RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2736
         (211 letters)



>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa
           {Thermotoga maritima [TaxId: 2336]}
          Length = 110

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 11/96 (11%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 108 EYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIP-VVVDCSHIYGADFTAAKVIEVLCQNF 166
           +  ++     +   +   +   +           +V+D S +   D      + V+ ++ 
Sbjct: 13  DKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDA 72

Query: 167 SRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRE 202
              G+     +LK S+  + +           D+ E
Sbjct: 73  KINGKEFILSSLKESISRILKLTHLDKIFKITDTVE 108


>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 115

 Score = 38.7 bits (90), Expect = 7e-05
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 1/96 (1%)

Query: 108 EYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIP-VVVDCSHIYGADFTAAKVIEVLCQNF 166
           + L++     L   + + +   VT     + I  +V++   +   D +   VI    +  
Sbjct: 11  DVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQI 70

Query: 167 SRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYDSRE 202
              G  +    + P+V  +F+       +      +
Sbjct: 71  KNVGGQMVVCAVSPAVKRLFDMSGLFKIIRVEADEQ 106


>d2hqya2 d.108.1.4 (A:1-134) Hypothetical protein BT3689
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 134

 Score = 30.1 bits (68), Expect = 0.093
 Identities = 7/43 (16%), Positives = 17/43 (39%)

Query: 157 KVIEVLCQNFSRRGQPLFFFNLKPSVVAVFEGVQPKDFVVYYD 199
            V+  L ++  +         +  ++ A  E + P+ F+   D
Sbjct: 75  AVLRKLIEDADKEKHNFCMLGVCSNMRADLEAILPERFIFTED 117


>d1p5dx2 c.84.1.1 (X:155-258) Phosphomannomutase/phosphoglucomutase
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 104

 Score = 26.6 bits (58), Expect = 1.2
 Identities = 8/53 (15%), Positives = 17/53 (32%)

Query: 124 DYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFFF 176
            Y   +    ++ + + VVVDC +          +  + C       +    F
Sbjct: 4   RYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNF 56


>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE
           {Escherichia coli [TaxId: 562]}
          Length = 132

 Score = 25.4 bits (55), Expect = 3.6
 Identities = 5/63 (7%), Positives = 15/63 (23%), Gaps = 5/63 (7%)

Query: 136 KQGIPVVVDCSHIYGADFTAAKVIEV-----LCQNFSRRGQPLFFFNLKPSVVAVFEGVQ 190
                ++ +    +        + ++     +   F     P        +   V  G+ 
Sbjct: 52  SDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIH 111

Query: 191 PKD 193
           P  
Sbjct: 112 PWA 114


>d1vmha_ d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Clostridium
           acetobutylicum [TaxId: 1488]}
          Length = 129

 Score = 24.8 bits (54), Expect = 5.6
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 107 IEYLLLTPDRCLIFPSVDYVSNLVTKHSIKQGIPVVVDCSHIYGA 151
           IEY L T +        + V   V +  +  G+  VV C H    
Sbjct: 2   IEYSLKTSNDDQFIDITNLVKKAVDESGVSDGM-AVVFCPHTTAG 45


>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon
           Sulfolobus shibatae [TaxId: 2286]}
          Length = 164

 Score = 25.1 bits (55), Expect = 5.7
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 123 VDYVSNLVTKHSIKQGIPVVVDCSHIYGADFTAAKVIEVLCQNFSRRGQPLFF 175
            D+ +++  K    QG P +V+    +G      +   VL   ++ +  PL +
Sbjct: 26  PDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVL--RYANK-IPLIY 75


>d1wlqc_ a.4.5.52 (C:) DNA replication factor Cdt1 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 187

 Score = 24.5 bits (53), Expect = 8.2
 Identities = 4/26 (15%), Positives = 10/26 (38%)

Query: 157 KVIEVLCQNFSRRGQPLFFFNLKPSV 182
             ++ +      R + + F  +K  V
Sbjct: 33  HSMDTIVSMLHNRSETVTFAKVKQGV 58


>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius,
           formerly Bacillus acidocaldarius [TaxId: 405212]}
          Length = 105

 Score = 24.0 bits (51), Expect = 9.5
 Identities = 15/81 (18%), Positives = 21/81 (25%), Gaps = 22/81 (27%)

Query: 135 IKQGIPVVVD------------------CSHIYGADFTAAKV----IEVLCQNFSRRGQP 172
           I+   PV+VD                   +  +    T AK+           F     P
Sbjct: 14  IQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIP 73

Query: 173 LFFFNLKPSVVAVFEGVQPKD 193
                     V    G QPK+
Sbjct: 74  TLILFKGGEPVKQLIGYQPKE 94


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0644    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 737,686
Number of extensions: 32325
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 10
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.6 bits)