| +....+|....+.+.++++++++++..++++.-++..
T Consensus 145 ~p~~lilD-EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 189 (200)
T PRK13540 145 KAKLWLLD-EPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP 189 (200)
T ss_pred CCCEEEEe-CCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh
Confidence 46777777 4588999999999999999988778888887555443
No 137
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=31.19 E-value=1.8e+02 Score=24.96 Aligned_cols=54 Identities=13% Similarity=0.004 Sum_probs=36.9
Q ss_pred ceEEEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHH
Q psy2736 107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEV 161 (211)
Q Consensus 107 ~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~ 161 (211)
.++..+++.+ +.....++|++.+.++..+..+.+|||++.=..=+...+..+..
T Consensus 151 ~~igYi~i~~-f~~~~~~~~~~~l~~l~~~~~~~lIiDLR~N~GG~~~~a~~~a~ 204 (334)
T TIGR00225 151 KSVGYIRISS-FSEHTTEDVKKALDKLEKKNAKGYILDLRGNPGGLLQSAVDISR 204 (334)
T ss_pred cEEEEEEEEe-cccchHHHHHHHHHHHHhccCceEEEEcCCCCCCCHHHHHHHHH
Confidence 3566777765 34456778888887765444588999999887777665544444
No 138
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=31.16 E-value=1.9e+02 Score=23.10 Aligned_cols=50 Identities=8% Similarity=-0.007 Sum_probs=33.6
Q ss_pred EEEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHH
Q psy2736 109 YLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVI 159 (211)
Q Consensus 109 i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L 159 (211)
+..+++.. +.-...++|++.+.++..+..+.+|||++.-..=+......+
T Consensus 50 igYi~i~s-f~~~~~~~~~~~l~~~~~~~~~~lIlDLR~N~GG~~~~~~~i 99 (211)
T cd07560 50 IGYIRITS-FSENTAEELKKALKELKKQGMKGLILDLRNNPGGLLDEAVEI 99 (211)
T ss_pred eEEEEEcc-cCchhHHHHHHHHHHHHhccCceEEEEcCCCCCCCHHHHHHH
Confidence 55666665 233455788888887765545899999998887766544433
No 139
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=31.11 E-value=1.8e+02 Score=25.00 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCcEEEEecC--hhHHHHHhhcCCC
Q psy2736 159 IEVLCQNFSRRGQPLFFFNLK--PSVVAVFEGVQPK 192 (211)
Q Consensus 159 L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~g~~ 192 (211)
-.+.+++++++|+.++++.-+ .++...++..++.
T Consensus 23 a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 23 ARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 345567777788888887543 4566666666654
No 140
>smart00245 TSPc tail specific protease. tail specific protease
Probab=31.05 E-value=1.9e+02 Score=22.56 Aligned_cols=52 Identities=12% Similarity=-0.019 Sum_probs=34.5
Q ss_pred ceEEEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHH
Q psy2736 107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVI 159 (211)
Q Consensus 107 ~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L 159 (211)
.++..+++.. +...+.+.+++.+.++.+...+.+|||++.-..=+...+..+
T Consensus 28 ~~igYi~i~~-f~~~~~~~~~~~~~~l~~~~~~~lIiDLR~N~GG~~~~~~~~ 79 (192)
T smart00245 28 GNIGYIRIPE-FSEHTSNLVEKAWKKLEKTNVEGLILDLRNNPGGLLSAAIDV 79 (192)
T ss_pred CcEEEEEEeE-EChhhHHHHHHHHHHHHhCCCcEEEEEecCCCCCCHHHHHHH
Confidence 3566677754 333456888888888766545899999998766554444333
No 141
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=30.91 E-value=2.1e+02 Score=22.19 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=33.5
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecC
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLK 179 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~ 179 (211)
+|+.+++| +....+|....+.+.++++++.+.|..++++.-+
T Consensus 145 ~p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~ 186 (198)
T TIGR01189 145 RAPLWILD-EPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQ 186 (198)
T ss_pred CCCEEEEe-CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 35777777 4588999999999999999987778777776543
No 142
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=30.78 E-value=2.8e+02 Score=22.31 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=37.9
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHH
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAV 185 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~ 185 (211)
+|+.+++| +....+|..+.+.|.++++++.++|..++++.-..+..+.
T Consensus 169 ~p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~ 216 (252)
T CHL00131 169 DSELAILD-ETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDY 216 (252)
T ss_pred CCCEEEEc-CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 35667776 5599999999999999999998778888888666555443
No 143
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=30.54 E-value=1e+02 Score=23.66 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=34.4
Q ss_pred cCceEEEEccCcceecccHHHHHHHHHHHhhhc--CCcEEEecCC
Q psy2736 105 VGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQ--GIPVVVDCSH 147 (211)
Q Consensus 105 ~~~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~--~~~vIlD~s~ 147 (211)
+.+.+.|+.++|++.-..++.+++.+...+.-. .+-|++.+..
T Consensus 96 ~~~r~~VldF~Gdi~A~~v~~LReeisail~~a~~~DeV~~rLES 140 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASEVESLREEISAILSVATPEDEVLVRLES 140 (155)
T ss_pred CCCeEEEEecCCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEec
Confidence 357899999999999999999999998876532 2568877754
No 144
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.52 E-value=2.6e+02 Score=21.75 Aligned_cols=45 Identities=11% Similarity=0.256 Sum_probs=36.1
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhH
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSV 182 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v 182 (211)
+|+.+++| +..+.+|....+.+.++++++.+++..++++.-..+.
T Consensus 146 ~p~~lllD-EP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 190 (210)
T cd03269 146 DPELLILD-EPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL 190 (210)
T ss_pred CCCEEEEe-CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 35777787 4579999999999999999998778888887665543
No 145
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=30.42 E-value=2.6e+02 Score=21.73 Aligned_cols=43 Identities=7% Similarity=0.063 Sum_probs=34.6
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChh
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPS 181 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~ 181 (211)
|+.+++| +....+|..+.+.+.++++++++.|..++++.-..+
T Consensus 154 p~llllD-EP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~ 196 (213)
T cd03262 154 PKVMLFD-EPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG 196 (213)
T ss_pred CCEEEEe-CCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 5677777 458899999999999999999887888877755443
No 146
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=30.38 E-value=2.7e+02 Score=21.79 Aligned_cols=55 Identities=7% Similarity=0.083 Sum_probs=41.8
Q ss_pred CCcEEEecCCCcccc--hHHHHHHHHHHHHHHhcCCcEEEEec-ChhHHHHHhhcCCC
Q psy2736 138 GIPVVVDCSHIYGAD--FTAAKVIEVLCQNFSRRGQPLFFFNL-KPSVVAVFEGVQPK 192 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD--~t~l~~L~~~~~~~~~~g~~l~l~~~-~~~v~~~l~~~g~~ 192 (211)
+..|-||.+-+..+. ......+..+.+..+..|++++..++ +++-.+.++..|..
T Consensus 169 ~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~~~~~~l~~~Gi~ 226 (241)
T smart00052 169 VDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVETPEQLDLLRSLGCD 226 (241)
T ss_pred CCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHcCCC
Confidence 366778877776653 33556788888888899999999999 46778888888854
No 147
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=30.11 E-value=2.2e+02 Score=22.31 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=5.0
Q ss_pred EEEccCcceec
Q psy2736 110 LLLTPDRCLIF 120 (211)
Q Consensus 110 ~v~~~~g~L~F 120 (211)
....++|-|..
T Consensus 4 v~~DlDGTLl~ 14 (215)
T TIGR01487 4 VAIDIDGTLTE 14 (215)
T ss_pred EEEecCCCcCC
Confidence 33445555443
No 148
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=30.01 E-value=3.2e+02 Score=22.68 Aligned_cols=76 Identities=16% Similarity=0.099 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChh-HHHHHhhcCCCCeEEecChHHH
Q psy2736 125 YVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPS-VVAVFEGVQPKDFVVYYDSREL 203 (211)
Q Consensus 125 ~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~-v~~~l~~~g~~~~~i~~~~~ea 203 (211)
.+.+...+...+ .+.++++......++ ...+..+.+..+++|.++.+- ++.. ....++..... ..++++.+|+
T Consensus 115 ~~~~~~~~~~~~-~~~v~~~g~~~~~~~---~~~~~~~~~~a~~~g~~v~~D-~~~~~~~~~~~~~~~~-dil~~n~~E~ 188 (309)
T TIGR01231 115 GFLKHFEQLLEK-VEVVAISGSLPKGLP---QDYYAQIIERCQNKGVPVVLD-CSGATLQTVLENPAKP-TVIKPNIEEL 188 (309)
T ss_pred HHHHHHHHHhcc-CCEEEEECCCCCCcC---HHHHHHHHHHHHhCCCeEEEE-CChHHHHHHHhccCCC-eEEcCCHHHH
Confidence 333433343332 467778776433232 356667788888877776554 4433 23333322212 2466677666
Q ss_pred HHH
Q psy2736 204 DHL 206 (211)
Q Consensus 204 ~~~ 206 (211)
...
T Consensus 189 ~~l 191 (309)
T TIGR01231 189 SQL 191 (309)
T ss_pred HHH
Confidence 544
No 149
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=29.75 E-value=2.7e+02 Score=21.67 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=35.7
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHH
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVV 183 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~ 183 (211)
|+.+++| +..+.+|....+.+.+++++++++|..++++.-+.+..
T Consensus 155 p~llllD-EPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~ 199 (214)
T cd03292 155 PTILIAD-EPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELV 199 (214)
T ss_pred CCEEEEe-CCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 5777777 45899999999999999999987788887776554433
No 150
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=29.64 E-value=1.7e+02 Score=21.45 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=33.2
Q ss_pred HHHHHHhcCCcEEEE-ecChhHHHHHhhcCCCCeE-EecChHHHHHHHh
Q psy2736 162 LCQNFSRRGQPLFFF-NLKPSVVAVFEGVQPKDFV-VYYDSRELDHLLR 208 (211)
Q Consensus 162 ~~~~~~~~g~~l~l~-~~~~~v~~~l~~~g~~~~~-i~~~~~ea~~~l~ 208 (211)
+.+.+.++|++++++ ++.+.-...|+..|++.+. --.+.+|+++.+.
T Consensus 57 ~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~ 105 (121)
T COG1433 57 IAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFL 105 (121)
T ss_pred HHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHh
Confidence 355667788888777 6688889999999865542 2257777776643
No 151
>KOG2227|consensus
Probab=29.51 E-value=94 Score=28.57 Aligned_cols=88 Identities=8% Similarity=0.090 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhH---HHHHhhc----CC-CCeE
Q psy2736 124 DYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSV---VAVFEGV----QP-KDFV 195 (211)
Q Consensus 124 ~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v---~~~l~~~----g~-~~~~ 195 (211)
.++.+.+.+...+....+++=+..+++++...-++|..+..+-.-.+.+++++|+-..+ -+.|-+. +. .+.-
T Consensus 241 ~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l 320 (529)
T KOG2227|consen 241 MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLL 320 (529)
T ss_pred HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCcee
Confidence 34445555554443457888889999999989999999988888888888888873322 2222222 22 3344
Q ss_pred Eec--ChHHHHHHHhhhC
Q psy2736 196 VYY--DSRELDHLLRSKM 211 (211)
Q Consensus 196 i~~--~~~ea~~~l~~~~ 211 (211)
.|+ |.++..+.|++||
T Consensus 321 ~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 321 VFPPYTKDQIVEILQQRL 338 (529)
T ss_pred eecCCCHHHHHHHHHHHH
Confidence 554 7899999999987
No 152
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=29.38 E-value=2.3e+02 Score=20.64 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=66.6
Q ss_pred ceEEEEccCcceecccHHHHHHHHHHHhhhcCCcEEEecCCCc--ccchHHHHHHHHHHHHHHhcCCcEEEEe------c
Q psy2736 107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIY--GADFTAAKVIEVLCQNFSRRGQPLFFFN------L 178 (211)
Q Consensus 107 ~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~--~iD~t~l~~L~~~~~~~~~~g~~l~l~~------~ 178 (211)
.++.++.-++.+. .+.....+-+....+.+...++++-+.++ +.|-+ -+.--++.+++..++.++.++| .
T Consensus 6 ~~v~~~~s~~~~i-~~~qdalDLi~~~~~~~~~~i~l~~~~l~~dFF~L~-TglAGeiLQKf~NY~iklAivGD~s~~~~ 83 (113)
T PF13788_consen 6 IRVAEVSSDEPLI-SDEQDALDLIGTAYEHGADRIILPKEALSEDFFDLR-TGLAGEILQKFVNYRIKLAIVGDFSAYAT 83 (113)
T ss_pred eEEEEEeCCCCee-cchhHHHHHHHHHHHcCCCEEEEEhHHCCHHHHHhh-cchHHHHHHHHHhhceeEEEEEccccccc
Confidence 3444454444443 55555556666665555688999988765 34442 2344567889999999988882 4
Q ss_pred ChhHHHHHhhcC-CCCeEEecChHHHHHHH
Q psy2736 179 KPSVVAVFEGVQ-PKDFVVYYDSRELDHLL 207 (211)
Q Consensus 179 ~~~v~~~l~~~g-~~~~~i~~~~~ea~~~l 207 (211)
++..++...-++ -.++..+++.+||.+-|
T Consensus 84 S~~l~dfi~EsN~G~~~~F~~~~~eA~~~L 113 (113)
T PF13788_consen 84 SKSLRDFIYESNRGNHFFFVPDEEEAIAWL 113 (113)
T ss_pred chhHHHHHHHhcCCCeEEEECCHHHHHhhC
Confidence 667777777776 46789999999998643
No 153
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=29.38 E-value=2.9e+02 Score=21.94 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=40.0
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecC--hhHHHHHhhcCCCCeEE-ecChHHHHHHHhh
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLK--PSVVAVFEGVQPKDFVV-YYDSRELDHLLRS 209 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~g~~~~~i-~~~~~ea~~~l~~ 209 (211)
.+..+++|.+ .-+..|++.++.+.+..-. .++++.... +......-+.|...+-. -.+.+++.++++.
T Consensus 46 ~pdvvl~Dl~---mP~~~G~e~~~~l~~~~p~--~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~ 116 (211)
T COG2197 46 KPDVVLLDLS---MPGMDGLEALKQLRARGPD--IKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRA 116 (211)
T ss_pred CCCEEEEcCC---CCCCChHHHHHHHHHHCCC--CcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Confidence 4678999954 3446788888888843333 355555443 44444444556555533 3456666666654
No 154
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=29.33 E-value=1.5e+02 Score=25.67 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=37.9
Q ss_pred cchHHHHHHHHHHHHHHhc-CCcEEEEecChhHHHHHhhcCC--CCeEEecChH
Q psy2736 151 ADFTAAKVIEVLCQNFSRR-GQPLFFFNLKPSVVAVFEGVQP--KDFVVYYDSR 201 (211)
Q Consensus 151 iD~t~l~~L~~~~~~~~~~-g~~l~l~~~~~~v~~~l~~~g~--~~~~i~~~~~ 201 (211)
=|..--..++...+.+++. ..++++++-.+.+++.++..+. ..+.|.+..+
T Consensus 11 gD~~p~~vl~aa~~a~~~~~~~~~iLvG~~~~I~~~l~~~~~~~~~~~Iv~~~~ 64 (334)
T PRK05331 11 GDFGPEVVVPGALQALKEHPDLEIILVGDEEKIKPLLAKKPDLKERIEIVHASE 64 (334)
T ss_pred CccCHHHHHHHHHHHHhcCCCeEEEEEeCHHHHHHHHHhcCCCcCCcEEEeCCC
Confidence 3666666777777777776 5899999999999999988773 3466666544
No 155
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=29.27 E-value=2.7e+02 Score=21.60 Aligned_cols=47 Identities=11% Similarity=0.240 Sum_probs=36.6
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHH
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVA 184 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~ 184 (211)
+|+.+++| +....+|....+.+.++++++.+++..++++.-+.+..+
T Consensus 122 ~p~illlD-EPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 122 EPDLAILD-EPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred CCCEEEEe-CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 35667777 458899999999999999999877888888766655443
No 156
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=29.26 E-value=1.2e+02 Score=23.41 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=29.6
Q ss_pred cchHHHHHHHHHHHHHHhcCCcEEEEecChhHHH
Q psy2736 151 ADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVA 184 (211)
Q Consensus 151 iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~ 184 (211)
-..++.+.+.++++...+++.+++|.|-++++.+
T Consensus 29 ~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~ 62 (172)
T PF03808_consen 29 ERVTGSDLFPDLLRRAEQRGKRIFLLGGSEEVLE 62 (172)
T ss_pred cccCHHHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence 4556888899999999999999999999998877
No 157
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=29.14 E-value=2.9e+02 Score=21.77 Aligned_cols=46 Identities=9% Similarity=0.051 Sum_probs=35.6
Q ss_pred cCCcEEEecCCCcccchHHHH-HHHHHHHHHHhc-CCcEEEEecChhHH
Q psy2736 137 QGIPVVVDCSHIYGADFTAAK-VIEVLCQNFSRR-GQPLFFFNLKPSVV 183 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~-~L~~~~~~~~~~-g~~l~l~~~~~~v~ 183 (211)
.++.+++| +....+|....+ .+.++++++++. +..++++.-.++..
T Consensus 139 ~p~illlD-EP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~ 186 (204)
T cd03240 139 NCGILALD-EPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELV 186 (204)
T ss_pred CCCEEEEc-CCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHH
Confidence 45677777 448889999999 999999998776 77777776665543
No 158
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=29.08 E-value=3.2e+02 Score=26.50 Aligned_cols=82 Identities=9% Similarity=-0.004 Sum_probs=48.4
Q ss_pred cccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCc-E-EEEe-c-ChhHHHHHhhcCCCCe-
Q psy2736 120 FPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQP-L-FFFN-L-KPSVVAVFEGVQPKDF- 194 (211)
Q Consensus 120 F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~-l-~l~~-~-~~~v~~~l~~~g~~~~- 194 (211)
|.+.+.+-+... +.+.+.++| +..|.+-.+....+.+.+++.|.+ + ++++ . .++-.+.++..|.+.|
T Consensus 619 ~~s~e~~v~aa~---~~~a~ivvl-----cs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i 690 (714)
T PRK09426 619 FQTPEEAARQAV---ENDVHVVGV-----SSLAAGHKTLVPALIEALKKLGREDIMVVVGGVIPPQDYDFLYEAGVAAIF 690 (714)
T ss_pred CCCHHHHHHHHH---HcCCCEEEE-----eccchhhHHHHHHHHHHHHhcCCCCcEEEEeCCCChhhHHHHHhCCCCEEE
Confidence 355665544443 233344554 345777777788899999999753 3 4454 3 3444478999997654
Q ss_pred EEecChHHHHHHHhh
Q psy2736 195 VVYYDSRELDHLLRS 209 (211)
Q Consensus 195 ~i~~~~~ea~~~l~~ 209 (211)
..=.+..+.++.+.+
T Consensus 691 ~~g~d~~~~L~~l~~ 705 (714)
T PRK09426 691 GPGTVIADAAIDLLE 705 (714)
T ss_pred CCCCCHHHHHHHHHH
Confidence 333355555555444
No 159
>PRK10976 putative hydrolase; Provisional
Probab=28.97 E-value=2e+02 Score=23.28 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCCcEEEEecC--hhHHHHHhhcCC
Q psy2736 160 EVLCQNFSRRGQPLFFFNLK--PSVVAVFEGVQP 191 (211)
Q Consensus 160 ~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~g~ 191 (211)
.+.+++++++|+++.++.=+ ..+...++..+.
T Consensus 25 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 58 (266)
T PRK10976 25 KETLKLLTARGIHFVFATGRHHVDVGQIRDNLEI 58 (266)
T ss_pred HHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCC
Confidence 44455666777777777443 334455555554
No 160
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=28.95 E-value=2.8e+02 Score=21.66 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=35.3
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhH
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSV 182 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v 182 (211)
|+.+++| +..+.+|....+.+.++++++++.|..++++.-..+.
T Consensus 157 p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 200 (216)
T TIGR00960 157 PPLLLAD-EPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL 200 (216)
T ss_pred CCEEEEe-CCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 5677777 5589999999999999999998778887777655543
No 161
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=28.56 E-value=1.7e+02 Score=24.95 Aligned_cols=56 Identities=9% Similarity=0.084 Sum_probs=40.0
Q ss_pred CCcEEEecCCCc--ccchHHH--HHHHHHHHHHHhcCCcEEEE--ecChhHHHHHhhcCCCC
Q psy2736 138 GIPVVVDCSHIY--GADFTAA--KVIEVLCQNFSRRGQPLFFF--NLKPSVVAVFEGVQPKD 193 (211)
Q Consensus 138 ~~~vIlD~s~v~--~iD~t~l--~~L~~~~~~~~~~g~~l~l~--~~~~~v~~~l~~~g~~~ 193 (211)
|+.|++|+..-- .-+..-+ ..+.+-..++++.|..++++ |-.+.+.+.|+++++..
T Consensus 122 phVIVfDlD~TLItd~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~ 183 (297)
T PF05152_consen 122 PHVIVFDLDSTLITDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEG 183 (297)
T ss_pred CcEEEEECCCcccccCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCcc
Confidence 578889997422 2222112 45666778889999888887 56899999999999754
No 162
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=28.52 E-value=2.8e+02 Score=21.47 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=34.7
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecCh
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKP 180 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~ 180 (211)
+|+.+++|= ..+.+|....+.+.++++++.+++..++++.-+.
T Consensus 129 ~p~illlDE-P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 171 (194)
T cd03213 129 NPSLLFLDE-PTSGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171 (194)
T ss_pred CCCEEEEeC-CCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 457777774 4799999999999999999987788887776554
No 163
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=28.29 E-value=2.8e+02 Score=21.47 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=36.3
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhH
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSV 182 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v 182 (211)
+|+.+++| +....+|....+.+.++++++.+.|..++++.-+.+.
T Consensus 144 ~p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~ 188 (205)
T cd03226 144 GKDLLIFD-EPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF 188 (205)
T ss_pred CCCEEEEe-CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 35777777 4689999999999999999998778888887665543
No 164
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=28.17 E-value=2e+02 Score=23.67 Aligned_cols=54 Identities=6% Similarity=0.014 Sum_probs=29.1
Q ss_pred CCcEEEecCCCccc-chHHHHHHHHHHHHHHhcCCcEEEEecC--hhHHHHHhhcCC
Q psy2736 138 GIPVVVDCSHIYGA-DFTAAKVIEVLCQNFSRRGQPLFFFNLK--PSVVAVFEGVQP 191 (211)
Q Consensus 138 ~~~vIlD~s~v~~i-D~t~l~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~g~ 191 (211)
.+.+.+|+.+.-.= |..--..-.+.+++++++|+.++++.-+ ..+...++..+.
T Consensus 7 ~~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~ 63 (271)
T PRK03669 7 PLLIFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGL 63 (271)
T ss_pred CeEEEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCC
Confidence 35566677653221 1211133445566677778887777443 445556666554
No 165
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=28.04 E-value=2.1e+02 Score=22.40 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCcEEEEecC--hhHHHHHhhcC
Q psy2736 160 EVLCQNFSRRGQPLFFFNLK--PSVVAVFEGVQ 190 (211)
Q Consensus 160 ~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~g 190 (211)
.+.+++++++|+++.++.=+ +.+...++..+
T Consensus 22 ~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~ 54 (221)
T TIGR02463 22 APWLTRLQEAGIPVILCTSKTAAEVEYLQKALG 54 (221)
T ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC
Confidence 45555566667776666432 34445555555
No 166
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=27.92 E-value=3.7e+02 Score=22.69 Aligned_cols=54 Identities=13% Similarity=0.064 Sum_probs=24.5
Q ss_pred cccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEE
Q psy2736 120 FPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFF 176 (211)
Q Consensus 120 F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~ 176 (211)
..+.+++.+.+.+..+...+.+.|-.......| .+.+.++++.++++...+.+.
T Consensus 35 ~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~---~~~~~~i~~~Ik~~~~~i~~~ 88 (309)
T TIGR00423 35 VLSLEEILEKVKEAVAKGATEVCIQGGLNPQLD---IEYYEELFRAIKQEFPDVHIH 88 (309)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC---HHHHHHHHHHHHHHCCCceEE
Confidence 445666666665544332233333211122222 344555566665555444444
No 167
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=27.68 E-value=3.7e+02 Score=22.61 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=45.1
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcC-CcEEEEec-ChhHHHHHhhcCC--CC-eEEecChHHHHHH
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRG-QPLFFFNL-KPSVVAVFEGVQP--KD-FVVYYDSRELDHL 206 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g-~~l~l~~~-~~~v~~~l~~~g~--~~-~~i~~~~~ea~~~ 206 (211)
|+.+++| ...+.+|..+...+.++++++.++| ..+.++.- .+++.+..++... .+ .....+.++..+.
T Consensus 155 P~lliLD-EPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 155 PELLILD-EPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred CCEEEEC-CCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 5778888 5599999999999999999999998 56666643 3444444444442 22 2333355554443
No 168
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=27.54 E-value=2.1e+02 Score=23.31 Aligned_cols=32 Identities=9% Similarity=0.062 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCCcEEEEecC--hhHHHHHhhcCC
Q psy2736 160 EVLCQNFSRRGQPLFFFNLK--PSVVAVFEGVQP 191 (211)
Q Consensus 160 ~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~g~ 191 (211)
.+.+++++++|+.+.++.=+ ..+++.++..++
T Consensus 25 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 58 (272)
T PRK15126 25 LSTLARLRERDITLTFATGRHVLEMQHILGALSL 58 (272)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCC
Confidence 34445566677777777433 345556666654
No 169
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=27.48 E-value=3e+02 Score=21.40 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=34.8
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhH
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSV 182 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v 182 (211)
|+.+++| +....+|....+.+.+++++++++|..++++.-+.+.
T Consensus 145 p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 188 (208)
T cd03268 145 PDLLILD-EPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSE 188 (208)
T ss_pred CCEEEEC-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 5667777 5588999999999999999998888888777554443
No 170
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=27.46 E-value=2.2e+02 Score=22.45 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=47.0
Q ss_pred CcEEEecCCCcccchHHHH-HHHHHHHHHHhcCCcEEEEecChhHHHHHhhcCCCCeEE
Q psy2736 139 IPVVVDCSHIYGADFTAAK-VIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVV 196 (211)
Q Consensus 139 ~~vIlD~s~v~~iD~t~l~-~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g~~~~~i 196 (211)
+.=|+...+.-..+..+.. .+..+...+...|.+..++-..+.+++.|++.|+....+
T Consensus 84 R~~IvEvGnLAs~~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~rlgl~~~~L 142 (179)
T PF12261_consen 84 RSQIVEVGNLASFSPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFRRLGLPPTVL 142 (179)
T ss_pred hhheeEeechhhcCcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHcCCCceec
Confidence 6677888887777766555 567778889999999999999999999999999655443
No 171
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=27.41 E-value=1.2e+02 Score=23.42 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHH
Q psy2736 152 DFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVF 186 (211)
Q Consensus 152 D~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l 186 (211)
..++.+.+.++.+.+.+++.++++.|-++++.+.+
T Consensus 28 r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~ 62 (171)
T cd06533 28 RVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKA 62 (171)
T ss_pred ccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHH
Confidence 34577778999999999999999999999888874
No 172
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=27.32 E-value=3.7e+02 Score=24.20 Aligned_cols=84 Identities=12% Similarity=0.059 Sum_probs=51.0
Q ss_pred ccHHHHHHHHHHHhhhcC-CcEEEe-cCCCcccchHHHHHHHHHHHHHHhcCCcEE--EEecC-hhHHHHHhhcCCCCeE
Q psy2736 121 PSVDYVSNLVTKHSIKQG-IPVVVD-CSHIYGADFTAAKVIEVLCQNFSRRGQPLF--FFNLK-PSVVAVFEGVQPKDFV 195 (211)
Q Consensus 121 ~n~~~~~~~l~~~~~~~~-~~vIlD-~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~--l~~~~-~~v~~~l~~~g~~~~~ 195 (211)
++.++.++.+.-...++. +.|+++ +.++..-|--+ +.+.+.++++. ..++++ +.|.+ ++-+++|+.+|. .+.
T Consensus 328 a~~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA-~gii~a~~~~~-~~~pivvRl~Gtn~~~g~~~l~~~~~-~~~ 404 (422)
T PLN00124 328 ASEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIA-SGIVNAAKQVG-LKVPLVVRLEGTNVDQGKRILKESGM-TLI 404 (422)
T ss_pred CCHHHHHHHHHHHhcCCCCcEEEEEecCCccchHHHH-HHHHHHHHhcC-CCCcEEEEcCCCCHHHHHHHHHhCCC-CeE
Confidence 456777777765544332 445554 56787777755 44444444432 334443 33444 445777777775 578
Q ss_pred EecChHHHHHHH
Q psy2736 196 VYYDSRELDHLL 207 (211)
Q Consensus 196 i~~~~~ea~~~l 207 (211)
.+++.+||.+..
T Consensus 405 ~~~~l~~A~~~~ 416 (422)
T PLN00124 405 TAEDLDDAAEKA 416 (422)
T ss_pred EcCCHHHHHHHH
Confidence 999999998753
No 173
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=27.22 E-value=3.1e+02 Score=21.58 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhc
Q psy2736 125 YVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRR 169 (211)
Q Consensus 125 ~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~ 169 (211)
.+++.+++...+..+.|++|-.+.+.-|..-++-|.++.+.....
T Consensus 71 ~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~ 115 (196)
T PF00448_consen 71 IAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPD 115 (196)
T ss_dssp HHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCc
Confidence 344555554433347899999999999999999999988877433
No 174
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=27.08 E-value=4.3e+02 Score=23.13 Aligned_cols=88 Identities=13% Similarity=0.030 Sum_probs=49.0
Q ss_pred Ccceec---ccHHHHHHHHHHHhhhcC-CcEEEecC-CCcccchHHHHHHHHHHHHHHhcC--CcEEEEecC---hhHHH
Q psy2736 115 DRCLIF---PSVDYVSNLVTKHSIKQG-IPVVVDCS-HIYGADFTAAKVIEVLCQNFSRRG--QPLFFFNLK---PSVVA 184 (211)
Q Consensus 115 ~g~L~F---~n~~~~~~~l~~~~~~~~-~~vIlD~s-~v~~iD~t~l~~L~~~~~~~~~~g--~~l~l~~~~---~~v~~ 184 (211)
..+++. .+.+.+.+.++...+++. +.+++... +....|. .++.+.+.. ++.+ .+++.+-.. +..++
T Consensus 284 aNplDlgg~a~~~~~~~al~~l~~dp~vd~ilv~i~gg~~~~~~-va~~i~~a~---~~~~~~kPvvv~~~g~~~~~~~~ 359 (386)
T TIGR01016 284 ANFLDVGGGASAERVREALKLVLSDKSVKVVFINIFGGITRCDL-VAKGLVEAL---KEVGVNVPVVVRLEGTNVEEGKK 359 (386)
T ss_pred CCcEEecCCCCHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHH-HHHHHHHHH---HhcCCCCcEEEEeCCccHHHHHH
Confidence 345555 456778888776665433 45555433 2332322 234444443 3344 667444322 34566
Q ss_pred HHhhcCCCCeEEecChHHHHHHH
Q psy2736 185 VFEGVQPKDFVVYYDSRELDHLL 207 (211)
Q Consensus 185 ~l~~~g~~~~~i~~~~~ea~~~l 207 (211)
.|+..|+ ++.+|++.++|.+..
T Consensus 360 ~L~~~G~-~ip~~~~~~~Av~~~ 381 (386)
T TIGR01016 360 ILAESGL-NIIFATSMEEAAEKA 381 (386)
T ss_pred HHHHcCC-CccccCCHHHHHHHH
Confidence 6777663 467999999988764
No 175
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=27.06 E-value=3.1e+02 Score=21.41 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=35.5
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhH
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSV 182 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v 182 (211)
|+.+++|= ....+|....+.+.++++++.++|..++++.-+.+.
T Consensus 151 p~llllDE-Pt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~ 194 (213)
T cd03235 151 PDLLLLDE-PFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL 194 (213)
T ss_pred CCEEEEeC-CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 57777874 589999999999999999998778888877655543
No 176
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=27.03 E-value=2.1e+02 Score=22.40 Aligned_cols=32 Identities=9% Similarity=-0.021 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCcEEEEec--ChhHHHHHhhcCC
Q psy2736 160 EVLCQNFSRRGQPLFFFNL--KPSVVAVFEGVQP 191 (211)
Q Consensus 160 ~~~~~~~~~~g~~l~l~~~--~~~v~~~l~~~g~ 191 (211)
.+.++++++.|+.+.++.= ...+.+.++..+.
T Consensus 21 ~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~ 54 (225)
T TIGR01482 21 LEAIRKAESVGIPVVLVTGNSVQFARALAKLIGT 54 (225)
T ss_pred HHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCC
Confidence 3455667778888888733 3445556666663
No 177
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=26.96 E-value=3.1e+02 Score=21.68 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=39.4
Q ss_pred hcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecCh--hHHHHHhhc
Q psy2736 136 KQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKP--SVVAVFEGV 189 (211)
Q Consensus 136 ~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~ 189 (211)
.+|+.+++| +....+|......+.++++++.+++..++++.-+. .+.+..++.
T Consensus 160 ~~p~illlD-EP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i 214 (226)
T cd03234 160 WDPKVLILD-EPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRI 214 (226)
T ss_pred hCCCEEEEe-CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEE
Confidence 346777777 45889999999999999999987788887775553 455554443
No 178
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=26.85 E-value=1.5e+02 Score=20.70 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCcEEEEecCh
Q psy2736 159 IEVLCQNFSRRGQPLFFFNLKP 180 (211)
Q Consensus 159 L~~~~~~~~~~g~~l~l~~~~~ 180 (211)
|.+...++++.|++++++++.+
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~ 23 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGS 23 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCC
Confidence 3444556666666666666543
No 179
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=26.79 E-value=2e+02 Score=25.97 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCcEEEEecChh----------HHHHHhhcCCC--CeEEecChHHHHHHHhhh
Q psy2736 159 IEVLCQNFSRRGQPLFFFNLKPS----------VVAVFEGVQPK--DFVVYYDSRELDHLLRSK 210 (211)
Q Consensus 159 L~~~~~~~~~~g~~l~l~~~~~~----------v~~~l~~~g~~--~~~i~~~~~ea~~~l~~~ 210 (211)
...+.+.+++.|+++ .+++.. .++.|++.+++ .+..|++.+||..+++++
T Consensus 76 ~~GvvD~l~~~Gi~v--FGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~ 137 (428)
T COG0151 76 VAGVVDALRAAGIPV--FGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEK 137 (428)
T ss_pred hhhhHHHHHHCCCce--eCcCHHHHHHHhhHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHc
Confidence 445677778888665 355433 46778888854 468899999999998764
No 180
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=26.70 E-value=2.8e+02 Score=20.82 Aligned_cols=51 Identities=6% Similarity=0.135 Sum_probs=38.5
Q ss_pred HHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChh
Q psy2736 130 VTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPS 181 (211)
Q Consensus 130 l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~ 181 (211)
+.+..-.+|+.+++|= ....+|....+.+.++++++.+++..++++.-+.+
T Consensus 93 laral~~~p~illlDE-P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 93 IARALARNARLLILDE-PTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred HHHHHhcCCCEEEEEC-CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3334444567777874 48899999999999999999877888888755544
No 181
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=26.60 E-value=2.9e+02 Score=21.04 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=34.7
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecCh
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKP 180 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~ 180 (211)
+|+.+++| +....+|....+.+.++++++.+++..++++.-+.
T Consensus 122 ~p~llllD-EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 122 DPRVLILD-EPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164 (182)
T ss_pred CCCEEEEC-CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35677777 45889999999999999999987788887775554
No 182
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.50 E-value=2.9e+02 Score=20.89 Aligned_cols=48 Identities=10% Similarity=0.156 Sum_probs=36.7
Q ss_pred HhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChh
Q psy2736 133 HSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPS 181 (211)
Q Consensus 133 ~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~ 181 (211)
.+-.+|+.+++| +....+|....+.+.++++++.++|..++++.-+.+
T Consensus 109 al~~~p~illlD-EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 109 ALLHDPELLILD-EPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred HHHcCCCEEEEe-CCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 333446777787 458899999999999999999887777777755544
No 183
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=25.94 E-value=3.2e+02 Score=21.28 Aligned_cols=43 Identities=16% Similarity=0.117 Sum_probs=34.6
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChh
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPS 181 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~ 181 (211)
|+.+++| +....+|......+.+++++++++|..++++.-..+
T Consensus 156 p~lllLD-EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 198 (214)
T TIGR02673 156 PPLLLAD-EPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198 (214)
T ss_pred CCEEEEe-CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 5667777 558999999999999999999877888877765544
No 184
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=25.85 E-value=1.5e+02 Score=20.35 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEEec--ChhHHHHHhhcCC
Q psy2736 156 AKVIEVLCQNFSRRGQPLFFFNL--KPSVVAVFEGVQP 191 (211)
Q Consensus 156 l~~L~~~~~~~~~~g~~l~l~~~--~~~v~~~l~~~g~ 191 (211)
.....++++.++++|.+++++.- .+.+...+++.+.
T Consensus 26 ~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 26 YPGVKEALKELKEKGIKLALATNKSRREVLELLEELGL 63 (139)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCC
Confidence 34556777778888888777654 3556667777664
No 185
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=25.82 E-value=1.9e+02 Score=21.29 Aligned_cols=35 Identities=6% Similarity=0.005 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCcEEEEecC-----------------hhHHHHHhhcCCC
Q psy2736 158 VIEVLCQNFSRRGQPLFFFNLK-----------------PSVVAVFEGVQPK 192 (211)
Q Consensus 158 ~L~~~~~~~~~~g~~l~l~~~~-----------------~~v~~~l~~~g~~ 192 (211)
...++++.++++|.++.++.=+ +.+.+.++..++.
T Consensus 31 g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 82 (147)
T TIGR01656 31 GAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVA 82 (147)
T ss_pred ChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCc
Confidence 3457788888889887766443 3456677777754
No 186
>PRK10726 hypothetical protein; Provisional
Probab=25.71 E-value=78 Score=22.58 Aligned_cols=13 Identities=15% Similarity=-0.018 Sum_probs=12.3
Q ss_pred ccchhHHHHHHHH
Q psy2736 56 GKSVDATQEILAV 68 (211)
Q Consensus 56 P~~~La~ili~~~ 68 (211)
|.+||.||++...
T Consensus 63 PvsVlvGi~l~~L 75 (105)
T PRK10726 63 PVSVLVGIALHSL 75 (105)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999987
No 187
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=25.59 E-value=5.1e+02 Score=27.28 Aligned_cols=71 Identities=8% Similarity=0.018 Sum_probs=49.2
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhc-CCcEEEEec--ChhHHHHHhhcCC--CC-eEEecChHHHHHHHhh
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRR-GQPLFFFNL--KPSVVAVFEGVQP--KD-FVVYYDSRELDHLLRS 209 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~-g~~l~l~~~--~~~v~~~l~~~g~--~~-~~i~~~~~ea~~~l~~ 209 (211)
|+.+++| +..+.+|+.....+.+.++++.++ |..++++-- .+++.+.+++.-. .+ ..-+.+.+|+.+++++
T Consensus 228 p~vlllD-EPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~ 304 (1394)
T TIGR00956 228 AKIQCWD-NATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEK 304 (1394)
T ss_pred CCEEEEe-CCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHH
Confidence 4556666 458899999999999999999764 666666633 3566666666542 22 3345577888888764
No 188
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=25.54 E-value=2e+02 Score=19.67 Aligned_cols=59 Identities=10% Similarity=0.146 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhhcC
Q psy2736 125 YVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQ 190 (211)
Q Consensus 125 ~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g 190 (211)
.+-+.+.+.+++.+..+++|.++++. .-+.++.++++..|..+.+. =+.=++..++.++
T Consensus 8 ~~v~~~~~~l~~~~~v~v~~~~~l~~------~~~~~lR~~l~~~~~~~~v~-KN~l~~~Al~~~~ 66 (100)
T PF00466_consen 8 EIVEELKELLKKSKYVIVVDYNGLSA------NQLQELRKELRKKGGKFKVV-KNTLMKKALKNTG 66 (100)
T ss_dssp HHHHHHHHHHHCSSEEEEEECTTSCH------HHHHHHHHHHHHHTEEEEEC-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCH------HHHHHHHHHHHhcCcEEEEe-cHHHHHHHHhcCc
Confidence 34556666776656678888887764 55677788888888877665 2445566666664
No 189
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=25.40 E-value=3.2e+02 Score=21.29 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=35.7
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhH
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSV 182 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v 182 (211)
+|+.+++| +....+|....+.+.++++++.++|..++++.-+.+.
T Consensus 145 ~p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 189 (207)
T PRK13539 145 NRPIWILD-EPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG 189 (207)
T ss_pred CCCEEEEe-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 35677777 5589999999999999999988788888887655443
No 190
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=25.06 E-value=2.6e+02 Score=22.42 Aligned_cols=54 Identities=13% Similarity=0.176 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhhcCCcEEEecCCC-----cccchHHHHHHHHHHHHH-HhcCCcEEEEec
Q psy2736 124 DYVSNLVTKHSIKQGIPVVVDCSHI-----YGADFTAAKVIEVLCQNF-SRRGQPLFFFNL 178 (211)
Q Consensus 124 ~~~~~~l~~~~~~~~~~vIlD~s~v-----~~iD~t~l~~L~~~~~~~-~~~g~~l~l~~~ 178 (211)
+.+.+.+++.....++.+||| +-. ...|......+.+.++++ ++.|..+++++-
T Consensus 98 ~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H 157 (239)
T cd01125 98 PEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHH 157 (239)
T ss_pred HHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 344443333323346899999 422 235777666555555554 456887777654
No 191
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=24.68 E-value=3.1e+02 Score=20.69 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=37.7
Q ss_pred hhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhH
Q psy2736 134 SIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSV 182 (211)
Q Consensus 134 ~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v 182 (211)
.-.+|+.+++| +....+|....+.+.+++++++++|..++++.-+.+.
T Consensus 111 l~~~p~~lllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 158 (173)
T cd03246 111 LYGNPRILVLD-EPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET 158 (173)
T ss_pred HhcCCCEEEEE-CCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 33446778887 4588999999999999999998778888887666544
No 192
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=24.63 E-value=4e+02 Score=21.95 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=36.4
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhH
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSV 182 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v 182 (211)
+|+.+++|= ....+|..+.+.+.+++.++++.|..++++.-+...
T Consensus 161 ~p~iLlLDE-Pt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~ 205 (264)
T PRK13546 161 NPDILVIDE-ALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQ 205 (264)
T ss_pred CCCEEEEeC-ccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 467788885 588999999999999999998888888888665443
No 193
>TIGR01897 cas_MJ1666 CRISPR-associated protein, MJ1666 family. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model describes a Cas protein about 400 residues in length, found mostly in the Archaea but also in Aquifex.
Probab=24.47 E-value=1.8e+02 Score=26.11 Aligned_cols=72 Identities=13% Similarity=-0.017 Sum_probs=44.2
Q ss_pred ccCcceecccHHHHHHHHHHHhhhcCCcEEEecCC-CcccchHHHHHHHHHHHHH-HhcCCcEEEEecChhHHH
Q psy2736 113 TPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSH-IYGADFTAAKVIEVLCQNF-SRRGQPLFFFNLKPSVVA 184 (211)
Q Consensus 113 ~~~g~L~F~n~~~~~~~l~~~~~~~~~~vIlD~s~-v~~iD~t~l~~L~~~~~~~-~~~g~~l~l~~~~~~v~~ 184 (211)
+++|.....-..-+.+.++.+..+.+.-|+||.++ ++|+=..+.+++..+...+ .+++.++.+.|-.|-+..
T Consensus 100 ~f~g~~~~~~~~~~~~l~~~l~~~~~~eI~LDiTHGiNy~~~~~~~A~~~l~~~la~~~~v~l~~~NSdP~~~~ 173 (410)
T TIGR01897 100 GFEGKPNDYFSYAYYHLLKILEKDKINEIYLDITHGINYMTVLTLEAIRALLVYLAKEKEVKLELYNSDPYPKG 173 (410)
T ss_pred EEecCHHHHHHHHHHHHHHHhccCCCcEEEEECCCChhhHHHHHHHHHHHHHHHHHhccCceEEEEeCCCCCCC
Confidence 45554333333334444433333334689999975 8998888888888766544 255678888887664443
No 194
>COG1602 Uncharacterized conserved protein [Function unknown]
Probab=24.43 E-value=1.8e+02 Score=25.92 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=40.8
Q ss_pred cEEEecCC----CcccchHH-----HHHHHHHHHHHHhcCCcEEEEec-------------ChhHHHHHhhcCCCCeEEe
Q psy2736 140 PVVVDCSH----IYGADFTA-----AKVIEVLCQNFSRRGQPLFFFNL-------------KPSVVAVFEGVQPKDFVVY 197 (211)
Q Consensus 140 ~vIlD~s~----v~~iD~t~-----l~~L~~~~~~~~~~g~~l~l~~~-------------~~~v~~~l~~~g~~~~~i~ 197 (211)
.+..|... -.|.|.+| --+..+.+.+.+++..-+++-.+ .+.+++.|+ ..-..|
T Consensus 288 ~i~~d~E~~~Gr~~Y~~~gG~YyAARLaVlE~L~~~~Rqa~aiv~REi~p~Y~aPvGvW~VRE~VR~a~~----~~p~~f 363 (402)
T COG1602 288 VISVDSEGYRGRKGYPDTGGAYYAARLAVLEHLSRIGRQASAIVLREIYPGYYAPVGVWVVRENVRNALK----GKPGEF 363 (402)
T ss_pred eEEEecccccCccCCccccchhhHHHHHHHHHHHHhccccceEEEEEecCCcccceeeeehHHHHHHHhh----CCCccc
Confidence 46677764 45678444 12333344455555554554444 445555543 334689
Q ss_pred cChHHHHHHHhhhC
Q psy2736 198 YDSRELDHLLRSKM 211 (211)
Q Consensus 198 ~~~~ea~~~l~~~~ 211 (211)
+|+++|.+++.+||
T Consensus 364 d~l~~al~~~~~kl 377 (402)
T COG1602 364 DTLEEALEFLSDKL 377 (402)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998875
No 195
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=24.33 E-value=2.8e+02 Score=22.99 Aligned_cols=65 Identities=8% Similarity=-0.005 Sum_probs=40.4
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecC----hhHHHHHhhcCCCC--eEEecChHHHHHHHh
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLK----PSVVAVFEGVQPKD--FVVYYDSRELDHLLR 208 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~g~~~--~~i~~~~~ea~~~l~ 208 (211)
-+.|+||+++-.+ |. +.+.+++...+..|... ++.++ ..+.+.|+ .|... ++-.+|.+|+.+..+
T Consensus 41 ~D~v~iD~EHg~~-~~---~~~~~~i~a~~~~g~~~-lVRvp~~~~~~i~r~LD-~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 41 FDWLVLDGEHAPN-DV---STFIPQLMALKGSASAP-VVRVPTNEPVIIKRLLD-IGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred CCEEEEccccCCC-CH---HHHHHHHHHHhhcCCCc-EEECCCCCHHHHHHHhC-CCCCeeeecCcCCHHHHHHHHH
Confidence 3899999998766 43 45566777777777653 33342 23344443 35433 356778888887653
No 196
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.28 E-value=2.8e+02 Score=21.00 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHhhhcCCcEEE-----ecCCCcccchHHHHHHHHHHHHHHh--cCCcEEEEecC
Q psy2736 122 SVDYVSNLVTKHSIKQGIPVVV-----DCSHIYGADFTAAKVIEVLCQNFSR--RGQPLFFFNLK 179 (211)
Q Consensus 122 n~~~~~~~l~~~~~~~~~~vIl-----D~s~v~~iD~t~l~~L~~~~~~~~~--~g~~l~l~~~~ 179 (211)
+...+.+++.+.....++.|+| |+......+ .-.+.+.++++.+++ .+.++++.++.
T Consensus 52 t~~~~~~~l~~~~~~~pd~Vii~~G~ND~~~~~~~~-~~~~~l~~li~~i~~~~~~~~iiv~~~p 115 (191)
T cd01836 52 TSADLLRQLAPLPETRFDVAVISIGVNDVTHLTSIA-RWRKQLAELVDALRAKFPGARVVVTAVP 115 (191)
T ss_pred CHHHHHHHHHhcccCCCCEEEEEecccCcCCCCCHH-HHHHHHHHHHHHHHhhCCCCEEEEECCC
Confidence 3455666666533334567777 544322222 245678888888887 67888887753
No 197
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=24.27 E-value=3.7e+02 Score=21.45 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=36.3
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHH
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVV 183 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~ 183 (211)
|+.+++| +..+.+|....+.+.+++++++++|..++++.-+.+..
T Consensus 160 p~llilD-EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 204 (242)
T PRK11124 160 PQVLLFD-EPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVA 204 (242)
T ss_pred CCEEEEc-CCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 5667777 45889999999999999999988888888886665544
No 198
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=24.25 E-value=3.6e+02 Score=21.23 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=38.1
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHH-HHHhhc
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVV-AVFEGV 189 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~-~~l~~~ 189 (211)
|+.+++| +....+|....+.+.++++++.++|..++++.-+.+.. +..++.
T Consensus 143 p~llllD-EP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i 194 (223)
T TIGR03740 143 PKLLILD-EPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHI 194 (223)
T ss_pred CCEEEEC-CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEE
Confidence 5666666 55889999999999999999987788888876665543 334443
No 199
>PRK04804 minC septum formation inhibitor; Reviewed
Probab=24.22 E-value=3.9e+02 Score=21.62 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHhhhc-----CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEE-EEecChhHHHHHhhcC
Q psy2736 122 SVDYVSNLVTKHSIKQ-----GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLF-FFNLKPSVVAVFEGVQ 190 (211)
Q Consensus 122 n~~~~~~~l~~~~~~~-----~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~-l~~~~~~v~~~l~~~g 190 (211)
..+.+.+.+.+.+++. ..+++||++....-+ .-+..+.+.++++|..+. +.+.+++.....+..+
T Consensus 24 ~~~~l~~~L~~kl~~a~~Ff~~~~vvld~~~~~~~~----~~~~~L~~~l~~~gl~~~~v~~~~~~~~~~a~~~g 94 (221)
T PRK04804 24 DLAAVAAELDEKLAQAPQFFAGAPLVVNLSAIQDGD----IDFVALKELLESRQLIIVGITGAKDKLQNQAKAAG 94 (221)
T ss_pred CHHHHHHHHHHHHHhChhhhCCCEEEEEecCcCCCH----HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHcC
Confidence 4466777777666554 257999999865222 335666677777776543 4455555556666655
No 200
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=24.19 E-value=1.9e+02 Score=26.46 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=43.8
Q ss_pred HHHHHhhhcCCcEEEecCCCcccc-hHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHh
Q psy2736 129 LVTKHSIKQGIPVVVDCSHIYGAD-FTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFE 187 (211)
Q Consensus 129 ~l~~~~~~~~~~vIlD~s~v~~iD-~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~ 187 (211)
++.+++.+.+..+++|=- ...+| .|++....++.+..++.+++++.+--++++.+.|+
T Consensus 517 KLAkllaerpn~~~iDEF-~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~ 575 (593)
T COG2401 517 KLAKLLAERPNVLLIDEF-AAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALR 575 (593)
T ss_pred HHHHHHhcCCCcEEhhhh-hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccC
Confidence 344444444566777755 34454 57888999999999999999999999999988874
No 201
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=24.19 E-value=3.4e+02 Score=21.04 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=36.1
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHH
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVV 183 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~ 183 (211)
+|+.+++| +....+|....+.+.++++++++++..++++.-+.+..
T Consensus 147 ~p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i 192 (204)
T PRK13538 147 RAPLWILD-EPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPV 192 (204)
T ss_pred CCCEEEEe-CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhh
Confidence 35677777 45889999999999999999887788888876554443
No 202
>PRK00339 minC septum formation inhibitor; Reviewed
Probab=24.11 E-value=4.2e+02 Score=21.95 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=41.2
Q ss_pred ccHHHHHHHHHHHhhhcC-----CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCc-EEEEecChhHHHHHhhcCC
Q psy2736 121 PSVDYVSNLVTKHSIKQG-----IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQP-LFFFNLKPSVVAVFEGVQP 191 (211)
Q Consensus 121 ~n~~~~~~~l~~~~~~~~-----~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~-l~l~~~~~~v~~~l~~~g~ 191 (211)
...+.+++.+.+.+++.+ .+++||++....-+.. .-|..+.+.++++|.. +-+.+.+.+.....+..|+
T Consensus 30 ~d~~~l~~~L~~kl~~a~~FF~~~pvvld~~~~~~~~~~--~dl~~L~~~l~~~gl~~vgv~~~~~~~~~~a~~~gl 104 (249)
T PRK00339 30 NDLDRLDRQLAAKVAQAPNFFSNTPLVLALDKLPEGEGE--LDLPGLMRICRRHGLRTLAIRASRIEDIAAAIAADL 104 (249)
T ss_pred CCHHHHHHHHHHHHHhChhhhCCCeEEEEecccccccch--HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHcCC
Confidence 456777777777776543 5799999977522211 2255556666666643 3345556665555555553
No 203
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=24.11 E-value=1e+02 Score=23.91 Aligned_cols=40 Identities=5% Similarity=0.108 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCcEEEEecChhHHHHHhhcCCCCeEEec
Q psy2736 159 IEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYY 198 (211)
Q Consensus 159 L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g~~~~~i~~ 198 (211)
+..+..+++++|.++...+..+..-+.|.+.-.....+-+
T Consensus 118 F~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L~~ 157 (160)
T TIGR00288 118 FLPVINKAKENGKETIVIGAEPGFSTALQNSADIAIILGE 157 (160)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeCCC
Confidence 4557788889999999999777666677666643333433
No 204
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=24.04 E-value=3.3e+02 Score=20.79 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=32.9
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEec
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNL 178 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~ 178 (211)
|+.+++| +....+|....+.+.+++++++++|..++++.-
T Consensus 146 p~llllD-EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH 185 (190)
T TIGR01166 146 PDVLLLD-EPTAGLDPAGREQMLAILRRLRAEGMTVVISTH 185 (190)
T ss_pred CCEEEEc-CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 5667777 558999999999999999999888888777744
No 205
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=23.99 E-value=4.1e+02 Score=22.40 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=38.3
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecCh-hHHHHHhhc
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKP-SVVAVFEGV 189 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~-~v~~~l~~~ 189 (211)
|+.+++| +..+.+|..+...+.+++++++++|.+++++.-.. ++.+..++.
T Consensus 157 P~lllLD-EPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i 208 (306)
T PRK13537 157 PDVLVLD-EPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRL 208 (306)
T ss_pred CCEEEEe-CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 5677777 55899999999999999999988888888874443 344444443
No 206
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=23.73 E-value=4.5e+02 Score=22.42 Aligned_cols=42 Identities=10% Similarity=0.173 Sum_probs=33.5
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhc-CCcEEEEecCh
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRR-GQPLFFFNLKP 180 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~-g~~l~l~~~~~ 180 (211)
|+.+++| +....+|......+.++++++.+. |.+++++.-..
T Consensus 119 p~lllLD-EP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~ 161 (325)
T TIGR01187 119 PKILLLD-EPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ 161 (325)
T ss_pred CCEEEEe-CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 5778888 568999999999999999988664 77877775444
No 207
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=23.61 E-value=1.6e+02 Score=24.40 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHH
Q psy2736 152 DFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVF 186 (211)
Q Consensus 152 D~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l 186 (211)
-.+|.+.+.++++...++|.+++|.|-++++.+.+
T Consensus 87 Rv~G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a 121 (243)
T PRK03692 87 RVAGADLWEALMARAGKEGTPVFLVGGKPEVLAQT 121 (243)
T ss_pred eeChHHHHHHHHHHHHhcCCeEEEECCCHHHHHHH
Confidence 34688899999999999999999999999854443
No 208
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=23.40 E-value=3.5e+02 Score=20.85 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=36.1
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhH
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSV 182 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v 182 (211)
+|+.+++| +....+|....+.+.++++++.++|..++++.-+.+.
T Consensus 152 ~p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 196 (206)
T TIGR03608 152 DPPLILAD-EPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV 196 (206)
T ss_pred CCCEEEEe-CCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 46777777 4588999999999999999998778888887655544
No 209
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=23.26 E-value=3.9e+02 Score=21.38 Aligned_cols=44 Identities=7% Similarity=0.027 Sum_probs=35.1
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhH
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSV 182 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v 182 (211)
|+.+++| +....+|..+.+.+.++++++.++|..++++.-+.+.
T Consensus 163 p~lllLD-EPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~ 206 (250)
T PRK11264 163 PEVILFD-EPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF 206 (250)
T ss_pred CCEEEEe-CCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 5667777 4588999999999999999998878888877555443
No 210
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=23.19 E-value=1.2e+02 Score=21.88 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=6.7
Q ss_pred eEEecChHHHHHHH
Q psy2736 194 FVVYYDSRELDHLL 207 (211)
Q Consensus 194 ~~i~~~~~ea~~~l 207 (211)
+.++++.+||++.|
T Consensus 22 livlpdl~DAiEvl 35 (106)
T PF09895_consen 22 LIVLPDLKDAIEVL 35 (106)
T ss_pred EEEeCCHHHHHHhc
Confidence 44445555554444
No 211
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=23.18 E-value=62 Score=24.53 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=20.3
Q ss_pred CcEEEecCCCcc--c-c-hHHHHHHHHHHHHHHhcCCcE
Q psy2736 139 IPVVVDCSHIYG--A-D-FTAAKVIEVLCQNFSRRGQPL 173 (211)
Q Consensus 139 ~~vIlD~s~v~~--i-D-~t~l~~L~~~~~~~~~~g~~l 173 (211)
+.||||.++|.+ - + .-..+.|...++.++++|.+.
T Consensus 3 r~VVIDG~NVA~~~~~~~~f~~~~i~~~v~~~~~rG~~~ 41 (155)
T PF11977_consen 3 RPVVIDGSNVAYSHGNQKFFSVRGIQIAVEYFKSRGHEV 41 (155)
T ss_dssp --EEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHHTT---
T ss_pred CEEEEeCHHHHhhcCCCCCcCHHHHHHHHHHHHHcCCCe
Confidence 578899988832 1 1 135566677777788888743
No 212
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=23.18 E-value=3.7e+02 Score=21.00 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=34.9
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChh
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPS 181 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~ 181 (211)
|+.+++| +....+|....+.+.++++++.++|..++++.-+.+
T Consensus 155 p~illlD-EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 197 (218)
T cd03266 155 PPVLLLD-EPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ 197 (218)
T ss_pred CCEEEEc-CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5667777 558899999999999999999877888887765544
No 213
>PLN02327 CTP synthase
Probab=23.11 E-value=2e+02 Score=26.98 Aligned_cols=50 Identities=6% Similarity=-0.071 Sum_probs=25.3
Q ss_pred CceEEEEccCcceecccHHHHHHHHHHHhhhcC--CcEEEecCCCcccchHH
Q psy2736 106 GIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQG--IPVVVDCSHIYGADFTA 155 (211)
Q Consensus 106 ~~~i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~--~~vIlD~s~v~~iD~t~ 155 (211)
+++++++++.|-.-=.-+.-|-+.+++.-.+.+ ..+.+..+-|+++..++
T Consensus 139 ~~dv~i~EiGGTVGDiEs~pflEA~rQ~~~~~g~~n~~~iHvt~vp~l~~~g 190 (557)
T PLN02327 139 PADVCVIELGGTVGDIESMPFIEALRQFSFRVGPGNFCLIHVSLVPVLGVVG 190 (557)
T ss_pred CCCEEEEEeCceeecccccHHHHHHHHHHHHhCcCcEEEEEEeeeeeecCCC
Confidence 456777777765422222223344444322221 45667777777776544
No 214
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=22.83 E-value=2.2e+02 Score=22.19 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHH-----hcCCcEEEEecCh---hHHHHHh---hcC------CCCeEEecChHHHHHHHhh
Q psy2736 155 AAKVIEVLCQNFS-----RRGQPLFFFNLKP---SVVAVFE---GVQ------PKDFVVYYDSRELDHLLRS 209 (211)
Q Consensus 155 ~l~~L~~~~~~~~-----~~g~~l~l~~~~~---~v~~~l~---~~g------~~~~~i~~~~~ea~~~l~~ 209 (211)
|..+|.++...+. ..+.++.+.|... ++.+.++ ..| ...+.+.+|.+|+.+.+++
T Consensus 106 G~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 106 GFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLKLIHVVSRPDELIEQVQN 177 (178)
T ss_pred CcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcCcEEEcCCHHHHHHHHHh
Confidence 6677777766553 4677888888753 3333222 233 1235799999999999864
No 215
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=22.80 E-value=3.8e+02 Score=21.04 Aligned_cols=46 Identities=17% Similarity=0.098 Sum_probs=36.9
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHH
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVV 183 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~ 183 (211)
.|+.+++| +....+|....+.+.+++++++++|..++++.-+.+..
T Consensus 167 ~p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~ 212 (224)
T TIGR02324 167 DYPILLLD-EPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVR 212 (224)
T ss_pred CCCEEEEc-CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 35677777 45899999999999999999988888888886665543
No 216
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=22.77 E-value=4.6e+02 Score=21.96 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=33.9
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecCh
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKP 180 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~ 180 (211)
|+.+++| +..+.+|..+...+.+++++++++|..++++.-..
T Consensus 143 p~lllLD-EPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~ 184 (302)
T TIGR01188 143 PDVLFLD-EPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYM 184 (302)
T ss_pred CCEEEEe-CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 5677777 55889999999999999999988888887775544
No 217
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=22.74 E-value=3.2e+02 Score=21.49 Aligned_cols=48 Identities=6% Similarity=-0.067 Sum_probs=37.1
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHH
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVF 186 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l 186 (211)
++.+++|= ....+|......+.++++++++++..++++.-..+..+.+
T Consensus 152 ~~~lllDE-p~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~ 199 (213)
T cd03279 152 LEALFIDE-GFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERI 199 (213)
T ss_pred CCEEEEeC-CcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhh
Confidence 35677874 4689999999999999999988888888887666554433
No 218
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=22.65 E-value=2.8e+02 Score=23.59 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEEe--cChhHHHHHhh
Q psy2736 156 AKVIEVLCQNFSRRGQPLFFFN--LKPSVVAVFEG 188 (211)
Q Consensus 156 l~~L~~~~~~~~~~g~~l~l~~--~~~~v~~~l~~ 188 (211)
-..+.++++.++++|+.+.++. ..+.+.+.|+.
T Consensus 33 ~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~ 67 (320)
T TIGR01686 33 HKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFER 67 (320)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHh
Confidence 3567788888888999888883 34567777877
No 219
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=22.29 E-value=1.3e+02 Score=22.58 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEecChhHHHHHhhcCCC
Q psy2736 157 KVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPK 192 (211)
Q Consensus 157 ~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g~~ 192 (211)
....++++.++++|.++.++.-+......+++.++.
T Consensus 90 pg~~~~L~~L~~~g~~~~i~s~~~~~~~~l~~~~l~ 125 (185)
T TIGR01990 90 PGIKNLLDDLKKNNIKIALASASKNAPTVLEKLGLI 125 (185)
T ss_pred ccHHHHHHHHHHCCCeEEEEeCCccHHHHHHhcCcH
Confidence 344556677778888888876655666778888853
No 220
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=22.28 E-value=3.8e+02 Score=20.80 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=34.5
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChh
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPS 181 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~ 181 (211)
|+.+++| +..+.+|....+.+.++++++.++|..++++.-..+
T Consensus 153 p~llllD-EPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~ 195 (211)
T cd03225 153 PDILLLD-EPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD 195 (211)
T ss_pred CCEEEEc-CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 5667777 558899999999999999999877878777765544
No 221
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.26 E-value=4.6e+02 Score=21.80 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=35.4
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChh
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPS 181 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~ 181 (211)
+|+.+++| +....+|..+.+.|.+++++++++|.+++++.-..+
T Consensus 162 ~p~illLD-EPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~ 205 (288)
T PRK13643 162 EPEVLVLD-EPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD 205 (288)
T ss_pred CCCEEEEE-CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 36777777 458899999999999999999888888888765544
No 222
>KOG1292|consensus
Probab=22.25 E-value=1.2e+02 Score=27.98 Aligned_cols=64 Identities=14% Similarity=0.067 Sum_probs=40.8
Q ss_pred CCcchHHHHHhHhHHHhhhcCCcccccchh-------------hhHHhhh------cCCCccchhhhhhcccchhHHHHH
Q psy2736 5 VDATQEILAVGVCNLASCFFQAYPVSGSIS-------------RSAVQSV------SGVRTPMVGIYTAHGKSVDATQEI 65 (211)
Q Consensus 5 ~d~nqEl~a~G~~N~~~~~~g~~p~~~s~s-------------rs~~n~~------~G~~t~~s~~~~~~P~~~La~ili 65 (211)
...||-+..+|++-+++|+||.-.++...+ |=.++.. .|--++.+++++.+|.++.||+.-
T Consensus 305 ~~inRgi~~eGig~lL~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c 384 (510)
T KOG1292|consen 305 SVLNRGIGWEGIGSLLAGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLC 384 (510)
T ss_pred hhhhhhhhhhhHHHHHHHhhCCCccceeeccceeeEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 456888999999999999999865554332 2222222 123344455555558888888765
Q ss_pred HHH
Q psy2736 66 LAV 68 (211)
Q Consensus 66 ~~~ 68 (211)
+..
T Consensus 385 ~~~ 387 (510)
T KOG1292|consen 385 ILF 387 (510)
T ss_pred HHH
Confidence 544
No 223
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.21 E-value=3.2e+02 Score=19.88 Aligned_cols=51 Identities=12% Similarity=-0.025 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhc--CCcEEEEecChhHHHHHhhcCCCCeEEecChHHHHHHHh
Q psy2736 154 TAAKVIEVLCQNFSRR--GQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLR 208 (211)
Q Consensus 154 t~l~~L~~~~~~~~~~--g~~l~l~~~~~~v~~~l~~~g~~~~~i~~~~~ea~~~l~ 208 (211)
.+.+.+..+.+.++++ +..+..+=++..+++.|+..+. -.++..|+.+.+.
T Consensus 14 ~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~----~~p~~~eaL~~l~ 66 (127)
T cd03412 14 TAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGI----EVDTPEEALAKLA 66 (127)
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCC----CCCCHHHHHHHHH
Confidence 5666677777766554 2356666666566666655541 2345555555443
No 224
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=22.19 E-value=4.4e+02 Score=21.59 Aligned_cols=43 Identities=16% Similarity=0.290 Sum_probs=34.9
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChh
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPS 181 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~ 181 (211)
|+.+++| +....+|....+.+.+++++++++|..++++.-+.+
T Consensus 161 p~llllD-EPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~ 203 (272)
T PRK15056 161 GQVILLD-EPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG 203 (272)
T ss_pred CCEEEEe-CCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 5667777 558999999999999999999887888888866554
No 225
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=22.09 E-value=87 Score=23.45 Aligned_cols=17 Identities=6% Similarity=-0.077 Sum_probs=12.4
Q ss_pred ccchhHHHHHHHHHHHH
Q psy2736 56 GKSVDATQEILAVGVCN 72 (211)
Q Consensus 56 P~~~La~ili~~~~~~t 72 (211)
|.+.+.+++++++|+++
T Consensus 15 ~~~f~~~~~~Ii~W~i~ 31 (132)
T PF04120_consen 15 PWAFVIAVAVIIVWAIS 31 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888775543
No 226
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=22.05 E-value=2.4e+02 Score=24.74 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=34.6
Q ss_pred CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhhcCCCCeEEec-ChHHHHHHHhh
Q psy2736 139 IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYY-DSRELDHLLRS 209 (211)
Q Consensus 139 ~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g~~~~~i~~-~~~ea~~~l~~ 209 (211)
+.+|||- +..+|..+...|.+.+++-.....-+.+++-...+...+ +..-..+.+-+ +.+++.+.|++
T Consensus 143 kVviIDe--ad~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti-~SRc~~i~l~~l~~~~i~~~L~~ 211 (365)
T PRK07471 143 RVVIVDT--ADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTI-RSRCRKLRLRPLAPEDVIDALAA 211 (365)
T ss_pred EEEEEec--hHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHh-hccceEEECCCCCHHHHHHHHHH
Confidence 4566665 778888888888777765433333333333323222221 11212233222 56666666654
No 227
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX. This protein of fatty acid/phospholipid biosynthesis, called PlsX after the member in Streptococcus pneumoniae, is proposed to be a phosphate acyltransferase that partners with PlsY (TIGR00023) in a two-step 1-acylglycerol-3-phosphate biosynthesis pathway alternative to the one-step PlsB (EC 2.3.1.15) pathway.
Probab=21.95 E-value=2.8e+02 Score=23.97 Aligned_cols=48 Identities=10% Similarity=0.170 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHHHHhcC-CcEEEEecChhHHHHHhhcCCCCeEEecCh
Q psy2736 152 DFTAAKVIEVLCQNFSRRG-QPLFFFNLKPSVVAVFEGVQPKDFVVYYDS 200 (211)
Q Consensus 152 D~t~l~~L~~~~~~~~~~g-~~l~l~~~~~~v~~~l~~~g~~~~~i~~~~ 200 (211)
|..--..++...+.+++.+ .++++++-.+.+.+.++..+. .+.|.+..
T Consensus 3 D~~p~~vv~aa~~a~~~~~~~~~iLvGd~~~I~~~l~~~~~-~i~Ii~a~ 51 (322)
T TIGR00182 3 DHAPSEVIDGVLKYASANQDLHIILVGDKDAIEPHLDKLPK-NITIIHAQ 51 (322)
T ss_pred CcChHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHhCCC-CcEEECCC
Confidence 4555556677777566666 789999999999999988752 35555543
No 228
>KOG4132|consensus
Probab=21.93 E-value=3.4e+02 Score=22.49 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=47.5
Q ss_pred CcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHHHHHhhcCCCC--eEEecChHHHHHHHh
Q psy2736 148 IYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKD--FVVYYDSRELDHLLR 208 (211)
Q Consensus 148 v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g~~~--~~i~~~~~ea~~~l~ 208 (211)
+.+..-||+....+........+-.+.++.+.|..++.|+..|.+. ..--++.+.+.+.++
T Consensus 190 ivfFSPsgv~~~lq~f~~~~~s~~~~k~aaIGPtT~kaL~~~g~~~~~vs~~P~pe~L~~~I~ 252 (260)
T KOG4132|consen 190 IVFFSPSGVKSSLQYFGDSNRSGDHLKLAAIGPTTRKALEDLGVKVDVVSPAPDPESLADAIE 252 (260)
T ss_pred EEEECcchHHHHHHHHHHhccchhheeEEEeCcchHHHHHHcCCCcceecCCCCHHHHHHHHH
Confidence 3445667888888888777777888999999999999999999643 345678888777664
No 229
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.87 E-value=3.8e+02 Score=20.64 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=35.0
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChh
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPS 181 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~ 181 (211)
+|+.+++| +....+|....+.+.++++++++.|..++++.-+.+
T Consensus 126 ~p~vlllD-EP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 126 KPSILFLD-EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred CCcEEEEe-CCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 35677777 458899999999999999999887888777755543
No 230
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=21.74 E-value=6.7e+02 Score=23.47 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=42.6
Q ss_pred cccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHH----HHHHHHHHhcCCcEEEEecC---hhHHHHHhhcC--
Q psy2736 120 FPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVI----EVLCQNFSRRGQPLFFFNLK---PSVVAVFEGVQ-- 190 (211)
Q Consensus 120 F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L----~~~~~~~~~~g~~l~l~~~~---~~v~~~l~~~g-- 190 (211)
+.+.+++++.+.+..++ ++++++|+..-.-...-.++.. .++.++++ +..++-.++. ++..+.+++.+
T Consensus 457 i~s~~~l~~~l~~a~~~-gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~ 533 (571)
T PRK00293 457 IKTVAELDQALAEAKGK-GKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVL 533 (571)
T ss_pred cCCHHHHHHHHHHHHhc-CCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCC
Confidence 45677888887765433 4789999986555554444322 33444443 4455555654 23455666665
Q ss_pred -CCCeEEec
Q psy2736 191 -PKDFVVYY 198 (211)
Q Consensus 191 -~~~~~i~~ 198 (211)
.+-+.+|+
T Consensus 534 g~Pt~~~~~ 542 (571)
T PRK00293 534 GLPTILFFD 542 (571)
T ss_pred CCCEEEEEC
Confidence 33344554
No 231
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=21.73 E-value=3e+02 Score=22.20 Aligned_cols=31 Identities=3% Similarity=0.074 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCcEEEEecC--hhHHHHHhhcC
Q psy2736 160 EVLCQNFSRRGQPLFFFNLK--PSVVAVFEGVQ 190 (211)
Q Consensus 160 ~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~~g 190 (211)
.+.+++++++|+.+.++.=+ ..+...++..+
T Consensus 26 ~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~ 58 (272)
T PRK10530 26 LEALARAREAGYKVIIVTGRHHVAIHPFYQALA 58 (272)
T ss_pred HHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcC
Confidence 34455666677777777443 33445555554
No 232
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=21.71 E-value=2e+02 Score=24.55 Aligned_cols=51 Identities=8% Similarity=-0.009 Sum_probs=34.5
Q ss_pred EEEecCCCcccchHHHHHHHHHHHHHHhc----CCcEEEEe-cC----hhHHHHH-hhcCC
Q psy2736 141 VVVDCSHIYGADFTAAKVIEVLCQNFSRR----GQPLFFFN-LK----PSVVAVF-EGVQP 191 (211)
Q Consensus 141 vIlD~s~v~~iD~t~l~~L~~~~~~~~~~----g~~l~l~~-~~----~~v~~~l-~~~g~ 191 (211)
+++|+.+|-+-....+..-.+.++.++.+ |+++.|.. -. .+..+.| ++.|.
T Consensus 3 ~ifD~DGvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~ 63 (321)
T TIGR01456 3 FAFDIDGVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGV 63 (321)
T ss_pred EEEeCcCceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCC
Confidence 68888888887777777777777888877 87766643 21 2334444 67773
No 233
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=21.65 E-value=2.3e+02 Score=23.30 Aligned_cols=84 Identities=10% Similarity=0.086 Sum_probs=63.4
Q ss_pred EEEEccCcceecccHHHHHHHHHHHhhh----------------------cCCcEEEecCCCcccchHHH--HHHHHHHH
Q psy2736 109 YLLLTPDRCLIFPSVDYVSNLVTKHSIK----------------------QGIPVVVDCSHIYGADFTAA--KVIEVLCQ 164 (211)
Q Consensus 109 i~v~~~~g~L~F~n~~~~~~~l~~~~~~----------------------~~~~vIlD~s~v~~iD~t~l--~~L~~~~~ 164 (211)
..++.+...-...+.+..++.+.++-+. ++..|=||.+-+..++.... ..+..+.+
T Consensus 121 ~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~ 200 (256)
T COG2200 121 RLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVA 200 (256)
T ss_pred eEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHH
Confidence 4677777776666666666666655432 13678899999999887644 45888888
Q ss_pred HHHhcCCcEEEEec-ChhHHHHHhhcCCC
Q psy2736 165 NFSRRGQPLFFFNL-KPSVVAVFEGVQPK 192 (211)
Q Consensus 165 ~~~~~g~~l~l~~~-~~~v~~~l~~~g~~ 192 (211)
..++.|.+++.-++ +++-.+.|+..|.+
T Consensus 201 la~~l~~~vvaEGVEt~~ql~~L~~~G~~ 229 (256)
T COG2200 201 LAHKLGLTVVAEGVETEEQLDLLRELGCD 229 (256)
T ss_pred HHHHCCCEEEEeecCCHHHHHHHHHcCCC
Confidence 89999999999999 57888999999943
No 234
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=21.62 E-value=6.4e+02 Score=24.04 Aligned_cols=82 Identities=7% Similarity=-0.119 Sum_probs=47.9
Q ss_pred ecccHHHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCC-cEEEEecChhHHHHHhhcCCCCe-EE
Q psy2736 119 IFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQ-PLFFFNLKPSVVAVFEGVQPKDF-VV 196 (211)
Q Consensus 119 ~F~n~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~-~l~l~~~~~~v~~~l~~~g~~~~-~i 196 (211)
-|.+.+..-+... +...+.+||--+.-.|-+. -..+.+.+++.|. .++++|-+++..+ ++..|+++| +.
T Consensus 531 ~~~~~~~~~~a~~---~sga~i~viCssD~~Y~~~-----a~~~~~al~~ag~~~v~lAG~p~~~~~-~~~aGvd~fi~~ 601 (619)
T TIGR00642 531 GGTTAEIVVEAFK---KAGAQVAVLCSSDKVYAQQ-----GLEVAKALKAAGAKALYLAGAFKEFGD-DAAEAIDGRLFM 601 (619)
T ss_pred CCCCHHHHHHHHH---hcCCCEEEEeCCCcchHHH-----HHHHHHHHHhCCCCEEEEeCCCcchhh-HHhcCCcceeEc
Confidence 4466655444443 2223556665554444443 3566677766664 7999999888555 899997776 44
Q ss_pred ecChHHHHHHHhh
Q psy2736 197 YYDSRELDHLLRS 209 (211)
Q Consensus 197 ~~~~~ea~~~l~~ 209 (211)
--+.-+.++.+.+
T Consensus 602 g~d~~~~L~~~~~ 614 (619)
T TIGR00642 602 KMNVVDTLSSTLD 614 (619)
T ss_pred CCcHHHHHHHHHH
Confidence 3344444444333
No 235
>PRK03511 minC septum formation inhibitor; Reviewed
Probab=21.61 E-value=2.7e+02 Score=22.75 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=42.9
Q ss_pred EEEEccCcceecccHHHHHHHHHHHhhhcC-----CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEE-EEecC-hh
Q psy2736 109 YLLLTPDRCLIFPSVDYVSNLVTKHSIKQG-----IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLF-FFNLK-PS 181 (211)
Q Consensus 109 i~v~~~~g~L~F~n~~~~~~~l~~~~~~~~-----~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~-l~~~~-~~ 181 (211)
..++.++. ..-+.+++.+.+.+++.+ .++++|++.+.. + .-+..+.+.++++|..++ +.+.+ +.
T Consensus 15 l~vl~l~~----~~~~~l~~~L~~ki~~a~~FF~~apvvld~~~l~~-~----~~~~~L~~~l~~~gl~~vgv~~~~~~~ 85 (228)
T PRK03511 15 LSVVHLHD----AEPEVIRQALEDKIAQAPAFLKNAPVVINVSALED-P----VNWSALHKAVSSTGLRVVGVSGCKDAQ 85 (228)
T ss_pred EEEEEcCC----CCHHHHHHHHHHHHHhChHHhCCCeEEEEeccCCC-h----HHHHHHHHHHHHCCCEEEEEEcCChHH
Confidence 45555555 355667777777776543 579999999652 1 235566666677774332 33333 33
Q ss_pred HHHHHhhcC
Q psy2736 182 VVAVFEGVQ 190 (211)
Q Consensus 182 v~~~l~~~g 190 (211)
..+.....|
T Consensus 86 ~~~~~~~~g 94 (228)
T PRK03511 86 LKAEIARAG 94 (228)
T ss_pred HHHHHHhcC
Confidence 455555555
No 236
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=21.37 E-value=3.3e+02 Score=24.13 Aligned_cols=89 Identities=11% Similarity=0.063 Sum_probs=43.7
Q ss_pred eecccHHH-----HHHHHHHHhhhcC-CcEEEecCC-----CcccchHHHHHHHHHHHHHHhcCCcEEEEecC---hhHH
Q psy2736 118 LIFPSVDY-----VSNLVTKHSIKQG-IPVVVDCSH-----IYGADFTAAKVIEVLCQNFSRRGQPLFFFNLK---PSVV 183 (211)
Q Consensus 118 L~F~n~~~-----~~~~l~~~~~~~~-~~vIlD~s~-----v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~---~~v~ 183 (211)
|+|+.... +++.+.++.++.. ..+..-+|+ ..|+..--.+...++.+.+...+..+++||.. +.+.
T Consensus 287 L~~G~R~~~~d~ly~~El~~~~~~~~~~~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~~M~~~V~ 366 (406)
T cd06202 287 LFFGCRNSTIDDIYKEETEEAKNKGVLTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGDVTMAEDVS 366 (406)
T ss_pred EEEcCCCCCcccchHHHHHHHHHcCCCceEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCCchHHHHH
Confidence 55554432 5666666554332 224444553 22443322223334444455678899999964 3334
Q ss_pred HHHhhcCCCCeEEecChHHHHHHHh
Q psy2736 184 AVFEGVQPKDFVVYYDSRELDHLLR 208 (211)
Q Consensus 184 ~~l~~~g~~~~~i~~~~~ea~~~l~ 208 (211)
+.|...=.. .---+.+||.++++
T Consensus 367 ~~L~~i~~~--~~~~s~~~A~~~~~ 389 (406)
T cd06202 367 QTIQRILAE--HGNMSAEEAEEFIL 389 (406)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHH
Confidence 444322100 01125677777764
No 237
>PF02681 DUF212: Divergent PAP2 family; InterPro: IPR003832 This family is related to the acid phosphatase/vanadium-dependent haloperoxidases; members of this group are uncharacterised.
Probab=21.16 E-value=30 Score=26.24 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=10.5
Q ss_pred CCcccccchhhhHHhhhc
Q psy2736 25 QAYPVSGSISRSAVQSVS 42 (211)
Q Consensus 25 g~~p~~~s~srs~~n~~~ 42 (211)
||||.+.|=.=|++....
T Consensus 41 GGMPSSHSA~V~aLat~i 58 (141)
T PF02681_consen 41 GGMPSSHSATVSALATAI 58 (141)
T ss_pred CCCCchHHHHHHHHHHHH
Confidence 667777665555544443
No 238
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=21.15 E-value=3.9e+02 Score=23.09 Aligned_cols=64 Identities=8% Similarity=-0.017 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhhcCCcEEEecCCCcccc-hHHHHHHHHHHHHHH---hcCCcEEEEecChhHHHHH
Q psy2736 123 VDYVSNLVTKHSIKQGIPVVVDCSHIYGAD-FTAAKVIEVLCQNFS---RRGQPLFFFNLKPSVVAVF 186 (211)
Q Consensus 123 ~~~~~~~l~~~~~~~~~~vIlD~s~v~~iD-~t~l~~L~~~~~~~~---~~g~~l~l~~~~~~v~~~l 186 (211)
...+.+.+.+...+..+.+||=+..++.+. ..+-+.|..+.+... ..+..+++++....+.+.+
T Consensus 122 ~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l 189 (394)
T PRK00411 122 FDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYIL 189 (394)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhc
Confidence 445555555555444456777777777764 223344444444333 2244466666555554443
No 239
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=21.09 E-value=3.2e+02 Score=21.31 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=23.5
Q ss_pred CcEEEecCCCcccchHHHHHHHHHHHHHHhcCC
Q psy2736 139 IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQ 171 (211)
Q Consensus 139 ~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~ 171 (211)
.+++||++.-.. .......+..+++++++.|.
T Consensus 92 ~~~~lD~E~~~~-~~~~~~~~~~F~~~v~~~g~ 123 (192)
T cd06522 92 TVMVADMEDSSS-SGNATANVNAFWQTMKAAGY 123 (192)
T ss_pred CceEEEeecCCC-cchHHHHHHHHHHHHHHcCC
Confidence 367899987554 33455677888899998886
No 240
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=21.09 E-value=1.4e+02 Score=22.56 Aligned_cols=35 Identities=9% Similarity=0.085 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCcEEEEecChhHHHHHhhcCCC
Q psy2736 158 VIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPK 192 (211)
Q Consensus 158 ~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g~~ 192 (211)
...++++.+++.|.++.++.-++.+...+++.++.
T Consensus 92 g~~~~l~~l~~~g~~i~i~S~~~~~~~~l~~~~l~ 126 (185)
T TIGR02009 92 GIENFLKRLKKKGIAVGLGSSSKNADRILAKLGLT 126 (185)
T ss_pred CHHHHHHHHHHcCCeEEEEeCchhHHHHHHHcChH
Confidence 34555677777788888877667778888888853
No 241
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=20.89 E-value=4.3e+02 Score=20.91 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=35.0
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhH
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSV 182 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v 182 (211)
|+.+++| +..+.+|......+.++++++.++|..++++.-+.+.
T Consensus 162 p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 205 (236)
T cd03219 162 PKLLLLD-EPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV 205 (236)
T ss_pred CCEEEEc-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 5667776 5588999999999999999998778888777655544
No 242
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=20.85 E-value=4.4e+02 Score=21.03 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=38.9
Q ss_pred ceecccHHHHHHHHHHHhhh-----------cCCcEEEecCCCcccch--HHHHHHHHHHHHHHhcCCcEEEEe
Q psy2736 117 CLIFPSVDYVSNLVTKHSIK-----------QGIPVVVDCSHIYGADF--TAAKVIEVLCQNFSRRGQPLFFFN 177 (211)
Q Consensus 117 ~L~F~n~~~~~~~l~~~~~~-----------~~~~vIlD~s~v~~iD~--t~l~~L~~~~~~~~~~g~~l~l~~ 177 (211)
...|.+++.|.+.+.+...+ ..+.++||= +..+.. ...+.|-.+++.+.++|.+++++.
T Consensus 66 ~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDD--i~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 66 RVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDD--IQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp -EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEET--GGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEec--chhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 35566666666655544322 135677764 344433 347899999999999999999987
No 243
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=20.81 E-value=1.7e+02 Score=20.20 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=27.9
Q ss_pred cCCcEEEE-ecChhHHHHHhhcCCCCeEEe--cChHHHHHHH
Q psy2736 169 RGQPLFFF-NLKPSVVAVFEGVQPKDFVVY--YDSRELDHLL 207 (211)
Q Consensus 169 ~g~~l~l~-~~~~~v~~~l~~~g~~~~~i~--~~~~ea~~~l 207 (211)
.+.+++++ ++-+.....|+..|+..+... .+.+|+++.+
T Consensus 60 ~~~~vvi~~~iG~~a~~~L~~~GI~v~~~~~~~~v~eal~~~ 101 (102)
T cd00853 60 EDCAILYCAAIGGPAAARLVRAGIHPIKVPEGEPIAELLEEL 101 (102)
T ss_pred CCCcEEEEhhcChhHHHHHHHcCCEEEEcCCCCcHHHHHHhh
Confidence 47777777 678888999999996665444 3567776654
No 244
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=20.75 E-value=4.8e+02 Score=24.83 Aligned_cols=101 Identities=8% Similarity=0.029 Sum_probs=61.5
Q ss_pred CceEEEEccCcc-eecccHHH------------HHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhc--C
Q psy2736 106 GIEYLLLTPDRC-LIFPSVDY------------VSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRR--G 170 (211)
Q Consensus 106 ~~~i~v~~~~g~-L~F~n~~~------------~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~--g 170 (211)
|.++.|-...|. .||+.-.. ....+.+.+.+ .+.|++-...-+.+|+-|.. ..+.+-+... +
T Consensus 293 GDQVvIke~~~k~~fyGG~s~~~ekrTRvRaRvis~al~d~i~e-~d~VfImGHk~pDmDalGsA--ig~~~~A~~~~~~ 369 (655)
T COG3887 293 GDQVVIKENNGKVRFYGGKSNPMEKRTRVRARVISTALSDIIKE-SDNVFIMGHKFPDMDALGSA--IGMQKFASMNNKE 369 (655)
T ss_pred CceEEEEcCCCceeeeCCCcchhHHhHHHHHHHHHHHHHHHHhh-cCcEEEEccCCCChHHHHHH--HHHHHHHHhcccc
Confidence 556666656665 45554321 22233333333 36788888888888876544 2233322222 3
Q ss_pred CcEEEE--ecChhHHHHHhhcCC--CCeEEecChHHHHHHHhh
Q psy2736 171 QPLFFF--NLKPSVVAVFEGVQP--KDFVVYYDSRELDHLLRS 209 (211)
Q Consensus 171 ~~l~l~--~~~~~v~~~l~~~g~--~~~~i~~~~~ea~~~l~~ 209 (211)
.-+++= .++|++.+.+....- ..+..|-+.++|.+...+
T Consensus 370 a~~v~dp~~~~pdveRai~~i~~~~e~~~~fit~~~A~~l~t~ 412 (655)
T COG3887 370 AFAVLDPEDMSPDVERAINEIEKNSEGKTRFITPSDAMELSTE 412 (655)
T ss_pred cEEEECccccChhHHHHHHHHHhcchhhheeccHHHHhhccCC
Confidence 344444 578999999988873 668888899998876544
No 245
>PRK10908 cell division protein FtsE; Provisional
Probab=20.73 E-value=4.2e+02 Score=20.78 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=35.5
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHH
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVV 183 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~ 183 (211)
|+.+++| +....+|....+.+.++++++++.+..++++.-..+..
T Consensus 156 p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 200 (222)
T PRK10908 156 PAVLLAD-EPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLI 200 (222)
T ss_pred CCEEEEe-CCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 5667777 55899999999999999999987788887776655443
No 246
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=20.72 E-value=4.6e+02 Score=21.18 Aligned_cols=51 Identities=12% Similarity=0.063 Sum_probs=38.3
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHH-HHHhhc
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVV-AVFEGV 189 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~-~~l~~~ 189 (211)
|+.+++| +....+|....+.+.+++++++++|..++++.-+.+.. +..++.
T Consensus 156 p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i 207 (256)
T TIGR03873 156 PKLLLLD-EPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHV 207 (256)
T ss_pred CCEEEEc-CccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 5677777 45888999999999999999987788888876655544 334433
No 247
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=20.69 E-value=4.2e+02 Score=20.70 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=34.5
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChh
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPS 181 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~ 181 (211)
|+.+++| +....+|....+.+.++++++.+++..++++.-..+
T Consensus 151 p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 193 (222)
T cd03224 151 PKLLLLD-EPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR 193 (222)
T ss_pred CCEEEEC-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4556666 558999999999999999999877888888765554
No 248
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=20.64 E-value=5.1e+02 Score=21.69 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=35.0
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChh
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPS 181 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~ 181 (211)
|+.+++| +....+|..+.+.+.++++++.++|..++++.-..+
T Consensus 154 p~lllLD-EPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~ 196 (303)
T TIGR01288 154 PQLLILD-EPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 196 (303)
T ss_pred CCEEEEe-CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 5677777 558899999999999999999888888888765544
No 249
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=20.63 E-value=3.2e+02 Score=25.79 Aligned_cols=88 Identities=11% Similarity=-0.004 Sum_probs=49.2
Q ss_pred eecccHH-----HHHHHHHHHhhhcC-CcEEEecCCC----cccchHHHHHHHHHHHHHHhcCCcEEEEecC----hhHH
Q psy2736 118 LIFPSVD-----YVSNLVTKHSIKQG-IPVVVDCSHI----YGADFTAAKVIEVLCQNFSRRGQPLFFFNLK----PSVV 183 (211)
Q Consensus 118 L~F~n~~-----~~~~~l~~~~~~~~-~~vIlD~s~v----~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~----~~v~ 183 (211)
|||++-. .++++++++..+.. ..+...+|+- .|+..--.+.-.++.+.+ ..|..+++||-. ++|.
T Consensus 486 LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l-~~ga~~YVCG~~~~M~~~V~ 564 (600)
T PRK10953 486 LFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEKIYVQDKLREQGAELWRWI-NDGAHIYVCGDANRMAKDVE 564 (600)
T ss_pred EEeeccCCccchhHHHHHHHHHHcCCcceEEEEECCCCCCCCcHHHHHHHHHHHHHHHH-HCCcEEEEECCCccchHHHH
Confidence 7777654 36777777765433 3455666643 266553333344455555 468899999864 4555
Q ss_pred HHHhhcCCCCeEEecChHHHHHHHh
Q psy2736 184 AVFEGVQPKDFVVYYDSRELDHLLR 208 (211)
Q Consensus 184 ~~l~~~g~~~~~i~~~~~ea~~~l~ 208 (211)
+.|...=-. +---+.+||.++++
T Consensus 565 ~~L~~i~~~--~g~~~~e~A~~~l~ 587 (600)
T PRK10953 565 QALLEVIAE--FGGMDTEAADEFLS 587 (600)
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHH
Confidence 555332100 11125677777764
No 250
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=20.58 E-value=4.2e+02 Score=20.67 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=35.5
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHh-cCCcEEEEecChhHH
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSR-RGQPLFFFNLKPSVV 183 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~-~g~~l~l~~~~~~v~ 183 (211)
|+.+++| +....+|....+.+.++++++.+ .|..++++.-..+..
T Consensus 159 p~lllLD-EP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~ 204 (218)
T cd03255 159 PKIILAD-EPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA 204 (218)
T ss_pred CCEEEEc-CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH
Confidence 5667777 55899999999999999999977 588888876665443
No 251
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.38 E-value=4.7e+02 Score=21.54 Aligned_cols=46 Identities=7% Similarity=0.091 Sum_probs=35.8
Q ss_pred cCCcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecChhHH
Q psy2736 137 QGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVV 183 (211)
Q Consensus 137 ~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~~v~ 183 (211)
+|+.+++| +....+|......+.++++++++.|..++++.-..+..
T Consensus 154 ~p~lllLD-EPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~ 199 (274)
T PRK13644 154 EPECLIFD-EVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL 199 (274)
T ss_pred CCCEEEEe-CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 35667777 55889999999999999999887788888876555443
No 252
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=20.34 E-value=3.7e+02 Score=19.99 Aligned_cols=26 Identities=19% Similarity=0.006 Sum_probs=18.0
Q ss_pred ChhHHHHHhhcCCCCeEEecChHHHHHHH
Q psy2736 179 KPSVVAVFEGVQPKDFVVYYDSRELDHLL 207 (211)
Q Consensus 179 ~~~v~~~l~~~g~~~~~i~~~~~ea~~~l 207 (211)
.+-....|++.| ....++.+|+.+..
T Consensus 110 ~~~~~a~~~~aG---v~~v~~~~el~~~~ 135 (138)
T PF13607_consen 110 DAVYDAALRQAG---VVRVDDLDELLDAA 135 (138)
T ss_dssp HHHHHHHHHHCT---EEEESSHHHHHHHH
T ss_pred HHHHHHHHHHcC---ceEECCHHHHHHHH
Confidence 345566677777 66778888887764
No 253
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=20.28 E-value=2.5e+02 Score=21.50 Aligned_cols=96 Identities=16% Similarity=0.125 Sum_probs=44.4
Q ss_pred eEEEEccCcceecccHHHHHHHHHHHhhh---cC-CcEEEecCCCcccchHHHHHHHHHHHHHHhcCCcEEEEecCh-hH
Q psy2736 108 EYLLLTPDRCLIFPSVDYVSNLVTKHSIK---QG-IPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKP-SV 182 (211)
Q Consensus 108 ~i~v~~~~g~L~F~n~~~~~~~l~~~~~~---~~-~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g~~l~l~~~~~-~v 182 (211)
++..+..++. -...+.+++.+...... .. +.+||| .+..++..+...|.+.+++..+ +..++++.-++ .+
T Consensus 65 d~~~~~~~~~--~~~~~~i~~i~~~~~~~~~~~~~kviiid--e~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~l 139 (188)
T TIGR00678 65 DLHRLEPEGQ--SIKVDQVRELVEFLSRTPQESGRRVVIIE--DAERMNEAAANALLKTLEEPPP-NTLFILITPSPEKL 139 (188)
T ss_pred cEEEeccccC--cCCHHHHHHHHHHHccCcccCCeEEEEEe--chhhhCHHHHHHHHHHhcCCCC-CeEEEEEECChHhC
Confidence 4445555543 12456665544433221 12 445555 4677777777777766665333 33344432222 22
Q ss_pred HHHHhhcCCCCeEEe-cChHHHHHHHhh
Q psy2736 183 VAVFEGVQPKDFVVY-YDSRELDHLLRS 209 (211)
Q Consensus 183 ~~~l~~~g~~~~~i~-~~~~ea~~~l~~ 209 (211)
...++.-. ..+.+- .+.+|..+.|++
T Consensus 140 ~~~i~sr~-~~~~~~~~~~~~~~~~l~~ 166 (188)
T TIGR00678 140 LPTIRSRC-QVLPFPPLSEEALLQWLIR 166 (188)
T ss_pred hHHHHhhc-EEeeCCCCCHHHHHHHHHH
Confidence 22222211 112221 256677766654
No 254
>PF07541 EIF_2_alpha: Eukaryotic translation initiation factor 2 alpha subunit; InterPro: IPR011488 In Eukaryota and Archaea, translation initiation factor 2 (eIF2/aIF2), which contains three subunits (alpha, beta and gamma), is pivotal for binding of charged initiator tRNA to the small ribosomal subunit. This entry represents the alpha subunit of both eukaryota and archaeal translation initiator factor 2.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0005850 eukaryotic translation initiation factor 2 complex; PDB: 2QN6_B 3CW2_C 2AHO_B 3QSY_B 3V11_B 2QMU_B 1YZ7_A 1YZ6_A 3AEV_A 1KL9_A ....
Probab=20.17 E-value=3.3e+02 Score=19.57 Aligned_cols=55 Identities=5% Similarity=0.036 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhcCCcEEEecCCCcccchHHHHHHHHHHHHHHhcC-----CcEEEEecC
Q psy2736 124 DYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRG-----QPLFFFNLK 179 (211)
Q Consensus 124 ~~~~~~l~~~~~~~~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~g-----~~l~l~~~~ 179 (211)
+.+.+.+.+.+..++-.|--|+. ++...+-|++.+++.++...+.+ +++.+.+.+
T Consensus 44 ~~L~~~i~~~i~~~~vkI~~~ie-l~c~~~dGIe~IK~aL~~~~~~~~~~~~v~I~~igaP 103 (114)
T PF07541_consen 44 EALLEIIKERIKPQPVKIRADIE-LTCFAPDGIEAIKKALRAAEEASTEDVPVKIKLIGAP 103 (114)
T ss_dssp HHHHHHHHHHCCHT-EEEEEEEE-EEE-STTHHHHHHHHHHHHHHCCCTTCCEEEEEECTT
T ss_pred HHHHHHHHHhCcCCcEEEEEEEE-EEeCCCCHHHHHHHHHHHHHhcCCCCCeEEEEEECCC
Confidence 33444444444322222333333 55677889999999999888766 556655543
No 255
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=20.17 E-value=98 Score=18.84 Aligned_cols=21 Identities=10% Similarity=-0.160 Sum_probs=14.4
Q ss_pred hhhcccchhHHHHHHHHHHHH
Q psy2736 52 YTAHGKSVDATQEILAVGVCN 72 (211)
Q Consensus 52 ~~~~P~~~La~ili~~~~~~t 72 (211)
+.-+|+-+.|.++++++|++.
T Consensus 12 i~~lP~iv~AilIl~vG~~va 32 (53)
T PF05552_consen 12 IAYLPNIVGAILILIVGWWVA 32 (53)
T ss_dssp -GGHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333499888888888885443
No 256
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.15 E-value=4.3e+02 Score=20.61 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=34.4
Q ss_pred CCcEEEecCCCcccchHHHHHHHHHHHHHHhc-CCcEEEEecChhH
Q psy2736 138 GIPVVVDCSHIYGADFTAAKVIEVLCQNFSRR-GQPLFFFNLKPSV 182 (211)
Q Consensus 138 ~~~vIlD~s~v~~iD~t~l~~L~~~~~~~~~~-g~~l~l~~~~~~v 182 (211)
|+.+++|= ....+|....+.+.++++++.++ |..++++.-..+.
T Consensus 150 p~llllDE-Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 194 (214)
T cd03297 150 PELLLLDE-PFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE 194 (214)
T ss_pred CCEEEEcC-CcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHH
Confidence 56777774 68999999999999999998765 7777777555443
No 257
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=20.08 E-value=1.7e+02 Score=17.61 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=17.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcc
Q psy2736 56 GKSVDATQEILAVGVCNLASCFFQA 80 (211)
Q Consensus 56 P~~~La~ili~~~~~~t~~~~~~~~ 80 (211)
|.++++.++++...++++++-++..
T Consensus 16 k~a~~gl~il~~~vl~ai~~p~~~p 40 (56)
T PF12911_consen 16 KLAVIGLIILLILVLLAIFAPFISP 40 (56)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7777777777777777777665543
Done!