RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy274
(187 letters)
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database
nomenclature); composed of cysteine peptidases (CPs)
similar to papain, including the mammalian CPs
(cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain
is an endopeptidase with specific substrate preferences,
primarily for bulky hydrophobic or aromatic residues at
the S2 subsite, a hydrophobic pocket in papain that
accommodates the P2 sidechain of the substrate (the
second residue away from the scissile bond). Most
members of the papain subfamily are endopeptidases. Some
exceptions to this rule can be explained by specific
details of the catalytic domains like the occluding loop
in cathepsin B which confers an additional
carboxydipeptidyl activity and the mini-chain of
cathepsin H resulting in an N-terminal exopeptidase
activity. Papain-like CPs have different functions in
various organisms. Plant CPs are used to mobilize
storage proteins in seeds. Parasitic CPs act
extracellularly to help invade tissues and cells, to
hatch or to evade the host immune system. Mammalian CPs
are primarily lysosomal enzymes with the exception of
cathepsin W, which is retained in the endoplasmic
reticulum. They are responsible for protein degradation
in the lysosome. Papain-like CPs are synthesized as
inactive proenzymes with N-terminal propeptide regions,
which are removed upon activation. In addition to its
inhibitory role, the propeptide is required for proper
folding of the newly synthesized enzyme and its
stabilization in denaturing pH conditions. Residues
within the propeptide region also play a role in the
transport of the proenzyme to lysosomes or acidified
vesicles. Also included in this subfamily are proteins
classified as non-peptidase homologs, which lack
peptidase activity or have missing active site residues.
Length = 210
Score = 160 bits (406), Expect = 6e-50
Identities = 78/186 (41%), Positives = 103/186 (55%), Gaps = 11/186 (5%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYR 58
LEG YAIKTGKLV S+ QLV+C+ SG GC+G + EY GL SE DYPY
Sbjct: 32 ALEGAYAIKTGKLVSLSEQQLVDCST--SGNNGCNGGNPDNAFEYVKNGGLASESDYPYT 89
Query: 59 NGNGEKFKCAYDKSKVKLF-TGKDFLYFNGSETMKKILYKYGPLSVGLN-GHLIHFYNGT 116
+G C Y+ SKV TG + E +K L YGP+SV ++ FY G
Sbjct: 90 GKDG---TCKYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGG 146
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIE 176
+ CS + HAVLLVGYG ++ + YW+ +NSWG ++G+ +I RG+N CGI
Sbjct: 147 IY--SGPCCSNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIA 204
Query: 177 TIAGYA 182
+ A Y
Sbjct: 205 SYASYP 210
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease.
Length = 213
Score = 157 bits (400), Expect = 5e-49
Identities = 73/194 (37%), Positives = 103/194 (53%), Gaps = 26/194 (13%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQA-GLESEKDYPYR 58
LEG+Y IKTGKLV S+ QLV+C +G GC+G + EY + G+ +E DYPY
Sbjct: 34 LEGRYCIKTGKLVSLSEQQLVDC---DTGNNGCNGGLPDNAFEYIKKNGGIVTESDYPYT 90
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLY--FNGSETMKKILYKYGPLSVGLNGHLIHF---- 112
+G C + KS K K + +N E ++ L K GP+SV ++ + F
Sbjct: 91 AHDG---TCKFKKSNSKYAKIKGYGDVPYNDEEALQAALAKNGPVSVAIDAYEDDFQLYK 147
Query: 113 ---YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG 169
Y T CS + HAVL+VGYG ++ +PYW+ +NSWG + G+F+I RG
Sbjct: 148 SGVYKHTE-------CSGE-LDHAVLIVGYGTENGVPYWIVKNSWGTDWGENGYFRIARG 199
Query: 170 NNACGIETIAGYAT 183
N CGI + A Y
Sbjct: 200 VNECGIASEASYPI 213
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease.
Length = 175
Score = 104 bits (263), Expect = 6e-29
Identities = 58/188 (30%), Positives = 78/188 (41%), Gaps = 52/188 (27%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQ-AGLESEKDYPY 57
LEG+Y IKTGKLV S+ QLV+C+ + GC+G + EY + GLE+E YPY
Sbjct: 33 ALEGRYCIKTGKLVSLSEQQLVDCSGGGNC--GCNGGLPDNAFEYIKKNGGLETESCYPY 90
Query: 58 RNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTP 117
SV ++ FY
Sbjct: 91 ------------------------------------------TGSVAIDASDFQFYKSGI 108
Query: 118 IKKNDEICSPNAIGHAVLLVGYGKQ--DDIPYWLARNSWGPIGPDEGFFKIERG-NNACG 174
C + HAVL+VGYG + + YW+ +NSWG + G+F+I RG NN CG
Sbjct: 109 YD--HPGCGSGTLDHAVLIVGYGTEVENGKDYWIVKNSWGTDWGENGYFRIARGKNNECG 166
Query: 175 IETIAGYA 182
IE
Sbjct: 167 IEASVASY 174
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as
Dipeptidyl Peptidase I (DPPI), an atypical papain-like
cysteine peptidase with chloride dependency and
dipeptidyl aminopeptidase activity, resulting from its
tetrameric structure which limits substrate access. Each
subunit of the tetramer is composed of three peptides:
the heavy and light chains, which together adopts the
papain fold and forms the catalytic domain; and the
residual propeptide region, which forms a beta barrel
and points towards the substrate's N-terminus. The
subunit composition is the result of the unique
characteristic of procathepsin C maturation involving
the cleavage of the catalytic domain and the
non-autocatalytic excision of an activation peptide
within its propeptide region. By removing N-terminal
dipeptide extensions, cathepsin C activates granule
serine peptidases (granzymes) involved in cell-mediated
apoptosis, inflammation and tissue remodelling.
Loss-of-function mutations in cathepsin C are associated
with Papillon-Lefevre and Haim-Munk syndromes, rare
diseases characterized by hyperkeratosis and early-onset
periodontitis. Cathepsin C is widely expressed in many
tissues with high levels in lung, kidney and placenta.
It is also highly expressed in cytotoxic lymphocytes and
mature myeloid cells.
Length = 243
Score = 92.8 bits (231), Expect = 2e-23
Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 24/188 (12%)
Query: 16 FSKSQLVECAKQCSGCGGCDGLEQPI-EYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKV 74
S ++ C++ GC G G + ++ G+ +E +PY + C S+
Sbjct: 58 LSPQHVLSCSQYSQGCDG--GFPFLVGKFAEDFGIVTEDYFPYTADDDRP--CKASPSEC 113
Query: 75 KLFTGKDFLYFNG------SETMKKILYKYGPLSVGLNGH--LIHFYNGT-PIKKNDEIC 125
+ + D+ Y G + MK +Y+ GP+ V + + G NDE+
Sbjct: 114 RRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVS 173
Query: 126 -SPN-------AIGHAVLLVGYGKQDD--IPYWLARNSWGPIGPDEGFFKIERGNNACGI 175
N HAVLLVG+G+ + YW+ +NSWG ++G+FKI RG N CGI
Sbjct: 174 DGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGI 233
Query: 176 ETIAGYAT 183
E+ A +A
Sbjct: 234 ESQAVFAY 241
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional.
Length = 348
Score = 92.8 bits (230), Expect = 8e-23
Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 11/177 (6%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEY--THQAG-LESEKDYPY 57
+E Q+A+ KLV S+ QLV C +GCGG GL Q E+ + G + +EK YPY
Sbjct: 159 IESQWAVAGHKLVRLSEQQLVSCDHVDNGCGG--GLMLQAFEWVLRNMNGTVFTEKSYPY 216
Query: 58 RNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLNGHLIHFYNGT 116
+GNG+ +C+ ++ SE M L K GP+S+ ++ Y+
Sbjct: 217 VSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDASSFMSYHSG 276
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNAC 173
+ C + H VLLVGY ++PYW+ +NSWG ++G+ ++ G NAC
Sbjct: 277 VLTS----CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNAC 329
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of
cathepsin B and similar proteins, including
tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin
B is a lysosomal papain-like cysteine peptidase which is
expressed in all tissues and functions primarily as an
exopeptidase through its carboxydipeptidyl activity.
Together with other cathepsins, it is involved in the
degradation of proteins, proenzyme activation, Ag
processing, metabolism and apoptosis. Cathepsin B has
been implicated in a number of human diseases such as
cancer, rheumatoid arthritis, osteoporosis and
Alzheimer's disease. The unique carboxydipeptidyl
activity of cathepsin B is attributed to the presence of
an occluding loop in its active site which favors the
binding of the C-termini of substrate proteins. Some
members of this group do not possess the occluding loop.
TIN-Ag is an extracellular matrix basement protein which
was originally identified as a target Ag involved in
anti-tubular basement membrane antibody-mediated
interstitial nephritis. It plays a role in renal
tubulogenesis and is defective in hereditary
tubulointerstitial disorders. TIN-Ag is exclusively
expressed in kidney tissues. .
Length = 236
Score = 86.6 bits (215), Expect = 3e-21
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 31/188 (16%)
Query: 14 VEFSKSQLVECAKQCSGCG-GCDG--LEQPIEYTHQAGLESEKDYPYRNGNGEKF----- 65
V S L+ C CSGCG GC+G + +Y G+ + PY
Sbjct: 51 VLLSAQDLLSC---CSGCGDGCNGGYPDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPP 107
Query: 66 --------------KCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGH--L 109
C + K + + + K + GP+ +
Sbjct: 108 PCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDF 167
Query: 110 IHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG 169
+++ +G + + GHAV ++G+G ++ +PYWLA NSWG + G+F+I RG
Sbjct: 168 LYYKSGVYQHTSGKQLG----GHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRG 223
Query: 170 NNACGIET 177
+N CGIE+
Sbjct: 224 SNECGIES 231
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
Length = 448
Score = 86.7 bits (215), Expect = 3e-20
Identities = 57/188 (30%), Positives = 83/188 (44%), Gaps = 29/188 (15%)
Query: 3 EGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNGN 61
E Y I K V+ S+ +LV C + GC G G + +EY GL S D PY
Sbjct: 269 ESLYKIYRDKSVDLSEQELVNCDTKSQGCSG--GYPDTALEYVKNKGLSSSSDVPYL--- 323
Query: 62 GEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGH--LIHF----YNG 115
+ KC +K +L G + + K L P V + L+ + YNG
Sbjct: 324 AKDGKCVVSSTKKVYIDS--YLVAKGKDVLNKSLV-ISPTVVYIAVSRELLKYKSGVYNG 380
Query: 116 TPIKKNDEICSPNAIGHAVLLVG--YGKQDDIPYWLARNSWGPIGPDEGFFKIER---GN 170
C + + HAVLLVG Y ++ YW+ +NSWG + G+ ++ER G
Sbjct: 381 E--------CGKS-LNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEGT 431
Query: 171 NACGIETI 178
+ CGI T+
Sbjct: 432 DKCGILTV 439
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database
nomenclature), also referred to as the papain family;
composed of two subfamilies of cysteine peptidases
(CPs), C1A (papain) and C1B (bleomycin hydrolase).
Papain-like enzymes are mostly endopeptidases with some
exceptions like cathepsins B, C, H and X, which are
exopeptidases. Papain-like CPs have different functions
in various organisms. Plant CPs are used to mobilize
storage proteins in seeds while mammalian CPs are
primarily lysosomal enzymes responsible for protein
degradation in the lysosome. Papain-like CPs are
synthesized as inactive proenzymes with N-terminal
propeptide regions, which are removed upon activation.
Bleomycin hydrolase (BH) is a CP that detoxifies
bleomycin by hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. It forms a hexameric ring barrel structure
with the active sites imbedded in the central channel.
Some members of the C1 family are proteins classified as
non-peptidase homologs which lack peptidase activity or
have missing active site residues.
Length = 223
Score = 79.1 bits (195), Expect = 2e-18
Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 15/181 (8%)
Query: 1 MLEGQYAIKTG--KLVEFSKSQLVECAKQ-CSGCG-GCDG---LEQPIEYTHQAGLESEK 53
LE Y IK G + V+ S L CA C G CDG L ++ G+ E+
Sbjct: 29 ALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLVALKGIPPEE 88
Query: 54 DYPYRNGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIH 111
DYPY + + + KD+ + N E +K+ L K GP+ G + +
Sbjct: 89 DYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGF 148
Query: 112 FYNGTPIKKN----DEICSPNAIGHAVLLVGYGKQ--DDIPYWLARNSWGPIGPDEGFFK 165
I + GHAV++VGY + ++ +NSWG D G+ +
Sbjct: 149 DRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGR 208
Query: 166 I 166
I
Sbjct: 209 I 209
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional.
Length = 489
Score = 72.5 bits (178), Expect = 3e-15
Identities = 64/201 (31%), Positives = 95/201 (47%), Gaps = 29/201 (14%)
Query: 3 EGQYAIKTGKLVEFSKSQLVECAKQCSGCGG---CDGLEQPIEYTHQAGLESEKDYPYRN 59
E QYAI+ +LV S+ +LV+C+ + +GC G + E IE GL SE DYPY +
Sbjct: 300 ESQYAIRKNELVSLSEQELVDCSFKNNGCYGGLIPNAFEDMIEL---GGLCSEDDYPYVS 356
Query: 60 GNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLN-GHLIHFYNGTPI 118
E C D+ K K + K ++ + K+ + GP+SV + FY G I
Sbjct: 357 DTPE--LCNIDRCKEK-YKIKSYVSIP-EDKFKEAIRFLGPISVSIAVSDDFAFYKGG-I 411
Query: 119 KKNDEICSPNAIGHAVLLVGYGKQDDIP----------YWLARNSWGPIGPDEGFFKIER 168
+ PN HAV+LVGYG ++ Y++ +NSWG ++GF +IE
Sbjct: 412 FDGECGEEPN---HAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIET 468
Query: 169 GNNA----CGIETIAGYATID 185
N C + T A I+
Sbjct: 469 DENGLMKTCSLGTEAYVPLIE 489
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only
papain-like lysosomal cysteine peptidase exhibiting
carboxymonopeptidase activity. It can also act as a
carboxydipeptidase, like cathepsin B, but has been shown
to preferentially cleave substrates through a
monopeptidyl carboxypeptidase pathway. The propeptide
region of cathepsin X, the shortest among papain-like
peptidases, is covalently attached to the active site
cysteine in the inactive form of the enzyme. Little is
known about the biological function of cathepsin X. Some
studies point to a role in early tumorigenesis. A more
recent study indicates that cathepsin X expression is
restricted to immune cells suggesting a role in
phagocytosis and the regulation of the immune response.
Length = 239
Score = 65.5 bits (160), Expect = 3e-13
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 18/157 (11%)
Query: 28 CSGCGGCDGLE--QPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKS--------KVKLF 77
C+G G C G + EY H+ G+ E PY+ +GE + +K +
Sbjct: 65 CAGGGSCHGGDPGGVYEYAHKHGIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNY 124
Query: 78 TG---KDFLYFNGSETMKKILYKYGPLSVGLNGH-LIHFYNGTPIKKNDEICSPNAIGHA 133
T D+ +G + M +Y GP+S G+ + Y G K+ + N H
Sbjct: 125 TLYFVSDYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQDPLIN---HI 181
Query: 134 VLLVGYGKQDD-IPYWLARNSWGPIGPDEGFFKIERG 169
+ + G+G ++ + YW+ RNSWG + G+F+I
Sbjct: 182 ISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTS 218
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional.
Length = 693
Score = 55.7 bits (134), Expect = 2e-09
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 130 IGHAVLLVGYGKQDD----IPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
+ HA++LVG+G+++ YW+ RNSWG EG+FKI RG N GIE+
Sbjct: 618 VNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIES 669
>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional.
Length = 548
Score = 49.5 bits (118), Expect = 2e-07
Identities = 42/187 (22%), Positives = 73/187 (39%), Gaps = 31/187 (16%)
Query: 22 VECAKQCSGCG-GCDG--LEQPIEYTHQAGLESEKDY--PYRNGNGEKFKCAYDKSKVK- 75
CS G GC G E+ ++ G+ + Y PY +G+G + C + +
Sbjct: 266 ARHVLDCSQYGQGCAGGFPEEVGKFAETFGILTTDSYYIPYDSGDGVERACKTRRPSRRY 325
Query: 76 LFTGKDFL--YF---NGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNA- 129
FT L Y+ + + +Y++GP+ + + + ++ S +
Sbjct: 326 YFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDY 385
Query: 130 ----------------IGHAVLLVGYGK-QDDIPYWLARNSWGPIGP--DEGFFKIERGN 170
+ H VL++G+G ++ YWL + WG D G KI RG
Sbjct: 386 STASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGV 445
Query: 171 NACGIET 177
NA IE+
Sbjct: 446 NAYNIES 452
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 48.5 bits (115), Expect = 5e-07
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 119 KKNDEICSPNAIGHAVLLVGYG-----KQDDIPYWLARNSWGPIGPDEGFFKIE 167
KK +C + HAV +VGYG + + YW+ RNSWG DEG+FK++
Sbjct: 710 KKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVD 763
>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational
modification, protein turnover, chaperones].
Length = 372
Score = 32.1 bits (73), Expect = 0.13
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Query: 131 GHAVLLVGYGKQDDIPY----------WLARNSWGPIGPDEGFFKIE 167
GHAVL+VGY DI ++ +NSWG + G+F I
Sbjct: 265 GHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWIS 311
>gnl|CDD|109900 pfam00862, Sucrose_synth, Sucrose synthase. Sucrose synthases
catalyze the synthesis of sucrose from UDP-glucose and
fructose. This family includes the bulk of the sucrose
synthase protein. However the carboxyl terminal region
of the sucrose synthases belongs to the glycosyl
transferase family pfam00534.
Length = 550
Score = 29.1 bits (65), Expect = 1.6
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 20/75 (26%)
Query: 60 GNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
GNG +F + SK +F KD L+ PL L +H Y G +
Sbjct: 150 GNGVQFLNRHLSSK--MFHDKDSLH---------------PL---LEFLRLHTYKGKTLM 189
Query: 120 KNDEICSPNAIGHAV 134
ND I + +A+ A+
Sbjct: 190 LNDRIQNISALQSAL 204
>gnl|CDD|177995 PLN02367, PLN02367, lactoylglutathione lyase.
Length = 233
Score = 28.4 bits (63), Expect = 2.1
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 41 IEYTHQAGLESEKDYP-YRNGNGE 63
IE TH G ES+ D+ Y NGN E
Sbjct: 143 IELTHNWGTESDPDFKGYHNGNSE 166
>gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24. All proteins in this
family for which functions are known are involved in DNA
damage tolerance (likely cell cycle checkpoints).This
family is based on the phylogenomic analysis of JA Eisen
(1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 637
Score = 28.8 bits (64), Expect = 2.1
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Query: 8 IKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKC 67
K L E +L + S G E+ +E +H G ++ Y ++N N +
Sbjct: 388 CKRATLNELDSPRLPSHLSELSRDTLMVGPEEVVEMSHMPGDKTFNLYSHQNYNDFFVEF 447
Query: 68 AYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHF 112
D+ K F +F + + L + S G ++H
Sbjct: 448 D-DEVKASEF--LNFADILSGDWNTRSLLREYSTSSARRG-VMHS 488
>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed.
Length = 774
Score = 27.6 bits (62), Expect = 4.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 127 PNAIGHAVLLVGYGKQDDIPYWLAR 151
PN++G LL YG Q+ YWL R
Sbjct: 162 PNSLGPGELLTHYGTQEQKDYWLPR 186
>gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 406
Score = 26.9 bits (60), Expect = 6.6
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 125 CSPNA--IGHAVLLVGYGKQD 143
C+ +A IG+AV + GKQD
Sbjct: 162 CATSAHCIGNAVEQIQLGKQD 182
>gnl|CDD|232828 TIGR00110, ilvD, dihydroxy-acid dehydratase. This protein,
dihydroxy-acid dehydratase, catalyzes the fourth step in
valine and isoleucine biosynthesis. It contains a
catalytically essential [4Fe-4S] cluster This model
generates scores of up to 150 bits vs.
6-phosphogluconate dehydratase, a homologous enzyme
[Amino acid biosynthesis, Pyruvate family].
Length = 535
Score = 27.0 bits (60), Expect = 7.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 4 GQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL 37
G+YA GK+ E ++ A C GCG C G+
Sbjct: 146 GEYA--AGKISEEELEEIERSA--CPGCGSCSGM 175
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase.
Length = 633
Score = 26.6 bits (59), Expect = 8.5
Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 83 LYFNGSETMKKI-LYKYGPLSVGLNGHLIHFYNGTPI 118
+Y + + ++++ +K G L + +G L+H +G PI
Sbjct: 219 IYGSNEKGLRRVRTFKDGKLKISEDGLLLHDEDGIPI 255
>gnl|CDD|233531 TIGR01687, moaD_arch, MoaD family protein, archaeal. Members of
this family appear to be archaeal versions of MoaD,
subunit 1 of molybdopterin converting factor. This model
has been split from the bacterial/eukaryotic equivalog
model TIGR01682 because the presence of two members of
this family in a substantial number of archaeal species
suggests that roles might not be interchangeable
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Molybdopterin].
Length = 88
Score = 25.5 bits (56), Expect = 9.3
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 88 SETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEI 124
SE K+ L + + +NG + + GT +K D +
Sbjct: 43 SELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVV 79
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.140 0.440
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,456,004
Number of extensions: 860320
Number of successful extensions: 653
Number of sequences better than 10.0: 1
Number of HSP's gapped: 625
Number of HSP's successfully gapped: 30
Length of query: 187
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 96
Effective length of database: 6,901,388
Effective search space: 662533248
Effective search space used: 662533248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)