RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2736
(211 letters)
>gnl|CDD|132913 cd07042, STAS_SulP_like_sulfate_transporter, Sulphate Transporter
and Anti-Sigma factor antagonist domain of SulP-like
sulfate transporters, plays a role in the function and
regulation of the transport activity, proposed general
NTP binding function. The SulP family is a large and
diverse family of anion transporters, with members from
eubacteria, plants, fungi, and mammals. They contain 10
to 14 transmembrane helices which form the catalytic
core of the protein and a C-terminal extension, the STAS
(Sulphate Transporter and AntiSigma factor antagonist)
domain which plays a role in the function and regulation
of the transport activity. The STAS domain is found in
the C-terminal region of sulphate transporters and
bacterial anti-sigma factor antagonists. It has been
suggested that this domain may have a general NTP
binding function.
Length = 107
Score = 60.3 bits (147), Expect = 3e-12
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 101 PMSRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIP--VVVDCSHIYGADFTAAKV 158
P++ L+ D L F + +Y + + + + V++D S + D TAA+
Sbjct: 2 PLAEEPPGVLIYRIDGPLFFGNAEYFKDRLLRLVDEDPPLKVVILDLSAVNFIDSTAAEA 61
Query: 159 IEVLCQNFSRRGQPLFFFNLKPSVVAVFE 187
+E L ++ +RG L+ L P V + E
Sbjct: 62 LEELVKDLRKRGVELYLAGLNPQVRELLE 90
>gnl|CDD|216188 pfam00916, Sulfate_transp, Sulfate transporter family. Mutations
in human SLC26A2 lead to several human diseases.
Length = 279
Score = 63.0 bits (154), Expect = 5e-12
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 1 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTA 54
G +D+ +E++A G+ N+ S F YP +GS SRSAV +G +T + GI A
Sbjct: 174 KGYKIDSNKELVAQGIANIVSSLFGGYPATGSFSRSAVNVKAGAKTQLSGIVMA 227
Score = 61.5 bits (150), Expect = 2e-11
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 55 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMS 103
G +D+ +E++A G+ N+ S F YP +GS SRSAV +G +T +S
Sbjct: 174 KGYKIDSNKELVAQGIANIVSSLFGGYPATGSFSRSAVNVKAGAKTQLS 222
>gnl|CDD|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism].
Length = 554
Score = 62.3 bits (152), Expect = 2e-11
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 1 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTA 54
G D+ +E++A G+ N+AS F P +GSISRSA+ SG RT + GI A
Sbjct: 276 TGTKHDSNRELIAQGIANIASGLFGGIPATGSISRSAINIKSGARTRLSGIIHA 329
Score = 59.6 bits (145), Expect = 1e-10
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 55 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMS 103
G D+ +E++A G+ N+AS F P +GSISRSA+ SG RT +S
Sbjct: 276 TGTKHDSNRELIAQGIANIASGLFGGIPATGSISRSAINIKSGARTRLS 324
Score = 34.6 bits (80), Expect = 0.032
Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 5/134 (3%)
Query: 66 LAVGVCNLASCFF---QAYPVSGSISRSAVQSVSGV-RTPMSRVGIEYLLLTPDRCLIFP 121
+ VG+ LA F + P + R + S P+ +G L+ L F
Sbjct: 399 VVVGIL-LACLLFIRRISRPSIVVLGRVPGPAGSDNALKPLDEIGPGVLVYRLSGPLFFG 457
Query: 122 SVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPS 181
+ D + + ++ V++D + D +AA+ +E L + RRG L L
Sbjct: 458 NADRLERALLGLIEERPERVILDLKSVPYIDASAAEALEDLIKELERRGIQLLIVGLSAQ 517
Query: 182 VVAVFEGVQPKDFV 195
V+ + V
Sbjct: 518 VLRLLRRAGLLYLV 531
>gnl|CDD|162054 TIGR00815, sulP, high affinity sulphate transporter 1. The SulP
family is a large and ubiquitous family with over 30
sequenced members derived from bacteria, fungi, plants
and animals. Many organisms including Bacillus subtilis,
Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis
thaliana and Caenorhabditis elegans possess multiple
SulP family paralogues. Many of these proteins are
functionally characterized, and all are sulfate uptake
transporters. Some transport their substrate with high
affinities, while others transport it with relatively
low affinities. Most function by SO42- :H+symport, but
SO42- :HCO3- antiport has been reported for the rat
protein (spP45380). The bacterial proteins vary in size
from 434 residues to 566 residues with one exception, a
Mycobacterium tuberculosis protein with 784 residues.
The eukaryotic proteins vary in size from 611 residues
to 893 residues with one exception, a protein designated
"early nodulin 70 protein" from Glycine max which is
reported to be of 485 residues. Thus, the eukaryotic
proteins are almost without exception larger than the
prokaryotic proteins. These proteins exhibit 10-13
putative transmembrane a-helical spanners (TMSs)
depending on the protein. The phylogenetic tree for the
SulP family reveals five principal branches. Three of
these are bacterial specific as follows: one bears a
single protein from M. tuberculosis; a second bears two
proteins, one from M. tuberculosis, the other from
Synechocystis sp, and the third bears all remaining
prokaryotic proteins. The remaining two clusters bear
only eukaryotic proteins with the animal proteins all
localized to one branch and the plant and fungal
proteins localized to the other. The generalized
transport reactions catalyzed by SulP family proteins
are: (1) SO42- (out) + nH+ (out) --> SO42- (in) + nH+
(in). (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3-
(out) [Transport and binding proteins, Anions].
Length = 563
Score = 60.8 bits (148), Expect = 5e-11
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 1 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTA 54
G +DA QE++A G+ N+ FF YP +GS+SR+AV + +G RT + G+ TA
Sbjct: 287 TGYKIDANQELVAQGIANIVGSFFSCYPATGSLSRTAVNAKAGCRTQLSGVVTA 340
Score = 59.6 bits (145), Expect = 1e-10
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 55 HGKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMSRV 105
G +DA QE++A G+ N+ FF YP +GS+SR+AV + +G RT +S V
Sbjct: 287 TGYKIDANQELVAQGIANIVGSFFSCYPATGSLSRTAVNAKAGCRTQLSGV 337
>gnl|CDD|201948 pfam01740, STAS, STAS domain. The STAS (after Sulphate Transporter
and AntiSigma factor antagonist) domain is found in the
C terminal region of Sulphate transporters and bacterial
antisigma factor antagonists. It has been suggested that
this domain may have a general NTP binding function.
Length = 106
Score = 38.7 bits (91), Expect = 2e-04
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 118 LIFPSVDYVSNLVTKHSIKQGI-PVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFF 176
L F + + + + + I V++D S + D + + L + RRG L
Sbjct: 19 LDFANAEAFRERLLRALEEGEIRHVILDLSGVPFIDSSGLGALLELYKELRRRGVELVLV 78
Query: 177 NLKPSVVAVFE 187
P V E
Sbjct: 79 GPSPEVRRTLE 89
>gnl|CDD|183265 PRK11660, PRK11660, putative transporter; Provisional.
Length = 568
Score = 32.2 bits (74), Expect = 0.19
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 56 GKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMSRV 105
G A E++ G+ N+ + FF + +I+RSA +G +P+S V
Sbjct: 308 GTKHSANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPISAV 357
Score = 31.1 bits (71), Expect = 0.37
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 2 GKSVDATQEILAVGVCNLASCFFQAYPVSGSISRSAVQSVSGVRTPMVGIYTA 54
G A E++ G+ N+ + FF + +I+RSA +G +P+ + A
Sbjct: 308 GTKHSANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHA 360
>gnl|CDD|224285 COG1366, SpoIIAA, Anti-anti-sigma regulatory factor (antagonist of
anti-sigma factor) [Signal transduction mechanisms].
Length = 117
Score = 27.8 bits (62), Expect = 2.5
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 130 VTKHSIKQGIP-VVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEG 188
+ + G +V+D S + D V+ L ++ RG L ++P V E
Sbjct: 35 LLEVIAASGARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQPEVARTLEL 94
Query: 189 VQ 190
Sbjct: 95 TG 96
>gnl|CDD|182275 PRK10159, PRK10159, outer membrane phosphoporin protein E;
Provisional.
Length = 351
Score = 28.0 bits (62), Expect = 3.7
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 164 QNFSRRGQPLFFFNLKPSVVAV------FEGVQPKDFVVYYD 199
QNF Q F F L+PS+ V EG+ +D V Y D
Sbjct: 266 QNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYID 307
>gnl|CDD|129779 TIGR00696, wecG_tagA_cpsF, bacterial polymer biosynthesis proteins,
WecB/TagA/CpsF family. The WecG member of this
superfamily, believed to be
UDP-N-acetyl-D-mannosaminuronic acid transferase, plays
a role in enterobacterial common antigen (eca) synthesis
in Escherichia coli. Another family member, the Bacillus
subtilis TagA protein, is involved in the biosynthesis
of the cell wall polymer poly(glycerol phosphate). The
third family member, CpsF, CMP-N-acetylneuraminic acid
synthetase has a role in the capsular polysaccharide
biosynthesis pathway [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 177
Score = 27.4 bits (61), Expect = 4.7
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 138 GIPVVV--------DCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVA 184
GI VV S + G D ++E LCQ + P+F + KP V+
Sbjct: 13 GIGVVWGLKLLGYPQQSRVAGPD-----LMEELCQRAGKEKLPIFLYGGKPDVLQ 62
>gnl|CDD|222151 pfam13466, STAS_2, STAS domain. The STAS (after Sulphate
Transporter and AntiSigma factor antagonist) domain is
found in the C-terminal region of Sulphate transporters
and bacterial antisigma factor antagonists. It has been
suggested that this domain may have a general NTP
binding function.
Length = 80
Score = 25.3 bits (56), Expect = 9.2
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 135 IKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFE 187
+ G VVVD S + D ++ L + RG+ L L P++ +
Sbjct: 23 LAAGADVVVDLSGVERVDSAGLALLLALARRARARGRRLTLRGLPPALRRLLR 75
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.401
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,398,834
Number of extensions: 944972
Number of successful extensions: 738
Number of sequences better than 10.0: 1
Number of HSP's gapped: 737
Number of HSP's successfully gapped: 17
Length of query: 211
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 118
Effective length of database: 6,812,680
Effective search space: 803896240
Effective search space used: 803896240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.6 bits)