RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy274
(187 letters)
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase;
HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Length = 214
Score = 169 bits (432), Expect = 5e-54
Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 9/187 (4%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRN 59
+EGQ+ + G L+ S+ +L++C K C G GL GLE+E DY Y+
Sbjct: 34 VEGQWFLNQGTLLSLSEQELLDCDKMDKACMG--GLPSNAYSAIKNLGGLETEDDYSYQG 91
Query: 60 GNGEKFKCAYDKSKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLNGHLIHFYNGTPI 118
C + K K+ +D + + +E + L K GP+SV +N + FY
Sbjct: 92 HMQ---SCQFSAEKAKV-YIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGIS 147
Query: 119 KKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETI 178
+ +CSP I HAVLLVGYG++ D+P+W +NSWG ++G++ + RG+ ACG+ T+
Sbjct: 148 RPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTM 207
Query: 179 AGYATID 185
A A +D
Sbjct: 208 ASSAVVD 214
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol
protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi}
PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A*
1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A*
1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A*
...
Length = 215
Score = 161 bits (409), Expect = 1e-50
Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 18/191 (9%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE----QPIEYTHQAGLESEKDYPY 57
+E Q+ + L S+ LV C K SGC G GL + I + + +E YPY
Sbjct: 34 VECQWFLAGHPLTNLSEQMLVSCDKTDSGCSG--GLMNNAFEWIVQENNGAVYTEDSYPY 91
Query: 58 RNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLNGHLIHFYNG- 115
+G G C V T + E + L GP++V ++ Y G
Sbjct: 92 ASGEGISPPCTTSGHTVGA-TITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGG 150
Query: 116 --TPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNAC 173
T C + H VLLVGY +PYW+ +NSW +EG+ +I +G+N C
Sbjct: 151 VMTS-------CVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQC 203
Query: 174 GIETIAGYATI 184
++ A A +
Sbjct: 204 LVKEEASSAVV 214
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein,
hydrola protease, secreted, thiol protease; HET: P6G;
1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A
3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Length = 222
Score = 146 bits (372), Expect = 7e-45
Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 23/193 (11%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRN 59
E Y + ++ ++ +LV+C + GC G + + IEY G+ E Y Y
Sbjct: 43 TESAYLAYRQQSLDLAEQELVDC----ASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVA 98
Query: 60 GNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET--MKKILYKYGPLSVGLNGHLI---H 111
C ++ + Y + + + + ++V + +
Sbjct: 99 REQ---SCRRPNAQRFGISN----YCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFR 151
Query: 112 FYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 171
Y+G I HAV +VGY + YW+ RNSW D G+ +
Sbjct: 152 HYDGRTI--IQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANID 209
Query: 172 ACGIETIAGYATI 184
IE +
Sbjct: 210 LMMIEEYPYVVIL 222
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen,
cysteine protease, house DUST mite, dermatop
pteronyssinus; 1.61A {Dermatophagoides pteronyssinus}
SCOP: d.3.1.1
Length = 312
Score = 148 bits (375), Expect = 2e-44
Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 23/193 (11%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRN 59
E Y + ++ ++ +LV+C + GC G + + IEY G+ E Y Y
Sbjct: 123 TESAYLAYRDQSLDLAEQELVDC----ASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVA 178
Query: 60 GNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET--MKKILYKYGPLSVGLNGHLI---H 111
C ++ + Y + + + + ++V + +
Sbjct: 179 REQ---SCRRPNAQRFGISN----YCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFR 231
Query: 112 FYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 171
Y+G I HAV +VGY + YW+ RNSW D G+ +
Sbjct: 232 HYDGRTI--IQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANID 289
Query: 172 ACGIETIAGYATI 184
IE +
Sbjct: 290 LMMIEEYPYVVIL 302
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen,
intramolecular DISS bonds, insect larVal midgut; HET:
PG4 PG6; 2.11A {Tenebrio molitor}
Length = 329
Score = 148 bits (376), Expect = 2e-44
Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 23/194 (11%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRN 59
+EGQ A++ G+L S+ L++C+ G GCDG ++ Y H G+ SE YPY
Sbjct: 148 VEGQLALQRGRLTSLSEQNLIDCSSSY-GNAGCDGGWMDSAFSYIHDYGIMSESAYPYE- 205
Query: 60 GNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVGLN-GHLIHFYN 114
+ C +D S+ Y++ G E + + + GP++V ++ + FY
Sbjct: 206 --AQGDYCRFDSSQS---VTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFY- 259
Query: 115 GTPIKK---NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-N 170
D+ C+ + + H VL+VGYG + YW+ +NSWG + G+++ R
Sbjct: 260 ----SGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYG 315
Query: 171 NACGIETIAGYATI 184
N CGI T A Y +
Sbjct: 316 NNCGIATAASYPAL 329
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease,
cysteine protease, zymogen, hydro; 1.40A {Fasciola
hepatica}
Length = 310
Score = 147 bits (373), Expect = 5e-44
Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 23/194 (11%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRN 59
+EGQY + FS+ QLV+C++ G GC G +E +Y Q GLE+E YPY
Sbjct: 125 MEGQYMKNERTSISFSEQQLVDCSRPW-GNNGCGGGLMENAYQYLKQFGLETESSYPYT- 182
Query: 60 GNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVGLN-GHLIHFYN 114
+ +C Y+K K ++ GSE +K ++ GP +V ++ Y
Sbjct: 183 --AVEGQCRYNKQLG---VAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMY- 236
Query: 115 GTPIKK---NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-N 170
+ + CSP + HAVL VGYG Q YW+ +NSWG + G+ ++ R
Sbjct: 237 ----RSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRG 292
Query: 171 NACGIETIAGYATI 184
N CGI ++A +
Sbjct: 293 NMCGIASLASLPMV 306
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut;
1.85A {Tenebrio molitor}
Length = 331
Score = 147 bits (373), Expect = 7e-44
Identities = 61/196 (31%), Positives = 84/196 (42%), Gaps = 26/196 (13%)
Query: 2 LEGQYAIKTGKLVEFSKS--QLVECAKQCSGCGGCDGL-EQPIEYTHQA-GLESEKDYPY 57
+E Q I G + S S QLV+C GC G G Y Q G++SE YPY
Sbjct: 149 IESQMKIANGAGYDSSVSEQQLVDCVPNALGCSG--GWMNDAFTYVAQNGGIDSEGAYPY 206
Query: 58 RNGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVGLN-GHLIHF 112
C YD ++V + Y E + ++ GP++V +
Sbjct: 207 E---MADGNCHYDPNQV---AARLSGYVYLSGPDENMLADMVATKGPVAVAFDADDPFGS 260
Query: 113 YNGTPIKK---NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG 169
Y + C N HAVL+VGYG ++ YWL +NSWG +G+FKI R
Sbjct: 261 Y-----SGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARN 315
Query: 170 -NNACGIETIAGYATI 184
NN CGI +A T+
Sbjct: 316 ANNHCGIAGVASVPTL 331
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A
{Pachyrhizus erosus} PDB: 2b1n_A*
Length = 246
Score = 145 bits (367), Expect = 7e-44
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 13/194 (6%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRN 59
+E +AI TG LV S+ +L++C + GC G Q E+ + G+ SE DYPY+
Sbjct: 35 IEAAHAIATGNLVSLSEQELIDCVDESEGCYN--GWHYQSFEWVVKHGGIASEADYPYKA 92
Query: 60 GNGE-KFKCAYDKSKVKLFTGKDFLYFN---GSETMKKILYKYGPLSVGLNGHLIHFYNG 115
+G+ K DK + + + + +E+ + P+SV ++ HFY+G
Sbjct: 93 RDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSG 152
Query: 116 TPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA--- 172
I SP I H VL+VGYG +D + YW+A+NSWG +G+ +I+R
Sbjct: 153 G-IYDGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLG 211
Query: 173 -CGIETIAGYATID 185
CG+ A Y I+
Sbjct: 212 VCGMNYFASYPIIE 225
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease,
hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo
sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A*
1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Length = 441
Score = 149 bits (379), Expect = 9e-44
Identities = 58/195 (29%), Positives = 81/195 (41%), Gaps = 14/195 (7%)
Query: 1 MLEGQYAIKTGKL--VEFSKSQLVECAKQCSGCGGCDGLEQPI--EYTHQAGLESEKDYP 56
MLE + I T S ++V C++ GC G G I +Y GL E +P
Sbjct: 242 MLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEG--GFPYLIAGKYAQDFGLVEEACFP 299
Query: 57 YRNGNGE-KFKCAYDKSKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLNGHL-IHFY 113
Y + K K + + Y +E MK L +GP++V + Y
Sbjct: 300 YTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHY 359
Query: 114 NG---TPIKKNDEICSPNAIGHAVLLVGYG--KQDDIPYWLARNSWGPIGPDEGFFKIER 168
D HAVLLVGYG + YW+ +NSWG + G+F+I R
Sbjct: 360 KKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRR 419
Query: 169 GNNACGIETIAGYAT 183
G + C IE+IA AT
Sbjct: 420 GTDECAIESIAVAAT 434
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase,
aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP:
d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Length = 220
Score = 143 bits (363), Expect = 1e-43
Identities = 61/188 (32%), Positives = 85/188 (45%), Gaps = 15/188 (7%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQA-GLESEKDYPYR 58
LE AI TGK++ ++ QLV+CA+ GC G Q EY G+ E YPY+
Sbjct: 35 LESAVAIATGKMLSLAEQQLVDCAQNF-NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYK 93
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVGLN-GHLIHFY 113
+ C + K N E M + + Y P+S + Y
Sbjct: 94 GQDD---HCKFQPDKA---IAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMY 147
Query: 114 NGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNAC 173
+P+ + HAVL VGYG+++ IPYW+ +NSWGP G+F IERG N C
Sbjct: 148 RKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMC 207
Query: 174 GIETIAGY 181
G+ A Y
Sbjct: 208 GLAACASY 215
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor,
disease mutation, disulfide bond, glycoprotein,
hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo
sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A*
1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A*
1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A*
2bdl_A* ...
Length = 215
Score = 142 bits (360), Expect = 3e-43
Identities = 65/197 (32%), Positives = 94/197 (47%), Gaps = 29/197 (14%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEY-THQAGLESEKDYPYRN 59
LEGQ KTGKL+ S LV+C + GCGG G +Y G++SE YPY
Sbjct: 34 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG--GYMTNAFQYVQKNRGIDSEDAYPYVG 91
Query: 60 GNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVGLNGHLIHF--- 112
C Y+ + K Y G+E +K+ + + GP+SV ++ L F
Sbjct: 92 QEE---SCMYNPTGK---AAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 145
Query: 113 ----YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER 168
Y DE C+ + + HAVL VGYG Q +W+ +NSWG ++G+ + R
Sbjct: 146 SKGVYY-------DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMAR 198
Query: 169 G-NNACGIETIAGYATI 184
NNACGI +A + +
Sbjct: 199 NKNNACGIANLASFPKM 215
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain;
2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Length = 314
Score = 143 bits (363), Expect = 2e-42
Identities = 66/197 (33%), Positives = 97/197 (49%), Gaps = 29/197 (14%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEY-THQAGLESEKDYPYRN 59
LEGQ KTGKL+ S LV+C + GCGG G +Y G++SE YPY
Sbjct: 133 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG--GYMTNAFQYVQKNRGIDSEDAYPYV- 189
Query: 60 GNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVGLNGHLIHF--- 112
G++ C Y+ + K Y G+E +K+ + + GP+SV ++ L F
Sbjct: 190 --GQEESCMYNPTGK---AAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 244
Query: 113 ----YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER 168
Y DE C+ + + HAVL VGYG Q +W+ +NSWG ++G+ + R
Sbjct: 245 SKGVYY-------DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMAR 297
Query: 169 G-NNACGIETIAGYATI 184
NNACGI +A + +
Sbjct: 298 NKNNACGIANLASFPKM 314
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is
covalently bound to Cys25, lysosomeal protein; HET: O64;
1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B*
2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A*
2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A*
3n4c_A* 3mpe_A* 1nqc_A* ...
Length = 218
Score = 138 bits (351), Expect = 8e-42
Identities = 63/198 (31%), Positives = 92/198 (46%), Gaps = 29/198 (14%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEY-THQAGLESEKDYPYR 58
LE Q +KTGKLV S LV+C+ + G GC+G + +Y G++S+ YPY+
Sbjct: 35 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 94
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVGLNGHLIHF-- 112
+ KC YD Y G E +K+ + GP+SVG++ F
Sbjct: 95 AMDQ---KCQYDSKYR---AATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL 148
Query: 113 -----YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIE 167
Y + C+ N + H VL+VGYG + YWL +NSWG +EG+ ++
Sbjct: 149 YRSGVYY-------EPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMA 200
Query: 168 RG-NNACGIETIAGYATI 184
R N CGI + Y I
Sbjct: 201 RNKGNHCGIASFPSYPEI 218
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease,
prosegment binding loop, glycoprotein, lysosome,
protease, zymogen; 2.1A {Homo sapiens}
Length = 315
Score = 141 bits (357), Expect = 1e-41
Identities = 63/198 (31%), Positives = 92/198 (46%), Gaps = 29/198 (14%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEY-THQAGLESEKDYPYR 58
LE Q +KTGKLV S LV+C+ + G GC+G + +Y G++S+ YPY+
Sbjct: 132 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 191
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVGLNGHLIHF-- 112
+ KC YD Y G E +K+ + GP+SVG++ F
Sbjct: 192 AMDQ---KCQYDSKYR---AATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL 245
Query: 113 -----YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIE 167
Y + C+ N + H VL+VGYG + YWL +NSWG +EG+ ++
Sbjct: 246 YRSGVYY-------EPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMA 297
Query: 168 RG-NNACGIETIAGYATI 184
R N CGI + Y I
Sbjct: 298 RNKGNHCGIASFPSYPEI 315
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya}
SCOP: d.3.1.1 PDB: 1meg_A*
Length = 216
Score = 136 bits (344), Expect = 1e-40
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 29/198 (14%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNG 60
+EG I+TGKLVE S+ +LV+C ++ GC G G +EY + G+ YPY+
Sbjct: 34 VEGINKIRTGKLVELSEQELVDCERRSHGCKG--GYPPYALEYVAKNGIHLRSKYPYK-- 89
Query: 61 NGEKFKCAYDKSKVKLFTGKDFLYFN-GSET-MKKILYKYGPLSVGLNGHLIHF------ 112
++ C + + +E + + K P+SV + F
Sbjct: 90 -AKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGG 147
Query: 113 -YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 171
+ G C + HAV VGYGK Y L +NSWG ++G+ +I+R
Sbjct: 148 IFEGP--------CGTK-VDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPG 198
Query: 172 A----CGIETIAGYATID 185
CG+ + Y T +
Sbjct: 199 NSPGVCGLYKSSYYPTKN 216
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease,
cathepsin, hydrolase, glycoprotein, thiol protease; HET:
DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Length = 265
Score = 137 bits (347), Expect = 1e-40
Identities = 49/222 (22%), Positives = 82/222 (36%), Gaps = 41/222 (18%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYT----HQAGLESEKDYPY 57
LE +K + + S + C K CD P+E+ L +E +YPY
Sbjct: 43 LETIRCMKGYEPTKISALYVANCYKG-EHKDRCDEGSSPMEFLQIIEDYGFLPAESNYPY 101
Query: 58 R---------------NGNGEKFKCAYDKSKVKLFTGKDFLYFNGS----------ETMK 92
+ K ++K++ GK + + + +K
Sbjct: 102 NYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIK 161
Query: 93 KILYKYGPLSVGLN--GHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDI----- 145
+ G + + + + ++G KK +C + HAV +VGYG +
Sbjct: 162 TEVMNKGSVIAYIKAENVMGYEFSG---KKVKNLCGDDTADHAVNIVGYGNYVNSEGEKK 218
Query: 146 PYWLARNSWGPIGPDEGFFKIER-GNNACGIETIAGYATIDV 186
YW+ RNSWGP DEG+FK++ G C I +V
Sbjct: 219 SYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNV 260
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB;
0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A*
2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A*
3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A*
2nqd_B* 3kse_A* 2vhs_A ...
Length = 220
Score = 135 bits (342), Expect = 2e-40
Identities = 61/199 (30%), Positives = 90/199 (45%), Gaps = 28/199 (14%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEY-THQAGLESEKDYPYR 58
LEGQ KTG+L+ S+ LV+C+ G GC+G ++ +Y GL+SE+ YPY
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQ-GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLNGHLIHF----- 112
C Y+ F+ E + K + GP+SV ++ F
Sbjct: 93 ATEE---SCKYNPKYSVA-NDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148
Query: 113 --YNGTPIKKNDEICSPNAIGHAVLLVGYGKQ----DDIPYWLARNSWGPIGPDEGFFKI 166
Y + CS + H VL+VGYG + D+ YWL +NSWG G+ K+
Sbjct: 149 GIY-------FEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 201
Query: 167 ERG-NNACGIETIAGYATI 184
+ N CGI + A Y T+
Sbjct: 202 AKDRRNHCGIASAASYPTV 220
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A
{Plasmodium falciparum} PDB: 3bpm_A*
Length = 243
Score = 135 bits (343), Expect = 3e-40
Identities = 54/205 (26%), Positives = 84/205 (40%), Gaps = 35/205 (17%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRN 59
+E QYAI+ L FS+ +LV+C+ + +GC G G + GL S+ DYPY +
Sbjct: 53 VESQYAIRKKALFLFSEQELVDCSVKNNGCYG--GYITNAFDDMIDLGGLCSQDDYPYVS 110
Query: 60 GNGEKFKCAYDKSKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLN-GHLIHFYNG-- 115
E C + + Y + + K+ L GP+S+ + FY G
Sbjct: 111 NLPE--TCNLKRCNER---YTIKSYVSIPDDKFKEALRYLGPISISIAASDDFAFYRGGF 165
Query: 116 -TPIKKNDEICSPNAIGHAVLLVGYG----------KQDDIPYWLARNSWGPIGPDEGFF 164
C HAV+LVGYG + + Y++ +NSWG + G+
Sbjct: 166 YDG------ECGAA-PNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYI 218
Query: 165 KIERGNNA----CGIETIAGYATID 185
+E N C I T A ++
Sbjct: 219 NLETDENGYKKTCSIGTEAYVPLLE 243
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO
protease; HET: 074; 1.60A {Trypanosoma brucei} PDB:
3mor_A*
Length = 325
Score = 137 bits (347), Expect = 4e-40
Identities = 51/216 (23%), Positives = 77/216 (35%), Gaps = 45/216 (20%)
Query: 1 MLEGQYAIKTG-KLVEFSKSQLVECAKQCSGCG-GCDG--LEQPIEYTHQAGLESEKDYP 56
+ ++ G + V S L+ C CS CG GC+G ++ Y GL S+ P
Sbjct: 108 AMSDRFCTMGGVQDVHISAGDLLAC---CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQP 164
Query: 57 YRNGNGE----------------------KFKCAYDKSKVKLFTGKDFLYFNGSETMKKI 94
Y + + C V + G + +
Sbjct: 165 YPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRE 224
Query: 95 LYKYGPLSVGLNGH--LIHF----YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYW 148
L+ GP V + + I + Y+ GHAV LVG+G + +PYW
Sbjct: 225 LFFRGPFEVAFDVYEDFIAYNSGVYHHV--------SGQYLGGHAVRLVGWGTSNGVPYW 276
Query: 149 LARNSWGPI-GPDEGFFKIERGNNACGIETIAGYAT 183
NSW G +G+F I RG++ CGIE
Sbjct: 277 KIANSWNTEWG-MDGYFLIRRGSSECGIEDGGSAGI 311
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition,
hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1
PDB: 1cjl_A 3hwn_A*
Length = 316
Score = 136 bits (346), Expect = 6e-40
Identities = 61/199 (30%), Positives = 91/199 (45%), Gaps = 28/199 (14%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEY-THQAGLESEKDYPYR 58
LEGQ KTG+L+ S+ LV+C+ G GC+G ++ +Y GL+SE+ YPY
Sbjct: 130 LEGQMFRKTGRLISLSEQNLVDCSGPQ-GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 188
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLNGHLIHF----- 112
+ C Y+ F+ E + K + GP+SV ++ F
Sbjct: 189 ---ATEESCKYNPKYSVA-NDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 244
Query: 113 --YNGTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKI 166
Y + CS + H VL+VGYG + D+ YWL +NSWG G+ K+
Sbjct: 245 GIY-------FEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 297
Query: 167 ERG-NNACGIETIAGYATI 184
+ N CGI + A Y T+
Sbjct: 298 AKDRRNHCGIASAASYPTV 316
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica
papaya} SCOP: d.3.1.1
Length = 322
Score = 135 bits (343), Expect = 2e-39
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 29/198 (14%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNG 60
+EG I+TGKLVE S+ +LV+C ++ GC G G +EY + G+ YPY+
Sbjct: 140 VEGINKIRTGKLVELSEQELVDCERRSHGCKG--GYPPYALEYVAKNGIHLRSKYPYK-- 195
Query: 61 NGEKFKCAYDKSKVKLFTGKDFLYF-NGSET-MKKILYKYGPLSVGLNGHLIHF------ 112
++ C + + +E + + K P+SV + F
Sbjct: 196 -AKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGG 253
Query: 113 -YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 171
+ G C + AV VGYGK Y L +NSWG ++G+ +I+R
Sbjct: 254 IFEGP--------CGTK-VDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPG 304
Query: 172 A----CGIETIAGYATID 185
CG+ + Y T +
Sbjct: 305 NSPGVCGLYKSSYYPTKN 322
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular
interaction, HY hydrolase inhibitor complex; 2.20A
{Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A
3bpf_A* 3pnr_A
Length = 241
Score = 133 bits (336), Expect = 3e-39
Identities = 56/205 (27%), Positives = 87/205 (42%), Gaps = 35/205 (17%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRN 59
+E QYAI+ KL+ S+ +LV+C+ + GC G GL E + G+ + DYPY +
Sbjct: 51 VESQYAIRKNKLITLSEQELVDCSFKNYGCNG--GLINNAFEDMIELGGICPDGDYPYVS 108
Query: 60 GNGEKFKCAYDKSKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLN-GHLIHFYNG-- 115
C D+ K Y + + +K+ L GP+S+ + FY
Sbjct: 109 DAPN--LCNIDRCTEK---YGIKNYLSVPDNKLKEALRFLGPISISVAVSDDFAFYKEGI 163
Query: 116 -TPIKKNDEICSPNAIGHAVLLVGYG----------KQDDIPYWLARNSWGPIGPDEGFF 164
C + HAV+LVG+G K + Y++ +NSWG + GF
Sbjct: 164 FDG------ECGDQ-LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFI 216
Query: 165 KIERGNNA----CGIETIAGYATID 185
IE + CG+ T A I+
Sbjct: 217 NIETDESGLMRKCGLGTDAFIPLIE 241
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase;
HET: E64 SO4; 1.87A {Carica candamarcensis}
Length = 213
Score = 131 bits (332), Expect = 7e-39
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 31/197 (15%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNG 60
+EG I TG+L+ S+ +L++C ++ GC G G ++Y +G+ + YPY
Sbjct: 34 VEGINKIVTGQLLSLSEQELLDCERRSYGCRG--GFPLYALQYVANSGIHLRQYYPYE-- 89
Query: 61 NGEKFKCAYDKSKVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNGHLIHF------- 112
G + +C ++K +E P+S+ + F
Sbjct: 90 -GVQRQCRASQAKGPKVKTDGVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGI 148
Query: 113 YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA 172
+ G C + I HAV VGYG Y L +NSWG + G+ +I+RG+
Sbjct: 149 FAGP--------CGTS-IDHAVAAVGYGN----DYILIKNSWGTGWGEGGYIRIKRGSGN 195
Query: 173 ----CGIETIAGYATID 185
CG+ + + + T +
Sbjct: 196 PQGACGVLSDSVFPTKN 212
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD,
L-DOM domain., hydrolase; 1.63A {Tabernaemontana
divaricata} SCOP: d.3.1.1
Length = 215
Score = 131 bits (331), Expect = 8e-39
Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 28/195 (14%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEY-THQAGLESEKDYPYRN 59
+E I+TG+L+ S+ +LV+C GC G G +Y G++++++YPY
Sbjct: 34 VESINKIRTGQLISLSEQELVDCDTASHGCNG--GWMNNAFQYIITNGGIDTQQNYPYS- 90
Query: 60 GNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHF------- 112
+ C + +V G + N ++ + P+SV + F
Sbjct: 91 --AVQGSCKPYRLRVVSINGFQRVTRNNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGI 147
Query: 113 YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA 172
+ G C A H V++VGYG Q YW+ RNSWG ++G+ +ER +
Sbjct: 148 FTGP--------CG-TAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVAS 198
Query: 173 ----CGIETIAGYAT 183
CGI + Y T
Sbjct: 199 SAGLCGIAQLPSYPT 213
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP:
d.3.1.1 PDB: 1gec_E*
Length = 218
Score = 130 bits (329), Expect = 2e-38
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 29/196 (14%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNG 60
+EG I TG L+E S+ +LV+C K GC G G ++Y G+ + K YPY+
Sbjct: 34 VEGINKIVTGNLLELSEQELVDCDKHSYGCKG--GYQTTSLQYVANNGVHTSKVYPYQ-- 89
Query: 61 NGEKFKCAYDKSKVKLFTGKDFLYFN-GSET-MKKILYKYGPLSVGLNGHLIHF------ 112
+++KC + ET L PLSV + F
Sbjct: 90 -AKQYKCRATDKPGPKVKITGYKRVPSNCETSFLGALAN-QPLSVLVEAGGKPFQLYKSG 147
Query: 113 -YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 171
++G C + HAV VGYG D Y + +NSWGP ++G+ +++R +
Sbjct: 148 VFDGP--------CGTK-LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSG 198
Query: 172 A----CGIETIAGYAT 183
CG+ + Y
Sbjct: 199 NSQGTCGVYKSSYYPF 214
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline
specificity, carboh papain family, hydrolase; HET: NAG
FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Length = 221
Score = 129 bits (328), Expect = 3e-38
Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 33/198 (16%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQ-AGLESEKDYPYRN 59
+EG I TG L+ S+ QLV+C GC G G ++ G+ SE+ YPYR
Sbjct: 36 VEGINQIVTGDLISLSEQQLVDCTTANHGCRG--GWMNPAFQFIVNNGGINSEETYPYRG 93
Query: 60 GNGEKFKCAYDKSKVKLFTGKDFLYFN---GSETMKKILYKYGPLSVGLNGHLIHF---- 112
+G C + Y N +E + P+SV ++ F
Sbjct: 94 QDG---ICNSTVNAPV---VSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYR 147
Query: 113 ---YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG 169
+ G+ C+ + HA+ +VGYG ++D +W+ +NSWG + G+ + ER
Sbjct: 148 SGIFTGS--------CNIS-ANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERN 198
Query: 170 NNA----CGIETIAGYAT 183
CGI A Y
Sbjct: 199 IENPDGKCGITRFASYPV 216
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET:
E64; 2.10A {Jacaratia mexicana}
Length = 214
Score = 128 bits (324), Expect = 9e-38
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 33/194 (17%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNG 60
+EG I TG+L+ S+ +L++C ++ GC G G ++Y G+ +E++YPY
Sbjct: 34 IEGINKIITGQLISLSEQELLDCERRSHGCDG--GYQTTSLQYVVDNGVHTEREYPYE-- 89
Query: 61 NGEKFKCAYDKSKVKLFTGKDFLYFN-GSET-MKKILYKYGPLSVGLNGHLIHF------ 112
++ +C K + Y E + + + P+SV + F
Sbjct: 90 -KKQGRCRAKDKKGPKVYITGYKYVPANDEISLIQAIAN-QPVSVVTDSRGRGFQFYKGG 147
Query: 113 -YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-- 169
Y G C N HAV VGYGK Y L +NSWGP ++G+ +I+R
Sbjct: 148 IYEGP--------CGTN-TDHAVTAVGYGK----TYLLLKNSWGPNWGEKGYIRIKRASG 194
Query: 170 --NNACGIETIAGY 181
CG+ T + +
Sbjct: 195 RSKGTCGVYTSSFF 208
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP,
cysteine protease, allergen, protease, thiol protease;
1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B
3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A*
1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A*
5pad_A* 6pad_A* ...
Length = 212
Score = 128 bits (324), Expect = 9e-38
Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 33/198 (16%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNG 60
+EG I+TG L ++S+ +L++C ++ GC G G ++ Q G+ YPY
Sbjct: 34 IEGIIKIRTGNLNQYSEQELLDCDRRSYGCNG--GYPWSALQLVAQYGIHYRNTYPYE-- 89
Query: 61 NGEKFKCAYDKSKVKLFTGKDFLYFN-GSET-MKKILYKYGPLSVGLNGHLIHF------ 112
G + C + +E + + P+SV L F
Sbjct: 90 -GVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGG 147
Query: 113 -YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 171
+ G C N + HAV VGYG Y L +NSWG + G+ +I+RG
Sbjct: 148 IFVGP--------CG-NKVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTG 194
Query: 172 A----CGIETIAGYATID 185
CG+ T + Y +
Sbjct: 195 NSYGVCGLYTSSFYPVKN 212
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A
{Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Length = 277
Score = 129 bits (326), Expect = 2e-37
Identities = 47/211 (22%), Positives = 73/211 (34%), Gaps = 38/211 (18%)
Query: 1 MLEGQYAIKTG---KLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDY 55
+ + IK S +++C G C+G +Y HQ G+ E
Sbjct: 74 AMADRINIKRKGAWPSTLLSVQNVIDC----GNAGSCEGGNDLSVWDYAHQHGIPDETCN 129
Query: 56 PYRNGNGE-----------KFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVG 104
Y+ + E +FK + L+ D+ +G E M +Y GP+S G
Sbjct: 130 NYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCG 189
Query: 105 LN-GHLIHFYNG---TPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPD 160
+ + Y G E I H V + G+G D YW+ RNSWG +
Sbjct: 190 IMATERLANYTGGIYA------EYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGE 243
Query: 161 EGFFKIERGNNACG--------IETIAGYAT 183
G+ +I G IE +
Sbjct: 244 RGWLRIVTSTYKDGKGARYNLAIEEHCTFGD 274
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm,
ricinosomes, SEED germi senescence, hydrolase-hydrolase
inhibitor complex; 2.00A {Ricinus communis} SCOP:
d.3.1.1
Length = 229
Score = 126 bits (320), Expect = 5e-37
Identities = 56/198 (28%), Positives = 82/198 (41%), Gaps = 30/198 (15%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCS-GCGGCDGL-EQPIEY-THQAGLESEKDYPYR 58
+EG IKT KLV S+ +LV+C + GC G GL + E+ + G+ +E +YPY
Sbjct: 35 VEGINQIKTNKLVSLSEQELVDCDTDQNQGCNG--GLMDYAFEFIKQRGGITTEANYPYE 92
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYF-NGSETMKKILYKYGPLSVGLNGHLIHF----- 112
+G C K + E P+SV ++ F
Sbjct: 93 AYDG---TCDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSE 149
Query: 113 --YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDD-IPYWLARNSWGPIGPDEGFFKIERG 169
+ G+ C + H V +VGYG D YW +NSWGP ++G+ ++ERG
Sbjct: 150 GVFTGS--------CGTE-LDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERG 200
Query: 170 ----NNACGIETIAGYAT 183
CGI A Y
Sbjct: 201 ISDKEGLCGIAMEASYPI 218
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia
arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Length = 220
Score = 126 bits (318), Expect = 1e-36
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 27/196 (13%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEY-THQAGLESEKDYPYR 58
+EG I TG L+ S+ +LV+C + GCDG + ++ + G+ +E +YPY
Sbjct: 34 VEGINKIATGDLISLSEQELVDCGRTQ-NTRGCDGGFMTDGFQFIINNGGINTEANYPYT 92
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNGHLIHF----- 112
E+ +C D + K + + +E + Y P+SV L +F
Sbjct: 93 ---AEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSS 149
Query: 113 --YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
+ G C + HAV +VGYG + I YW+ +NSWG +EG+ +I+R
Sbjct: 150 GIFTGP--------CGTA-VDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNV 200
Query: 170 --NNACGIETIAGYAT 183
CGI A Y
Sbjct: 201 GGVGQCGIAKKASYPV 216
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH
2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP:
d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Length = 208
Score = 121 bits (307), Expect = 3e-35
Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 27/191 (14%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRN 59
+E I+TG L+ S+ +LV+C K+ GC G G +Y G++++ +YPY+
Sbjct: 34 VESINQIRTGNLISLSEQELVDCDKKNHGCLG--GAFVFAYQYIINNGGIDTQANYPYKA 91
Query: 60 GNGEKFKCAYDKSKVKLFTGKDFLYFN---GSETMKKILYKYGPLSVGLN--GHLIHFYN 114
G C V + G Y +E K P +V ++ Y+
Sbjct: 92 VQG---PCQAASKVVSI-DG----YNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYS 143
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNNA 172
+ H V +VGY YW+ RNSWG ++G+ ++ R G
Sbjct: 144 SGIFSG----PCGTKLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGL 195
Query: 173 CGIETIAGYAT 183
CGI + Y T
Sbjct: 196 CGIARLPYYPT 206
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase,
digestive tract, hydrolase-hydrolase INH complex; HET:
074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A*
Length = 254
Score = 121 bits (307), Expect = 9e-35
Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 53/227 (23%)
Query: 1 MLEGQYAIKTG--KLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYP 56
+ + I++G + VE S L+ C + C GC+G L +Y + G+ +
Sbjct: 39 AMSDRSCIQSGGKQNVELSAVDLLSCCESCGL--GCEGGILGPAWDYWVKEGIVTGSSKE 96
Query: 57 YRNG-------------NGEKFKCAYDK------------------SKVKLFTGKDFLYF 85
G G+ C ++ K +
Sbjct: 97 NHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVK 156
Query: 86 NGSETMKKILYKYGPLSVGLNGH--LIHF----YNGTPIKKNDEICSPNAIGHAVLLVGY 139
N + ++K + KYGP+ G + +++ Y GHA+ ++G+
Sbjct: 157 NDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHI--------TGETLGGHAIRIIGW 208
Query: 140 GKQDDIPYWLARNSWGPI-GPDEGFFKIERGNNACGIETIAGYATID 185
G ++ PYWL NSW G + G+F+I RG + C IE+ I+
Sbjct: 209 GVENKAPYWLIANSWNEDWG-ENGYFRIVRGRDECSIESEVTAGRIN 254
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 224
Score = 120 bits (304), Expect = 1e-34
Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 34/201 (16%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEY-THQAGLESEKDYPYR 58
LEG + KTGKLV S+ +L++C++ G C G + +Y G+ SE YPY
Sbjct: 40 LEGAHCAKTGKLVSLSEQELMDCSRA-EGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYL 98
Query: 59 NGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSETMKKILYKYGPLSVGLNGHLIHF--- 112
+ +C + K + + SE K P+S+ + + F
Sbjct: 99 ARDE---ECRAQSCEK---VVKILGFKDVPRRSEAAMKAALAKSPVSIAIEADQMPFQFY 152
Query: 113 ----YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDD--IPYWLARNSWGPIGPDEGFFKI 166
++ + C + + H VLLVGYG + +W+ +NSWG +G+ +
Sbjct: 153 HEGVFDAS--------CGTD-LDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYM 203
Query: 167 ERG---NNACGIETIAGYATI 184
CG+ A + +
Sbjct: 204 AMHKGEEGQCGLLLDASFPVM 224
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine
endoprotease, endopeptidase, LEUP hydrolase; HET: AR7;
2.20A {Hordeum vulgare}
Length = 262
Score = 121 bits (306), Expect = 1e-34
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 33/201 (16%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEY-THQAGLESEKDYPYR 58
+EG AI+TG LV S+ +L++C + GC G ++ EY + GL +E YPYR
Sbjct: 37 VEGINAIRTGSLVSLSEQELIDCDT--ADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYR 94
Query: 59 NGNGEKFKCAYDKSKVKLFTG-KDFLYFN---GSETMKKILYKYGPLSVGLNGHLIHF-- 112
G C ++ + + SE P+SV + F
Sbjct: 95 AARG---TCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMF 151
Query: 113 -----YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDD-IPYWLARNSWGPIGPDEGFFKI 166
+ G C + H V +VGYG +D YW +NSWGP ++G+ ++
Sbjct: 152 YSEGVFTGE--------CGTE-LDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRV 202
Query: 167 ERGNNA----CGIETIAGYAT 183
E+ + A CGI A Y
Sbjct: 203 EKDSGASGGLCGIAMEASYPV 223
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco
hydrolase, lysosome, protease, thiol protease, zymogen,
CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A*
3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A*
1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A*
1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Length = 266
Score = 118 bits (299), Expect = 2e-33
Identities = 52/224 (23%), Positives = 79/224 (35%), Gaps = 45/224 (20%)
Query: 1 MLEGQYAIKTGKL--VEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYP 56
+ + I T VE S L+ C G GC+G + + + GL S Y
Sbjct: 43 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCG-DGCNGGYPAEAWNFWTRKGLVSGGLYE 101
Query: 57 YRNG-------------NGEKFKCAYDK-----------------SKVKLFTGKDFLYFN 86
G NG + C + + K + + N
Sbjct: 102 SHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSN 161
Query: 87 GSETMKKILYKYGPLSVGLNGHL-IHFYNGTPIKK--NDEICSPNAIGHAVLLVGYGKQD 143
+ + +YK GP+ + + Y K + GHA+ ++G+G ++
Sbjct: 162 SEKDIMAEIYKNGPVEGAFSVYSDFLLY-----KSGVYQHVTGEMMGGHAIRILGWGVEN 216
Query: 144 DIPYWLARNSWGPI-GPDEGFFKIERGNNACGIETIAGYATIDV 186
PYWL NSW G D GFFKI RG + CGIE+
Sbjct: 217 GTPYWLVANSWNTDWG-DNGFFKILRGQDHCGIESEVVAGIPRT 259
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 119 bits (299), Expect = 4e-33
Identities = 55/226 (24%), Positives = 84/226 (37%), Gaps = 49/226 (21%)
Query: 1 MLEGQYAIKTGKL--VEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYP 56
+ + I T VE S L+ C G GC+G + + + GL S Y
Sbjct: 100 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCG-DGCNGGYPAEAWNFWTRKGLVSGGLYE 158
Query: 57 YRNG-------------NGEKFKCAYDK-----------------SKVKLFTGKDFLYFN 86
G NG + C + + K + + N
Sbjct: 159 SHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSN 218
Query: 87 GSETMKKILYKYGPLSVGLNGHL-IHFYNGTPIKKN---DEICSPNAIGHAVLLVGYGKQ 142
+ + +YK GP+ + + Y K+ + GHA+ ++G+G +
Sbjct: 219 SEKDIMAEIYKNGPVEGAFSVYSDFLLY------KSGVYQHVTGEMMGGHAIRILGWGVE 272
Query: 143 DDIPYWLARNSWGPI-GPDEGFFKIERGNNACGIET--IAGYATID 185
+ PYWL NSW G D GFFKI RG + CGIE+ +AG D
Sbjct: 273 NGTPYWLVANSWNTDWG-DNGFFKILRGQDHCGIESEVVAGIPRTD 317
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase,
peptidase_C1A, hydrolase, in form; 1.31A {Crocus
sativus}
Length = 222
Score = 115 bits (290), Expect = 1e-32
Identities = 51/191 (26%), Positives = 75/191 (39%), Gaps = 15/191 (7%)
Query: 2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEY-THQAGLESEKDYPYRNG 60
+EG AI TG+L+ S+ Q+V+C G D + + G+ S+ +YPY
Sbjct: 34 IEGIDAITTGRLISVSEQQIVDCDTXXXXXXGGD-ADDAFRWVITNGGIASDANYPYTGV 92
Query: 61 NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLN--GHLIHFYNGTPI 118
+G C +K G + S + P+SV + Y G I
Sbjct: 93 DG---TCDLNKPIAARIDG--YTNVPNSSSALLDAVAKQPVSVNIYTSSTSFQLYTGPGI 147
Query: 119 KKNDE-ICSPNAIGHAVLLVGYGKQDD-IPYWLARNSWGPIGPDEGFFKIERGNNA---- 172
P + H VL+VGYG YW+ +NSWG +G+ I R N
Sbjct: 148 FAGSSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGV 207
Query: 173 CGIETIAGYAT 183
C I+ Y T
Sbjct: 208 CAIDAWGSYPT 218
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A
{Xylella fastidiosa}
Length = 291
Score = 116 bits (292), Expect = 2e-32
Identities = 37/199 (18%), Positives = 69/199 (34%), Gaps = 25/199 (12%)
Query: 1 MLEGQYAIKTGKLVEFSKSQLVEC--AKQCSGCGGCDG---LEQPIEYTHQAGLESEKDY 55
++ + I + EF S+L ++ G D + I+ H+ G+ EK++
Sbjct: 86 AIQFER-IHDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEW 144
Query: 56 PYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS--------------ETMKKILYKYGPL 101
PY + + + D Y + + +K L P
Sbjct: 145 PYGDTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPF 204
Query: 102 SVGLNGH--LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGP 159
G + + + + GHAVL VGY D+I ++ RNSWG
Sbjct: 205 VFGFSVYNSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGYD--DEIRHFRIRNSWGNNVG 262
Query: 160 DEGFFKIERG-NNACGIET 177
++G+F + + +
Sbjct: 263 EDGYFWMPYEYISNTQLAD 281
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural
genomics, JO center for structural genomics, JCSG; HET:
MSE; 2.23A {Parabacteroides distasonis}
Length = 383
Score = 38.3 bits (88), Expect = 9e-04
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 132 HAVLLVGYGK-QDDIPYWLARNSWGPIGPDEGFFKI 166
H + + G K Q+ Y++ +NSWG G +
Sbjct: 318 HGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYA 353
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1
protease, hydrolase; 1.73A {Saccharomyces cerevisiae}
PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A
1gcb_A
Length = 457
Score = 33.2 bits (75), Expect = 0.043
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 87 GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDD-- 144
GS T K + K G + + L + YN K + + + A+L+ G +
Sbjct: 328 GSHTPKFMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTAAMLITGCHVDETSK 387
Query: 145 -IPYWLARNSWGPIGPDEGFF 164
+ NSWG +G +
Sbjct: 388 LPLRYRVENSWGKDSGKDGLY 408
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease,
SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens}
SCOP: d.3.1.1 PDB: 1cb5_A
Length = 453
Score = 30.9 bits (69), Expect = 0.24
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 87 GSETMKKILYKYGPLSVGLNGHLIHFY-NGTPIKKNDEICSP-NAIGHAVLLVGYGKQDD 144
G + K K G + L H + F + + K + + + + HA+ ++DD
Sbjct: 324 GCDVGKHFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAVSEKDD 383
Query: 145 IP----YWLARNSWGPIGPDEGFF 164
W NSWG +G+
Sbjct: 384 QDGAFTKWRVENSWGEDHGHKGYL 407
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 27.7 bits (61), Expect = 2.5
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 68 AYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYN 114
+ KS + + K F +N S T+ + + + ++N
Sbjct: 371 DHLKSFMDGLSAKVFRTYNASITLDRWFKEKPVDPKWSTADKLAYFN 417
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 27.2 bits (61), Expect = 3.6
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 10/72 (13%)
Query: 11 GKLVEFS---------KSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
GKL+ K ++ + + E P + LE P + G
Sbjct: 112 GKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICP-KCGK 170
Query: 62 GEKFKCAYDKSK 73
+F+ +K+K
Sbjct: 171 PGQFRLIPEKTK 182
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic,
transferase, amino-thiazole, acyltransferase, lipid
synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP:
c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A*
2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A
1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A*
2cf2_A 2byw_A ...
Length = 406
Score = 27.1 bits (61), Expect = 3.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 126 SPNAIGHAVLLVGYGKQD 143
S + IG+AV + GKQD
Sbjct: 166 SAHCIGNAVEQIQLGKQD 183
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 26.7 bits (60), Expect = 4.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 126 SPNAIGHAVLLVGYGKQD 143
S + IG+A ++ YGKQD
Sbjct: 185 SNHCIGNAYEMIQYGKQD 202
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid,
hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1
d.17.1.4
Length = 367
Score = 26.5 bits (57), Expect = 5.6
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 20/108 (18%)
Query: 54 DYPYRNGNGEKFK-CAYDKSKVKLFT---GKDFLYFNGSET---MKKILYKYGPLSVGLN 106
Y + + CA +++ + G+D Y G + + ++ + +
Sbjct: 234 RTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILA- 292
Query: 107 GHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSW 154
+ + + +GHA+ +VG K +D + N W
Sbjct: 293 ------------QSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPW 328
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.140 0.440
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,960,097
Number of extensions: 171531
Number of successful extensions: 522
Number of sequences better than 10.0: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 47
Length of query: 187
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 99
Effective length of database: 4,244,745
Effective search space: 420229755
Effective search space used: 420229755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.3 bits)