BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy274
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 3/184 (1%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
+EGQ+ + G L+ S+ +L++C K C G + GLE+E DY Y+
Sbjct: 34 VEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQ--- 90
Query: 62 GEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKN 121
G C + K K++ + + L K GP+SV +N + FY +
Sbjct: 91 GHMQSCQFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPL 150
Query: 122 DEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGY 181
+CSP I HAVLLVGYG++ D+P+W +NSWG ++G++ + RG+ ACG+ T+A
Sbjct: 151 RPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASS 210
Query: 182 ATID 185
A +D
Sbjct: 211 AVVD 214
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 98/190 (51%), Gaps = 19/190 (10%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYT-HQAGLESEKDYPYRN 59
LE AI TGK++ ++ QLV+CA+ + G GL Q EY + G+ E YPY+
Sbjct: 35 LESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYK- 93
Query: 60 GNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGL---NGHLIH--- 111
G+ C + K F KD + N E M + + Y P+S N L++
Sbjct: 94 --GQDDHCKFQPDKAIAFV-KDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKG 150
Query: 112 FYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 171
Y+ T K +P+ + HAVL VGYG+++ IPYW+ +NSWGP G+F IERG N
Sbjct: 151 IYSSTSCHK-----TPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKN 205
Query: 172 ACGIETIAGY 181
CG+ A Y
Sbjct: 206 MCGLAACASY 215
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 7/186 (3%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNG 60
LEGQ KTGKL+ S LV+C + GCGG + +Y + G++SE YPY
Sbjct: 34 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG-GYMTNAFQYVQRNRGIDSEDAYPYV-- 90
Query: 61 NGEKFKCAYDKS-KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
G+ C Y+ + K G + + +K+ + + GP+SV ++ L F +
Sbjct: 91 -GQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 149
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIETI 178
DE CS + + HAVL VGYG Q +W+ +NSWG ++G+ + R NNACGI +
Sbjct: 150 YYDENCSSDNLNHAVLAVGYGIQKGNKHWIIKNSWGESWGNKGYILMARNKNNACGIANL 209
Query: 179 AGYATI 184
A + +
Sbjct: 210 ASFPKM 215
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNG 60
LEGQ KTGKL+ S LV+C + GCGG + +Y + G++SE YPY
Sbjct: 32 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG-GYMTNAFQYVQKNRGIDSEDAYPYV-- 88
Query: 61 NGEKFKCAYDKS-KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
G++ C Y+ + K G + + +K+ + + GP+SV ++ L F +
Sbjct: 89 -GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 147
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIETI 178
DE C+ + + HAVL VGYG Q +W+ +NSWG ++G+ + R NNACGI +
Sbjct: 148 YYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANL 207
Query: 179 AGYATI 184
A + +
Sbjct: 208 ASFPKM 213
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNG 60
LEGQ KTGKL+ S LV+C + GCGG + +Y + G++SE YPY
Sbjct: 34 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG-GYMTNAFQYVQKNRGIDSEDAYPYV-- 90
Query: 61 NGEKFKCAYDKS-KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
G++ C Y+ + K G + + +K+ + + GP+SV ++ L F +
Sbjct: 91 -GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 149
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIETI 178
DE C+ + + HAVL VGYG Q +W+ +NSWG ++G+ + R NNACGI +
Sbjct: 150 YYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANL 209
Query: 179 AGYATI 184
A + +
Sbjct: 210 ASFPKM 215
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNG 60
LEGQ KTGKL+ S LV+C + GCGG + +Y + G++SE YPY
Sbjct: 33 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG-GYMTNAFQYVQKNRGIDSEDAYPYV-- 89
Query: 61 NGEKFKCAYDKS-KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
G++ C Y+ + K G + + +K+ + + GP+SV ++ L F +
Sbjct: 90 -GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 148
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIETI 178
DE C+ + + HAVL VGYG Q +W+ +NSWG ++G+ + R NNACGI +
Sbjct: 149 YYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANL 208
Query: 179 AGYATI 184
A + +
Sbjct: 209 ASFPKM 214
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNG 60
LEGQ KTGKL+ S LV+C + GCGG + +Y + G++SE YPY
Sbjct: 36 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG-GYMTNAFQYVQKNRGIDSEDAYPYV-- 92
Query: 61 NGEKFKCAYDKS-KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
G++ C Y+ + K G + + +K+ + + GP+SV ++ L F +
Sbjct: 93 -GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 151
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIETI 178
DE C+ + + HAVL VGYG Q +W+ +NSWG ++G+ + R NNACGI +
Sbjct: 152 YYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANL 211
Query: 179 AGYATI 184
A + +
Sbjct: 212 ASFPKM 217
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNG 60
LEGQ KTGKL+ S LV+C + GCGG + +Y + G++SE YPY
Sbjct: 133 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG-GYMTNAFQYVQKNRGIDSEDAYPYV-- 189
Query: 61 NGEKFKCAYDKS-KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
G++ C Y+ + K G + + +K+ + + GP+SV ++ L F +
Sbjct: 190 -GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 248
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIETI 178
DE C+ + + HAVL VGYG Q +W+ +NSWG ++G+ + R NNACGI +
Sbjct: 249 YYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANL 308
Query: 179 AGYATI 184
A + +
Sbjct: 309 ASFPKM 314
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 96/186 (51%), Gaps = 7/186 (3%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNG 60
LEGQ KTGKL+ S LV+C + GCGG + +Y + G++SE YPY
Sbjct: 34 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG-GYMTNAFQYVQKNRGIDSEDAYPYV-- 90
Query: 61 NGEKFKCAYDKS-KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
G++ C Y+ + K G + + +K+ + + GP+SV ++ L F +
Sbjct: 91 -GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 149
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIETI 178
DE C+ + + HAVL VGYG+ +W+ +NSWG G+ K+ R NNACGI +
Sbjct: 150 YYDESCNSDNLNHAVLAVGYGESKGNKHWIIKNSWGENWGMGGYIKMARNKNNACGIANL 209
Query: 179 AGYATI 184
A + +
Sbjct: 210 ASFPKM 215
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 7/183 (3%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNG 60
LEGQ TG L+ + LV+C + GCGG + +Y + G++SE YPY
Sbjct: 34 LEGQLKKATGALLNLAPQNLVDCVSENDGCGG-GYMTNAFQYVQRNRGIDSEDAYPYV-- 90
Query: 61 NGEKFKCAYDKS-KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
G+ C Y+ + K G + +K+ + GP+SV ++ L F +
Sbjct: 91 -GQDESCMYNPTGKAAKCRGYREIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGV 149
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIETI 178
DE CS +A+ HAVL VGYG Q +W+ +NSWG + G+ + R NNACGI +
Sbjct: 150 YYDENCSSDALNHAVLAVGYGIQAGNKHWIIKNSWGESWGNAGYILMARNKNNACGIANL 209
Query: 179 AGY 181
A +
Sbjct: 210 ASF 212
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 17/191 (8%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRN 59
+EGQY + FS+ QLV+C++ G GC G +E +Y Q GLE+E YPY
Sbjct: 125 MEGQYMKNERTSISFSEQQLVDCSRPW-GNNGCGGGLMENAYQYLKQFGLETESSYPYTA 183
Query: 60 GNGEKFKCAYDK----SKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLNGHLIHFYN 114
G+ C Y+K +KV F + +GSE +K ++ GP +V ++
Sbjct: 184 VEGQ---CRYNKQLGVAKVTGF----YTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMY 236
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NAC 173
+ I ++ + CSP + HAVL VGYG Q YW+ +NSWG + G+ ++ R N C
Sbjct: 237 RSGIYQS-QTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMC 295
Query: 174 GIETIAGYATI 184
GI ++A +
Sbjct: 296 GIASLASLPMV 306
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 11/189 (5%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
LE Q +KTGKLV S LV+C+ + G GC+G + +Y G++S+ YPY+
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
KC YD SK + T + L + + +K+ + GP+SVG++ F+
Sbjct: 94 ---AMDLKCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
+ C+ N + H VL+VGYG + YWL +NSWG +EG+ ++ R N CGI
Sbjct: 150 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 208
Query: 176 ETIAGYATI 184
+ Y I
Sbjct: 209 ASFPSYPEI 217
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 13/189 (6%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRN 59
+EGQ A++ G+L S+ L++C+ G GCDG ++ Y H G+ SE YPY
Sbjct: 148 VEGQLALQRGRLTSLSEQNLIDCSSSY-GNAGCDGGWMDSAFSYIHDYGIMSESAYPYE- 205
Query: 60 GNGEKFKCAYDKSK-VKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNG-HLIHFYNGTP 117
+ C +D S+ V +G L ++ + + GP++V ++ + FY+G
Sbjct: 206 --AQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGL 263
Query: 118 IKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNNACGI 175
D+ C+ + + H VL+VGYG + YW+ +NSWG + G+++ R GNN CGI
Sbjct: 264 FY--DQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNN-CGI 320
Query: 176 ETIAGYATI 184
T A Y +
Sbjct: 321 ATAASYPAL 329
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 6/185 (3%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGG--CDGLEQPIEYTHQAGLESEKDYPYRN 59
+EGQ+ + LV S+ LV C GCGG D I ++ + +E YPY +
Sbjct: 34 IEGQWQVAGNPLVSLSEQMLVSCDTIDFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVS 93
Query: 60 GNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
GNGE+ +C + ++ + + L + GPL++ ++ YNG +
Sbjct: 94 GNGEQPQCQMNGHEIGAAITDHVDLPQDEDAIAAYLAENGPLAIAVDATSFMDYNGGILT 153
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIA 179
C+ + H VLLVGY + PYW+ +NSW + ++G+ +IE+G N C +
Sbjct: 154 S----CTSEQLDHGVLLVGYNDASNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAV 209
Query: 180 GYATI 184
A +
Sbjct: 210 SSAVV 214
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
LE Q +KTGKLV S LV+C+ + G GC+G + +Y G++S+ YPY+
Sbjct: 132 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 191
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
+ KC YD SK + T + L + + +K+ + GP+SVG++ F+
Sbjct: 192 AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 247
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
+ C+ N + H VL+VGYG + YWL +NSWG +EG+ ++ R N CGI
Sbjct: 248 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 306
Query: 176 ETIAGYATI 184
+ Y I
Sbjct: 307 ASFPSYPEI 315
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 17/196 (8%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYT-HQAGLESEKDYPYRN 59
+E +AI TG LV S+ +L++C + GC +G Q E+ G+ SE DYPY+
Sbjct: 35 IEAAHAIATGNLVSLSEQELIDCVDESEGC--YNGWHYQSFEWVVKHGGIASEADYPYKA 92
Query: 60 GNGE------KFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFY 113
+G+ + K D V++ + + S +L + P+SV ++ HFY
Sbjct: 93 RDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQ--PISVSIDAKDFHFY 150
Query: 114 NGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GN- 170
+G I SP I H VL+VGYG +D + YW+A+NSWG +G+ +I+R GN
Sbjct: 151 SGG-IYDGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNL 209
Query: 171 -NACGIETIAGYATID 185
CG+ A Y I+
Sbjct: 210 LGVCGMNYFASYPIIE 225
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
LE Q +KTGKLV S LV+C+ + G GC+G + +Y G++S+ YPY+
Sbjct: 35 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 94
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
+ KC YD SK + T + L + + +K+ + GP+SVG++ F+
Sbjct: 95 AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 150
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
+ C+ N + H VL+VGYG + YWL +NSWG +EG+ ++ R N CGI
Sbjct: 151 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 209
Query: 176 ETIAGYATI 184
+ Y I
Sbjct: 210 ASFPSYPEI 218
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
LE Q +KTGKLV S LV+C+ + G GC+G + +Y G++S+ YPY+
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
+ KC YD SK + T + L + + +K+ + GP+SVG++ F+
Sbjct: 94 AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
+ C+ N + H VL+VGYG + YWL +NSWG +EG+ ++ R N CGI
Sbjct: 150 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 208
Query: 176 ETIAGYATI 184
+ Y I
Sbjct: 209 ASFPSYPEI 217
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
LE Q +KTGKLV S LV+C+ + G GC+G + +Y G++S+ YPY+
Sbjct: 35 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 94
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
+ KC YD SK + T + L + + +K+ + GP+SVG++ F+
Sbjct: 95 AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 150
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
+ C+ N + H VL+VGYG + YWL +NSWG +EG+ ++ R N CGI
Sbjct: 151 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 209
Query: 176 ETIAGYATI 184
+ Y I
Sbjct: 210 ASFPSYPEI 218
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
LE Q +KTGKLV S LV+C+ + G GC+G + +Y G++S+ YPY+
Sbjct: 36 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 95
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
+ KC YD SK + T + L + + +K+ + GP+SVG++ F+
Sbjct: 96 AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 151
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
+ C+ N + H VL+VGYG + YWL +NSWG +EG+ ++ R N CGI
Sbjct: 152 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 210
Query: 176 ETIAGYATI 184
+ Y I
Sbjct: 211 ASFPSYPEI 219
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
LE Q +KTGKLV S LV+C+ + G GC+G + +Y G++S+ YPY+
Sbjct: 37 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 96
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
+ KC YD SK + T + L + + +K+ + GP+SVG++ F+
Sbjct: 97 AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 152
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
+ C+ N + H VL+VGYG + YWL +NSWG +EG+ ++ R N CGI
Sbjct: 153 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 211
Query: 176 ETIAGYATI 184
+ Y I
Sbjct: 212 ASFPSYPEI 220
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
LE Q +KTGKLV S LV+C+ + G GC+G + +Y G++S+ YPY+
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
+ KC YD SK + T + L + + +K+ + GP+SVG++ F+
Sbjct: 94 AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
+ C+ N + H VL+VGYG + YWL +NSWG +EG+ ++ R N CGI
Sbjct: 150 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 208
Query: 176 ETIAGYATI 184
+ Y I
Sbjct: 209 ASFPSYPEI 217
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
LE Q +KTGKLV S LV+C+ + G GC+G + +Y G++S+ YPY+
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
+ KC YD SK + T + L + + +K+ + GP+SVG++ F+
Sbjct: 94 AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
+ C+ N + H VL+VGYG + YWL +NSWG +EG+ ++ R N CGI
Sbjct: 150 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 208
Query: 176 ETIAGYATI 184
+ Y I
Sbjct: 209 ASFPSYPEI 217
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
LE Q +KTGKLV S LV+C+ + G GC+G + +Y G++S+ YPY+
Sbjct: 35 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 94
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
+ KC YD SK + T + L + + +K+ + GP+SVG++ F+
Sbjct: 95 AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 150
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
+ C+ N + H VL+VGYG + YWL +NSWG +EG+ ++ R N CGI
Sbjct: 151 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 209
Query: 176 ETIAGYATI 184
+ Y I
Sbjct: 210 ASFPSYPEI 218
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
LE Q +KTGKLV S LV+C+ + G GC+G + +Y G++S+ YPY+
Sbjct: 34 LEAQLKLKTGKLVTLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
+ KC YD SK + T + L + + +K+ + GP+SVG++ F+
Sbjct: 94 AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
+ C+ N + H VL+VGYG + YWL +NSWG +EG+ ++ R N CGI
Sbjct: 150 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 208
Query: 176 ETIAGYATI 184
+ Y I
Sbjct: 209 ASFPSYPEI 217
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 98/194 (50%), Gaps = 17/194 (8%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQ-AGLESEKDYPYR 58
LEGQ KTGKLV S+ LV+C++ G GC+G + + +Y + GL+SE+ YPY
Sbjct: 34 LEGQMFRKTGKLVSLSEQNLVDCSRP-QGNQGCNGGFMARAFQYVKENGGLDSEESYPYV 92
Query: 59 NGNGEKFKCAYD-KSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLN-GHL-IHFYNG 115
C Y ++ V TG + + + K + GP+SV ++ GH FY
Sbjct: 93 ---AVDEICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKS 149
Query: 116 TPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG-N 170
+ D CS + H VL+VGYG D+ YWL +NSWGP G+ KI + N
Sbjct: 150 GIYFEPD--CSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKN 207
Query: 171 NACGIETIAGYATI 184
N CGI T A Y +
Sbjct: 208 NHCGIATAASYPNV 221
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 98/189 (51%), Gaps = 11/189 (5%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
LE Q +KTGKLV S LV+C+ + G GC+G + +Y G++S+ YPY+
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
+ KC YD SK + T + + L + + +K+ + GP+SVG++ F+
Sbjct: 94 AMDQ---KCQYD-SKYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
+ C+ N + H VL+VGYG + YWL +NSWG ++G+ ++ R N CGI
Sbjct: 150 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGI 208
Query: 176 ETIAGYATI 184
+ Y I
Sbjct: 209 ASFPSYPEI 217
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 98/194 (50%), Gaps = 17/194 (8%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQ-AGLESEKDYPYR 58
LEGQ KTGKLV S+ LV+C++ G GC+G + + +Y + GL+SE+ YPY
Sbjct: 34 LEGQMFRKTGKLVSLSEQNLVDCSRP-QGNQGCNGGFMARAFQYVKENGGLDSEESYPYV 92
Query: 59 NGNGEKFKCAYD-KSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLN-GHL-IHFYNG 115
C Y ++ V TG + + + K + GP+SV ++ GH FY
Sbjct: 93 ---AVDEICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKS 149
Query: 116 TPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG-N 170
+ D CS + H VL+VGYG D+ YWL +NSWGP G+ KI + N
Sbjct: 150 GIYFEPD--CSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKN 207
Query: 171 NACGIETIAGYATI 184
N CGI T A Y +
Sbjct: 208 NHCGIATAASYPNV 221
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
LE Q +KTGKLV S LV+C+ + G GC+G + +Y G++S+ YPY+
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDCSTKKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
+ KC YD S + T + + L + + +K+ + GP+SVG++ F+
Sbjct: 94 AMDQ---KCQYD-SAYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
+ C+ N + H VL+VGYG + YWL +NSWG ++G+ ++ R N CGI
Sbjct: 150 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGI 208
Query: 176 ETIAGYATI 184
+ Y I
Sbjct: 209 ASFPSYPEI 217
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 89/195 (45%), Gaps = 24/195 (12%)
Query: 2 LEGQYAIKTGKLVE--FSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYR 58
+E Q I G + S+ QLV+C GC G + Y Q G++SE YPY
Sbjct: 149 IESQMKIANGAGYDSSVSEQQLVDCVPNALGCSG-GWMNDAFTYVAQNGGIDSEGAYPYE 207
Query: 59 NGNGEKFKCAYDKSKVKL-FTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIH------ 111
+G C YD ++V +G +L + ++ GP++V +
Sbjct: 208 MADG---NCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGG 264
Query: 112 -FYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER-G 169
+YN T C N HAVL+VGYG ++ YWL +NSWG +G+FKI R
Sbjct: 265 VYYNPT--------CETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNA 316
Query: 170 NNACGIETIAGYATI 184
NN CGI +A T+
Sbjct: 317 NNHCGIAGVASVPTL 331
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
LEGQ KTG+L+ S+ LV+C+ G GC+G ++ +Y GL+SE+ YPY
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
+ C Y+ K + F+ E + K + GP+SV ++ GH + +
Sbjct: 93 ---ATEESCKYNP-KYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
G + + CS + H VL+VGYG + DD YWL +NSWG G+ K+ +
Sbjct: 149 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDDNKYWLVKNSWGEEWGMGGYVKMAKDR 205
Query: 170 NNACGIETIAGYATI 184
N CGI + A Y T+
Sbjct: 206 RNHCGIASAASYPTV 220
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
LEGQ KTG+L+ S+ LV+C+ G GC+G ++ +Y GL+SE+ YPY
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
+ C Y+ K + F+ E + K + GP+SV ++ GH + +
Sbjct: 93 ---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
G + + CS + H VL+VGYG + D+ YWL +NSWG G+ K+ +
Sbjct: 149 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 205
Query: 170 NNACGIETIAGYATI 184
N CGI + A Y T+
Sbjct: 206 RNHCGIASAASYPTV 220
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
LEGQ KTG+L+ S+ LV+C+ G GC+G ++ +Y GL+SE+ YPY
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
+ C Y+ K + F+ E + K + GP+SV ++ GH + +
Sbjct: 93 ---ATEESCKYNP-KYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
G + + CS + H VL+VGYG + D+ YWL +NSWG G+ K+ +
Sbjct: 149 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 205
Query: 170 NNACGIETIAGYATI 184
N CGI + A Y T+
Sbjct: 206 RNHCGIASAASYPTV 220
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
LEGQ KTG+L+ S+ LV+C+ G GC+G ++ +Y GL+SE+ YPY
Sbjct: 35 LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 93
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
+ C Y+ K + F+ E + K + GP+SV ++ GH + +
Sbjct: 94 ---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 149
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
G + + CS + H VL+VGYG + D+ YWL +NSWG G+ K+ +
Sbjct: 150 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 206
Query: 170 NNACGIETIAGYATI 184
N CGI + A Y T+
Sbjct: 207 RNHCGIASAASYPTV 221
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
LEGQ KTG+L+ S+ LV+C+ G GC+G ++ +Y GL+SE+ YPY
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
+ C Y+ K + F+ E + K + GP+SV ++ GH + +
Sbjct: 93 ---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
G + + CS + H VL+VGYG + D+ YWL +NSWG G+ K+ +
Sbjct: 149 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 205
Query: 170 NNACGIETIAGYATI 184
N CGI + A Y T+
Sbjct: 206 RNHCGIASAASYPTV 220
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
LEGQ KTG+L+ S+ LV+C+ G GC+G ++ +Y GL+SE+ YPY
Sbjct: 35 LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 93
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
+ C Y+ K + F+ E + K + GP+SV ++ GH + +
Sbjct: 94 ---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 149
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
G + + CS + H VL+VGYG + D+ YWL +NSWG G+ K+ +
Sbjct: 150 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 206
Query: 170 NNACGIETIAGYATI 184
N CGI + A Y T+
Sbjct: 207 RNHCGIASAASYPTV 221
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
LEGQ KTG+L+ S+ LV+C+ G GC+G ++ +Y GL+SE+ YPY
Sbjct: 130 LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 188
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
+ C Y+ K + F+ E + K + GP+SV ++ GH + +
Sbjct: 189 ---ATEESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 244
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
G + + CS + H VL+VGYG + D+ YWL +NSWG G+ K+ +
Sbjct: 245 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 301
Query: 170 NNACGIETIAGYATI 184
N CGI + A Y T+
Sbjct: 302 RNHCGIASAASYPTV 316
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
LEGQ KTG+L+ S+ LV+C+ G GC+G ++ +Y GL+SE+ YPY
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
+ C Y+ K + F+ E + K + GP+SV ++ GH + +
Sbjct: 93 ---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
G + + CS + H VL+VGYG + D+ YWL +NSWG G+ K+ +
Sbjct: 149 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 205
Query: 170 NNACGIETIAGYATI 184
N CGI + A Y T+
Sbjct: 206 RNHCGIASAASYPTV 220
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
LEGQ KTG+L+ S+ LV+C+ G GC+G ++ +Y GL+SE+ YPY
Sbjct: 72 LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 130
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
+ C Y+ K + F+ E + K + GP+SV ++ GH + +
Sbjct: 131 ---ATEESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 186
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
G + + CS + H VL+VGYG + D+ YWL +NSWG G+ K+ +
Sbjct: 187 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 243
Query: 170 NNACGIETIAGYATI 184
N CGI + A Y T+
Sbjct: 244 RNHCGIASAASYPTV 258
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 10/187 (5%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ---AGLESEKDYPYR 58
+E Q+ + L S+ LV C K SGC G + E+ Q + +E YPY
Sbjct: 34 VECQWFLAGHPLTNLSEQMLVSCDKTDSGCSG-GLMNNAFEWIVQENNGAVYTEDSYPYA 92
Query: 59 NGNGEKFKCAYDKSKV-KLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTP 117
+G G C V TG L + ++ + L GP++V ++ Y G
Sbjct: 93 SGEGISPPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASSWMTYTGGV 151
Query: 118 IKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
+ C A+ H VLLVGY +PYW+ +NSW +EG+ +I +G+N C ++
Sbjct: 152 MTS----CVSEALDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKE 207
Query: 178 IAGYATI 184
A A +
Sbjct: 208 EASSAVV 214
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 31/196 (15%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAK--QCSGCGG---CDGLEQPIEYTHQAGLESEKDYP 56
+EG I TG L+ S+ +LV+C + GC G DG + I + G+ +E +YP
Sbjct: 34 VEGINKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFII---NNGGINTEANYP 90
Query: 57 YRNGNGEKFKCAYDKSK---VKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNG---HLI 110
Y E+ +C D + V + T ++ Y N E + Y P+SV L +
Sbjct: 91 Y---TAEEGQCNLDLQQEKYVSIDTYENVPYNN--EWALQTAVAYQPVSVALEAAGYNFQ 145
Query: 111 HFYNGTPIKKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER 168
H+ +G P A+ HAV +VGYG + I YW+ +NSWG +EG+ +I+R
Sbjct: 146 HYSSGI-------FTGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQR 198
Query: 169 ---GNNACGIETIAGY 181
G CGI A Y
Sbjct: 199 NVGGVGQCGIAKKASY 214
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 96/195 (49%), Gaps = 20/195 (10%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
LEGQ KTG+L+ S+ LV+C+ G GC+G ++ +Y GL+SE+ YPY
Sbjct: 126 LEGQMFRKTGRLISLSEQNLVDCSGP-EGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 184
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
+ C Y+ K + F+ E + K + GP+SV ++ GH + +
Sbjct: 185 ---ATEESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 240
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
G + + CS + H VL+VGYG + D YWL +NSWG G+ K+ +
Sbjct: 241 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDR 297
Query: 170 NNACGIETIAGYATI 184
N CGI + A Y T+
Sbjct: 298 RNHCGIASAASYPTV 312
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 31/196 (15%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAK--QCSGCGG---CDGLEQPIEYTHQAGLESEKDYP 56
+EG I TG L+ S+ +LV+C + GC G DG + I + G+ +E +YP
Sbjct: 34 VEGINKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFII---NNGGINTEANYP 90
Query: 57 YRNGNGEKFKCAYDKSK---VKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNG---HLI 110
Y E+ +C D + V + T ++ Y N E + Y P+SV L +
Sbjct: 91 Y---TAEEGQCNLDLQQEKYVSIDTYENVPYNN--EWALQTAVAYQPVSVALEAAGYNFQ 145
Query: 111 HFYNGTPIKKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER 168
H+ +G P A+ HAV +VGYG + I YW+ +NSWG +EG+ +I+R
Sbjct: 146 HYSSGI-------FTGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQR 198
Query: 169 ---GNNACGIETIAGY 181
G CGI A Y
Sbjct: 199 NVGGVGQCGIAKKASY 214
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 19/191 (9%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAK--QCSGCGG---CDGLEQPIEYTHQAGLESEKDY 55
+EG I +G L+ S+ +L++C + GC G DG + I + G+ +E++Y
Sbjct: 33 TVEGINKITSGSLISLSEQELIDCGRTQNTRGCDGGYITDGFQFII---NDGGINTEENY 89
Query: 56 PYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNG 115
PY +G+ D+ V + T ++ Y N E + Y P+SV L+ F
Sbjct: 90 PYTAQDGDCDVALQDQKYVTIDTYENVPYNN--EWALQTAVTYQPVSVALDAAGDAFKQ- 146
Query: 116 TPIKKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER---GN 170
+ P A+ HA+++VGYG + + YW+ +NSW +EG+ +I R G
Sbjct: 147 ---YASGIFTGPCGTAVDHAIVIVGYGTEGGVDYWIVKNSWDTTWGEEGYMRILRNVGGA 203
Query: 171 NACGIETIAGY 181
CGI T+ Y
Sbjct: 204 GTCGIATMPSY 214
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 23/193 (11%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAK--QCSGCGG---CDGLEQPIEYTHQAGLESEKDY 55
+EG I TG L+ S+ +L++C + GC G DG + I + G+ +E++Y
Sbjct: 33 TVEGINKIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFII---NNGGINTEENY 89
Query: 56 PYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNG 115
PY +GE ++ V + T ++ Y N E + Y P+SV L+ G
Sbjct: 90 PYTAQDGECNVDLQNEKYVTIDTYENVPYNN--EWALQTAVTYQPVSVALDAA------G 141
Query: 116 TPIKKNDE--ICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--- 168
K+ P AI HAV +VGYG + I YW+ +NSW +EG+ +I R
Sbjct: 142 DAFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVG 201
Query: 169 GNNACGIETIAGY 181
G CGI T+ Y
Sbjct: 202 GAGTCGIATMPSY 214
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 10/187 (5%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ---AGLESEKDYPYR 58
+E Q+ + L S+ LV C K SGC G + E+ Q + +E YPY
Sbjct: 34 VECQWFLAGHPLTNLSEQMLVSCDKTDSGCSG-GLMNNAFEWIVQENNGAVYTEDSYPYA 92
Query: 59 NGNGEKFKCAYDKSKV-KLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTP 117
+G G C V TG L + ++ + L GP++V ++ Y G
Sbjct: 93 SGEGISPPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASSWMTYTGGV 151
Query: 118 IKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
+ C + H VLLVGY +PYW+ +NSW +EG+ +I +G+N C ++
Sbjct: 152 MTS----CVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKE 207
Query: 178 IAGYATI 184
A A +
Sbjct: 208 EASSAVV 214
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 10/187 (5%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ---AGLESEKDYPYR 58
+E Q+ + L ++ LV C K SGC G + E+ Q + +E YPY
Sbjct: 34 VECQWFLAGHPLTNLAEQMLVSCDKTDSGCSG-GLMNNAFEWIVQENNGAVYTEDSYPYA 92
Query: 59 NGNGEKFKCAYDKSKV-KLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTP 117
+G G C V TG L + ++ + L GP++V ++ Y G
Sbjct: 93 SGEGISPPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASSWMTYTGGV 151
Query: 118 IKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
+ C + H VLLVGY +PYW+ +NSW +EG+ +I +G+N C ++
Sbjct: 152 MTS----CVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKE 207
Query: 178 IAGYATI 184
A A +
Sbjct: 208 EASSAVV 214
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 10/187 (5%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ---AGLESEKDYPYR 58
+E Q+ + L ++ LV C K SGC G + E+ Q + +E YPY
Sbjct: 34 VECQWFLAGHPLTNLAEQMLVSCDKTDSGCSG-GLMNNAFEWIVQENNGAVYTEDSYPYA 92
Query: 59 NGNGEKFKCAYDKSKV-KLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTP 117
+G G C V TG L + ++ + L GP++V ++ Y G
Sbjct: 93 SGEGISPPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASSWMTYTGGV 151
Query: 118 IKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
+ C + H VLLVGY +PYW+ +NSW +EG+ +I +G+N C ++
Sbjct: 152 MTS----CVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKE 207
Query: 178 IAGYATI 184
A A +
Sbjct: 208 EASSAVV 214
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 20/197 (10%)
Query: 1 MLEGQYAIKT--GKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYR 58
MLE + I T + S ++V C+ GC G +Y G+ E +PY
Sbjct: 241 MLEARIRILTNNSQTPILSPQEVVSCSPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYT 300
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFN-----GSETMKKILYKYGPLSVGLNGH--LIH 111
+ C ++ ++ ++ + + MK L K+GP++V H +H
Sbjct: 301 ATDA---PCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLH 357
Query: 112 FYNGTPIKKNDEICSP----NAIGHAVLLVGYGKQ--DDIPYWLARNSWGPIGPDEGFFK 165
+++G I + + P HAVLLVGYGK + YW+ +NSWG + G+F+
Sbjct: 358 YHSG--IYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFR 415
Query: 166 IERGNNACGIETIAGYA 182
I RG + C IE+IA A
Sbjct: 416 IRRGTDECAIESIAMAA 432
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
+EG AI+TG LV S+ +L++C + GC G ++ EY + GL +E YPYR
Sbjct: 37 VEGINAIRTGSLVSLSEQELIDC--DTADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYR 94
Query: 59 NGNG--EKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGL--NGHLIHFYN 114
G + A + V G + N E + + + P+SV + +G FY+
Sbjct: 95 AARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQ-PVSVAVEASGKAFMFYS 153
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG-KQDDIPYWLARNSWGPIGPDEGFFKIERGNNA- 172
C + H V +VGYG +D YW +NSWGP ++G+ ++E+ + A
Sbjct: 154 EGVFTGE---CG-TELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGAS 209
Query: 173 ---CGIETIAGY 181
CGI A Y
Sbjct: 210 GGLCGIAMEASY 221
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 17/192 (8%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
LEGQ KTG+L+ S+ LV+C+ G GC+G ++ +Y GL+SE+ YPY
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
+ C Y+ K + F+ E + K + GP+SV ++ GH + +
Sbjct: 93 ---ATEESCKYNP-KYSVANDVGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG-KQDDIPYWLARNSWGPIGPDEGFFKIERG-NNA 172
G + S N HA+L+VGYG ++ YWL +NSWG G+ K+ + N
Sbjct: 149 GIYFSSDCSSSSLN---HAMLVVGYGFISNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNH 205
Query: 173 CGIETIAGYATI 184
CGI + A Y T+
Sbjct: 206 CGIASAASYPTV 217
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 89/199 (44%), Gaps = 22/199 (11%)
Query: 1 MLEGQYAIKT--GKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYR 58
MLE + I T + S ++V C++ GC G +Y GL E +PY
Sbjct: 242 MLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPY- 300
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNG------SETMKKILYKYGPLSVGLNGH--LI 110
G C + + ++ ++ Y G MK L +GP++V + +
Sbjct: 301 --TGTDSPCKMKEDCFRYYS-SEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFL 357
Query: 111 HF----YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDD--IPYWLARNSWGPIGPDEGFF 164
H+ Y+ T ++ D HAVLLVGYG + YW+ +NSWG + G+F
Sbjct: 358 HYKKGIYHHTGLR--DPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYF 415
Query: 165 KIERGNNACGIETIAGYAT 183
+I RG + C IE+IA AT
Sbjct: 416 RIRRGTDECAIESIAVAAT 434
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 17/188 (9%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIE--YTHQAGLESEKDYPYRN 59
+EG I TG L+ S+ QLV+C GC G G P + G+ SE+ YPYR
Sbjct: 36 VEGINQIVTGDLISLSEQQLVDCTTANHGCRG--GWMNPAFQFIVNNGGINSEETYPYRG 93
Query: 60 GNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLN--GHLIHFYNGTP 117
+G + V + + ++ N K + + P+SV ++ G Y
Sbjct: 94 QDG-ICNSTVNAPVVSIDSYENVPSHNEQSLQKAVANQ--PVSVTMDAAGRDFQLYRSGI 150
Query: 118 IKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG----NNAC 173
+ I + HA+ +VGYG ++D +W+ +NSWG + G+ + ER + C
Sbjct: 151 FTGSCNI----SANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKC 206
Query: 174 GIETIAGY 181
GI A Y
Sbjct: 207 GITRFASY 214
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 11/178 (6%)
Query: 3 EGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNG 62
E Y ++ S+ +LV+CA Q GC G D + + IEY Q G+ E+ YPY
Sbjct: 45 ESAYLAYRNTSLDLSEQELVDCASQ-HGCHG-DTIPRGIEYIQQNGVVEERSYPYV---A 99
Query: 63 EKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNG----HLIHFYNGTPI 118
+ +C S+ + +Y + +++ L + + G Y+G I
Sbjct: 100 REQRCRRPNSQHYGISNYCQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTI 159
Query: 119 KKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIE 176
++D PN HAV +VGYG YW+ RNSW D G+ + GNN IE
Sbjct: 160 IQHDNGYQPNY--HAVNIVGYGSTQGDDYWIVRNSWDTTWGDSGYGYFQAGNNLMMIE 215
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 15/191 (7%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
+EG AI TG+L+ S+ Q+V+C G D + G+ S+ +YPY +
Sbjct: 34 IEGIDAITTGRLISVSEQQIVDCDTXXXXXXGGDADDAFRWVITNGGIASDANYPYTGVD 93
Query: 62 GEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHF--YNGTPIK 119
G C +K G + + S + + + P+SV + F Y G I
Sbjct: 94 G---TCDLNKPIAARIDGYTNVPNSSSALLDAVAKQ--PVSVNIYTSSTSFQLYTGPGIF 148
Query: 120 KNDEICS--PNAIGHAVLLVGYGKQ-DDIPYWLARNSWGPIGPDEGFFKIERGNN----A 172
CS P + H VL+VGYG + YW+ +NSWG +G+ I R N
Sbjct: 149 AGSS-CSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGV 207
Query: 173 CGIETIAGYAT 183
C I+ Y T
Sbjct: 208 CAIDAWGSYPT 218
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 20/185 (10%)
Query: 8 IKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYT-HQAGLESEKDYPYRNGNGEKFK 66
I+TG+L+ S+ +LV+C GC G + +Y G++++++YPY G
Sbjct: 40 IRTGQLISLSEQELVDCDTASHGCNG-GWMNNAFQYIITNGGIDTQQNYPYSAVQGS--- 95
Query: 67 CAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDE--I 124
C + +V G + N ++ + P+SV + G P +
Sbjct: 96 CKPYRLRVVSINGFQRVTRNNESALQSAVASQ-PVSVTVEAA------GAPFQHYSSGIF 148
Query: 125 CSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIETI 178
P A H V++VGYG Q YW+ RNSWG ++G+ +ER + CGI +
Sbjct: 149 TGPCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQL 208
Query: 179 AGYAT 183
Y T
Sbjct: 209 PSYPT 213
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 23/186 (12%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQAGLESEKDYPYRN 59
+EG I TG+L+ S+ +L++C ++ GC G G + ++Y G+ +E++YPY
Sbjct: 33 TIEGINKIITGQLISLSEQELLDCERRSHGCDG--GYQTTSLQYVVDNGVHTEREYPYEK 90
Query: 60 GNGEKFKC-AYDKSKVKLF-TGKDFLYFNGSETMKKILYKYGPLSVGLN--GHLIHFYNG 115
G +C A DK K++ TG ++ N ++ + + P+SV + G FY G
Sbjct: 91 KQG---RCRAKDKKGPKVYITGYKYVPANDEISLIQAIANQ-PVSVVTDSRGRGFQFYKG 146
Query: 116 TPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----N 171
+ C N HAV VGYGK Y L +NSWGP ++G+ +I+R +
Sbjct: 147 GIY---EGPCGTNT-DHAVTAVGYGKT----YLLLKNSWGPNWGEKGYIRIKRASGRSKG 198
Query: 172 ACGIET 177
CG+ T
Sbjct: 199 TCGVYT 204
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 88/191 (46%), Gaps = 20/191 (10%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVEC-AKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRN 59
+EG IKT KLV S+ +LV+C Q GC G ++ E+ Q G+ +E +YPY
Sbjct: 35 VEGINQIKTNKLVSLSEQELVDCDTDQNQGCNG-GLMDYAFEFIKQRGGITTEANYPYEA 93
Query: 60 GNGEKFKCAYDKSKVKLFT--GKDFLYFNGSETMKKILYKYGPLSVGLN--GHLIHFYNG 115
+G C K + G + + N + K + P+SV ++ G FY+
Sbjct: 94 YDG---TCDVSKENAPAVSIDGHENVPENDENALLKAVANQ-PVSVAIDAGGSDFQFYSE 149
Query: 116 TPIKKNDEICSPNAIGHAVLLVGYGKQ-DDIPYWLARNSWGPIGPDEGFFKIERG----N 170
+ C + H V +VGYG D YW +NSWGP ++G+ ++ERG
Sbjct: 150 GVFTGS---CG-TELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKE 205
Query: 171 NACGIETIAGY 181
CGI A Y
Sbjct: 206 GLCGIAMEASY 216
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 17/187 (9%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
+E I+TG L+ S+ QLV+C K+ GC G + G+++E +YPY+
Sbjct: 33 TVESINQIRTGNLISLSEQQLVDCNKKNHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAV 92
Query: 61 NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
G C K V++ K + N + K + + +++ + Y K
Sbjct: 93 QGP---CRAAKKVVRIDGYKGVPHCNENALKKAVASQPSVVAIDASSKQFQHY------K 143
Query: 121 NDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNNACGIE 176
+ P + H V++VGY K YW+ RNSWG ++G+ +++R G CGI
Sbjct: 144 SGIFSGPCGTKLNHGVVIVGYWKD----YWIVRNSWGRYWGEQGYIRMKRVGGCGLCGIA 199
Query: 177 TIAGYAT 183
+ Y T
Sbjct: 200 RLPYYPT 206
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 15/186 (8%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEY-THQAGLESEKDYPYRN 59
+E I+TG L+ S+ QLV+C+K+ GC G ++ +Y G+++E +YPY+
Sbjct: 33 TVESINQIRTGNLISLSEQQLVDCSKKNHGCKG-GYFDRAYQYIIANGGIDTEANYPYKA 91
Query: 60 GNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
G C K V++ K N + + + +++ + Y G
Sbjct: 92 FQGP---CRAAKKVVRIDGCKGVPQCNENALKNAVASQPSVVAIDASSKQFQHYKGGIFT 148
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNNACGIET 177
+ H V++VGYGK YW+ RNSWG ++G+ +++R G CGI
Sbjct: 149 GP----CGTKLNHGVVIVGYGKD----YWIVRNSWGRHWGEQGYTRMKRVGGCGLCGIAR 200
Query: 178 IAGYAT 183
+ Y T
Sbjct: 201 LPFYPT 206
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 19/184 (10%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQ-PIEYTHQAGLESEKDYPYRN 59
+EG I TG L+E S+ +LV+C K GC G G + ++Y G+ + K YPY+
Sbjct: 33 TVEGINKIVTGNLLELSEQELVDCDKHSYGCKG--GYQTTSLQYVANNGVHTSKVYPYQ- 89
Query: 60 GNGEKFKC-AYDKSKVKL-FTGKDFLYFNGSETMKKILYKYGPLSVGLN--GHLIHFYNG 115
+++KC A DK K+ TG + N + L PLSV + G Y
Sbjct: 90 --AKQYKCRATDKPGPKVKITGYKRVPSNXETSFLGALANQ-PLSVLVEAGGKPFQLYKS 146
Query: 116 TPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNN-- 171
D C + HAV VGYG D Y + +NSWGP ++G+ +++R GN+
Sbjct: 147 GVF---DGPCG-TKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQG 202
Query: 172 ACGI 175
CG+
Sbjct: 203 TCGV 206
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
GHA+ ++G+G ++ +PYWL NSW D GFFKI RG N CGIE+
Sbjct: 204 GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 250
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
GHA+ ++G+G ++ +PYWL NSW D GFFKI RG N CGIE+
Sbjct: 260 GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 306
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
GHA+ ++G+G ++ +PYWL NSW D GFFKI RG N CGIE+
Sbjct: 198 GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 244
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTH---QAGLESEKDYPYR 58
LEG + KTGKLV S+ +L++C++ G C G E + + G+ SE YPY
Sbjct: 40 LEGAHCAKTGKLVSLSEQELMDCSRA-EGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYL 98
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLI--HFYNGT 116
E+ + + VK+ KD SE K P+S+ + + FY+
Sbjct: 99 -ARDEECRAQSCEKVVKILGFKDVP--RRSEAAMKAALAKSPVSIAIEADQMPFQFYHEG 155
Query: 117 PIKKNDEICSPNAIGHAVLLVGYG--KQDDIPYWLARNSWG 155
D C + + H VLLVGYG K+ +W+ +NSWG
Sbjct: 156 VF---DASCGTD-LDHGVLLVGYGTDKESKKDFWIMKNSWG 192
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 86 NGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDI 145
N + ++K + KYGP+ G + + I K+ I GHA+ ++G+G ++
Sbjct: 157 NDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKH--ITGETLGGHAIRIIGWGVENKA 214
Query: 146 PYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
PYWL NSW + G+F+I RG + C IE+
Sbjct: 215 PYWLIANSWNEDWGENGYFRIVRGRDECSIES 246
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET--IAGYATID 185
GHA+ ++G+G ++ PYWL NSW D GFFKI RG + CGIE+ +AG D
Sbjct: 261 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 317
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET--IAGYATID 185
GHA+ ++G+G ++ PYWL NSW D GFFKI RG + CGIE+ +AG D
Sbjct: 199 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 255
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET--IAGYATID 185
GHA+ ++G+G ++ PYWL NSW D GFFKI RG + CGIE+ +AG D
Sbjct: 200 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 256
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET--IAGYATID 185
GHA+ ++G+G ++ PYWL NSW D GFFKI RG + CGIE+ +AG D
Sbjct: 198 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 254
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET--IAGYATID 185
GHA+ ++G+G ++ PYWL NSW D GFFKI RG + CGIE+ +AG D
Sbjct: 204 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 260
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 56 PYRNGNGEKFKCA------YDKS--KVKLFTGKDFLYFNGSETMKKILYKYGPL--SVGL 105
P G G+ KC+ Y S + K F + N + + +YK GP+ + +
Sbjct: 117 PPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSV 176
Query: 106 NGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFK 165
+ + +G + EI GHA+ ++G+G ++ PYWL NSW D GFFK
Sbjct: 177 YSDFLLYKSGVYQHVSGEIMG----GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFK 232
Query: 166 IERGNNACGIET 177
I RG + CGIE+
Sbjct: 233 ILRGQDHCGIES 244
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET--IAGYATID 185
GHA+ ++G+G ++ PYWL NSW D GFFKI RG + CGIE+ +AG D
Sbjct: 149 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 205
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 34/190 (17%)
Query: 14 VEFSKSQLVECAKQCSGCG-GCDG--LEQPIEYTHQAGLESEKDYPY-----------RN 59
V S L+ C CS CG GC+G ++ Y GL S+ PY +N
Sbjct: 122 VHISAGDLLAC---CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKN 178
Query: 60 G-------NGEKFKCAY--DKSKVKLFTGKDFLYF--NGSETMKKILYKYGPLSVGLNGH 108
G N + KC Y D + + + + + G + + L+ GP V + +
Sbjct: 179 GYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY 238
Query: 109 --LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKI 166
I + +G + + GHAV LVG+G + +PYW NSW +G+F I
Sbjct: 239 EDFIAYNSGVYHHVSGQYLG----GHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLI 294
Query: 167 ERGNNACGIE 176
RG++ CGIE
Sbjct: 295 RRGSSECGIE 304
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 34/190 (17%)
Query: 14 VEFSKSQLVECAKQCSGCG-GCDG--LEQPIEYTHQAGLESEKDYPY-----------RN 59
V S L+ C CS CG GC+G ++ Y GL S+ PY +N
Sbjct: 144 VHISAGDLLAC---CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKN 200
Query: 60 G-------NGEKFKCAY--DKSKVKLFTGKDFLYF--NGSETMKKILYKYGPLSVGLNGH 108
G N + KC Y D + + + + + G + + L+ GP V + +
Sbjct: 201 GYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY 260
Query: 109 --LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKI 166
I + +G + + GHAV LVG+G + +PYW NSW +G+F I
Sbjct: 261 EDFIAYNSGVYHHVSGQYLG----GHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLI 316
Query: 167 ERGNNACGIE 176
RG++ CGIE
Sbjct: 317 RRGSSECGIE 326
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 34/190 (17%)
Query: 14 VEFSKSQLVECAKQCSGCG-GCDG--LEQPIEYTHQAGLESEKDYPY-----------RN 59
V S L+ C CS CG GC+G ++ Y GL S+ PY +N
Sbjct: 121 VHISAGDLLAC---CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKN 177
Query: 60 G-------NGEKFKCAY--DKSKVKLFTGKDFLYF--NGSETMKKILYKYGPLSVGLNGH 108
G N + KC Y D + + + + + G + + L+ GP V + +
Sbjct: 178 GYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY 237
Query: 109 --LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKI 166
I + +G + + GHAV LVG+G + +PYW NSW +G+F I
Sbjct: 238 EDFIAYNSGVYHHVSGQYLG----GHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLI 293
Query: 167 ERGNNACGIE 176
RG++ CGIE
Sbjct: 294 RRGSSECGIE 303
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 23/193 (11%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
+E QYAI+ L FS+ +LV+C+ + +GC G + GL S+ DYPY +
Sbjct: 53 VESQYAIRKKALFLFSEQELVDCSVKNNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNL 112
Query: 62 GEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGH-LIHFYNGTPIKK 120
E C + + +T K ++ + K+ L GP+S+ + FY G
Sbjct: 113 PE--TCNLKRCNER-YTIKSYVSI-PDDKFKEALRYLGPISISIAASDDFAFYRGG-FYD 167
Query: 121 NDEICSPNAIGHAVLLVGYGKQD----------DIPYWLARNSWGPIGPDEGFFKIERGN 170
+ +PN HAV+LVGYG +D Y++ +NSWG + G+ +E
Sbjct: 168 GECGAAPN---HAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDE 224
Query: 171 N----ACGIETIA 179
N C I T A
Sbjct: 225 NGYKKTCSIGTEA 237
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 56 PYRNGNGEKFKCA------YDKS--KVKLFTGKDFLYFNGSETMKKILYKYGPL--SVGL 105
P G G+ KC+ Y S + K F + N + + +YK GP+ + +
Sbjct: 117 PPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSV 176
Query: 106 NGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFK 165
+ + +G + EI GHA+ ++G+G ++ PYWL NSW D GFFK
Sbjct: 177 YSDFLLYKSGVYQHVSGEIMG----GHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFK 232
Query: 166 IERGNNACGIET 177
I RG + CGIE+
Sbjct: 233 ILRGQDHCGIES 244
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 17/180 (9%)
Query: 8 IKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKC 67
I+TG L+ S+ +LV+C K+ GC G + + G++++ +YPY+ G
Sbjct: 40 IRTGNLISLSEQELVDCDKKNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGP---- 95
Query: 68 AYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSP 127
SKV G + + F +K+ + P +V ++ F + P
Sbjct: 96 CQAASKVVSIDGYNGVPFCNEXALKQAV-AVQPSTVAIDASSAQFQQ----YSSGIFSGP 150
Query: 128 --NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNNACGIETIAGYAT 183
+ H V +VGY YW+ RNSWG ++G+ ++ R G CGI + Y T
Sbjct: 151 CGTKLNHGVTIVGYQAN----YWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 75 KLFTGKDFLYFNGSETMKKILYKYGPL--SVGLNGHLIHFYNGTPIKKNDEICSPNAIGH 132
K F + N + + +YK GP+ + + + + +G + EI GH
Sbjct: 96 KHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GH 151
Query: 133 AVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
A+ ++G+G ++ PYWL NSW D GFFKI RG + CGIE+
Sbjct: 152 AIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 196
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 132 HAVLLVGYGKQDD--IPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYAT 183
HAVLLVGYG + YW+ +NSWG + G+F+I RG + C IE+IA AT
Sbjct: 11 HAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 64
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 31/203 (15%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGG---CDGLEQPIEYTHQAGLESEKDYPYR 58
+E QYAI+ KL+ S+ +LV+C+ + GC G + E IE G+ + DYPY
Sbjct: 50 VESQYAIRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIEL---GGICPDGDYPYV 106
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGP--LSVGLNGHLIHFYNGT 116
+ C D+ K + K++L ++ +K+ L GP +SV ++ + G
Sbjct: 107 SDAPN--LCNIDRCTEK-YGIKNYLSVPDNK-LKEALRFLGPISISVAVSDDFAFYKEGI 162
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIP----------YWLARNSWGPIGPDEGFFKI 166
D C + + HAV+LVG+G ++ + Y++ +NSWG + GF I
Sbjct: 163 F----DGECG-DQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINI 217
Query: 167 ERGNNA----CGIETIAGYATID 185
E + CG+ T A I+
Sbjct: 218 ETDESGLMRKCGLGTDAFIPLIE 240
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 31/203 (15%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGG---CDGLEQPIEYTHQAGLESEKDYPYR 58
+E QYAI+ KL+ S+ +LV+C+ + GC G + E IE G+ + DYPY
Sbjct: 51 VESQYAIRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIEL---GGICPDGDYPYV 107
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGP--LSVGLNGHLIHFYNGT 116
+ C D+ K + K++L ++ +K+ L GP +SV ++ + G
Sbjct: 108 SDAPN--LCNIDRCTEK-YGIKNYLSVPDNK-LKEALRFLGPISISVAVSDDFAFYKEGI 163
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIP----------YWLARNSWGPIGPDEGFFKI 166
D C + + HAV+LVG+G ++ + Y++ +NSWG + GF I
Sbjct: 164 F----DGECG-DQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINI 218
Query: 167 ERGNNA----CGIETIAGYATID 185
E + CG+ T A I+
Sbjct: 219 ETDESGLMRKCGLGTDAFIPLIE 241
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
LEGQ KTG+L+ S+ LV+C+ G GC+G ++ +Y GL+SE+ YPY
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
+ C Y+ K + F+ E + K + GP+SV ++ GH + +
Sbjct: 93 ---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG 140
G + + CS + H VL+VGYG
Sbjct: 149 GIYFEPD---CSSEDMDHGVLVVGYG 171
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
LEGQ KTG+L+ S+ LV+C+ G GC+G ++ +Y GL+SE+ YPY
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
+ C Y+ K + F+ E + K + GP+SV ++ GH + +
Sbjct: 93 ---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG 140
G + + CS + H VL+VGYG
Sbjct: 149 GIYFEPD---CSSEDMDHGVLVVGYG 171
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 19/160 (11%)
Query: 22 VECAKQCSGCGGCDGLE--QPIEYTHQAGLESEKDYPYRNGNGE-----------KFKCA 68
V+ C G C+G +Y HQ G+ E Y+ + E +FK
Sbjct: 59 VQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKEC 118
Query: 69 YDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICS 126
+ L+ D+ +G E M +Y GP+S G+ L ++ G + D
Sbjct: 119 HAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQD---- 174
Query: 127 PNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKI 166
I H V + G+G D YW+ RNSWG + G+ +I
Sbjct: 175 TTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 19/160 (11%)
Query: 22 VECAKQCSGCGGCDGLE--QPIEYTHQAGLESEKDYPYRNGNGE-----------KFKCA 68
V+ C G C+G +Y HQ G+ E Y+ + E +FK
Sbjct: 94 VQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKEC 153
Query: 69 YDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICS 126
+ L+ D+ +G E M +Y GP+S G+ L ++ G + D
Sbjct: 154 HAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTT-- 211
Query: 127 PNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKI 166
I H V + G+G D YW+ RNSWG + G+ +I
Sbjct: 212 --YINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 249
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 23/171 (13%)
Query: 3 EGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPY----- 57
E Y + ++ ++ +LV+CA Q GC G D + + IEY G+ E Y Y
Sbjct: 44 ESAYLAYRQQSLDLAEQELVDCASQ-HGCHG-DTIPRGIEYIQHNGVVQESYYRYVAREQ 101
Query: 58 --RNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGL---NGHLIHF 112
R N ++F + + +++ N ++ + + + ++V + +
Sbjct: 102 SCRRPNAQRFGIS---NYCQIYPP------NANKIREALAQTHSAIAVIIGIKDLDAFRH 152
Query: 113 YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGF 163
Y+G I + D PN HAV +VGY + YW+ RNSW D G+
Sbjct: 153 YDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 23/171 (13%)
Query: 3 EGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPY----- 57
E Y + ++ ++ +LV+CA Q GC G D + + IEY G+ E Y Y
Sbjct: 124 ESAYLAYRDQSLDLAEQELVDCASQ-HGCHG-DTIPRGIEYIQHNGVVQESYYRYVAREQ 181
Query: 58 --RNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGL---NGHLIHF 112
R N ++F + + +++ N ++ + + + ++V + +
Sbjct: 182 SCRRPNAQRFGIS---NYCQIYPP------NANKIREALAQTHSAIAVIIGIKDLDAFRH 232
Query: 113 YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGF 163
Y+G I + D PN HAV +VGY + YW+ RNSW D G+
Sbjct: 233 YDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 281
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 23/171 (13%)
Query: 3 EGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPY----- 57
E Y + ++ ++ +LV+CA Q GC G D + + IEY G+ E Y Y
Sbjct: 44 ESAYLAYRQQSLDLAEQELVDCASQ-HGCHG-DTIPRGIEYIQHNGVVQESYYRYVAREQ 101
Query: 58 --RNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGL---NGHLIHF 112
R N ++F + + +++ N ++ + + + ++V + +
Sbjct: 102 SCRRPNAQRFGIS---NYCQIYPP------NANKIREALAQTHSAIAVIIGIKDLDAFRH 152
Query: 113 YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGF 163
Y+G I + D PN HAV +VGY + YW+ RNSW D G+
Sbjct: 153 YDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 23/171 (13%)
Query: 3 EGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPY----- 57
E Y + ++ ++ +LV+CA Q GC G D + + IEY G+ E Y Y
Sbjct: 44 ESAYLAYRNQSLDLAEQELVDCASQ-HGCHG-DTIPRGIEYIQHNGVVQESYYRYVAREQ 101
Query: 58 --RNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGL---NGHLIHF 112
R N ++F + + +++ N ++ + + + ++V + +
Sbjct: 102 SCRRPNAQRFGIS---NYCQIYPP------NVNKIREALAQTHSAIAVIIGIKDLDAFRH 152
Query: 113 YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGF 163
Y+G I + D PN HAV +VGY + YW+ RNSW D G+
Sbjct: 153 YDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
+EG I+TG L E+S+ +L++C ++ GC G ++ Q G+ YPY
Sbjct: 33 TIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSA-LQLVAQYGIHYRNTYPYE-- 89
Query: 61 NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYG--PLSVGLNGHLIHFYNGTPI 118
G + C + K D + +LY P+SV L F +
Sbjct: 90 -GVQRYCR-SREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDF----QL 143
Query: 119 KKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NA 172
+ P N + HAV VGYG Y L +NSWG + G+ +I+RG
Sbjct: 144 YRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Query: 173 CGIETIAGY 181
CG+ T + Y
Sbjct: 200 CGLYTSSFY 208
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
+EG I+TG L E+S+ +L++C ++ GC G ++ Q G+ YPY
Sbjct: 33 TIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSA-LQLVAQYGIHYRNTYPYE-- 89
Query: 61 NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYG--PLSVGLNGHLIHFYNGTPI 118
G + C + K D + +LY P+SV L F +
Sbjct: 90 -GVQRYCR-SREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDF----QL 143
Query: 119 KKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NA 172
+ P N + HAV VGYG Y L +NSWG + G+ +I+RG
Sbjct: 144 YRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Query: 173 CGIETIAGY 181
CG+ T + Y
Sbjct: 200 CGLYTSSFY 208
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 78/190 (41%), Gaps = 25/190 (13%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
+E I+TG L E+S+ +L++C ++ GC G ++ Q G+ YPY
Sbjct: 185 IESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPW-SALQLVAQYGIHYRNTYPYE--- 240
Query: 62 GEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYG--PLSVGLN--GHLIHFYNGTP 117
G + C + K D + +LY P+SV L G Y G
Sbjct: 241 GVQRYCR-SREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGI 299
Query: 118 IKKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----N 171
P N + HAV VGYG Y L RNSWG + G+ +I+RG
Sbjct: 300 F------VGPCGNKVDHAVAAVGYGPN----YILIRNSWGTGWGENGYIRIKRGTGNSYG 349
Query: 172 ACGIETIAGY 181
CG+ T + Y
Sbjct: 350 VCGLYTSSFY 359
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 80/187 (42%), Gaps = 9/187 (4%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
+EG I+TGKLVE S+ +LV+C ++ GC G +EY + G+ YPY+
Sbjct: 33 TVEGINKIRTGKLVELSEQELVDCERRSHGCKG-GYPPYALEYVAKNGIHLRSKYPYKAK 91
Query: 61 NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
G VK N + I + + V G Y G
Sbjct: 92 QGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIF-- 149
Query: 121 NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNN--ACGIE 176
+ C + HAV VGYGK Y L +NSWG ++G+ +I+R GN+ CG+
Sbjct: 150 -EGPCG-TKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLY 207
Query: 177 TIAGYAT 183
+ Y T
Sbjct: 208 KSSYYPT 214
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
+EG I+TG L ++S+ +L++C ++ GC G ++ Q G+ YPY
Sbjct: 33 TIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWS-ALQLVAQYGIHYRNTYPYE-- 89
Query: 61 NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYG--PLSVGLNGHLIHFYNGTPI 118
G + C + K D + +LY P+SV L F +
Sbjct: 90 -GVQRYCR-SREKGPYAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDF----QL 143
Query: 119 KKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NA 172
+ P N + HAV VGYG Y L +NSWG + G+ +I+RG
Sbjct: 144 YRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Query: 173 CGIETIAGY 181
CG+ T + Y
Sbjct: 200 CGLYTSSFY 208
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
+EG I+TG L ++S+ +L++C ++ GC G ++ Q G+ YPY
Sbjct: 33 TIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWS-ALQLVAQYGIHYRNTYPYE-- 89
Query: 61 NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYG--PLSVGLNGHLIHFYNGTPI 118
G + C + K D + +LY P+SV L F +
Sbjct: 90 -GVQRYCR-SREKGPYAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDF----QL 143
Query: 119 KKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NA 172
+ P N + HAV VGYG Y L +NSWG + G+ +I+RG
Sbjct: 144 YRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Query: 173 CGIETIAGY 181
CG+ T + Y
Sbjct: 200 CGLYTSSFY 208
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
+EG I+TG L ++S+ +L++C ++ GC G ++ Q G+ YPY
Sbjct: 33 TIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWS-ALQLVAQYGIHYRNTYPYE-- 89
Query: 61 NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYG--PLSVGLNGHLIHFYNGTPI 118
G + C + K D + +LY P+SV L F +
Sbjct: 90 -GVQRYCR-SREKGPYAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDF----QL 143
Query: 119 KKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NA 172
+ P N + HAV VGYG Y L +NSWG + G+ +I+RG
Sbjct: 144 YRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Query: 173 CGIETIAGY 181
CG+ T + Y
Sbjct: 200 CGLYTSSFY 208
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 86/189 (45%), Gaps = 13/189 (6%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
+EG I+TGKLVE S+ +LV+C ++ GC G +EY + G+ YPY+
Sbjct: 33 TVEGINKIRTGKLVELSEQELVDCERRSHGCKG-GYPPYALEYVAKNGIHLRSKYPYKAK 91
Query: 61 NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGL--NGHLIHFYNGTPI 118
G VK +G + N + + K P+SV + G Y G
Sbjct: 92 QGTCRAKQVGGPIVKT-SGVGRVQPNNEGNLLNAIAKQ-PVSVVVESKGRPFQLYKGGIF 149
Query: 119 KKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNN--ACG 174
+ C + HAV VGYGK Y L +NSWG ++G+ +I+R GN+ CG
Sbjct: 150 ---EGPCG-TKVEHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCG 205
Query: 175 IETIAGYAT 183
+ + Y T
Sbjct: 206 LYKSSYYPT 214
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 119 KKNDEICSPNAIGHAVLLVGYGKQ-----DDIPYWLARNSWGPIGPDEGFFKIER-GNNA 172
KK +C + HAV +VGYG + YW+ RNSWGP DEG+FK++ G
Sbjct: 186 KKVQNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTH 245
Query: 173 CGIETIAGYATIDV 186
C I +V
Sbjct: 246 CHFNFIHSVVIFNV 259
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 119 KKNDEICSPNAIGHAVLLVGYGKQ-----DDIPYWLARNSWGPIGPDEGFFKIER-GNNA 172
KK +C + HAV +VGYG + YW+ RNSWGP DEG+FK++ G
Sbjct: 187 KKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTH 246
Query: 173 CGIETIAGYATIDV 186
C I +V
Sbjct: 247 CHFNFIHSVVIFNV 260
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
+EG I+TG L ++S+ +L++C ++ GC G ++ Q G+ YPY
Sbjct: 33 TIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSA-LQLVAQYGIHYRNTYPYE-- 89
Query: 61 NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYG--PLSVGLNGHLIHFYNGTPI 118
G + C + K D + +LY P+SV L F +
Sbjct: 90 -GVQRYCR-SREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDF----QL 143
Query: 119 KKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NA 172
+ P N + HAV VGYG Y L +NSWG + G+ +I+RG
Sbjct: 144 YRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Query: 173 CGIETIAGY 181
CG+ T + Y
Sbjct: 200 CGLYTSSFY 208
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQ-PIEYTHQAGLESEKDYPYRN 59
+EG IKTG LVE S+ +LV+C Q GC G + ++Y Q G+ YPY
Sbjct: 33 TVEGINKIKTGNLVELSEQELVDCDLQSYGCN--RGYQSTSLQYVAQNGIHLRAKYPYI- 89
Query: 60 GNGEKFKCAYDK---SKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
++ C ++ KVK N + I ++ + V G Y G
Sbjct: 90 --AKQQTCRANQVGGPKVKTNGVGRVQSNNEGSLLNAIAHQPVSVVVESAGRDFQNYKGG 147
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNN--A 172
E + HAV VGYGK Y L +NSWGP + G+ +I R GN+
Sbjct: 148 IF----EGSCGTKVDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGYIRIRRASGNSPGV 203
Query: 173 CGI 175
CG+
Sbjct: 204 CGV 206
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 79/187 (42%), Gaps = 9/187 (4%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
+EG I+TGKLVE S+ +LV+C ++ GC G +EY + G+ YPY+
Sbjct: 139 TVEGINKIRTGKLVELSEQELVDCERRSHGCKG-GYPPYALEYVAKNGIHLRSKYPYKAK 197
Query: 61 NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
G VK N + I + + V G Y G
Sbjct: 198 QGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIF-- 255
Query: 121 NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNN--ACGIE 176
+ C G AV VGYGK Y L +NSWG ++G+ +I+R GN+ CG+
Sbjct: 256 -EGPCGTKVDG-AVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLY 313
Query: 177 TIAGYAT 183
+ Y T
Sbjct: 314 KSSYYPT 320
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 19/189 (10%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
+EG I TG+L+ S+ +L++C ++ GC G L ++Y +G+ + YPY
Sbjct: 34 VEGINKIVTGQLLSLSEQELLDCERRSYGCRGGFPLYA-LQYVANSGIHLRQYYPY---E 89
Query: 62 GEKFKCAYDKS---KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPI 118
G + +C ++ KVK N +++I + + V G Y G
Sbjct: 90 GVQRQCRASQAKGPKVKTDGVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIF 149
Query: 119 KKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACG 174
C +I HAV VGYG Y L +NSWG + G+ +I+RG+ ACG
Sbjct: 150 AGP---CG-TSIDHAVAAVGYGND----YILIKNSWGTGWGEGGYIRIKRGSGNPQGACG 201
Query: 175 IETIAGYAT 183
+ + + + T
Sbjct: 202 VLSDSVFPT 210
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 33.1 bits (74), Expect = 0.091, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 147 YWLARNSWGPIGPDEGFFKIERG-NNACGIETIAGYATI 184
YWL +NSWG G+ K+ + N CGI + A Y T+
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 42
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFF 164
GHAVL VGY D+I ++ RNSWG ++G+F
Sbjct: 236 GHAVLCVGY--DDEIRHFRIRNSWGNNVGEDGYF 267
>pdb|2ZL1|A Chain A, Mp1-P14 Scaffolding Complex
Length = 143
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 83 LYFNGS-ETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAV 134
LYF GS + +K+ LYK P GL+ ++ +G P+ K + + NA HA+
Sbjct: 15 LYFQGSADDLKRFLYKKLPSVEGLHAIVVSDRDGVPVIK---VANDNAPEHAL 64
>pdb|1SKO|A Chain A, Mp1-P14 Complex
pdb|3CPT|A Chain A, Mp1-P14 Scaffolding Complex
Length = 143
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 83 LYFNGS-ETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAV 134
LYF GS + +K+ LYK P GL+ ++ +G P+ K + + NA HA+
Sbjct: 15 LYFQGSADDLKRFLYKKLPSVEGLHAIVVSDRDGVPVIK---VANDNAPEHAL 64
>pdb|1CB8|A Chain A, Chondroitinase Ac Lyase From Flavobacterium Heparinum
Length = 678
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 111 HFYNGTPIKKN---DEICSPNAIGHAVLLVGYGKQ 142
++Y+ P +N +EI +P A+G ++L+ YGK+
Sbjct: 93 YWYDSDPKSRNWWHNEIATPQALGEMLILMRYGKK 127
>pdb|1HM2|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HM3|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HMU|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-oligosaccharide Complexes And
Mutagenesis
pdb|1HMW|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-oligosaccharide Complexes And
Mutagenesis
Length = 700
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 111 HFYNGTPIKKN---DEICSPNAIGHAVLLVGYGKQ 142
++Y+ P +N +EI +P A+G ++L+ YGK+
Sbjct: 115 YWYDSDPKSRNWWHNEIATPQALGEMLILMRYGKK 149
>pdb|1LI1|C Chain C, The 1.9-A Crystal Structure Of The Noncollagenous (Nc1)
Domain Of Human Placenta Collagen Iv Shows Stabilization
Via A Novel Type Of Covalent Met-Lys Cross-Link
pdb|1LI1|F Chain F, The 1.9-A Crystal Structure Of The Noncollagenous (Nc1)
Domain Of Human Placenta Collagen Iv Shows Stabilization
Via A Novel Type Of Covalent Met-Lys Cross-Link
Length = 228
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 17/85 (20%)
Query: 75 KLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAV 134
KL++G LYF G E K +GL G + ++ P C+P + +
Sbjct: 26 KLWSGYSLLYFEGQE-------KAHNQDLGLAGSCLARFSTMPFL----YCNPGDVCY-- 72
Query: 135 LLVGYGKQDDIPYWLARNSWGPIGP 159
Y ++D YWL+ + P+ P
Sbjct: 73 ----YASRNDKSYWLSTTAPLPMMP 93
>pdb|1M3D|C Chain C, Structure Of Type Iv Collagen Nc1 Domains
pdb|1M3D|F Chain F, Structure Of Type Iv Collagen Nc1 Domains
pdb|1M3D|I Chain I, Structure Of Type Iv Collagen Nc1 Domains
pdb|1M3D|L Chain L, Structure Of Type Iv Collagen Nc1 Domains
pdb|1T60|C Chain C, Crystal Structure Of Type Iv Collagen Nc1 Domain From
Bovine Lens Capsule
pdb|1T60|F Chain F, Crystal Structure Of Type Iv Collagen Nc1 Domain From
Bovine Lens Capsule
pdb|1T60|I Chain I, Crystal Structure Of Type Iv Collagen Nc1 Domain From
Bovine Lens Capsule
pdb|1T60|L Chain L, Crystal Structure Of Type Iv Collagen Nc1 Domain From
Bovine Lens Capsule
pdb|1T60|O Chain O, Crystal Structure Of Type Iv Collagen Nc1 Domain From
Bovine Lens Capsule
pdb|1T60|R Chain R, Crystal Structure Of Type Iv Collagen Nc1 Domain From
Bovine Lens Capsule
pdb|1T60|U Chain U, Crystal Structure Of Type Iv Collagen Nc1 Domain From
Bovine Lens Capsule
pdb|1T60|X Chain X, Crystal Structure Of Type Iv Collagen Nc1 Domain From
Bovine Lens Capsule
pdb|1T61|C Chain C, Crystal Structure Of Collagen Iv Nc1 Domain From Placenta
Basement Membrane
pdb|1T61|F Chain F, Crystal Structure Of Collagen Iv Nc1 Domain From Placenta
Basement Membrane
Length = 227
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 17/85 (20%)
Query: 75 KLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAV 134
KL++G LYF G E K +GL G + ++ P C+P + +
Sbjct: 25 KLWSGYSLLYFEGQE-------KAHNQDLGLAGSCLARFSTMPFL----YCNPGDVCY-- 71
Query: 135 LLVGYGKQDDIPYWLARNSWGPIGP 159
Y ++D YWL+ + P+ P
Sbjct: 72 ----YASRNDKSYWLSTTAPLPMMP 92
>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
Length = 263
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 108 HLIHFYNGTP--IKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFK 165
HL H P + + + P LL G+ + + P W + W +EG F
Sbjct: 112 HLWHLVPDWPKVLAEAIRVLKPGG----ALLEGWDQAEASPEWTLQERWRAFAAEEG-FP 166
Query: 166 IERGNNACGIETI 178
+ERG +A ++ +
Sbjct: 167 VERGLHAKRLKEV 179
>pdb|1DIK|A Chain A, Pyruvate Phosphate Dikinase
Length = 874
Score = 26.6 bits (57), Expect = 8.5, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 11 GKLVEFS--KSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYR 58
G+LVE + K + +C CG G +E+ H+ GL P+R
Sbjct: 809 GQLVEMAVKKGRQTRPGLKCGICGEHGGDPSSVEFCHKVGLNYVSCSPFR 858
>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 26.6 bits (57), Expect = 8.5, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 11 GKLVEFS--KSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYR 58
G+LVE + K + +C CG G +E+ H+ GL P+R
Sbjct: 808 GQLVEMAVKKGRQTRPGLKCGICGEHGGDPSSVEFCHKVGLNYVSCSPFR 857
>pdb|2R82|A Chain A, Pyruvate Phosphate Dikinase (Ppdk) Triple Mutant
R219eE271RS262D Adapts A Second Conformational State
Length = 874
Score = 26.6 bits (57), Expect = 8.5, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 11 GKLVEFS--KSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYR 58
G+LVE + K + +C CG G +E+ H+ GL P+R
Sbjct: 809 GQLVEMAVKKGRQTRPGLKCGICGEHGGDPSSVEFCHKVGLNYVSCSPFR 858
>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
Mg-Phosphonopyruvate
Length = 873
Score = 26.6 bits (57), Expect = 8.5, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 11 GKLVEFS--KSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYR 58
G+LVE + K + +C CG G +E+ H+ GL P+R
Sbjct: 808 GQLVEMAVKKGRQTRPGLKCGICGEHGGDPSSVEFCHKVGLNYVSCSPFR 857
>pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Dikinase
Length = 873
Score = 26.6 bits (57), Expect = 8.5, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 11 GKLVEFS--KSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYR 58
G+LVE + K + +C CG G +E+ H+ GL P+R
Sbjct: 808 GQLVEMAVKKGRQTRPGLKCGICGEHGGDPSSVEFCHKVGLNYVSCSPFR 857
>pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 26.6 bits (57), Expect = 8.5, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 11 GKLVEFS--KSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYR 58
G+LVE + K + +C CG G +E+ H+ GL P+R
Sbjct: 808 GQLVEMAVKKGRQTRPGLKCGICGEHGGDPSSVEFCHKVGLNYVSCSPFR 857
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,677,274
Number of Sequences: 62578
Number of extensions: 308260
Number of successful extensions: 842
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 134
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)