RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2736
(211 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 7e-08
Identities = 38/191 (19%), Positives = 62/191 (32%), Gaps = 62/191 (32%)
Query: 23 FF------QAYPVSG---SISRSAVQSVSGVRTPMVGIYTAHG-------KSVDATQEIL 66
FF +AYP + SI ++++ GV +PM+ I V+ T L
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI---SNLTQEQVQDYVNKTNSHL 360
Query: 67 ------AVGVCNLASCFFQAYPVSGSIS-----RSAVQSV---SGV---RTPMS----RV 105
+ + N A VSG ++ SG+ R P S +
Sbjct: 361 PAGKQVEISLVNGAKNLV----VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 106 GIEYL---------LLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIY-GADF-- 153
+L LL P LI + + I+ IPV + G+D
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ--IPVY----DTFDGSDLRV 470
Query: 154 TAAKVIEVLCQ 164
+ + E +
Sbjct: 471 LSGSISERIVD 481
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate,
antisigma factor antagonist, ensemble structures,
transport protein; NMR {Mycobacterium bovis}
Length = 130
Score = 42.3 bits (100), Expect = 1e-05
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 3/81 (3%)
Query: 110 LLLTPDRCLIFPSVDYVSNLVTKHSIKQGIP---VVVDCSHIYGADFTAAKVIEVLCQNF 166
++ D L F + + + V++ D TA ++ L
Sbjct: 17 VVYRYDAPLCFANAEDFRRRALTVVDQDPGQVEWFVLNAESNVEVDLTALDALDQLRTEL 76
Query: 167 SRRGQPLFFFNLKPSVVAVFE 187
RRG +K +
Sbjct: 77 LRRGIVFAMARVKQDLRESLR 97
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor
prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Length = 143
Score = 40.1 bits (94), Expect = 8e-05
Identities = 10/82 (12%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 110 LLLTPDRCLIFPSVDYVSNLVTKHSIKQGIP----VVVDCSHIYGADFTAAKVIEVLCQN 165
+ + + + + D S+ + + + G V++D + + D K + + +
Sbjct: 32 KIFQINAPIYYANSDLYSSALKRKTGVNGSENIHTVILDFTQVNFMDSVGVKTLAGIVKE 91
Query: 166 FSRRGQPLFFFNLKPSVVAVFE 187
+ G ++ VV
Sbjct: 92 YGDVGIYVYLAGCSAQVVNDLT 113
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain,
anion exchange, membrane, transport protein; HET: MSE;
1.60A {Wolinella succinogenes} PDB: 3oir_A*
Length = 135
Score = 38.9 bits (91), Expect = 2e-04
Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 118 LIFPSVDYVSNLVTKHSIKQGIPVVV-DCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFF 176
F D + ++ I++ V + + D T + ++ +RG L
Sbjct: 33 FFFGVADRLKGVL--DVIEETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLS 90
Query: 177 NLKPSVVAVFE 187
+ +
Sbjct: 91 GVSDRLYGALN 101
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange,
membrane, transport protein; HET: MSE; 1.90A {Vibrio
cholerae} PDB: 3mgl_A*
Length = 130
Score = 38.1 bits (89), Expect = 4e-04
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 118 LIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFN 177
F + + ++ I +++ + D T + +E + Q+F +RG +
Sbjct: 30 FFFAAAETFERVMGSIQETPQI-LILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISG 88
Query: 178 LKPSVVAVFE 187
V
Sbjct: 89 ANSRVSQKLV 98
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB),
bicarbonate transport, anion T membrane protein, STAS
domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Length = 118
Score = 34.3 bits (79), Expect = 0.008
Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 118 LIFPSVDYVSNLVTKHSIKQGIPVVV-DCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFF 176
L F + + + + S +G +V+ + D + + G L
Sbjct: 27 LFFAAAEGLFTDL--ESRLEGKRIVILKWDAVPVLDAGGLDAFQRFVKRL-PEGCELRVC 83
Query: 177 NLKPSVVAVFE 187
N++ +
Sbjct: 84 NVEFQPLRTMA 94
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for
structural genomics, protein struc initiative, MCSG,
STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Length = 99
Score = 30.5 bits (69), Expect = 0.13
Identities = 8/47 (17%), Positives = 21/47 (44%)
Query: 141 VVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFE 187
VV+D S + D ++ + +++ F R G + + + + +
Sbjct: 47 VVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGMNEASETMVD 93
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex,
ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei}
SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A
2gc5_A* 2gc6_A* 2gcb_A
Length = 428
Score = 31.0 bits (71), Expect = 0.23
Identities = 16/72 (22%), Positives = 21/72 (29%), Gaps = 8/72 (11%)
Query: 135 IKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDF 194
IK+GIPVV AA V+ G F+ SV + F
Sbjct: 189 IKRGIPVV-----TGNLVPDAAAVVAAKVA---TTGSQWLRFDRDFSVPKAKLHGWGQRF 240
Query: 195 VVYYDSRELDHL 206
+ L
Sbjct: 241 TYEDQDGRISDL 252
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix
two-turns helix; 2.00A {Sulfolobus shibatae} SCOP:
a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A*
1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Length = 471
Score = 30.1 bits (67), Expect = 0.47
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 10/104 (9%)
Query: 90 SAVQSVSGVRTP----MSRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDC 145
+ R+P +S +G E L+ + + P D+ +++ K QG P +V+
Sbjct: 299 ETFKKYEDFRSPSADSLSVIG-EDLIELGLKKIFNP--DFAASITRKPKAYQGHPFIVEA 355
Query: 146 SHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGV 189
+G + VL ++ + PL + + V E +
Sbjct: 356 GVAFGGSIPVGEEPIVL--RYANK-IPLIYDEKSDVIWKVVEEL 396
>2aam_A Hypothetical protein TM1410; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; HET: MSE UNL; 2.20A {Thermotoga
maritima} SCOP: c.1.8.15
Length = 309
Score = 29.0 bits (64), Expect = 1.0
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 12/105 (11%)
Query: 105 VGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPV-VVDCSHIYGADFTAAKVIEVLC 163
+E L L + + ++G + VD Y D + +
Sbjct: 208 WAVENLFYLKTIPLEENETKSRLEYLIR-LNRKGKFILSVD----YVDDGSDSFENISRI 262
Query: 164 QNFSRRGQPLFF------FNLKPSVVAVFEGVQPKDFVVYYDSRE 202
++ + + +L+ + V EG+QP + + Y+SR
Sbjct: 263 LDYYEKAKRNGCIPYAARSDLELDEMNVIEGIQPPEALKDYESRT 307
>3mk4_A Peroxisomal biogenesis factor 3; membrane, peroxisome, protein
transport; 2.42A {Homo sapiens} PDB: 3ajb_A
Length = 334
Score = 28.6 bits (63), Expect = 1.4
Identities = 9/50 (18%), Positives = 17/50 (34%)
Query: 162 LCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRELDHLLRSKM 211
Q+ G +K +V V V K + D + +R+ +
Sbjct: 128 SIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLV 177
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166,
structural genomics, JC protein structure initiative;
2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Length = 442
Score = 27.9 bits (63), Expect = 2.6
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 135 IKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDF 194
IK+ +P+V A KV+E + + ++ ++ + SV + F
Sbjct: 201 IKERVPLV-----TGERKREALKVMEDVAR---KKSSRMYVIDKDFSVKVKSLKLHENRF 252
Query: 195 VVYYDSRELDHL 206
Y + L
Sbjct: 253 -DYCGENTFEDL 263
>3gs9_A Protein GP18; NP_465809.1, structural genomics center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: MLY MSE; 1.70A {Listeria monocytogenes egd-e}
Length = 342
Score = 27.4 bits (60), Expect = 3.3
Identities = 9/74 (12%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 94 SVSGVRTPMSRVGIEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGADF 153
S+ + Y L + + F ++V ++ ++ + + + HIY
Sbjct: 38 SIEFXVAQTPKNAHCYSFLDYESSVYFRGQEFVVKQLSHDAVGKTLSKDIRAPHIY-YTC 96
Query: 154 TAAKVIEVLCQNFS 167
+ + + +F+
Sbjct: 97 QDGRQDDAITGSFT 110
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 3.4
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 9/38 (23%)
Query: 182 VVAVFEGVQPKDFVVYY--D-------SRELDHLLRSK 210
+++VFE +F D E+DH++ SK
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
3pyz_A* 3qcz_A*
Length = 437
Score = 27.1 bits (61), Expect = 4.6
Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 11/77 (14%)
Query: 135 IKQGIPVVVDCSHIYGADFTAAKVIEVLCQ----NFSRRGQPLFFFNLKPSVVAVFEGVQ 190
+ G P VV + + I + RR F +P Q
Sbjct: 195 FRGGKPAVV-------GEPDMPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQ 247
Query: 191 PKDFVVYYDSRELDHLL 207
+ R+L L
Sbjct: 248 INGWHWQCGERQLTGLP 264
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 27.0 bits (60), Expect = 5.4
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
Query: 116 RCLIFPSVDYVS------NLVTKHSIKQGIPVVVDCSHIYGA---DFTAAKV 158
++ V+Y + +T S + G + D +H GA D A
Sbjct: 167 AVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGA 218
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 26.9 bits (59), Expect = 6.3
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 132 KHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFF 176
+I+Q + + V + Y + +IE+ S G LF+F
Sbjct: 672 SANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEG--LFYF 714
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.401
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,118,316
Number of extensions: 177892
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 24
Length of query: 211
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 122
Effective length of database: 4,216,824
Effective search space: 514452528
Effective search space used: 514452528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.0 bits)