Query psy274
Match_columns 187
No_of_seqs 117 out of 1154
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 23:59:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542|consensus 100.0 3.1E-54 6.7E-59 349.7 12.8 180 1-185 189-372 (372)
2 cd02621 Peptidase_C1A_Cathepsi 100.0 2.1E-50 4.5E-55 324.2 17.5 176 1-183 37-241 (243)
3 cd02620 Peptidase_C1A_Cathepsi 100.0 3.3E-50 7.1E-55 321.8 16.7 176 1-181 36-235 (236)
4 PTZ00203 cathepsin L protease; 100.0 7E-50 1.5E-54 334.5 18.4 178 1-184 158-340 (348)
5 cd02698 Peptidase_C1A_Cathepsi 100.0 9.7E-50 2.1E-54 319.6 18.3 174 1-183 39-237 (239)
6 cd02248 Peptidase_C1A Peptidas 100.0 1.4E-49 3.1E-54 311.9 17.5 175 1-182 32-210 (210)
7 KOG1543|consensus 100.0 1.3E-48 2.9E-53 324.5 14.9 175 1-182 142-321 (325)
8 PTZ00021 falcipain-2; Provisio 100.0 3E-48 6.5E-53 334.4 16.6 175 1-185 298-489 (489)
9 PTZ00200 cysteine proteinase; 100.0 2E-47 4.4E-52 327.7 16.7 173 1-184 267-445 (448)
10 PF00112 Peptidase_C1: Papain 100.0 8.3E-47 1.8E-51 296.8 14.9 176 1-183 34-219 (219)
11 PTZ00049 cathepsin C-like prot 100.0 1.6E-46 3.6E-51 330.8 17.5 181 1-186 417-678 (693)
12 PTZ00364 dipeptidyl-peptidase 100.0 4.7E-46 1E-50 324.1 17.5 182 1-184 243-459 (548)
13 PTZ00462 Serine-repeat antigen 100.0 2.4E-41 5.2E-46 305.8 17.0 182 1-186 564-783 (1004)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 7.3E-40 1.6E-44 257.8 15.7 165 1-170 29-213 (223)
15 smart00645 Pept_C1 Papain fami 100.0 1.1E-39 2.4E-44 249.8 13.8 135 1-180 33-171 (174)
16 KOG1544|consensus 100.0 4.8E-38 1E-42 253.4 7.7 177 4-182 246-458 (470)
17 COG4870 Cysteine protease [Pos 99.7 2.1E-17 4.5E-22 136.3 9.4 132 33-174 168-318 (372)
18 cd00585 Peptidase_C1B Peptidas 99.7 2.2E-17 4.8E-22 141.7 9.4 83 87-169 293-399 (437)
19 PF03051 Peptidase_C1_2: Pepti 99.0 2.5E-09 5.4E-14 92.3 8.9 79 89-169 300-400 (438)
20 COG3579 PepC Aminopeptidase C 97.6 6.3E-05 1.4E-09 62.4 3.3 82 87-168 296-401 (444)
21 PF13529 Peptidase_C39_2: Pept 96.3 0.0067 1.5E-07 43.5 4.4 55 87-154 88-144 (144)
22 PF09778 Guanylate_cyc_2: Guan 92.9 0.59 1.3E-05 36.9 7.3 64 87-152 112-180 (212)
23 PF05543 Peptidase_C47: Stapho 91.0 1.6 3.4E-05 33.3 7.5 67 87-172 90-157 (175)
24 PF14399 Transpep_BrtH: NlpC/p 90.9 0.57 1.2E-05 38.6 5.5 55 87-150 77-131 (317)
25 KOG4128|consensus 88.1 0.044 9.5E-07 45.8 -3.1 95 87-185 305-426 (457)
26 COG4990 Uncharacterized protei 87.5 1.5 3.2E-05 33.7 5.0 47 87-155 122-168 (195)
27 cd02549 Peptidase_C39A A sub-f 77.1 9.3 0.0002 27.1 5.8 45 91-154 70-114 (141)
28 cd00044 CysPc Calpains, domain 74.2 5.7 0.00012 33.0 4.5 28 129-156 234-263 (315)
29 PF12385 Peptidase_C70: Papain 69.6 16 0.00034 27.6 5.4 39 87-142 97-135 (166)
30 PF01640 Peptidase_C10: Peptid 51.0 90 0.002 23.9 7.0 53 88-165 140-192 (192)
31 cd00585 Peptidase_C1B Peptidas 46.3 19 0.00041 31.6 2.8 30 28-58 130-159 (437)
32 smart00230 CysPc Calpain-like 42.7 60 0.0013 27.1 5.2 27 130-156 227-255 (318)
33 KOG4621|consensus 38.9 1.1E+02 0.0023 22.4 5.2 77 87-168 58-144 (167)
34 PF03051 Peptidase_C1_2: Pepti 33.1 46 0.001 29.3 3.1 55 3-58 77-160 (438)
35 PF07157 DNA_circ_N: DNA circu 24.2 1.2E+02 0.0027 20.6 3.4 46 52-101 30-79 (93)
36 PF00648 Peptidase_C2: Calpain 23.4 69 0.0015 26.2 2.4 28 129-156 212-243 (298)
37 smart00276 GLECT Galectin. Gal 21.0 56 0.0012 23.2 1.3 13 148-160 51-64 (128)
No 1
>KOG1542|consensus
Probab=100.00 E-value=3.1e-54 Score=349.67 Aligned_cols=180 Identities=42% Similarity=0.856 Sum_probs=172.3
Q ss_pred CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHH-HHhCcccccccccccCCCCCcc-cccCCCCcceeee
Q psy274 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEY-THQAGLESEKDYPYRNGNGEKF-KCAYDKSKVKLFT 78 (187)
Q Consensus 1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~-~~~~Gi~~e~~yPY~~~~~~~~-~C~~~~~~~~~~i 78 (187)
++|++++|++++.++||||||+||+..++||+||. +.+||+| ++..|+.+|.+|||. +..+ .|........+.|
T Consensus 189 ~vEga~~i~~g~LvsLSEQeLvDCD~~d~gC~GGl-~~nA~~~~~~~gGL~~E~dYPY~---g~~~~~C~~~~~~~~v~I 264 (372)
T KOG1542|consen 189 AVEGAWAIATGKLVSLSEQELVDCDSCDNGCNGGL-MDNAFKYIKKAGGLEKEKDYPYT---GKKGNQCHFDKSKIVVSI 264 (372)
T ss_pred hhhhHHHhhcCcccccchhhhhcccCcCCcCCCCC-hhHHHHHHHHhCCccccccCCcc---ccCCCccccchhhceEEE
Confidence 58999999999999999999999999899999999 9999999 888999999999999 8877 9999999999999
Q ss_pred ccceeEeC-ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeecC-CccEEEEEccCCC
Q psy274 79 GKDFLYFN-GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQD-DIPYWLARNSWGP 156 (187)
Q Consensus 79 ~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~-g~~ywivkNSWG~ 156 (187)
. +|..++ ++++|.+.|.+.|||+|+|++..+|.|.+||..+.+..|++..++|+|+|||||.++ .++|||||||||+
T Consensus 265 ~-~f~~l~~nE~~ia~wLv~~GPi~vgiNa~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~ 343 (372)
T KOG1542|consen 265 K-DFSMLSNNEDQIAAWLVTFGPLSVGINAKPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGT 343 (372)
T ss_pred e-ccEecCCCHHHHHHHHHhcCCeEEEEchHHHHHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccc
Confidence 9 999999 999999999999999999999999999999999877889998899999999999888 9999999999999
Q ss_pred CCCCCcEEEEEecCCeecccceeeEEEEE
Q psy274 157 IGPDEGFFKIERGNNACGIETIAGYATID 185 (187)
Q Consensus 157 ~WG~~Gy~~i~~~~n~cgi~~~~~~~~~~ 185 (187)
+||++||+||.||.|.|||++.+..|.++
T Consensus 344 ~WGE~GY~~l~RG~N~CGi~~mvss~~v~ 372 (372)
T KOG1542|consen 344 SWGEKGYYKLCRGSNACGIADMVSSAAVN 372 (372)
T ss_pred cccccceEEEeccccccccccchhhhhcC
Confidence 99999999999999999999999888653
No 2
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=2.1e-50 Score=324.18 Aligned_cols=176 Identities=29% Similarity=0.574 Sum_probs=153.2
Q ss_pred CchhhHHHHhCC------CccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCC-CcccccCCC-C
Q psy274 1 MLEGQYAIKTGK------LVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNG-EKFKCAYDK-S 72 (187)
Q Consensus 1 a~E~~~~i~~~~------~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~-~~~~C~~~~-~ 72 (187)
+||++++|++++ .+.||+|+|+||+..+.||+||+ +..|++|++++|+++|++|||. . ..+.|.... .
T Consensus 37 ~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~~~GC~GG~-~~~a~~~~~~~Gi~~e~~yPY~---~~~~~~C~~~~~~ 112 (243)
T cd02621 37 ALEARIMIASNKTDPLGQQPILSPQHVLSCSQYSQGCDGGF-PFLVGKFAEDFGIVTEDYFPYT---ADDDRPCKASPSE 112 (243)
T ss_pred HHHHHHHHHhCCCCccccCcccCHHHhhhhcCCCCCCCCCC-HHHHHHHHHhcCcCCCceeCCC---CCCCCCCCCCccc
Confidence 589999999887 79999999999997788999999 9999999999999999999999 5 677887654 3
Q ss_pred cceeeeccceeEe------CChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCC----CCC--------CcccEE
Q psy274 73 KVKLFTGKDFLYF------NGSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEI----CSP--------NAIGHA 133 (187)
Q Consensus 73 ~~~~~i~~~~~~i------~~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~----~~~--------~~~~Ha 133 (187)
...+++. .|..+ .++++||++|+++|||+++|++ ++|++|++|||+. +. |+. ..++|+
T Consensus 113 ~~~~~~~-~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~~~F~~Y~~GIy~~--~~~~~~C~~~~~~~~~~~~~~Ha 189 (243)
T cd02621 113 CRRYYFS-DYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHH--TDNDEVSDGDNDNFNPFELTNHA 189 (243)
T ss_pred ccccccc-ceeEcccccccCCHHHHHHHHHHcCCEEEEEEecccccccCCeEECc--CCcccccccccccccCcccCCeE
Confidence 3444555 55544 3789999999999999999999 8999999999987 32 643 247999
Q ss_pred EEEEEEeecC--CccEEEEEccCCCCCCCCcEEEEEecCCeecccceeeEEE
Q psy274 134 VLLVGYGKQD--DIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYAT 183 (187)
Q Consensus 134 v~iVGyg~~~--g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~ 183 (187)
|+|||||+++ +.+|||||||||++||++|||||+|+.|.|||+++++++.
T Consensus 190 V~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~~~~~~ 241 (243)
T cd02621 190 VLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAVFAY 241 (243)
T ss_pred EEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCcccCcccceEeec
Confidence 9999999876 8999999999999999999999999999999999998864
No 3
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=3.3e-50 Score=321.79 Aligned_cols=176 Identities=25% Similarity=0.458 Sum_probs=150.0
Q ss_pred CchhhHHHHhC--CCccCCHHHHhhhcCC-CCCCCCCccchhhHHHHHhCcccccccccccCCCCC--------------
Q psy274 1 MLEGQYAIKTG--KLVEFSKSQLVECAKQ-CSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGE-------------- 63 (187)
Q Consensus 1 a~E~~~~i~~~--~~~~lS~q~l~dc~~~-~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~-------------- 63 (187)
+||++++|+++ +.+.||+|+|+||+.. +.||+||+ +..||+|++++|+++|++|||......
T Consensus 36 ~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~-~~~a~~~i~~~G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~ 114 (236)
T cd02620 36 AFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGY-PDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPY 114 (236)
T ss_pred HHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCC-HHHHHHHHHhcCCCcCCEecCcCCCCccCCCCCCCCCCCCC
Confidence 58999999988 7899999999999987 88999999 999999998999999999999832211
Q ss_pred -cccccCCCC----cceeeeccceeEeC-ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEE
Q psy274 64 -KFKCAYDKS----KVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLL 136 (187)
Q Consensus 64 -~~~C~~~~~----~~~~~i~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~i 136 (187)
...|..... ...+++. .+..+. ++++||++|+++|||+++|.+ ++|+.|++|||+. .|+...++|||+|
T Consensus 115 ~~~~C~~~~~~~~~~~~~~~~-~~~~~~~~~~~ik~~l~~~GPv~v~i~~~~~f~~Y~~Giy~~---~~~~~~~~HaV~i 190 (236)
T cd02620 115 CTPKCQDGCEKTYEEDKHKGK-SAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLYYKSGVYQH---TSGKQLGGHAVKI 190 (236)
T ss_pred CCCCCCcCCccccceeeeeec-ceeeeCCHHHHHHHHHHHCCCeEEEEEechhhhhcCCcEEee---cCCCCcCCeEEEE
Confidence 113432221 2234555 666665 679999999999999999999 8999999999986 4666568999999
Q ss_pred EEEeecCCccEEEEEccCCCCCCCCcEEEEEecCCeecccceeeE
Q psy274 137 VGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGY 181 (187)
Q Consensus 137 VGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~ 181 (187)
||||++++++|||||||||++||++|||||+|+.|.|||++.++.
T Consensus 191 VGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~~ 235 (236)
T cd02620 191 IGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVA 235 (236)
T ss_pred EEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccCcccccccceec
Confidence 999998999999999999999999999999999999999999875
No 4
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=7e-50 Score=334.53 Aligned_cols=178 Identities=30% Similarity=0.595 Sum_probs=154.7
Q ss_pred CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHh---CcccccccccccCCCCCcccccCCCC-ccee
Q psy274 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ---AGLESEKDYPYRNGNGEKFKCAYDKS-KVKL 76 (187)
Q Consensus 1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~---~Gi~~e~~yPY~~~~~~~~~C~~~~~-~~~~ 76 (187)
++|++++|++++.++||+|+|+||+..+.||+||+ +..||+|+++ .|+++|++|||....+..+.|..... ....
T Consensus 158 aiEs~~~i~~~~~~~LSeQqLvdC~~~~~GC~GG~-~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~ 236 (348)
T PTZ00203 158 NIESQWAVAGHKLVRLSEQQLVSCDHVDNGCGGGL-MLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGA 236 (348)
T ss_pred HHHHHHHHhcCCCccCCHHHHHhccCCCCCCCCCC-HHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccce
Confidence 58999999999999999999999998788999999 9999999653 46899999999933233336864332 2346
Q ss_pred eeccceeEeC-ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274 77 FTGKDFLYFN-GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG 155 (187)
Q Consensus 77 ~i~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG 155 (187)
++. +|..+. +++.|+++|++.|||+++|++++|++|++|||.. |.....+|+|+|||||+++|.+|||||||||
T Consensus 237 ~i~-~~~~i~~~e~~~~~~l~~~GPv~v~i~a~~f~~Y~~GIy~~----c~~~~~nHaVliVGYG~~~g~~YWiikNSWG 311 (348)
T PTZ00203 237 RID-GYVSMESSERVMAAWLAKNGPISIAVDASSFMSYHSGVLTS----CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWG 311 (348)
T ss_pred Eec-ceeecCcCHHHHHHHHHhCCCEEEEEEhhhhcCccCceeec----cCCCCCCeEEEEEEEecCCCceEEEEEcCCC
Confidence 788 888887 7889999999999999999998899999999964 7655679999999999988999999999999
Q ss_pred CCCCCCcEEEEEecCCeecccceeeEEEE
Q psy274 156 PIGPDEGFFKIERGNNACGIETIAGYATI 184 (187)
Q Consensus 156 ~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~ 184 (187)
++||++|||||+|+.|.|||+++++.+.+
T Consensus 312 ~~WGe~GY~ri~rg~n~Cgi~~~~~~~~~ 340 (348)
T PTZ00203 312 EDWGEKGYVRVTMGVNACLLTGYPVSVHV 340 (348)
T ss_pred CCcCcCceEEEEcCCCcccccceEEEEec
Confidence 99999999999999999999999998865
No 5
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=9.7e-50 Score=319.61 Aligned_cols=174 Identities=27% Similarity=0.513 Sum_probs=151.3
Q ss_pred CchhhHHHHhC---CCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCC-------
Q psy274 1 MLEGQYAIKTG---KLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYD------- 70 (187)
Q Consensus 1 a~E~~~~i~~~---~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~------- 70 (187)
+||++++|+++ +.+.||+|||+||+. +.||+||+ +..||+|++++|+++|++|||. +....|...
T Consensus 39 aies~~~i~~~~~~~~~~lS~Q~lldC~~-~~gC~GG~-~~~a~~~~~~~Gl~~e~~yPY~---~~~~~C~~~~~~~~c~ 113 (239)
T cd02698 39 ALADRINIARKGAWPSVYLSVQVVIDCAG-GGSCHGGD-PGGVYEYAHKHGIPDETCNPYQ---AKDGECNPFNRCGTCN 113 (239)
T ss_pred HHHHHHHHHHCCCCCCcccCHHHHHhCCC-CCCccCcC-HHHHHHHHHHcCcCCCCeeCCc---CCCCCCcCCCCCCCcc
Confidence 58999999876 368999999999998 78999999 9999999988999999999998 555555421
Q ss_pred --------CCcceeeeccceeEeCChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEEEEEee
Q psy274 71 --------KSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGK 141 (187)
Q Consensus 71 --------~~~~~~~i~~~~~~i~~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~ 141 (187)
+....++++ +|..+.+.++||++|+++|||+++|.+ ++|+.|++|||+. +.|. ..++|+|+|||||+
T Consensus 114 ~~~~c~~~~~~~~~~i~-~~~~~~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~GIy~~--~~~~-~~~~HaV~IVGyG~ 189 (239)
T cd02698 114 PFGECFAIKNYTLYFVS-DYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKE--YVQD-PLINHIISVAGWGV 189 (239)
T ss_pred cCcccccccccceEEee-eceecCCHHHHHHHHHHcCCEEEEEEecccccccCCeEEcc--CCCC-CcCCeEEEEEEEEe
Confidence 112345677 787777788999999999999999999 8999999999987 4454 45899999999998
Q ss_pred cC-CccEEEEEccCCCCCCCCcEEEEEecC-----CeecccceeeEEE
Q psy274 142 QD-DIPYWLARNSWGPIGPDEGFFKIERGN-----NACGIETIAGYAT 183 (187)
Q Consensus 142 ~~-g~~ywivkNSWG~~WG~~Gy~~i~~~~-----n~cgi~~~~~~~~ 183 (187)
++ +++|||||||||++||++|||||+|+. |+|+||+.++++.
T Consensus 190 ~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~~~~ 237 (239)
T cd02698 190 DENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCAWAD 237 (239)
T ss_pred cCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceEEEe
Confidence 76 999999999999999999999999999 9999999999885
No 6
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=1.4e-49 Score=311.89 Aligned_cols=175 Identities=42% Similarity=0.840 Sum_probs=161.3
Q ss_pred CchhhHHHHhCCCccCCHHHHhhhcCC-CCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCCCcceeeec
Q psy274 1 MLEGQYAIKTGKLVEFSKSQLVECAKQ-CSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTG 79 (187)
Q Consensus 1 a~E~~~~i~~~~~~~lS~q~l~dc~~~-~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~ 79 (187)
+||++++++++...+||+|+|++|... +.+|+||. +..||+++++.|+++|++|||. .....|........+++.
T Consensus 32 ~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~-~~~a~~~~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~i~ 107 (210)
T cd02248 32 ALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGN-PDNAFEYVKNGGLASESDYPYT---GKDGTCKYNSSKVGAKIT 107 (210)
T ss_pred HHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCC-HHHhHHHHHHCCcCccccCCcc---CCCCCccCCCCcccEEEe
Confidence 589999999999999999999999986 88999999 9999999999999999999999 777889877767889999
Q ss_pred cceeEeC--ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCCC
Q psy274 80 KDFLYFN--GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGP 156 (187)
Q Consensus 80 ~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~ 156 (187)
+|..+. +.++||++|+++|||+++|.+ ++|+.|++|||.. +.|....++|+|+|||||++.+.+|||||||||+
T Consensus 108 -~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~--~~~~~~~~~Hav~iVGy~~~~~~~ywiv~NSWG~ 184 (210)
T cd02248 108 -GYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSG--PCCSNTNLNHAVLLVGYGTENGVDYWIVKNSWGT 184 (210)
T ss_pred -eEEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCceeC--CCCCCCcCCEEEEEEEEeecCCceEEEEEcCCCC
Confidence 999998 589999999999999999999 8999999999988 5564556899999999999889999999999999
Q ss_pred CCCCCcEEEEEecCCeecccceeeEE
Q psy274 157 IGPDEGFFKIERGNNACGIETIAGYA 182 (187)
Q Consensus 157 ~WG~~Gy~~i~~~~n~cgi~~~~~~~ 182 (187)
.||++|||||+|+.|.|||++.+.+|
T Consensus 185 ~WG~~Gy~~i~~~~~~cgi~~~~~~~ 210 (210)
T cd02248 185 SWGEKGYIRIARGSNLCGIASYASYP 210 (210)
T ss_pred ccccCcEEEEEcCCCccCceeeeecC
Confidence 99999999999999999999887764
No 7
>KOG1543|consensus
Probab=100.00 E-value=1.3e-48 Score=324.52 Aligned_cols=175 Identities=34% Similarity=0.687 Sum_probs=160.8
Q ss_pred CchhhHHHHhC-CCccCCHHHHhhhcCC-CCCCCCCccchhhHHHHHhCcccc-cccccccCCCCCcccccCCCCcceee
Q psy274 1 MLEGQYAIKTG-KLVEFSKSQLVECAKQ-CSGCGGCDGLEQPIEYTHQAGLES-EKDYPYRNGNGEKFKCAYDKSKVKLF 77 (187)
Q Consensus 1 a~E~~~~i~~~-~~~~lS~q~l~dc~~~-~~gC~gG~~~~~a~~~~~~~Gi~~-e~~yPY~~~~~~~~~C~~~~~~~~~~ 77 (187)
|||++++|+++ ..+.||+|||+||+.. ++||+||. +..||+|++++|+++ +.+|||. +....|........+.
T Consensus 142 aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~-~~~A~~yi~~~G~~t~~~~Ypy~---~~~~~C~~~~~~~~~~ 217 (325)
T KOG1543|consen 142 ALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGE-PKNAFKYIKKNGGVTECENYPYI---GKDGTCKSNKKDKTVT 217 (325)
T ss_pred HHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCC-HHHHHHHHHHhCCCCCCcCCCCc---CCCCCccCCCccceeE
Confidence 68999999999 8999999999999996 89999999 999999988888888 9999999 7788999887777788
Q ss_pred eccceeEeC-ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274 78 TGKDFLYFN-GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG 155 (187)
Q Consensus 78 i~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG 155 (187)
+. ++..++ ++++|+++|+.+|||+++|.+ .+|+.|++|||.. +.|....++|||+|||||+.++.+|||||||||
T Consensus 218 ~~-~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F~~Y~~GVy~~--~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG 294 (325)
T KOG1543|consen 218 IK-GFYNVPANEEAIAEAVAKNGPVSVAIDAYEDFSLYKGGVYAE--EKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWG 294 (325)
T ss_pred ee-eeeecCcCHHHHHHHHHhcCCeEEEEeehhhhhhccCceEeC--CCCCCCCCCceEEEEEEcCCCCceeEEEEcCCC
Confidence 88 888777 999999999999999999999 9999999999999 455443589999999999966789999999999
Q ss_pred CCCCCCcEEEEEecCCeecccceeeEE
Q psy274 156 PIGPDEGFFKIERGNNACGIETIAGYA 182 (187)
Q Consensus 156 ~~WG~~Gy~~i~~~~n~cgi~~~~~~~ 182 (187)
+.||++|||||.|+.|.|+|++.+.++
T Consensus 295 ~~WGe~Gy~ri~r~~~~~~I~~~~~~~ 321 (325)
T KOG1543|consen 295 TDWGEKGYFRIARGVNKCGIASEASYG 321 (325)
T ss_pred CCcccCceEEEecCCCchhhhcccccC
Confidence 999999999999999999999998883
No 8
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=3e-48 Score=334.39 Aligned_cols=175 Identities=33% Similarity=0.594 Sum_probs=156.2
Q ss_pred CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHH-HhCcccccccccccCCCCC-cccccCCCCcceeee
Q psy274 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYT-HQAGLESEKDYPYRNGNGE-KFKCAYDKSKVKLFT 78 (187)
Q Consensus 1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~-~~~Gi~~e~~yPY~~~~~~-~~~C~~~~~~~~~~i 78 (187)
|+|++++|++++.++||+|+|+||+..+.||+||+ +..||+|+ +..|+++|++|||. +. ++.|........+++
T Consensus 298 alEs~~~I~~g~~v~LSeQqLVDCs~~n~GC~GG~-~~~Af~yi~~~gGl~tE~~YPY~---~~~~~~C~~~~~~~~~~i 373 (489)
T PTZ00021 298 VVESQYAIRKNELVSLSEQELVDCSFKNNGCYGGL-IPNAFEDMIELGGLCSEDDYPYV---SDTPELCNIDRCKEKYKI 373 (489)
T ss_pred HHHHHHHHHcCCCcccCHHHHhhhccCCCCCCCcc-hHhhhhhhhhccccCcccccCcc---CCCCCcccccccccccee
Confidence 58999999999999999999999998789999999 99999995 56699999999999 65 478976555566889
Q ss_pred ccceeEeCChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCC----------ccE
Q psy274 79 GKDFLYFNGSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDD----------IPY 147 (187)
Q Consensus 79 ~~~~~~i~~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g----------~~y 147 (187)
. +|..++ ..+|+++|+..|||+++|.+ ++|++|++|||.. .|+. .++|||+|||||++++ .+|
T Consensus 374 ~-~y~~i~-~~~lk~al~~~GPVsv~i~a~~~f~~YkgGIy~~---~C~~-~~nHAVlIVGYG~e~~~~~~~~~~~~~~Y 447 (489)
T PTZ00021 374 K-SYVSIP-EDKFKEAIRFLGPISVSIAVSDDFAFYKGGIFDG---ECGE-EPNHAVILVGYGMEEIYNSDTKKMEKRYY 447 (489)
T ss_pred e-eEEEec-HHHHHHHHHhcCCeEEEEEeecccccCCCCcCCC---CCCC-ccceEEEEEEecCcCCcccccccCCCCCE
Confidence 8 998885 67899999999999999999 8999999999976 6876 4799999999997642 479
Q ss_pred EEEEccCCCCCCCCcEEEEEecC----CeecccceeeEEEEE
Q psy274 148 WLARNSWGPIGPDEGFFKIERGN----NACGIETIAGYATID 185 (187)
Q Consensus 148 wivkNSWG~~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~~ 185 (187)
||||||||++||++|||||+|+. |.|||.+.+.+|++|
T Consensus 448 WIVKNSWGt~WGE~GY~rI~r~~~g~~n~CGI~t~a~yP~~~ 489 (489)
T PTZ00021 448 YIIKNSWGESWGEKGFIRIETDENGLMKTCSLGTEAYVPLIE 489 (489)
T ss_pred EEEECCCCCCcccCeEEEEEcCCCCCCCCCCCcccceeEecC
Confidence 99999999999999999999986 589999999999875
No 9
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=2e-47 Score=327.73 Aligned_cols=173 Identities=30% Similarity=0.583 Sum_probs=151.9
Q ss_pred CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCCCcceeeecc
Q psy274 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGK 80 (187)
Q Consensus 1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~ 80 (187)
++|++++|+++..++||+|||+||+..+.||+||+ +..||+|++++|+++|++|||. +..+.|..... ...+|.
T Consensus 267 aiEs~~~i~~~~~~~LSeQqLvDC~~~~~GC~GG~-~~~A~~yi~~~Gi~~e~~YPY~---~~~~~C~~~~~-~~~~i~- 340 (448)
T PTZ00200 267 SVESLYKIYRDKSVDLSEQELVNCDTKSQGCSGGY-PDTALEYVKNKGLSSSSDVPYL---AKDGKCVVSST-KKVYID- 340 (448)
T ss_pred HHHHHHHHhcCCCeecCHHHHhhccCccCCCCCCc-HHHHHHHHhhcCccccccCCCC---CCCCCCcCCCC-CeeEec-
Confidence 58999999999999999999999997789999999 9999999988999999999999 88889986543 345688
Q ss_pred ceeEeCChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEEEEEee--cCCccEEEEEccCCCC
Q psy274 81 DFLYFNGSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGK--QDDIPYWLARNSWGPI 157 (187)
Q Consensus 81 ~~~~i~~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~--~~g~~ywivkNSWG~~ 157 (187)
+|..+...+.++++| ..|||+++|.+ .+|+.|++|||.. +|+.. ++|||+|||||. ++|.+|||||||||++
T Consensus 341 ~y~~~~~~~~l~~~l-~~GPV~v~i~~~~~f~~Yk~GIy~~---~C~~~-~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~ 415 (448)
T PTZ00200 341 SYLVAKGKDVLNKSL-VISPTVVYIAVSRELLKYKSGVYNG---ECGKS-LNHAVLLVGEGYDEKTKKRYWIIKNSWGTD 415 (448)
T ss_pred ceEecCHHHHHHHHH-hcCCEEEEeecccccccCCCCcccc---ccCCC-CcEEEEEEEecccCCCCCceEEEEcCCCCC
Confidence 887665445555555 57999999999 8999999999976 68764 899999999994 4688999999999999
Q ss_pred CCCCcEEEEEec---CCeecccceeeEEEE
Q psy274 158 GPDEGFFKIERG---NNACGIETIAGYATI 184 (187)
Q Consensus 158 WG~~Gy~~i~~~---~n~cgi~~~~~~~~~ 184 (187)
||++|||||+|+ .|.|||++.+.+|++
T Consensus 416 WGe~GY~ri~r~~~g~n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 416 WGENGYMRLERTNEGTDKCGILTVGLTPVF 445 (448)
T ss_pred cccCeeEEEEeCCCCCCcCCccccceeeEE
Confidence 999999999996 489999999999987
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=8.3e-47 Score=296.82 Aligned_cols=176 Identities=34% Similarity=0.646 Sum_probs=156.4
Q ss_pred CchhhHHHHh-CCCccCCHHHHhhhcC-CCCCCCCCccchhhHHHHHh-CcccccccccccCCCCCc-ccccCCCCcc-e
Q psy274 1 MLEGQYAIKT-GKLVEFSKSQLVECAK-QCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEK-FKCAYDKSKV-K 75 (187)
Q Consensus 1 a~E~~~~i~~-~~~~~lS~q~l~dc~~-~~~gC~gG~~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~-~~C~~~~~~~-~ 75 (187)
++|++++++. ...++||+|+|++|.. .+.+|+||+ +.+|++++++ .|+++|++|||. ... +.|....... .
T Consensus 34 ~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~-~~~a~~~~~~~~Gi~~e~~~pY~---~~~~~~c~~~~~~~~~ 109 (219)
T PF00112_consen 34 ALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGS-PFDALKYIKNNNGIVTEEDYPYN---GNENPTCKSKKSNSYY 109 (219)
T ss_dssp HHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBE-HHHHHHHHHHHTSBEBTTTS--S---SSSSCSSCHSGGGEEE
T ss_pred ceeccccccccccccccccccccccccccccccccCc-ccccceeecccCccccccccccc---cccccccccccccccc
Confidence 4899999999 7899999999999998 578999999 9999999777 999999999999 666 7898765443 4
Q ss_pred eeeccceeEeC--ChHHHHHHHHhCCCEEEEEEC-c-cccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEE
Q psy274 76 LFTGKDFLYFN--GSETMKKILYKYGPLSVGLNG-H-LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLAR 151 (187)
Q Consensus 76 ~~i~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~-~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivk 151 (187)
.++. .|..+. ++++||++|+++|||+++|.+ + +|+.|++|||.. +.|+...++|+|+|||||++.+++|||||
T Consensus 110 ~~i~-~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~--~~~~~~~~~Hav~iVGy~~~~~~~~wiv~ 186 (219)
T PF00112_consen 110 VKIK-GYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDP--PDCSNESGGHAVLIVGYDDENGKGYWIVK 186 (219)
T ss_dssp BEES-EEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECS--TSSSSSSEEEEEEEEEEEEETTEEEEEEE
T ss_pred cccc-ccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeec--cccccccccccccccccccccceeeEeee
Confidence 7888 898888 589999999999999999999 7 699999999998 67777789999999999999999999999
Q ss_pred ccCCCCCCCCcEEEEEecCC-eecccceeeEEE
Q psy274 152 NSWGPIGPDEGFFKIERGNN-ACGIETIAGYAT 183 (187)
Q Consensus 152 NSWG~~WG~~Gy~~i~~~~n-~cgi~~~~~~~~ 183 (187)
||||++||++|||||+|+.+ .|||++++++|+
T Consensus 187 NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 187 NSWGTDWGDNGYFRISYDYNNECGIESQAVYPI 219 (219)
T ss_dssp -SBTTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred hhhCCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence 99999999999999999987 999999999985
No 11
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=1.6e-46 Score=330.79 Aligned_cols=181 Identities=27% Similarity=0.522 Sum_probs=150.4
Q ss_pred CchhhHHHHhCC----------CccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCC
Q psy274 1 MLEGQYAIKTGK----------LVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYD 70 (187)
Q Consensus 1 a~E~~~~i~~~~----------~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~ 70 (187)
+||+|++|++++ ...||+|+|+||+..+.||+||+ +..|++|+++.||++|++|||. +..+.|...
T Consensus 417 alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~nqGC~GG~-~~~A~kya~~~GI~tEscYPY~---a~~g~C~~~ 492 (693)
T PTZ00049 417 AFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFYDQGCNGGF-PYLVSKMAKLQGIPLDKVFPYT---ATEQTCPYQ 492 (693)
T ss_pred HHHHHHHHHhccccccccccccccCcCHHHhcccCCCCCCcCCCc-HHHHHHHHHHCCCCcCCccCCc---CCCCCCCCC
Confidence 589999999753 13799999999998789999999 9999999988999999999998 666667532
Q ss_pred CC---------------------------------------cceeeeccceeEeC---------ChHHHHHHHHhCCCEE
Q psy274 71 KS---------------------------------------KVKLFTGKDFLYFN---------GSETMKKILYKYGPLS 102 (187)
Q Consensus 71 ~~---------------------------------------~~~~~i~~~~~~i~---------~~~~ik~~l~~~gPV~ 102 (187)
.. ..+++++ +|..+. ++++||++|+.+|||+
T Consensus 493 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~y~k-~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVs 571 (693)
T PTZ00049 493 VDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPARWYAK-DYNYIGGCYGCNQCNGEKIMMNEIYRNGPIV 571 (693)
T ss_pred CCCccccccccccccccccccccccccccccccccccccccccceeee-eeEEecccccccCCCCHHHHHHHHHhcCCEE
Confidence 11 1223455 666552 5789999999999999
Q ss_pred EEEEC-ccccccCCceeeCCC----CCCCCC--------------cccEEEEEEEEeec--CCc--cEEEEEccCCCCCC
Q psy274 103 VGLNG-HLIHFYNGTPIKKND----EICSPN--------------AIGHAVLLVGYGKQ--DDI--PYWLARNSWGPIGP 159 (187)
Q Consensus 103 v~~~~-~~f~~y~~giy~~~~----~~~~~~--------------~~~Hav~iVGyg~~--~g~--~ywivkNSWG~~WG 159 (187)
++|.+ ++|++|++|||+..+ ..|+.. ..+|||+|||||++ +|+ +|||||||||+.||
T Consensus 572 VsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WG 651 (693)
T PTZ00049 572 ASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWG 651 (693)
T ss_pred EEEEechhhhcCCCccccCcccccccccCCccccccccccccccccCceEEEEEEeccccCCCcccCEEEEECCCCCCcc
Confidence 99999 899999999998621 136421 36999999999964 454 79999999999999
Q ss_pred CCcEEEEEecCCeecccceeeEEEEEe
Q psy274 160 DEGFFKIERGNNACGIETIAGYATIDV 186 (187)
Q Consensus 160 ~~Gy~~i~~~~n~cgi~~~~~~~~~~~ 186 (187)
++|||||+|+.|.||||++++++..|+
T Consensus 652 enGYfKI~RG~N~CGIEs~a~~~~pd~ 678 (693)
T PTZ00049 652 KEGYFKIIRGKNFSGIESQSLFIEPDF 678 (693)
T ss_pred cCceEEEEcCCCccCCccceeEEeeec
Confidence 999999999999999999999999986
No 12
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=4.7e-46 Score=324.10 Aligned_cols=182 Identities=20% Similarity=0.405 Sum_probs=149.5
Q ss_pred CchhhHHHHhC------CCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccc--cccCCCCCcccccCCCC
Q psy274 1 MLEGQYAIKTG------KLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDY--PYRNGNGEKFKCAYDKS 72 (187)
Q Consensus 1 a~E~~~~i~~~------~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~y--PY~~~~~~~~~C~~~~~ 72 (187)
|||++++|+++ +.+.||+|+|+||+..++||+||+ +..|++|++++|+++|++| ||....+..+.|.....
T Consensus 243 alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~n~GCdGG~-p~~A~~yi~~~GI~tE~dY~~PY~~~dg~~~~Ck~~~~ 321 (548)
T PTZ00364 243 AMMARVMVASNRTDPLGQQTFLSARHVLDCSQYGQGCAGGF-PEEVGKFAETFGILTTDSYYIPYDSGDGVERACKTRRP 321 (548)
T ss_pred HHHHHHHHHhCCCcccCcccCcCHHHHhcccCCCCCCCCCc-HHHHHHHHHhCCcccccccCCCCCCCCCCCCCCCCCcc
Confidence 58999999984 468999999999997789999999 9999999988999999999 99843233346876544
Q ss_pred cceeeeccce------eEeC-ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeC-----CC-CCCC----------CC
Q psy274 73 KVKLFTGKDF------LYFN-GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKK-----ND-EICS----------PN 128 (187)
Q Consensus 73 ~~~~~i~~~~------~~i~-~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~-----~~-~~~~----------~~ 128 (187)
...++++ ++ ..+. ++++||++|+++|||+++|++ ++|+.|++|||.. .. ..|. ..
T Consensus 322 ~~~y~~~-~~~~I~gyy~~~~~e~~I~~eI~~~GPVsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~ 400 (548)
T PTZ00364 322 SRRYYFT-NYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFAS 400 (548)
T ss_pred cceeeee-eeEEecceeecCCcHHHHHHHHHHcCCeEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccc
Confidence 4444444 44 3333 678899999999999999999 8999999999862 00 1111 13
Q ss_pred cccEEEEEEEEee-cCCccEEEEEccCCC--CCCCCcEEEEEecCCeecccceeeEEEE
Q psy274 129 AIGHAVLLVGYGK-QDDIPYWLARNSWGP--IGPDEGFFKIERGNNACGIETIAGYATI 184 (187)
Q Consensus 129 ~~~Hav~iVGyg~-~~g~~ywivkNSWG~--~WG~~Gy~~i~~~~n~cgi~~~~~~~~~ 184 (187)
..+|||+|||||+ ++|.+|||||||||+ +|||+|||||+|+.|+||||+.++.++.
T Consensus 401 ~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYfRI~RG~N~CGIes~~v~~~~ 459 (548)
T PTZ00364 401 NVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIESEVVVMYW 459 (548)
T ss_pred cCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeEEEEcCCCcccccceeeeeee
Confidence 5799999999996 578899999999999 9999999999999999999999997764
No 13
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=305.76 Aligned_cols=182 Identities=21% Similarity=0.385 Sum_probs=146.6
Q ss_pred CchhhHHHHhCCCccCCHHHHhhhcCC--CCCCCCCccchhhHHHHHhC-cccccccccccCCCCCcccccCCCC-----
Q psy274 1 MLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLEQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKS----- 72 (187)
Q Consensus 1 a~E~~~~i~~~~~~~lS~q~l~dc~~~--~~gC~gG~~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~----- 72 (187)
|+|++++|++++.+.||+|+|+||+.. +.||.||+.+..++.|+++. |+++|++|||... ...+.|+....
T Consensus 564 aLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPYt~k-~~~g~Cp~~~~~w~n~ 642 (1004)
T PTZ00462 564 HLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLYNYT-KVGEDCPDEEDHWMNL 642 (1004)
T ss_pred HHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCCccC-CCCCCCCCCccccccc
Confidence 589999999999999999999999864 68999998344556887665 5899999999731 14557864321
Q ss_pred -------------cceeeeccceeEeCC----------hHHHHHHHHhCCCEEEEEECccccccC-CceeeCCCCCCCCC
Q psy274 73 -------------KVKLFTGKDFLYFNG----------SETMKKILYKYGPLSVGLNGHLIHFYN-GTPIKKNDEICSPN 128 (187)
Q Consensus 73 -------------~~~~~i~~~~~~i~~----------~~~ik~~l~~~gPV~v~~~~~~f~~y~-~giy~~~~~~~~~~ 128 (187)
...+.+. +|..+.. ++.||++|+..|||+|+|.+++|+.|. +|||.. ..|+..
T Consensus 643 ~~~~kll~~~~~~~~~i~~k-gY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAsdf~~Y~~sGIyv~--~~Cgs~ 719 (1004)
T PTZ00462 643 LDHGKILNHNKKEPNSLDGK-AYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAENVLGYEFNGKKVQ--NLCGDD 719 (1004)
T ss_pred ccccccccccccccceeecc-ceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEeehHHhhhcCCcccc--CCCCCC
Confidence 0123344 5655541 368999999999999999996688884 899876 579876
Q ss_pred cccEEEEEEEEeec-----CCccEEEEEccCCCCCCCCcEEEEEe-cCCeecccceeeEEEEEe
Q psy274 129 AIGHAVLLVGYGKQ-----DDIPYWLARNSWGPIGPDEGFFKIER-GNNACGIETIAGYATIDV 186 (187)
Q Consensus 129 ~~~Hav~iVGyg~~-----~g~~ywivkNSWG~~WG~~Gy~~i~~-~~n~cgi~~~~~~~~~~~ 186 (187)
.++|||+|||||++ ++++|||||||||+.||++|||||.| +.|.|||.....+|+++|
T Consensus 720 ~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~i~t~~~fn~ 783 (1004)
T PTZ00462 720 TADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIHSVVIFNI 783 (1004)
T ss_pred cCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccchheeeeeEee
Confidence 78999999999964 25789999999999999999999998 689999999999999986
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=7.3e-40 Score=257.77 Aligned_cols=165 Identities=27% Similarity=0.359 Sum_probs=141.9
Q ss_pred CchhhHHHHhC--CCccCCHHHHhhhcCCC-----CCCCCCccchhhHH-HHHhCcccccccccccCCCCCcccccC---
Q psy274 1 MLEGQYAIKTG--KLVEFSKSQLVECAKQC-----SGCGGCDGLEQPIE-YTHQAGLESEKDYPYRNGNGEKFKCAY--- 69 (187)
Q Consensus 1 a~E~~~~i~~~--~~~~lS~q~l~dc~~~~-----~gC~gG~~~~~a~~-~~~~~Gi~~e~~yPY~~~~~~~~~C~~--- 69 (187)
++|++++++.+ +.++||+|+|++|.... .+|.||. +..++. ++++.|+++|++|||. .....|..
T Consensus 29 ~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~-~~~~~~~~~~~~Gi~~e~~~Py~---~~~~~~~~~~~ 104 (223)
T cd02619 29 ALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGG-PLSALLKLVALKGIPPEEDYPYG---AESDGEEPKSE 104 (223)
T ss_pred HHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCc-HHHHHHHHHHHcCCCccccCCCC---CCCCCCCCCCc
Confidence 58999999998 89999999999999763 6999999 999998 7889999999999999 55555542
Q ss_pred -CCCcceeeeccceeEeC--ChHHHHHHHHhCCCEEEEEEC-ccccccCCceee---CCCCCCCCCcccEEEEEEEEeec
Q psy274 70 -DKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIK---KNDEICSPNAIGHAVLLVGYGKQ 142 (187)
Q Consensus 70 -~~~~~~~~i~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~---~~~~~~~~~~~~Hav~iVGyg~~ 142 (187)
......+++. .|..+. ++++||++|+++|||+++|.+ +.|..|++|++. .....+....++|||+|||||++
T Consensus 105 ~~~~~~~~~~~-~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~ 183 (223)
T cd02619 105 AALNAAKVKLK-DYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDN 183 (223)
T ss_pred cchhhcceeec-ceeEeCchhHHHHHHHHHHCCCEEEEEEcccchhcccCccccccccccccCCCccCCeEEEEEeecCC
Confidence 2344667888 998887 579999999999999999999 999999999873 11134556678999999999988
Q ss_pred C--CccEEEEEccCCCCCCCCcEEEEEecC
Q psy274 143 D--DIPYWLARNSWGPIGPDEGFFKIERGN 170 (187)
Q Consensus 143 ~--g~~ywivkNSWG~~WG~~Gy~~i~~~~ 170 (187)
. +++|||||||||+.||++||+||+++.
T Consensus 184 ~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 184 YVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred CCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 6 899999999999999999999999984
No 15
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=1.1e-39 Score=249.83 Aligned_cols=135 Identities=43% Similarity=0.870 Sum_probs=120.5
Q ss_pred CchhhHHHHhCCCccCCHHHHhhhcCC-CCCCCCCccchhhHHHHHhC-cccccccccccCCCCCcccccCCCCcceeee
Q psy274 1 MLEGQYAIKTGKLVEFSKSQLVECAKQ-CSGCGGCDGLEQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFT 78 (187)
Q Consensus 1 a~E~~~~i~~~~~~~lS~q~l~dc~~~-~~gC~gG~~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i 78 (187)
+||+++++++++.++||+|+|++|... +.+|+||+ +..|+++++++ |+++|++|||+ .
T Consensus 33 ~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~-~~~a~~~~~~~~Gi~~e~~~PY~---~---------------- 92 (174)
T smart00645 33 ALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGL-PDNAFEYIKKNGGLETESCYPYT---G---------------- 92 (174)
T ss_pred HHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcC-HHHHHHHHHHcCCcccccccCcc---c----------------
Confidence 589999999999999999999999986 67999999 99999998776 99999999999 3
Q ss_pred ccceeEeCChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeec-CCccEEEEEccCCCC
Q psy274 79 GKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQ-DDIPYWLARNSWGPI 157 (187)
Q Consensus 79 ~~~~~~i~~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~-~g~~ywivkNSWG~~ 157 (187)
++.+.+.+|+.|++|||+. +.|....++|+|+|||||.+ ++++|||||||||+.
T Consensus 93 -----------------------~~~~~~~~f~~Y~~Gi~~~--~~~~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~ 147 (174)
T smart00645 93 -----------------------SVAIDASDFQFYKSGIYDH--PGCGSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTD 147 (174)
T ss_pred -----------------------EEEEEcccccCCcCeEECC--CCCCCCcccEEEEEEEEeecCCCeeEEEEECCCCCC
Confidence 4555556699999999987 56766557999999999987 889999999999999
Q ss_pred CCCCcEEEEEecC-Ceecccceee
Q psy274 158 GPDEGFFKIERGN-NACGIETIAG 180 (187)
Q Consensus 158 WG~~Gy~~i~~~~-n~cgi~~~~~ 180 (187)
||++|||||.|+. |.|+|+....
T Consensus 148 WG~~G~~~i~~~~~~~c~i~~~~~ 171 (174)
T smart00645 148 WGENGYFRIARGKNNECGIEASVA 171 (174)
T ss_pred cccCeEEEEEcCCCCccCceeeee
Confidence 9999999999997 9999977653
No 16
>KOG1544|consensus
Probab=100.00 E-value=4.8e-38 Score=253.37 Aligned_cols=177 Identities=25% Similarity=0.445 Sum_probs=144.1
Q ss_pred hhHHHHhCC--CccCCHHHHhhhcCC-CCCCCCCccchhhHHHHHhCcccccccccccCC-CCCcccccCCCC-------
Q psy274 4 GQYAIKTGK--LVEFSKSQLVECAKQ-CSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG-NGEKFKCAYDKS------- 72 (187)
Q Consensus 4 ~~~~i~~~~--~~~lS~q~l~dc~~~-~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~-~~~~~~C~~~~~------- 72 (187)
.|++|++.. ...||+|+|++|... ..||+||. +..|+=|+++.|++...||||... .+..+.|.....
T Consensus 246 DRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~-lDRAWWYlRKrGvVsdhCYP~~~dQ~~~~~~C~m~sR~~grgkR 324 (470)
T KOG1544|consen 246 DRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGR-LDRAWWYLRKRGVVSDHCYPFSGDQAGPAPPCMMHSRAMGRGKR 324 (470)
T ss_pred ceeEEeeccccccccChHHhcchhhhhhccCccCc-ccchheeeecccccccccccccCCCCCCCCCceeeccccCcccc
Confidence 456666543 688999999999876 79999999 999999999999999999999842 234444532221
Q ss_pred -------------cceeeeccceeEeC-ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCC-----CcccE
Q psy274 73 -------------KVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSP-----NAIGH 132 (187)
Q Consensus 73 -------------~~~~~i~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~-----~~~~H 132 (187)
...++++ .-++|+ ++++||++||++|||-+.|.+ ++|+.|++|||+..+..... ..+.|
T Consensus 325 qat~~CPn~~~~Sn~iyq~t-PPYrVSSnE~eImkElM~NGPVQA~m~VHEDFF~YkgGiY~H~~~~~~~~e~yr~~gtH 403 (470)
T KOG1544|consen 325 QATAHCPNSYVNSNDIYQVT-PPYRVSSNEKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTH 403 (470)
T ss_pred cccCcCCCcccccCceeeec-CCeeccCCHHHHHHHHHhCCChhhhhhhhhhhhhhccceeeccccccCCchhhhhcccc
Confidence 1456666 444455 999999999999999999999 99999999999884322222 25799
Q ss_pred EEEEEEEeecC-----CccEEEEEccCCCCCCCCcEEEEEecCCeecccceeeEE
Q psy274 133 AVLLVGYGKQD-----DIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYA 182 (187)
Q Consensus 133 av~iVGyg~~~-----g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~ 182 (187)
+|.|.|||++. ..+||+..||||+.||++|||||.||.|+|.||++++.|
T Consensus 404 sVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfvIgA 458 (470)
T KOG1544|consen 404 SVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFVIGA 458 (470)
T ss_pred eEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhHhhhhh
Confidence 99999999763 257999999999999999999999999999999998765
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.1e-17 Score=136.30 Aligned_cols=132 Identities=23% Similarity=0.262 Sum_probs=85.4
Q ss_pred CCccchhhHHH-HHhCcccccccccccCCCCCcccccCCCCcceeeeccceeEeC------ChHHHHHHHHhCCCEEEEE
Q psy274 33 GCDGLEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN------GSETMKKILYKYGPLSVGL 105 (187)
Q Consensus 33 gG~~~~~a~~~-~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~i~------~~~~ik~~l~~~gPV~v~~ 105 (187)
+|. ...+..| .+..|-+.|.+-||. ...-.|.... +..-++. .-..++ +...||+++...|-+...|
T Consensus 168 ~g~-~~m~~a~l~e~sgpv~et~d~y~---~~s~~~~~~~-p~~k~~~-~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~ 241 (372)
T COG4870 168 GGN-ADMSAAYLTEWSGPVYETDDPYS---ENSYFSPTNL-PVTKHVQ-EAQIIPSRKKYLDNGNIKAMFGFYGAVSSSM 241 (372)
T ss_pred CCc-cccccccccccCCcchhhcCccc---cccccCCcCC-chhhccc-cceecccchhhhcccchHHHHhhhcccccee
Confidence 455 5555556 566788888888888 4444443211 1111111 111122 6777999999999888777
Q ss_pred EC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeec----------CCccEEEEEccCCCCCCCCcEEEEEecCCee
Q psy274 106 NG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQ----------DDIPYWLARNSWGPIGPDEGFFKIERGNNAC 173 (187)
Q Consensus 106 ~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~----------~g~~ywivkNSWG~~WG~~Gy~~i~~~~n~c 173 (187)
.+ ..+....-+.+.. .+....+|||+||||++. .|.+.||||||||+.||++|||||++..-.-
T Consensus 242 ~id~~~~~~~~~~~~~~----~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ya~~ 317 (372)
T COG4870 242 YIDATNSLGICIPYPYV----DSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYALN 317 (372)
T ss_pred EEecccccccccCCCCC----CccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeeeccc
Confidence 66 3333333333433 121468999999999964 2467999999999999999999999976333
Q ss_pred c
Q psy274 174 G 174 (187)
Q Consensus 174 g 174 (187)
|
T Consensus 318 g 318 (372)
T COG4870 318 G 318 (372)
T ss_pred c
Confidence 4
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.72 E-value=2.2e-17 Score=141.68 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=66.5
Q ss_pred ChHHHH----HHHHhCCCEEEEEECccccccCCceeeCCCC------------------CCCCCcccEEEEEEEEeec-C
Q psy274 87 GSETMK----KILYKYGPLSVGLNGHLIHFYNGTPIKKNDE------------------ICSPNAIGHAVLLVGYGKQ-D 143 (187)
Q Consensus 87 ~~~~ik----~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~------------------~~~~~~~~Hav~iVGyg~~-~ 143 (187)
..+.++ +.|..++||.++.++..|+.|++||+...-- .|.....+|||+||||+.+ +
T Consensus 293 p~d~l~~~~~~~L~~g~pV~~g~Dv~~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~~ 372 (437)
T cd00585 293 PMDVLKKAAIAQLKDGEPVWFGCDVGKFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDED 372 (437)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEEcChhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecCC
Confidence 455565 6778888999999997678999999965100 1333356899999999964 4
Q ss_pred Cc-cEEEEEccCCCCCCCCcEEEEEec
Q psy274 144 DI-PYWLARNSWGPIGPDEGFFKIERG 169 (187)
Q Consensus 144 g~-~ywivkNSWG~~WG~~Gy~~i~~~ 169 (187)
|+ .||+|+||||+.||++||++|+++
T Consensus 373 g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 373 GKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred CCcceEEEEcccCCCCCCCcceehhHH
Confidence 76 699999999999999999999986
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=98.97 E-value=2.5e-09 Score=92.32 Aligned_cols=79 Identities=20% Similarity=0.354 Sum_probs=56.2
Q ss_pred HHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCC--------------------CCcccEEEEEEEEee-cCCc-c
Q psy274 89 ETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICS--------------------PNAIGHAVLLVGYGK-QDDI-P 146 (187)
Q Consensus 89 ~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~--------------------~~~~~Hav~iVGyg~-~~g~-~ 146 (187)
+.+...|..+-||..+-++..+...+.||.+. +... ....+|||+|+|... ++|+ .
T Consensus 300 ~~~i~~Lk~G~~VwfgcDV~k~~~~k~Gi~D~--~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~g~p~ 377 (438)
T PF03051_consen 300 DAAIKSLKAGYPVWFGCDVGKFFDRKNGIMDT--DLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDEDGKPV 377 (438)
T ss_dssp HHHHHHHHTT--EEEEEETTTTEETTTTEE-T--TSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TTSSEE
T ss_pred HHHHHHHHcCCcEEEeccCCccccccchhhcc--chhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccCCCee
Confidence 34455677878999999995456667888765 2110 113589999999995 6776 5
Q ss_pred EEEEEccCCCCCCCCcEEEEEec
Q psy274 147 YWLARNSWGPIGPDEGFFKIERG 169 (187)
Q Consensus 147 ywivkNSWG~~WG~~Gy~~i~~~ 169 (187)
+|+|+||||+..|.+||+.++..
T Consensus 378 ~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 378 RWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp EEEEE-SBTTTSTBTTEEEEEHH
T ss_pred EEEEEcCCCCCCCCCcEEEECHH
Confidence 99999999999999999999864
No 20
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=97.56 E-value=6.3e-05 Score=62.43 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=56.0
Q ss_pred ChHHHHHH----HHhCCCEEEEEECccccccCCceeeCCC---C----------CC-----CCCcccEEEEEEEEe-ecC
Q psy274 87 GSETMKKI----LYKYGPLSVGLNGHLIHFYNGTPIKKND---E----------IC-----SPNAIGHAVLLVGYG-KQD 143 (187)
Q Consensus 87 ~~~~ik~~----l~~~gPV~v~~~~~~f~~y~~giy~~~~---~----------~~-----~~~~~~Hav~iVGyg-~~~ 143 (187)
+.+-+|++ +..+-||-.+-++..++.-+.||...+- + .. +.....||++|.|.+ +++
T Consensus 296 ~me~lkkl~~~q~qagetVwFG~dvgq~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~~ 375 (444)
T COG3579 296 DMERLKKLAIKQMQAGETVWFGCDVGQLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDET 375 (444)
T ss_pred cHHHHHHHHHHHHhcCCcEEeecCchhhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhccccccC
Confidence 44455443 4455688888777777777777664410 0 00 111247999999999 555
Q ss_pred Cc-cEEEEEccCCCCCCCCcEEEEEe
Q psy274 144 DI-PYWLARNSWGPIGPDEGFFKIER 168 (187)
Q Consensus 144 g~-~ywivkNSWG~~WG~~Gy~~i~~ 168 (187)
|. --|.|.||||.+=|.+|||-.+-
T Consensus 376 g~p~rwkVENSWG~d~G~~GyfvaSd 401 (444)
T COG3579 376 GNPLRWKVENSWGKDVGKKGYFVASD 401 (444)
T ss_pred CCceeeEeecccccccCCCceEeehH
Confidence 44 47999999999999999997763
No 21
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=96.30 E-value=0.0067 Score=43.46 Aligned_cols=55 Identities=24% Similarity=0.449 Sum_probs=34.1
Q ss_pred ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccC
Q psy274 87 GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSW 154 (187)
Q Consensus 87 ~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW 154 (187)
+.+.|+++|.++.||++.+.. ... ....+. .....|.|+|+||.++. +++|..+|
T Consensus 88 ~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~-------~~~~~H~vvi~Gy~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 88 SFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD-------GTYGGHYVVIIGYDEDG---YVYVNDPW 144 (144)
T ss_dssp -HHHHHHHHHTT--EEEEEETTSS-----TTEEEE-------E-TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred cHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC-------CCcCCEEEEEEEEeCCC---EEEEeCCC
Confidence 789999999998899999974 122 111121 22479999999999533 78887776
No 22
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=92.91 E-value=0.59 Score=36.85 Aligned_cols=64 Identities=23% Similarity=0.367 Sum_probs=38.4
Q ss_pred ChHHHHHHHHhCCCEEEEEECcccccc--CCceeeCCCCCC--C-CCcccEEEEEEEEeecCCccEEEEEc
Q psy274 87 GSETMKKILYKYGPLSVGLNGHLIHFY--NGTPIKKNDEIC--S-PNAIGHAVLLVGYGKQDDIPYWLARN 152 (187)
Q Consensus 87 ~~~~ik~~l~~~gPV~v~~~~~~f~~y--~~giy~~~~~~~--~-~~~~~Hav~iVGyg~~~g~~ywivkN 152 (187)
+.++|..+|..++|+++-++..-+.-. +.-......+.| . ....+|.|+|+||+...++ +.+||
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~~~--~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDASLLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAATKE--FEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccccccChhhcccccccccccccCCCCCccEEEEEEEeecCCCCe--EEEeC
Confidence 799999999999988887776333200 111111100122 1 2356899999999954432 55554
No 23
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=91.05 E-value=1.6 Score=33.33 Aligned_cols=67 Identities=18% Similarity=0.322 Sum_probs=43.7
Q ss_pred ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEee-cCCccEEEEEccCCCCCCCCcEEE
Q psy274 87 GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGK-QDDIPYWLARNSWGPIGPDEGFFK 165 (187)
Q Consensus 87 ~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~-~~g~~ywivkNSWG~~WG~~Gy~~ 165 (187)
+.+++++.+.++.|+.+.... ... ......+||++||||-. .+|.++.++-|=| +++++-
T Consensus 90 s~~eV~~~~~~nk~i~i~~~~----------v~~----~~~~~~gHAlavvGya~~~~g~~~y~~WNPW-----~~~~~~ 150 (175)
T PF05543_consen 90 SFDEVKKLIDNNKGIAILADR----------VEQ----TNGPHAGHALAVVGYAKPNNGQKTYYFWNPW-----WNDVMI 150 (175)
T ss_dssp -HHHHHHHHHTT-EEEEEEEE----------TTS----CTTB--EEEEEEEEEEEETTSEEEEEEE-TT------SS-EE
T ss_pred CHHHHHHHHHcCCCeEEEecc----------ccc----CCCCccceeEEEEeeeecCCCCeEEEEeCCc-----cCCcEE
Confidence 788999999999999887652 111 12335799999999997 4568999999988 566777
Q ss_pred EEecCCe
Q psy274 166 IERGNNA 172 (187)
Q Consensus 166 i~~~~n~ 172 (187)
++...+.
T Consensus 151 ~sa~s~~ 157 (175)
T PF05543_consen 151 QSAKSNI 157 (175)
T ss_dssp EETT--E
T ss_pred EecCCCc
Confidence 7665443
No 24
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=90.89 E-value=0.57 Score=38.60 Aligned_cols=55 Identities=16% Similarity=0.310 Sum_probs=35.6
Q ss_pred ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEE
Q psy274 87 GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLA 150 (187)
Q Consensus 87 ~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywiv 150 (187)
..+.|++.|.++.||.+.++.-.+. |... | .......|.|+|+||++++ ..+.++
T Consensus 77 ~~~~l~~~l~~g~pv~~~~D~~~lp-y~~~-~------~~~~~~~H~i~v~G~d~~~-~~~~v~ 131 (317)
T PF14399_consen 77 AWEELKEALDAGRPVIVWVDMYYLP-YRPN-Y------YKKHHADHYIVVYGYDEEE-DVFYVS 131 (317)
T ss_pred HHHHHHHHHhCCCceEEEeccccCC-CCcc-c------cccccCCcEEEEEEEeCCC-CEEEEE
Confidence 5678999999977999997752221 1111 1 1233468999999999654 334444
No 25
>KOG4128|consensus
Probab=88.15 E-value=0.044 Score=45.84 Aligned_cols=95 Identities=19% Similarity=0.190 Sum_probs=57.4
Q ss_pred ChHHHHHHH----HhCCCEEEEEECccccccCCceeeCCC---C--------C---CC-----CCcccEEEEEEEEe-ec
Q psy274 87 GSETMKKIL----YKYGPLSVGLNGHLIHFYNGTPIKKND---E--------I---CS-----PNAIGHAVLLVGYG-KQ 142 (187)
Q Consensus 87 ~~~~ik~~l----~~~gPV~v~~~~~~f~~y~~giy~~~~---~--------~---~~-----~~~~~Hav~iVGyg-~~ 142 (187)
+.+-|++.+ ..+.||-.+-++..+..-++|+.+-.- + . .. ...-.||+++.|.+ .+
T Consensus 305 ~~d~l~k~vv~sl~~~kaVwfgcd~~k~~~~K~G~~dl~l~~~~l~fG~~l~~~~KAeRl~y~eSlmthAml~T~v~~kd 384 (457)
T KOG4128|consen 305 SMDILMKIVVTSLEGDKAVWFGCDIRKAISLKSGPLDLRLHQFDLLFGFKLGESTKAERLDYRESLMTHAMLLTSVGLKD 384 (457)
T ss_pred CHHHHHHHHHHHhcCCcceEEecccHhhhhcccCccchhhccCceeeeeeccccchhhhhhHHHHHHHHHHHhhhccccC
Confidence 455555543 345577777666556666666432200 0 0 00 01247999999999 32
Q ss_pred ---CCccEEEEEccCCCCCCCCcEEEEEecCCeecccceeeEEEEE
Q psy274 143 ---DDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYATID 185 (187)
Q Consensus 143 ---~g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~~ 185 (187)
.+-.-|.|.||||++-|.+|+.++... -.+.+++-.+||
T Consensus 385 ~~~g~~~~~rVenswgkd~gkkg~~~mt~e----wf~EY~feiVVd 426 (457)
T KOG4128|consen 385 PATGGLNEHRVENSWGKDLGKKGVNKMTAE----WFREYAFEIVVD 426 (457)
T ss_pred cccCCchhhhhhchhhhhccccchhhhhHH----HHHhhheeEEee
Confidence 344579999999999999999665432 234555555555
No 26
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.54 E-value=1.5 Score=33.70 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=35.8
Q ss_pred ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274 87 GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG 155 (187)
Q Consensus 87 ~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG 155 (187)
++.+||..|.++.||.+..-. |.. ..-|+|+|+||+ +.++..-+.||
T Consensus 122 sl~~ik~ql~kg~PV~iw~T~--~~~----------------~s~H~v~itgyD----k~n~yynDpyG 168 (195)
T COG4990 122 SLSDIKGQLLKGRPVVIWVTN--FHS----------------YSIHSVLITGYD----KYNIYYNDPYG 168 (195)
T ss_pred cHHHHHHHHhcCCcEEEEEec--ccc----------------cceeeeEeeccc----ccceEeccccc
Confidence 889999999999999876653 211 347999999999 44566667774
No 27
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=77.05 E-value=9.3 Score=27.08 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=31.1
Q ss_pred HHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccC
Q psy274 91 MKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSW 154 (187)
Q Consensus 91 ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW 154 (187)
++++|....||++.+.. .. .....+|+|+|+||. + ....++.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~-----------~~-----~~~~~gH~vVv~g~~-~--~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNL-----------GV-----SITPSGHAMVVIGYD-R--KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEec-----------Cc-----ccCCCCeEEEEEEEc-C--CCCEEEECCC
Confidence 78899998899998774 01 111368999999998 1 1225566665
No 28
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=74.23 E-value=5.7 Score=33.00 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=24.6
Q ss_pred cccEEEEEEEEeecC--CccEEEEEccCCC
Q psy274 129 AIGHAVLLVGYGKQD--DIPYWLARNSWGP 156 (187)
Q Consensus 129 ~~~Hav~iVGyg~~~--g~~ywivkNSWG~ 156 (187)
..+||-.|++.-+.+ +.+...+||-||.
T Consensus 234 ~~~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 234 VKGHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred ccCcceEEeEEEEEccCceEEEEecCCccC
Confidence 358999999999766 8899999999994
No 29
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=69.64 E-value=16 Score=27.60 Aligned_cols=39 Identities=26% Similarity=0.471 Sum_probs=28.6
Q ss_pred ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeec
Q psy274 87 GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQ 142 (187)
Q Consensus 87 ~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~ 142 (187)
+.+.+...|.++||+-++... + .+....|+++|+|-..+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~----------------P-~~~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEA----------------P-GDSWVAHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecC----------------C-CCcceeeEEEEEeecCC
Confidence 688999999999999988552 1 22234688888887743
No 30
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=50.99 E-value=90 Score=23.91 Aligned_cols=53 Identities=25% Similarity=0.467 Sum_probs=31.8
Q ss_pred hHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCCCCCCCCcEEE
Q psy274 88 SETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFK 165 (187)
Q Consensus 88 ~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~ 165 (187)
...|+..|.++.||...-. - . ...||.+|=||. ...||-+-=.||-. .+||++
T Consensus 140 ~~~i~~el~~~rPV~~~g~-----------~-~--------~~GHawViDGy~---~~~~~H~NwGW~G~--~nGyy~ 192 (192)
T PF01640_consen 140 MDMIRNELDNGRPVLYSGN-----------S-K--------SGGHAWVIDGYD---SDGYFHCNWGWGGS--SNGYYR 192 (192)
T ss_dssp HHHHHHHHHTT--EEEEEE-----------E-T--------TEEEEEEEEEEE---SSSEEEEE-SSTTT--T-EEEE
T ss_pred HHHHHHHHHcCCCEEEEEe-----------c-C--------CCCeEEEEcCcc---CCCeEEEeeCccCC--CCCccC
Confidence 3578889989889875432 1 1 129999999995 23466555444422 568875
No 31
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=46.26 E-value=19 Score=31.64 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=26.3
Q ss_pred CCCCCCCccchhhHHHHHhCccccccccccc
Q psy274 28 CSGCGGCDGLEQPIEYTHQAGLESEKDYPYR 58 (187)
Q Consensus 28 ~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~ 58 (187)
..-.+||. -..++..+++.|+++.+.||-+
T Consensus 130 ~~~~DGGq-w~m~~~li~KYGvVPk~~~pet 159 (437)
T cd00585 130 NPQNDGGQ-WDMLVNLIEKYGLVPKSVMPES 159 (437)
T ss_pred CCcCCCCc-hHHHHHHHHHcCCCcccccCCC
Confidence 45678898 8889999999999999999976
No 32
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=42.67 E-value=60 Score=27.08 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=22.6
Q ss_pred ccEEEEEEEEeecCCcc--EEEEEccCCC
Q psy274 130 IGHAVLLVGYGKQDDIP--YWLARNSWGP 156 (187)
Q Consensus 130 ~~Hav~iVGyg~~~g~~--ywivkNSWG~ 156 (187)
.+||-.|++...-++.+ ...+||-||.
T Consensus 227 ~~HaYsVl~v~~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 227 KGHAYSVTDVREVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred cCccEEEEEEEEEecCCeEEEEEECCCCC
Confidence 58999999998666555 8999999993
No 33
>KOG4621|consensus
Probab=38.95 E-value=1.1e+02 Score=22.45 Aligned_cols=77 Identities=16% Similarity=0.274 Sum_probs=45.8
Q ss_pred ChHHHHHHHHhCCCEEEEEEC-cccc------ccCCceeeCCCCCC--CC-CcccEEEEEEEEeecCCccEEEEEccCCC
Q psy274 87 GSETMKKILYKYGPLSVGLNG-HLIH------FYNGTPIKKNDEIC--SP-NAIGHAVLLVGYGKQDDIPYWLARNSWGP 156 (187)
Q Consensus 87 ~~~~ik~~l~~~gPV~v~~~~-~~f~------~y~~giy~~~~~~~--~~-~~~~Hav~iVGyg~~~g~~ywivkNSWG~ 156 (187)
++.+|+.+|+.+--|++.+.- +.+. -.+++.+.++...| .. -..+|.|+|-||+.. .+.+.++|-
T Consensus 58 Si~dIqahLaqGnhiAIaLVdq~~Lhcdlceeplk~ccfspnghhcfcrtp~YqGHfiVi~GYd~a--~~c~~~ndP--- 132 (167)
T KOG4621|consen 58 SIHDIQAHLAQGNHIAIALVDQDKLHCDLCEEPLKSCCFSPNGHHCFCRTPCYQGHFIVICGYDAA--RDCFEINDP--- 132 (167)
T ss_pred eHHHHHHHHhcCCeEEEEEecCCceehHHHHhHHHHhccCCCCccccccCCcccccEEEEeccccc--cCeEEEcCc---
Confidence 688999999985577776644 3221 22445565532222 22 246899999999933 334666653
Q ss_pred CCCCCcEEEEEe
Q psy274 157 IGPDEGFFKIER 168 (187)
Q Consensus 157 ~WG~~Gy~~i~~ 168 (187)
.--+-|..||+.
T Consensus 133 A~adpg~c~~Si 144 (167)
T KOG4621|consen 133 ASADPGHCRISI 144 (167)
T ss_pred ccCCCcceeehh
Confidence 333446666654
No 34
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=33.12 E-value=46 Score=29.30 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=31.3
Q ss_pred hhhHHHHhC-CCccCCHHHHh----------------hhcCC------------CCCCCCCccchhhHHHHHhCcccccc
Q psy274 3 EGQYAIKTG-KLVEFSKSQLV----------------ECAKQ------------CSGCGGCDGLEQPIEYTHQAGLESEK 53 (187)
Q Consensus 3 E~~~~i~~~-~~~~lS~q~l~----------------dc~~~------------~~gC~gG~~~~~a~~~~~~~Gi~~e~ 53 (187)
+..+..+.+ +..+||+.+|. ++... ..-.+||. -..+...+++.|+++.+
T Consensus 77 R~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~DGGq-w~~~~nli~KYGvVPk~ 155 (438)
T PF03051_consen 77 RHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSDGGQ-WDMVVNLIKKYGVVPKS 155 (438)
T ss_dssp HHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S-B--HHHHHHHHHHH---BGG
T ss_pred HHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCCCCc-hHHHHHHHHHcCcCcHh
Confidence 344444444 58999988875 32221 35577888 77777779999999999
Q ss_pred ccccc
Q psy274 54 DYPYR 58 (187)
Q Consensus 54 ~yPY~ 58 (187)
.||-+
T Consensus 156 ~mpet 160 (438)
T PF03051_consen 156 VMPET 160 (438)
T ss_dssp GSTTG
T ss_pred hCCCC
Confidence 99977
No 35
>PF07157 DNA_circ_N: DNA circularisation protein N-terminus; InterPro: IPR009826 This entry represents the N terminus (approximately 100 residues) of a number of phage DNA circulation proteins.
Probab=24.24 E-value=1.2e+02 Score=20.62 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=27.5
Q ss_pred cccccccCCCCCcccccCCCCcceeeeccceeEeC----ChHHHHHHHHhCCCE
Q psy274 52 EKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN----GSETMKKILYKYGPL 101 (187)
Q Consensus 52 e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~i~----~~~~ik~~l~~~gPV 101 (187)
+-.|||.+ ....=+.-...+.++++ .|..=+ ..+.+.++|.+.||=
T Consensus 30 ~heyP~rd---~~~vEDlG~~~r~~~~~-a~~~G~dy~~~~~~L~~al~~~G~G 79 (93)
T PF07157_consen 30 VHEYPYRD---GPWVEDLGRKARRIRVT-AFFVGDDYEAQRDALIAALEAPGPG 79 (93)
T ss_pred EEecCCCC---CcCeeecCCCCcEEEEE-EEEECCcHHHHHHHHHHHHcCCCCe
Confidence 34789983 23333334455667776 554433 556788888887774
No 36
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=23.35 E-value=69 Score=26.16 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=20.2
Q ss_pred cccEEEEEEEEeecCC----ccEEEEEccCCC
Q psy274 129 AIGHAVLLVGYGKQDD----IPYWLARNSWGP 156 (187)
Q Consensus 129 ~~~Hav~iVGyg~~~g----~~ywivkNSWG~ 156 (187)
..+||-.|++....++ .+.-.+||-||.
T Consensus 212 ~~~HaY~Vl~~~~~~~~~~~~~lv~LrNPwg~ 243 (298)
T PF00648_consen 212 VPGHAYAVLDVREVNGNGEGHRLVKLRNPWGS 243 (298)
T ss_dssp BTTS-EEEEEEEEEEETTEEEEEEEEE-TTSS
T ss_pred ccceeEEEEEEEeeccccceeEEEEEcCCCcc
Confidence 4689999999986433 567789999994
No 37
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=21.00 E-value=56 Score=23.15 Aligned_cols=13 Identities=15% Similarity=-0.212 Sum_probs=10.6
Q ss_pred EEEEccC-CCCCCC
Q psy274 148 WLARNSW-GPIGPD 160 (187)
Q Consensus 148 wivkNSW-G~~WG~ 160 (187)
=+|+||+ +-.||.
T Consensus 51 ~iV~Ns~~~g~Wg~ 64 (128)
T smart00276 51 KIVCNSKLNGSWGS 64 (128)
T ss_pred EEEEeCccCCccch
Confidence 6899998 668984
Done!