BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2747
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 67/99 (67%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
++ T +R+ TF WP P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D+PW
Sbjct: 2 SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWV 61
Query: 452 EHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTP 490
EHA+WFP C F++ +KG++F+++ P + +++ TP
Sbjct: 62 EHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLSTP 100
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 38/48 (79%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
CK+CMDKEV VV +PCGHLV C CA SL +CP+CR IK TVRTFLS
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 38/69 (55%)
Query: 228 SGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQ 287
+ R+ TF WP S V PE LA GFYY+ + D VKC C + WE GD+ EH +
Sbjct: 7 AARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEHAKW 66
Query: 288 SPNCPFLAR 296
P C FL R
Sbjct: 67 FPRCEFLIR 75
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 136 TMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMA 195
+M +R+RTF WPS+ PV +++A AGF+Y G +V+CF+C + W D
Sbjct: 2 SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWV 61
Query: 196 KHRAKDPGCPFV 207
+H P C F+
Sbjct: 62 EHAKWFPRCEFL 73
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M +R+RTF WPS+ PV +++A AGF+Y G +V+CF+C + W D +
Sbjct: 3 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVE 62
Query: 61 HRAKDPGCPFV 71
H P C F+
Sbjct: 63 HAKWFPRCEFL 73
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 92 SGRLATFNNWPVSFIVTPEALAKTGFYYLKQGD 124
+ R+ TF WP S V PE LA GFYY+ + D
Sbjct: 7 AARMRTFMYWPSSVPVQPEQLASAGFYYVGRND 39
>pdb|1JD6|A Chain A, Crystal Structure Of Diap1-bir2/hid Complex
pdb|1JD5|A Chain A, Crystal Structure Of Diap1-Bir2GRIM
pdb|1JD4|A Chain A, Crystal Structure Of Diap1-Bir2
pdb|1JD4|B Chain B, Crystal Structure Of Diap1-Bir2
pdb|1Q4Q|A Chain A, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|B Chain B, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|C Chain C, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|D Chain D, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|E Chain E, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|F Chain F, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|G Chain G, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|H Chain H, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|I Chain I, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|J Chain J, Crystal Structure Of A Diap1-Dronc Complex
Length = 124
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
P++P + +R+ TF WPR+ P LA AGFFY G GD VRCF C GGL W D
Sbjct: 18 PQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDND 77
Query: 448 EPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDE 485
EPW +HA W +C FV L+KG+ +I DT+ A P + +E
Sbjct: 78 EPWEQHALWLSQCRFVKLMKGQLYI-DTVAAKPVLAEE 114
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%)
Query: 3 FERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHR 62
E +RLRTF++WP N ++A+AGFFYTG V+CF+CG + +W ND +H
Sbjct: 25 IETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQHA 84
Query: 63 AKDPGCPFVK 72
C FVK
Sbjct: 85 LWLSQCRFVK 94
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%)
Query: 139 FERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHR 198
E +RLRTF++WP N ++A+AGFFYTG V+CF+CG + +W ND +H
Sbjct: 25 IETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQHA 84
Query: 199 AKDPGCPFVK 208
C FVK
Sbjct: 85 LWLSQCRFVK 94
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 212 ASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVII 271
ASGN + E Y +E+ RL TF WP + P LA+ GF+Y GD+V+C C +
Sbjct: 12 ASGNYFPQYPE-YAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGL 70
Query: 272 GRWEQGDNAESEHKRQSPNCPFL 294
W D +H C F+
Sbjct: 71 MDWNDNDEPWEQHALWLSQCRFV 93
>pdb|3MUP|A Chain A, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac037
pdb|3MUP|B Chain B, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac037
pdb|3MUP|C Chain C, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac037
pdb|3MUP|D Chain D, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac037
pdb|3OZ1|A Chain A, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac066
pdb|3OZ1|B Chain B, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac066
pdb|3OZ1|C Chain C, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac066
pdb|3OZ1|D Chain D, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac066
pdb|4EB9|A Chain A, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
pdb|4EB9|B Chain B, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
pdb|4EB9|C Chain C, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
pdb|4EB9|D Chain D, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
Length = 122
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 66/98 (67%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
++ T +R+ TF WP P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D+PW
Sbjct: 16 SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWV 75
Query: 452 EHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFT 489
EHA+WFP C F++ +KG++F+++ P + +++ T
Sbjct: 76 EHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLST 113
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 207 VKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAY 266
++N + SI N + + + R+ TF WP S V PE LA GFYY+ + D VKC
Sbjct: 1 MENSLETLRFSISNLSM-QTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFC 59
Query: 267 CSVIIGRWEQGDNAESEHKRQSPNCPFLAR 296
C + WE GD+ EH + P C FL R
Sbjct: 60 CDGGLRCWESGDDPWVEHAKWFPRCEFLIR 89
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 130 ISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTY 189
S +++M +R+RTF WPS+ PV +++A AGF+Y G +V+CF C + W
Sbjct: 10 FSISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWES 69
Query: 190 NDSVMAKHRAKDPGCPFV 207
D +H P C F+
Sbjct: 70 GDDPWVEHAKWFPRCEFL 87
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M +R+RTF WPS+ PV +++A AGF+Y G +V+CF C + W D +
Sbjct: 17 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 76
Query: 61 HRAKDPGCPFV 71
H P C F+
Sbjct: 77 HAKWFPRCEFL 87
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 71 VKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGD 124
++N + SI N + + + R+ TF WP S V PE LA GFYY+ + D
Sbjct: 1 MENSLETLRFSISNLSM-QTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRND 53
>pdb|1QBH|A Chain A, Solution Structure Of A Baculoviral Inhibitor Of Apoptosis
(Iap) Repeat
Length = 101
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 66/98 (67%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
++ T +R+ TF WP P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D+PW
Sbjct: 3 HMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWV 62
Query: 452 EHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFT 489
EHA+WFP C F++ +KG++F+++ P + +++ T
Sbjct: 63 EHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLST 100
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 39/72 (54%)
Query: 225 KLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEH 284
+ + R+ TF WP S V PE LA GFYY+ + D VKC C + WE GD+ EH
Sbjct: 5 QTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEH 64
Query: 285 KRQSPNCPFLAR 296
+ P C FL R
Sbjct: 65 AKWFPRCEFLIR 76
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M +R+RTF WPS+ PV +++A AGF+Y G +V+CF C + W D +
Sbjct: 4 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 63
Query: 61 HRAKDPGCPFV 71
H P C F+
Sbjct: 64 HAKWFPRCEFL 74
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
M +R+RTF WPS+ PV +++A AGF+Y G +V+CF C + W D +
Sbjct: 4 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 63
Query: 197 HRAKDPGCPFV 207
H P C F+
Sbjct: 64 HAKWFPRCEFL 74
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 89 KLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGD 124
+ + R+ TF WP S V PE LA GFYY+ + D
Sbjct: 5 QTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRND 40
>pdb|4HY4|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To T3170284
pdb|4HY4|B Chain B, Crystal Structure Of Ciap1 Bir3 Bound To T3170284
pdb|4HY5|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To T3256336
pdb|4HY5|B Chain B, Crystal Structure Of Ciap1 Bir3 Bound To T3256336
Length = 115
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 11/103 (10%)
Query: 372 QGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWV 431
QG + +L +Q H +R+ TF WP P+ P+ LA AGF+Y G+ D V
Sbjct: 19 QGGSSISNLSMQTHA-----------ARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDV 67
Query: 432 RCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFIED 474
+CF CDGGLR W + D+PW EHA+WFP C F++ +KG++F+++
Sbjct: 68 KCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDE 110
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 208 KNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYC 267
+N G SI N + + + R+ TF WP S V PE LA GFYY+ + D VKC C
Sbjct: 14 ENLYFQGGSSISNLSM-QTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCC 72
Query: 268 SVIIGRWEQGDNAESEHKRQSPNCPFLAR 296
+ WE GD+ EH + P C FL R
Sbjct: 73 DGGLRCWESGDDPWVEHAKWFPRCEFLIR 101
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 123 GDKKYFL--ISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFAC 180
G+ YF S +++M +R+RTF WPS+ PV +++A AGF+Y G +V+CF C
Sbjct: 13 GENLYFQGGSSISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCC 72
Query: 181 GVKISNWTYNDSVMAKHRAKDPGCPFV 207
+ W D +H P C F+
Sbjct: 73 DGGLRCWESGDDPWVEHAKWFPRCEFL 99
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M +R+RTF WPS+ PV +++A AGF+Y G +V+CF C + W D +
Sbjct: 29 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 88
Query: 61 HRAKDPGCPFV 71
H P C F+
Sbjct: 89 HAKWFPRCEFL 99
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 72 KNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGD 124
+N G SI N + + + R+ TF WP S V PE LA GFYY+ + D
Sbjct: 14 ENLYFQGGSSISNLSM-QTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRND 65
>pdb|3D9T|A Chain A, Ciap1-Bir3 In Complex With N-Terminal Peptide From
Caspase- 9 (Atpfqe)
pdb|3D9T|B Chain B, Ciap1-Bir3 In Complex With N-Terminal Peptide From
Caspase- 9 (Atpfqe)
pdb|3D9U|A Chain A, The Bir3 Domain Of Ciap1 In Complex With The N Terminal
Peptide From SmacDIABLO (AVPIAQ)
Length = 97
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 60/83 (72%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
++ T +R+ TF WP P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D+PW
Sbjct: 10 SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWV 69
Query: 452 EHARWFPECHFVMLVKGEQFIED 474
EHA+WFP C F++ +KG++F+++
Sbjct: 70 EHAKWFPRCEFLIRMKGQEFVDE 92
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 217 SIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQ 276
SI N + + + R+ TF WP S V PE LA GFYY+ + D VKC C + WE
Sbjct: 5 SISNLSM-QTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWES 63
Query: 277 GDNAESEHKRQSPNCPFLAR 296
GD+ EH + P C FL R
Sbjct: 64 GDDPWVEHAKWFPRCEFLIR 83
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 131 SFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYN 190
S +++M +R+RTF WPS+ PV +++A AGF+Y G +V+CF C + W
Sbjct: 5 SISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESG 64
Query: 191 DSVMAKHRAKDPGCPFV 207
D +H P C F+
Sbjct: 65 DDPWVEHAKWFPRCEFL 81
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M +R+RTF WPS+ PV +++A AGF+Y G +V+CF C + W D +
Sbjct: 11 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 70
Query: 61 HRAKDPGCPFV 71
H P C F+
Sbjct: 71 HAKWFPRCEFL 81
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 81 SIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGD 124
SI N + + + R+ TF WP S V PE LA GFYY+ + D
Sbjct: 5 SISNLSM-QTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRND 47
>pdb|1TW6|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A 9MER PEPTIDE
DERIVED From Smac
pdb|1TW6|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A 9MER PEPTIDE
DERIVED From Smac
Length = 133
Score = 98.6 bits (244), Expect = 9e-21, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 58/89 (65%)
Query: 386 RVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTA 445
R P P + + + R+ +F WP + + P+ LA AGFF+ G D VRCF C GGL+ W
Sbjct: 38 RGPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKR 97
Query: 446 MDEPWSEHARWFPECHFVMLVKGEQFIED 474
D+PW+EHA+WFP C F++ KG+++I +
Sbjct: 98 GDDPWTEHAKWFPGCQFLLRSKGQEYINN 126
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 227 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
E RLA+F +WP++ V PE LA GF++ DKV+C +C + W++GD+ +EH +
Sbjct: 48 EELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAK 107
Query: 287 QSPNCPFLARDNQATQANMINL 308
P C FL R N I+L
Sbjct: 108 WFPGCQFLLRSKGQEYINNIHL 129
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M E RL +F WP + V + +A AGFF+TGHQ +V+CF C + +W D +
Sbjct: 45 MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 104
Query: 61 HRAKDPGCPFV 71
H PGC F+
Sbjct: 105 HAKWFPGCQFL 115
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
M E RL +F WP + V + +A AGFF+TGHQ +V+CF C + +W D +
Sbjct: 45 MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 104
Query: 197 HRAKDPGCPFV 207
H PGC F+
Sbjct: 105 HAKWFPGCQFL 115
Score = 36.2 bits (82), Expect = 0.046, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 91 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 125
E RLA+F +WP++ V PE LA GF++ DK
Sbjct: 48 EELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDK 82
>pdb|3UW4|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To Gdc0152
Length = 92
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 59/83 (71%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
++ T +R+ TF WP P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D+PW
Sbjct: 3 HMQTHAARMRTFMYWPSSVPVQPEQLAAAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWV 62
Query: 452 EHARWFPECHFVMLVKGEQFIED 474
EHA+WFP C F++ +KG+++I +
Sbjct: 63 EHAKWFPGCEFLIRMKGQEYINN 85
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 43/84 (51%)
Query: 225 KLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEH 284
+ + R+ TF WP S V PE LA GFYY+ + D VKC C + WE GD+ EH
Sbjct: 5 QTHAARMRTFMYWPSSVPVQPEQLAAAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEH 64
Query: 285 KRQSPNCPFLARDNQATQANMINL 308
+ P C FL R N I+L
Sbjct: 65 AKWFPGCEFLIRMKGQEYINNIHL 88
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M +R+RTF WPS+ PV +++A AGF+Y G +V+CF+C + W D +
Sbjct: 4 MQTHAARMRTFMYWPSSVPVQPEQLAAAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVE 63
Query: 61 HRAKDPGCPFV---KNPEASGNVSIEN 84
H PGC F+ K E N+ + +
Sbjct: 64 HAKWFPGCEFLIRMKGQEYINNIHLTH 90
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
M +R+RTF WPS+ PV +++A AGF+Y G +V+CF+C + W D +
Sbjct: 4 MQTHAARMRTFMYWPSSVPVQPEQLAAAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVE 63
Query: 197 HRAKDPGCPFV---KNPEASGNVSIEN 220
H PGC F+ K E N+ + +
Sbjct: 64 HAKWFPGCEFLIRMKGQEYINNIHLTH 90
>pdb|2I3H|A Chain A, Structure Of An Ml-iap/xiap Chimera Bound To A 4-mer
Peptide (avpw)
pdb|2I3H|B Chain B, Structure Of An Ml-iap/xiap Chimera Bound To A 4-mer
Peptide (avpw)
pdb|2I3I|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|2I3I|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|3F7H|A Chain A, Structure Of An Ml-iap/xiap Chimera Bound To A
Peptidomimetic
pdb|3F7H|B Chain B, Structure Of An Ml-iap/xiap Chimera Bound To A
Peptidomimetic
pdb|3F7I|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|3F7I|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|3GT9|A Chain A, Structure Of An Ml-iap/xiap Chimera Bound To A
Peptidomimetic
pdb|3GT9|B Chain B, Structure Of An Ml-iap/xiap Chimera Bound To A
Peptidomimetic
pdb|3GTA|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|3GTA|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
Length = 133
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 58/89 (65%)
Query: 386 RVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTA 445
R P P + + + R+ +F WP + + P+ LA AGFF+ G D VRCF C GGL+ W
Sbjct: 38 RGPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKR 97
Query: 446 MDEPWSEHARWFPECHFVMLVKGEQFIED 474
D+PW+EHA+WFP C F++ KG+++I +
Sbjct: 98 GDDPWTEHAKWFPGCQFLLRSKGQEYINN 126
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 227 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
E RLA+F +WP++ V PE LA GF++ DKV+C +C + W++GD+ +EH +
Sbjct: 48 EELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAK 107
Query: 287 QSPNCPFLARDNQATQANMINL 308
P C FL R N I+L
Sbjct: 108 WFPGCQFLLRSKGQEYINNIHL 129
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M E RL +F WP + V + +A AGFF+TGHQ +V+CF C + +W D +
Sbjct: 45 MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 104
Query: 61 HRAKDPGCPFV 71
H PGC F+
Sbjct: 105 HAKWFPGCQFL 115
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
M E RL +F WP + V + +A AGFF+TGHQ +V+CF C + +W D +
Sbjct: 45 MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 104
Query: 197 HRAKDPGCPFV 207
H PGC F+
Sbjct: 105 HAKWFPGCQFL 115
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 91 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 125
E RLA+F +WP++ V PE LA GF++ DK
Sbjct: 48 EELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDK 82
>pdb|3UW5|A Chain A, Crystal Structure Of The Bir Domain Of Mliap Bound To
Gdc0152
pdb|3UW5|B Chain B, Crystal Structure Of The Bir Domain Of Mliap Bound To
Gdc0152
Length = 116
Score = 97.8 bits (242), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 58/89 (65%)
Query: 386 RVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTA 445
R P P + + + R+ +F WP + + P+ LA AGFF+ G D VRCF C GGL+ W
Sbjct: 21 RGPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKR 80
Query: 446 MDEPWSEHARWFPECHFVMLVKGEQFIED 474
D+PW+EHA+WFP C F++ KG+++I +
Sbjct: 81 GDDPWTEHAKWFPGCQFLLRSKGQEYINN 109
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 227 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
E RLA+F +WP++ V PE LA GF++ DKV+C +C + W++GD+ +EH +
Sbjct: 31 EELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAK 90
Query: 287 QSPNCPFLARDNQATQANMINL 308
P C FL R N I+L
Sbjct: 91 WFPGCQFLLRSKGQEYINNIHL 112
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M E RL +F WP + V + +A AGFF+TGHQ +V+CF C + +W D +
Sbjct: 28 MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 87
Query: 61 HRAKDPGCPFV 71
H PGC F+
Sbjct: 88 HAKWFPGCQFL 98
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
M E RL +F WP + V + +A AGFF+TGHQ +V+CF C + +W D +
Sbjct: 28 MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 87
Query: 197 HRAKDPGCPFV 207
H PGC F+
Sbjct: 88 HAKWFPGCQFL 98
Score = 36.2 bits (82), Expect = 0.053, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 91 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 125
E RLA+F +WP++ V PE LA GF++ DK
Sbjct: 31 EELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDK 65
>pdb|1OXN|A Chain A, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXN|B Chain B, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXN|C Chain C, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXN|D Chain D, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXN|E Chain E, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|A Chain A, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|B Chain B, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|C Chain C, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|D Chain D, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|E Chain E, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OY7|A Chain A, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
pdb|1OY7|B Chain B, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
pdb|1OY7|C Chain C, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
pdb|1OY7|D Chain D, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
pdb|1OY7|E Chain E, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
Length = 140
Score = 97.1 bits (240), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/87 (44%), Positives = 55/87 (63%)
Query: 386 RVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTA 445
R P P + + + R+ +F WP + + P+ LA AGFF+ G D VRCF C GGL+ W
Sbjct: 38 RGPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKR 97
Query: 446 MDEPWSEHARWFPECHFVMLVKGEQFI 472
D+PW+EHA+WFP C F++ KG F+
Sbjct: 98 GDDPWTEHAKWFPSCQFLLRSKGRDFV 124
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 227 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
E RLA+F +WP++ V PE LA GF++ DKV+C +C + W++GD+ +EH +
Sbjct: 48 EELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAK 107
Query: 287 QSPNCPFLAR 296
P+C FL R
Sbjct: 108 WFPSCQFLLR 117
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M E RL +F WP + V + +A AGFF+TGHQ +V+CF C + +W D +
Sbjct: 45 MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 104
Query: 61 HRAKDPGCPFV 71
H P C F+
Sbjct: 105 HAKWFPSCQFL 115
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
M E RL +F WP + V + +A AGFF+TGHQ +V+CF C + +W D +
Sbjct: 45 MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 104
Query: 197 HRAKDPGCPFV 207
H P C F+
Sbjct: 105 HAKWFPSCQFL 115
Score = 35.8 bits (81), Expect = 0.056, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 91 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 125
E RLA+F +WP++ V PE LA GF++ DK
Sbjct: 48 EELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDK 82
>pdb|2UVL|A Chain A, Human Bir3 Domain Of Baculoviral Inhibitor Of Apoptosis
Repeat-Containing 3 (Birc3)
pdb|2UVL|B Chain B, Human Bir3 Domain Of Baculoviral Inhibitor Of Apoptosis
Repeat-Containing 3 (Birc3)
Length = 96
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 55/84 (65%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
++ T +R TF WP + P+ LA AGF+Y G D V+CF CDGGLR W + D+PW
Sbjct: 10 SMQTHAARFKTFFNWPSSVLVNPEQLASAGFYYVGNSDDVKCFCCDGGLRCWESGDDPWV 69
Query: 452 EHARWFPECHFVMLVKGEQFIEDT 475
+HA+WFP C +++ +KG++FI
Sbjct: 70 QHAKWFPRCEYLIRIKGQEFIRQV 93
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%)
Query: 225 KLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEH 284
+ + R TF NWP S +V PE LA GFYY+ D VKC C + WE GD+ +H
Sbjct: 12 QTHAARFKTFFNWPSSVLVNPEQLASAGFYYVGNSDDVKCFCCDGGLRCWESGDDPWVQH 71
Query: 285 KRQSPNCPFLAR 296
+ P C +L R
Sbjct: 72 AKWFPRCEYLIR 83
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 134 SITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSV 193
+++M +R +TF +WPS+ V+ +++A AGF+Y G+ +V+CF C + W D
Sbjct: 8 NLSMQTHAARFKTFFNWPSSVLVNPEQLASAGFYYVGNSDDVKCFCCDGGLRCWESGDDP 67
Query: 194 MAKHRAKDPGCPFV 207
+H P C ++
Sbjct: 68 WVQHAKWFPRCEYL 81
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M +R +TF +WPS+ V+ +++A AGF+Y G+ +V+CF C + W D +
Sbjct: 11 MQTHAARFKTFFNWPSSVLVNPEQLASAGFYYVGNSDDVKCFCCDGGLRCWESGDDPWVQ 70
Query: 61 HRAKDPGCPFV 71
H P C ++
Sbjct: 71 HAKWFPRCEYL 81
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 89 KLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGD 124
+ + R TF NWP S +V PE LA GFYY+ D
Sbjct: 12 QTHAARFKTFFNWPSSVLVNPEQLASAGFYYVGNSD 47
>pdb|3HL5|A Chain A, Crystal Structure Of Xiap Bir3 With Cs3
pdb|3HL5|B Chain B, Crystal Structure Of Xiap Bir3 With Cs3
Length = 95
Score = 93.2 bits (230), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Query: 384 NHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKW 443
+H +P++P+++ ++R+ TF TW + + LA AGF+ G+GD V+CFHC GGL W
Sbjct: 2 SHMLPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDW 59
Query: 444 TAMDEPWSEHARWFPECHFVMLVKGEQFIED 474
++PW +HA+W+P C +++ KG+++I +
Sbjct: 60 KPSEDPWEQHAKWYPGCKYLLEQKGQEYINN 90
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 229 GRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQS 288
R+ TF W S V E LA+ GFY L +GDKVKC +C + W+ ++ +H +
Sbjct: 16 ARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWY 73
Query: 289 PNCPFLARDNQATQANMINL 308
P C +L N I+L
Sbjct: 74 PGCKYLLEQKGQEYINNIHL 93
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ +M +R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++
Sbjct: 7 RNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSED 64
Query: 193 VMAKHRAKDPGCPFV 207
+H PGC ++
Sbjct: 65 PWEQHAKWYPGCKYL 79
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 6 SRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKD 65
+R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++ +H
Sbjct: 16 ARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWY 73
Query: 66 PGCPFV 71
PGC ++
Sbjct: 74 PGCKYL 79
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 343 GRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
R+ TF W S V E LA+ GFY L +GDK
Sbjct: 16 ARIFTFGTWIYS--VNKEQLARAGFYALGEGDK 46
>pdb|3F7G|A Chain A, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
pdb|3F7G|B Chain B, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
pdb|3F7G|C Chain C, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
pdb|3F7G|D Chain D, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
pdb|3F7G|E Chain E, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
Length = 140
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 57/94 (60%)
Query: 386 RVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTA 445
R P P + + + R+ +F WP + + P+ LA AGFF+ G D VRCF C GGL+ W
Sbjct: 38 RGPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKR 97
Query: 446 MDEPWSEHARWFPECHFVMLVKGEQFIEDTIKAN 479
D+PW+EHA+WFP C F++ KG F+ + +
Sbjct: 98 GDDPWTEHAKWFPSCQFLLRSKGRDFVHSVQETH 131
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 227 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
E RLA+F +WP++ V PE LA GF++ DKV+C +C + W++GD+ +EH +
Sbjct: 48 EELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAK 107
Query: 287 QSPNCPFLAR 296
P+C FL R
Sbjct: 108 WFPSCQFLLR 117
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M E RL +F WP + V + +A AGFF+TGHQ +V+CF C + +W D +
Sbjct: 45 MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 104
Query: 61 HRAKDPGCPFV 71
H P C F+
Sbjct: 105 HAKWFPSCQFL 115
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
M E RL +F WP + V + +A AGFF+TGHQ +V+CF C + +W D +
Sbjct: 45 MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 104
Query: 197 HRAKDPGCPFV 207
H P C F+
Sbjct: 105 HAKWFPSCQFL 115
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 91 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 125
E RLA+F +WP++ V PE LA GF++ DK
Sbjct: 48 EELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDK 82
>pdb|3CLX|D Chain D, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac005
pdb|3CLX|A Chain A, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac005
pdb|3CLX|B Chain B, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac005
pdb|3CLX|C Chain C, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac005
pdb|3CM2|D Chain D, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|A Chain A, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|B Chain B, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|C Chain C, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|E Chain E, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|F Chain F, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|G Chain G, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|H Chain H, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|I Chain I, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|J Chain J, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM7|C Chain C, Crystal Structure Of Xiap-Bir3 Domain In Complex With
Smac- Mimetic Compuond, Smac005
pdb|3CM7|A Chain A, Crystal Structure Of Xiap-Bir3 Domain In Complex With
Smac- Mimetic Compuond, Smac005
pdb|3CM7|B Chain B, Crystal Structure Of Xiap-Bir3 Domain In Complex With
Smac- Mimetic Compuond, Smac005
pdb|3CM7|D Chain D, Crystal Structure Of Xiap-Bir3 Domain In Complex With
Smac- Mimetic Compuond, Smac005
Length = 130
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
+P++P+++ ++R+ TF TW + + LA AGF+ G+GD V+CFHC GGL W
Sbjct: 30 LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 87
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
++PW +HA+W+P C +++ KG+++I +
Sbjct: 88 EDPWEQHAKWYPGCKYLLEQKGQEYINN 115
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 230 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSP 289
R+ TF W S V E LA+ GFY L +GDKVKC +C + W+ ++ +H + P
Sbjct: 42 RIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYP 99
Query: 290 NCPFLARDNQATQANMINL 308
C +L N I+L
Sbjct: 100 GCKYLLEQKGQEYINNIHL 118
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ +M +R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++
Sbjct: 32 RNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSED 89
Query: 193 VMAKHRAKDPGCPFVKNPEASGNVSIEN 220
+H PGC ++ E G I N
Sbjct: 90 PWEQHAKWYPGCKYLL--EQKGQEYINN 115
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 6 SRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKD 65
+R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++ +H
Sbjct: 41 ARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWY 98
Query: 66 PGCPFVKNPEASGNVSIEN 84
PGC ++ E G I N
Sbjct: 99 PGCKYLL--EQKGQEYINN 115
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 344 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
R+ TF W S V E LA+ GFY L +GDK
Sbjct: 42 RIFTFGTWIYS--VNKEQLARAGFYALGEGDK 71
>pdb|1G73|C Chain C, Crystal Structure Of Smac Bound To Xiap-Bir3 Domain
pdb|1G73|D Chain D, Crystal Structure Of Smac Bound To Xiap-Bir3 Domain
Length = 121
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
+P++P+++ ++R+ TF TW + + LA AGF+ G+GD V+CFHC GGL W
Sbjct: 19 LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 76
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
++PW +HA+W+P C +++ KG+++I +
Sbjct: 77 EDPWEQHAKWYPGCKYLLEQKGQEYINN 104
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 229 GRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQS 288
R+ TF W S V E LA+ GFY L +GDKVKC +C + W+ ++ +H +
Sbjct: 30 ARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWY 87
Query: 289 PNCPFLARDNQATQANMINL 308
P C +L N I+L
Sbjct: 88 PGCKYLLEQKGQEYINNIHL 107
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ +M +R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++
Sbjct: 21 RNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSED 78
Query: 193 VMAKHRAKDPGCPFVKNPEASGNVSIEN 220
+H PGC ++ E G I N
Sbjct: 79 PWEQHAKWYPGCKYLL--EQKGQEYINN 104
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 6 SRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKD 65
+R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++ +H
Sbjct: 30 ARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWY 87
Query: 66 PGCPFVKNPEASGNVSIEN 84
PGC ++ E G I N
Sbjct: 88 PGCKYLL--EQKGQEYINN 104
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 343 GRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
R+ TF W S V E LA+ GFY L +GDK
Sbjct: 30 ARIFTFGTWIYS--VNKEQLARAGFYALGEGDK 60
>pdb|4HY0|A Chain A, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|B Chain B, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|C Chain C, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|D Chain D, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|E Chain E, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|F Chain F, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|G Chain G, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|H Chain H, Crystal Structure Of Xiap Bir3 With T3256336
Length = 125
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
+P++P+++ ++R+ TF TW + + LA AGF+ G+GD V+CFHC GGL W
Sbjct: 24 LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 81
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
++PW +HA+W+P C +++ KG+++I +
Sbjct: 82 EDPWEQHAKWYPGCKYLLEQKGQEYINN 109
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 230 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSP 289
R+ TF W S V E LA+ GFY L +GDKVKC +C + W+ ++ +H + P
Sbjct: 36 RIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYP 93
Query: 290 NCPFLARDNQATQANMINL 308
C +L N I+L
Sbjct: 94 GCKYLLEQKGQEYINNIHL 112
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ +M +R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++
Sbjct: 26 RNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSED 83
Query: 193 VMAKHRAKDPGCPFVKNPEASGNVSIEN 220
+H PGC ++ E G I N
Sbjct: 84 PWEQHAKWYPGCKYLL--EQKGQEYINN 109
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 6 SRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAKD 65
+R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++ +H
Sbjct: 35 ARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWY 92
Query: 66 PGCPFVKNPEASGNVSIEN 84
PGC ++ E G I N
Sbjct: 93 PGCKYLL--EQKGQEYINN 109
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 344 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
R+ TF W S V E LA+ GFY L +GDK
Sbjct: 36 RIFTFGTWIYS--VNKEQLARAGFYALGEGDK 65
>pdb|3EYL|A Chain A, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound
pdb|3EYL|B Chain B, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound
pdb|3G76|A Chain A, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|B Chain B, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|C Chain C, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|D Chain D, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|E Chain E, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|F Chain F, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|G Chain G, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|H Chain H, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|4EC4|A Chain A, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|B Chain B, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|C Chain C, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|D Chain D, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|E Chain E, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|J Chain J, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|F Chain F, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|G Chain G, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|K Chain K, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|L Chain L, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
Length = 122
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
+P++P+++ ++R+ TF TW + + LA AGF+ G+GD V+CFHC GGL W
Sbjct: 16 LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 73
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
++PW +HA+W+P C +++ KG+++I +
Sbjct: 74 EDPWEQHAKWYPGCKYLLEQKGQEYINN 101
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 229 GRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQS 288
R+ TF W S V E LA+ GFY L +GDKVKC +C + W+ ++ +H +
Sbjct: 27 ARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWY 84
Query: 289 PNCPFLARDNQATQANMINL 308
P C +L N I+L
Sbjct: 85 PGCKYLLEQKGQEYINNIHL 104
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ +M +R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++
Sbjct: 18 RNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSED 75
Query: 193 VMAKHRAKDPGCPFVKNPEASGNVSIEN 220
+H PGC ++ E G I N
Sbjct: 76 PWEQHAKWYPGCKYLL--EQKGQEYINN 101
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 5 RSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAK 64
+R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++ +H
Sbjct: 26 EARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKW 83
Query: 65 DPGCPFVKNPEASGNVSIEN 84
PGC ++ E G I N
Sbjct: 84 YPGCKYLL--EQKGQEYINN 101
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 343 GRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
R+ TF W S V E LA+ GFY L +GDK
Sbjct: 27 ARIFTFGTWIYS--VNKEQLARAGFYALGEGDK 57
>pdb|2JK7|A Chain A, Xiap Bir3 Bound To A Smac Mimetic
Length = 116
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
+P++P+++ ++R+ TF TW + + LA AGF+ G+GD V+CFHC GGL W
Sbjct: 16 LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 73
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
++PW +HA+W+P C +++ KG+++I +
Sbjct: 74 EDPWEQHAKWYPGCKYLLEQKGQEYINN 101
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 229 GRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQS 288
R+ TF W S V E LA+ GFY L +GDKVKC +C + W+ ++ +H +
Sbjct: 27 ARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWY 84
Query: 289 PNCPFLARDNQATQANMINL 308
P C +L N I+L
Sbjct: 85 PGCKYLLEQKGQEYINNIHL 104
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ +M +R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++
Sbjct: 18 RNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSED 75
Query: 193 VMAKHRAKDPGCPFVKNPEASGNVSIEN 220
+H PGC ++ E G I N
Sbjct: 76 PWEQHAKWYPGCKYLL--EQKGQEYINN 101
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 5 RSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAK 64
+R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++ +H
Sbjct: 26 EARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKW 83
Query: 65 DPGCPFVKNPEASGNVSIEN 84
PGC ++ E G I N
Sbjct: 84 YPGCKYLL--EQKGQEYINN 101
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 343 GRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
R+ TF W S V E LA+ GFY L +GDK
Sbjct: 27 ARIFTFGTWIYS--VNKEQLARAGFYALGEGDK 57
>pdb|1G3F|A Chain A, Nmr Structure Of A 9 Residue Peptide From SmacDIABLO
Complexed To The Bir3 Domain Of Xiap
pdb|1TFQ|A Chain A, Nmr Structure Of An Antagonists Of The Xiap-Caspase-9
Interaction Complexed To The Bir3 Domain Of Xiap
pdb|1TFT|A Chain A, Nmr Structure Of An Antagonists Of The Xiap-Caspase-9
Interaction Complexed To The Bir3 Domain Of Xiap
Length = 117
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
+P++P+++ ++R+ TF TW + + LA AGF+ G+GD V+CFHC GGL W
Sbjct: 17 LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 74
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
++PW +HA+W+P C +++ KG+++I +
Sbjct: 75 EDPWEQHAKWYPGCKYLLEQKGQEYINN 102
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 229 GRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQS 288
R+ TF W S V E LA+ GFY L +GDKVKC +C + W+ ++ +H +
Sbjct: 28 ARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWY 85
Query: 289 PNCPFLARDNQATQANMINL 308
P C +L N I+L
Sbjct: 86 PGCKYLLEQKGQEYINNIHL 105
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ +M +R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++
Sbjct: 19 RNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSED 76
Query: 193 VMAKHRAKDPGCPFVKNPEASGNVSIEN 220
+H PGC ++ E G I N
Sbjct: 77 PWEQHAKWYPGCKYLL--EQKGQEYINN 102
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 5 RSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAK 64
+R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++ +H
Sbjct: 27 EARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKW 84
Query: 65 DPGCPFVKNPEASGNVSIEN 84
PGC ++ E G I N
Sbjct: 85 YPGCKYLL--EQKGQEYINN 102
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 343 GRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
R+ TF W S V E LA+ GFY L +GDK
Sbjct: 28 ARIFTFGTWIYS--VNKEQLARAGFYALGEGDK 58
>pdb|1F9X|A Chain A, Average Nmr Solution Structure Of The Bir-3 Domain Of Xiap
Length = 120
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
+P++P+++ ++R+ TF TW + + LA AGF+ G+GD V+CFHC GGL W
Sbjct: 20 LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 77
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
++PW +HA+W+P C +++ KG+++I +
Sbjct: 78 EDPWEQHAKWYPGCKYLLEQKGQEYINN 105
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 230 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSP 289
R+ TF W S V E LA+ GFY L +GDKVKC +C + W+ ++ +H + P
Sbjct: 32 RIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYP 89
Query: 290 NCPFLARDNQATQANMINL 308
C +L N I+L
Sbjct: 90 GCKYLLEQKGQEYINNIHL 108
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ +M +R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++
Sbjct: 22 RNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSED 79
Query: 193 VMAKHRAKDPGCPFVKNPEASGNVSIEN 220
+H PGC ++ E G I N
Sbjct: 80 PWEQHAKWYPGCKYLL--EQKGQEYINN 105
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 5 RSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAK 64
+R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++ +H
Sbjct: 30 EARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKW 87
Query: 65 DPGCPFVKNPEASGNVSIEN 84
PGC ++ E G I N
Sbjct: 88 YPGCKYLL--EQKGQEYINN 105
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 344 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
R+ TF W S V E LA+ GFY L +GDK
Sbjct: 32 RIFTFGTWIYS--VNKEQLARAGFYALGEGDK 61
>pdb|2OPZ|A Chain A, Avpf Bound To Bir3-Xiap
pdb|2OPZ|B Chain B, Avpf Bound To Bir3-Xiap
pdb|2OPZ|C Chain C, Avpf Bound To Bir3-Xiap
pdb|2OPZ|D Chain D, Avpf Bound To Bir3-Xiap
Length = 109
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
+P++P+++ ++R+ TF TW + + LA AGF+ G+GD V+CFHC GGL W
Sbjct: 8 LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 65
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
++PW +HA+W+P C +++ KG+++I +
Sbjct: 66 EDPWEQHAKWYPGCKYLLEQKGQEYINN 93
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 230 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSP 289
R+ TF W S V E LA+ GFY L +GDKVKC +C + W+ ++ +H + P
Sbjct: 20 RIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYP 77
Query: 290 NCPFLARDNQATQANMINL 308
C +L N I+L
Sbjct: 78 GCKYLLEQKGQEYINNIHL 96
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ +M +R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++
Sbjct: 10 RNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSED 67
Query: 193 VMAKHRAKDPGCPFVKNPEASGNVSIEN 220
+H PGC ++ E G I N
Sbjct: 68 PWEQHAKWYPGCKYLL--EQKGQEYINN 93
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 5 RSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAK 64
+R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++ +H
Sbjct: 18 EARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKW 75
Query: 65 DPGCPFVKNPEASGNVSIEN 84
PGC ++ E G I N
Sbjct: 76 YPGCKYLL--EQKGQEYINN 93
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 344 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
R+ TF W S V E LA+ GFY L +GDK
Sbjct: 20 RIFTFGTWIYS--VNKEQLARAGFYALGEGDK 49
>pdb|2OPY|A Chain A, Smac Mimic Bound To Bir3-Xiap
Length = 106
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
+P++P+++ ++R+ TF TW + + LA AGF+ G+GD V+CFHC GGL W
Sbjct: 8 LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 65
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
++PW +HA+W+P C +++ KG+++I +
Sbjct: 66 EDPWEQHAKWYPGCKYLLEQKGQEYINN 93
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 230 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSP 289
R+ TF W S V E LA+ GFY L +GDKVKC +C + W+ ++ +H + P
Sbjct: 20 RIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYP 77
Query: 290 NCPFLARDNQATQANMINL 308
C +L N I+L
Sbjct: 78 GCKYLLEQKGQEYINNIHL 96
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ +M +R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++
Sbjct: 10 RNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSED 67
Query: 193 VMAKHRAKDPGCPFVKNPEASGNVSIEN 220
+H PGC ++ E G I N
Sbjct: 68 PWEQHAKWYPGCKYLL--EQKGQEYINN 93
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 5 RSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAK 64
+R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++ +H
Sbjct: 18 EARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKW 75
Query: 65 DPGCPFVKNPEASGNVSIEN 84
PGC ++ E G I N
Sbjct: 76 YPGCKYLL--EQKGQEYINN 93
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 344 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
R+ TF W S V E LA+ GFY L +GDK
Sbjct: 20 RIFTFGTWIYS--VNKEQLARAGFYALGEGDK 49
>pdb|1NW9|A Chain A, Structure Of Caspase-9 In An Inhibitory Complex With Xiap-
Bir3
Length = 98
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
+P++P+++ ++R+ TF TW + + LA AGF+ G+GD V+CFHC GGL W
Sbjct: 4 LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 61
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
++PW +HA+W+P C +++ KG+++I +
Sbjct: 62 EDPWEQHAKWYPGCKYLLEQKGQEYINN 89
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 230 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSP 289
R+ TF W S V E LA+ GFY L +GDKVKC +C + W+ ++ +H + P
Sbjct: 16 RIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYP 73
Query: 290 NCPFLARDNQATQANMINL 308
C +L N I+L
Sbjct: 74 GCKYLLEQKGQEYINNIHL 92
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ +M +R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++
Sbjct: 6 RNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSED 63
Query: 193 VMAKHRAKDPGCPFVKNPEASGNVSIEN 220
+H PGC ++ E G I N
Sbjct: 64 PWEQHAKWYPGCKYLL--EQKGQEYINN 89
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 5 RSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAK 64
+R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++ +H
Sbjct: 14 EARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKW 71
Query: 65 DPGCPFVKNPEASGNVSIEN 84
PGC ++ E G I N
Sbjct: 72 YPGCKYLL--EQKGQEYINN 89
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 344 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
R+ TF W S V E LA+ GFY L +GDK
Sbjct: 16 RIFTFGTWIYS--VNKEQLARAGFYALGEGDK 45
>pdb|2VSL|A Chain A, Crystal Structure Of Xiap Bir3 With A Bivalent Smac
Mimetic
Length = 96
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
+P++P+++ ++R+ TF TW + + LA AGF+ G+GD V+CFHC GGL W
Sbjct: 7 LPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPS 64
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
++PW +HA+W+P C +++ KG+++I +
Sbjct: 65 EDPWEQHAKWYPGCKYLLEQKGQEYINN 92
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 230 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSP 289
R+ TF W S V E LA+ GFY L +GDKVKC +C + W+ ++ +H + P
Sbjct: 19 RIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYP 76
Query: 290 NCPFLARDNQATQANMINL 308
C +L N I+L
Sbjct: 77 GCKYLLEQKGQEYINNIHL 95
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ +M +R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++
Sbjct: 9 RNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSED 66
Query: 193 VMAKHRAKDPGCPFVKNPEASGNVSIEN 220
+H PGC ++ E G I N
Sbjct: 67 PWEQHAKWYPGCKYLL--EQKGQEYINN 92
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 5 RSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRAK 64
+R+ TF +W + V+ +++A+AGF+ G +V+CF CG +++W ++ +H
Sbjct: 17 EARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKW 74
Query: 65 DPGCPFVKNPEASGNVSIEN 84
PGC ++ E G I N
Sbjct: 75 YPGCKYLL--EQKGQEYINN 92
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 344 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
R+ TF W S V E LA+ GFY L +GDK
Sbjct: 19 RIFTFGTWIYS--VNKEQLARAGFYALGEGDK 48
>pdb|1XB0|A Chain A, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|B Chain B, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|C Chain C, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|D Chain D, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|E Chain E, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|F Chain F, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|A Chain A, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|B Chain B, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|C Chain C, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|D Chain D, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|E Chain E, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|F Chain F, The Structure Of The Bir Domain Of Iap-Like Protein 2
Length = 108
Score = 87.8 bits (216), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
+P++P+++ ++R++TF TW + + LA AGF+ GQ D V+CFHC GGL W
Sbjct: 8 LPRNPSMTGYEARLITFGTWMYS--VNKEQLARAGFYAIGQEDKVQCFHCGGGLANWKPK 65
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIED 474
++PW +HA+W+P C +++ KG ++I +
Sbjct: 66 EDPWEQHAKWYPGCKYLLEEKGHEYINN 93
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ +M +RL TF +W + V+ +++A+AGF+ G + +VQCF CG ++NW +
Sbjct: 10 RNPSMTGYEARLITFGTWMYS--VNKEQLARAGFYAIGQEDKVQCFHCGGGLANWKPKED 67
Query: 193 VMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRL 231
+H PGC ++ E G+ I N + + G L
Sbjct: 68 PWEQHAKWYPGCKYLL--EEKGHEYINNIHLTRSLEGAL 104
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 229 GRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQS 288
RL TF W S V E LA+ GFY + Q DKV+C +C + W+ ++ +H +
Sbjct: 19 ARLITFGTWMYS--VNKEQLARAGFYAIGQEDKVQCFHCGGGLANWKPKEDPWEQHAKWY 76
Query: 289 PNCPFLARDNQATQANMINL-RALDA 313
P C +L + N I+L R+L+
Sbjct: 77 PGCKYLLEEKGHEYINNIHLTRSLEG 102
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M +RL TF +W + V+ +++A+AGF+ G + +VQCF CG ++NW + +
Sbjct: 14 MTGYEARLITFGTWMYS--VNKEQLARAGFYAIGQEDKVQCFHCGGGLANWKPKEDPWEQ 71
Query: 61 HRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRL 95
H PGC ++ E G+ I N + + G L
Sbjct: 72 HAKWYPGCKYLL--EEKGHEYINNIHLTRSLEGAL 104
>pdb|3SIQ|A Chain A, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|B Chain B, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|C Chain C, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|D Chain D, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|E Chain E, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|F Chain F, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
Length = 136
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 227 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
E RL TF +WP+ ++ LA+TG Y+ GDKVKC +C V IG WEQ D EH+R
Sbjct: 37 EETRLKTFTDWPLDWL-DKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQR 95
Query: 287 QSPNCPFLARDNQATQANMINLRALD 312
SPNCP L R + T IN ALD
Sbjct: 96 WSPNCPLLRR--RTTNNVPINAEALD 119
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R +N E +RL+TF WP + + +++A+ G ++T +V+CF CGV+I +W D
Sbjct: 30 RMNDLNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQ 88
Query: 193 VMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKL 226
+ +H+ P CP ++ + NV I E + ++
Sbjct: 89 PVPEHQRWSPNCPLLRR-RTTNNVPINAEALDRI 121
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
+N E +RL+TF WP + + +++A+ G ++T +V+CF CGV+I +W D + +
Sbjct: 34 LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 92
Query: 61 HRAKDPGCPFVKNPEASGNVSIENEEVYKL 90
H+ P CP ++ + NV I E + ++
Sbjct: 93 HQRWSPNCPLLRR-RTTNNVPINAEALDRI 121
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
+L+ ++R+ TFT WP D L + LA G ++ GD V+CF C + W D+P
Sbjct: 33 DLNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVP 91
Query: 452 EHARWFPECHFV 463
EH RW P C +
Sbjct: 92 EHQRWSPNCPLL 103
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 91 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK-KYFLISFRSITMNFERSRLRTFQS 149
E RL TF +WP+ ++ LA+TG Y+ GDK K F + E + Q
Sbjct: 37 EETRLKTFTDWPLDWL-DKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQR 95
Query: 150 WPSNSPVSSKR 160
W N P+ +R
Sbjct: 96 WSPNCPLLRRR 106
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 341 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
E RL TF +WP+ ++ LA+TG Y+ GDK
Sbjct: 37 EETRLKTFTDWPLDWL-DKRQLAQTGMYFTHAGDK 70
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 38/48 (79%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
CK+CMDKEV +V +PCGHLV C CA SL +CP+CR IK TVRTFLS
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTFLS 74
>pdb|3SIP|E Chain E, Crystal Structure Of Drice And Diap1-Bir1 Complex
pdb|3SIP|F Chain F, Crystal Structure Of Drice And Diap1-Bir1 Complex
Length = 115
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 227 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
E RL TF +WP+ ++ LA+TG Y+ GDKVKC +C V IG WEQ D EH+R
Sbjct: 14 EETRLKTFTDWPLDWL-DKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQR 72
Query: 287 QSPNCPFLARDNQATQANMINLRALD 312
SPNCP L R + T IN ALD
Sbjct: 73 WSPNCPLLRR--RTTNNVPINAEALD 96
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R +N E +RL+TF WP + + +++A+ G ++T +V+CF CGV+I +W D
Sbjct: 7 RMNDLNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQ 65
Query: 193 VMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKL 226
+ +H+ P CP ++ + NV I E + ++
Sbjct: 66 PVPEHQRWSPNCPLLRR-RTTNNVPINAEALDRI 98
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
+N E +RL+TF WP + + +++A+ G ++T +V+CF CGV+I +W D + +
Sbjct: 11 LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 69
Query: 61 HRAKDPGCPFVKNPEASGNVSIENEEVYKL 90
H+ P CP ++ + NV I E + ++
Sbjct: 70 HQRWSPNCPLLRR-RTTNNVPINAEALDRI 98
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
+L+ ++R+ TFT WP D L + LA G ++ GD V+CF C + W D+P
Sbjct: 10 DLNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVP 68
Query: 452 EHARWFPECHFV 463
EH RW P C +
Sbjct: 69 EHQRWSPNCPLL 80
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 91 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK-KYFLISFRSITMNFERSRLRTFQS 149
E RL TF +WP+ ++ LA+TG Y+ GDK K F + E + Q
Sbjct: 14 EETRLKTFTDWPLDWL-DKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQR 72
Query: 150 WPSNSPVSSKR 160
W N P+ +R
Sbjct: 73 WSPNCPLLRRR 83
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 341 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
E RL TF +WP+ ++ LA+TG Y+ GDK
Sbjct: 14 EETRLKTFTDWPLDWL-DKRQLAQTGMYFTHAGDK 47
>pdb|1SDZ|A Chain A, Crystal Structure Of Diap1 Bir1 Bound To A Reaper Peptide
pdb|1SE0|A Chain A, Crystal Structure Of Diap1 Bir1 Bound To A Grim Peptide
Length = 116
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 227 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
E RL TF +WP+ ++ LA+TG Y+ GDKVKC +C V IG WEQ D EH+R
Sbjct: 15 EETRLKTFTDWPLDWL-DKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQR 73
Query: 287 QSPNCPFLARDNQATQANMINLRALD 312
SPNCP L R + T IN ALD
Sbjct: 74 WSPNCPLLRR--RTTNNVPINAEALD 97
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R +N E +RL+TF WP + + +++A+ G ++T +V+CF CGV+I +W D
Sbjct: 8 RMNDLNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQ 66
Query: 193 VMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKL 226
+ +H+ P CP ++ + NV I E + ++
Sbjct: 67 PVPEHQRWSPNCPLLRR-RTTNNVPINAEALDRI 99
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
+N E +RL+TF WP + + +++A+ G ++T +V+CF CGV+I +W D + +
Sbjct: 12 LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 70
Query: 61 HRAKDPGCPFVKNPEASGNVSIENEEVYKL 90
H+ P CP ++ + NV I E + ++
Sbjct: 71 HQRWSPNCPLLRR-RTTNNVPINAEALDRI 99
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
+L+ ++R+ TFT WP D L + LA G ++ GD V+CF C + W D+P
Sbjct: 11 DLNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVP 69
Query: 452 EHARWFPECHFV 463
EH RW P C +
Sbjct: 70 EHQRWSPNCPLL 81
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 91 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK-KYFLISFRSITMNFERSRLRTFQS 149
E RL TF +WP+ ++ LA+TG Y+ GDK K F + E + Q
Sbjct: 15 EETRLKTFTDWPLDWL-DKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQR 73
Query: 150 WPSNSPVSSKR 160
W N P+ +R
Sbjct: 74 WSPNCPLLRRR 84
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 341 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
E RL TF +WP+ ++ LA+TG Y+ GDK
Sbjct: 15 EETRLKTFTDWPLDWL-DKRQLAQTGMYFTHAGDK 48
>pdb|1C9Q|A Chain A, Average Nmr Solution Structure Of The Bir-2 Domain Of Xiap
Length = 117
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
P++P + + ++R+ +F WP + L P+ LA AG +Y G GD V+CF C G L+ W D
Sbjct: 32 PRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGD 91
Query: 448 EPWSEHARWFPECHFVM 464
WSEH R FP C FV+
Sbjct: 92 RAWSEHRRHFPNCFFVL 108
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ M E +RL++FQ+WP + ++ + +A AG +YTG +VQCFACG K+ NW D
Sbjct: 33 RNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGDR 92
Query: 193 VMAKHRAKDPGCPFV 207
++HR P C FV
Sbjct: 93 AWSEHRRHFPNCFFV 107
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M E +RL++FQ+WP + ++ + +A AG +YTG +VQCFACG K+ NW D ++
Sbjct: 37 MYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGDRAWSE 96
Query: 61 HRAKDPGCPFV 71
HR P C FV
Sbjct: 97 HRRHFPNCFFV 107
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 211 EASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVI 270
+ S + N +Y E RL +F NWP +TP LA G YY GD+V+C C
Sbjct: 25 DISDTIYPRNPAMYS-EEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGK 83
Query: 271 IGRWEQGDNAESEHKRQSPNCPFLARDN 298
+ WE GD A SEH+R PNC F+ N
Sbjct: 84 LKNWEPGDRAWSEHRRHFPNCFFVLGRN 111
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 325 EASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
+ S + N +Y E RL +F NWP +TP LA G YY GD+
Sbjct: 25 DISDTIYPRNPAMYS-EEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQ 74
>pdb|1I3O|E Chain E, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
pdb|1I3O|F Chain F, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
Length = 121
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
P++P + + ++R+ +F WP + L P+ LA AG +Y G GD V+CF C G L+ W D
Sbjct: 36 PRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGD 95
Query: 448 EPWSEHARWFPECHFVM 464
WSEH R FP C FV+
Sbjct: 96 RAWSEHRRHFPNCFFVL 112
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ M E +RL++FQ+WP + ++ + +A AG +YTG +VQCFACG K+ NW D
Sbjct: 37 RNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGDR 96
Query: 193 VMAKHRAKDPGCPFV 207
++HR P C FV
Sbjct: 97 AWSEHRRHFPNCFFV 111
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M E +RL++FQ+WP + ++ + +A AG +YTG +VQCFACG K+ NW D ++
Sbjct: 41 MYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGDRAWSE 100
Query: 61 HRAKDPGCPFV 71
HR P C FV
Sbjct: 101 HRRHFPNCFFV 111
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 211 EASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVI 270
+ S + N +Y E RL +F NWP +TP LA G YY GD+V+C C
Sbjct: 29 DISDTIYPRNPAMYS-EEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGK 87
Query: 271 IGRWEQGDNAESEHKRQSPNCPFLARDN 298
+ WE GD A SEH+R PNC F+ N
Sbjct: 88 LKNWEPGDRAWSEHRRHFPNCFFVLGRN 115
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 325 EASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
+ S + N +Y E RL +F NWP +TP LA G YY GD+
Sbjct: 29 DISDTIYPRNPAMYS-EEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQ 78
>pdb|1I4O|C Chain C, Crystal Structure Of The XiapCASPASE-7 Complex
pdb|1I4O|D Chain D, Crystal Structure Of The XiapCASPASE-7 Complex
Length = 141
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
P++P + + ++R+ +F WP + L P+ LA AG +Y G GD V+CF C G L+ W D
Sbjct: 36 PRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCD 95
Query: 448 EPWSEHARWFPECHFVM 464
WSEH R FP C FV+
Sbjct: 96 RAWSEHRRHFPNCFFVL 112
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ M E +RL++FQ+WP + ++ + +A AG +YTG +VQCF CG K+ NW D
Sbjct: 37 RNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCDR 96
Query: 193 VMAKHRAKDPGCPFV 207
++HR P C FV
Sbjct: 97 AWSEHRRHFPNCFFV 111
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M E +RL++FQ+WP + ++ + +A AG +YTG +VQCF CG K+ NW D ++
Sbjct: 41 MYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCDRAWSE 100
Query: 61 HRAKDPGCPFV 71
HR P C FV
Sbjct: 101 HRRHFPNCFFV 111
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 211 EASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVI 270
+ S + N +Y E RL +F NWP +TP LA G YY GD+V+C C
Sbjct: 29 DISDTIYPRNPAMYS-EEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGK 87
Query: 271 IGRWEQGDNAESEHKRQSPNCPFL 294
+ WE D A SEH+R PNC F+
Sbjct: 88 LKNWEPCDRAWSEHRRHFPNCFFV 111
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 325 EASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
+ S + N +Y E RL +F NWP +TP LA G YY GD+
Sbjct: 29 DISDTIYPRNPAMYS-EEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQ 78
>pdb|1KMC|C Chain C, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
pdb|1KMC|D Chain D, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
Length = 119
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
P++P + ++R+ +F WP + L P+ LA AG +Y G GD V+CF C G L+ W D
Sbjct: 32 PRNPAMYCEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCD 91
Query: 448 EPWSEHARWFPECHFVM 464
WSEH R FP C FV+
Sbjct: 92 RAWSEHRRHFPNCFFVL 108
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ M E +RL++FQ+WP + ++ + +A AG +YTG +VQCF CG K+ NW D
Sbjct: 33 RNPAMYCEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCDR 92
Query: 193 VMAKHRAKDPGCPFV 207
++HR P C FV
Sbjct: 93 AWSEHRRHFPNCFFV 107
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M E +RL++FQ+WP + ++ + +A AG +YTG +VQCF CG K+ NW D ++
Sbjct: 37 MYCEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCDRAWSE 96
Query: 61 HRAKDPGCPFV 71
HR P C FV
Sbjct: 97 HRRHFPNCFFV 107
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 211 EASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVI 270
+ S + N +Y E RL +F NWP +TP LA G YY GD+V+C C
Sbjct: 25 DISDTIYPRNPAMY-CEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGK 83
Query: 271 IGRWEQGDNAESEHKRQSPNCPFLARDN 298
+ WE D A SEH+R PNC F+ N
Sbjct: 84 LKNWEPCDRAWSEHRRHFPNCFFVLGRN 111
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 325 EASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
+ S + N +Y E RL +F NWP +TP LA G YY GD+
Sbjct: 25 DISDTIYPRNPAMY-CEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQ 74
>pdb|1I51|E Chain E, Crystal Structure Of Caspase-7 Complexed With Xiap
pdb|1I51|F Chain F, Crystal Structure Of Caspase-7 Complexed With Xiap
Length = 117
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
P++P + ++R+ +F WP + L P+ LA AG +Y G GD V+CF C G L+ W D
Sbjct: 32 PRNPAMYCEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCD 91
Query: 448 EPWSEHARWFPECHFVM 464
WSEH R FP C FV+
Sbjct: 92 RAWSEHRRHFPNCFFVL 108
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 133 RSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDS 192
R+ M E +RL++FQ+WP + ++ + +A AG +YTG +VQCF CG K+ NW D
Sbjct: 33 RNPAMYCEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCDR 92
Query: 193 VMAKHRAKDPGCPFV 207
++HR P C FV
Sbjct: 93 AWSEHRRHFPNCFFV 107
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M E +RL++FQ+WP + ++ + +A AG +YTG +VQCF CG K+ NW D ++
Sbjct: 37 MYCEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCDRAWSE 96
Query: 61 HRAKDPGCPFV 71
HR P C FV
Sbjct: 97 HRRHFPNCFFV 107
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 211 EASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVI 270
+ S + N +Y E RL +F NWP +TP LA G YY GD+V+C C
Sbjct: 25 DISDTIYPRNPAMY-CEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGK 83
Query: 271 IGRWEQGDNAESEHKRQSPNCPFLARDN 298
+ WE D A SEH+R PNC F+ N
Sbjct: 84 LKNWEPCDRAWSEHRRHFPNCFFVLGRN 111
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 325 EASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
+ S + N +Y E RL +F NWP +TP LA G YY GD+
Sbjct: 25 DISDTIYPRNPAMY-CEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQ 74
>pdb|2QRA|D Chain D, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
pdb|2QRA|C Chain C, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
pdb|2QRA|B Chain B, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
pdb|2QRA|A Chain A, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
Length = 111
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 4 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
E +RL+TF ++PS SPVS+ +A+AGF YTG V+CF+C + W Y DS + +HR
Sbjct: 38 EFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRK 97
Query: 64 KDPGCPFV 71
P C F+
Sbjct: 98 VSPNCRFI 105
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 140 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 199
E +RL+TF ++PS SPVS+ +A+AGF YTG V+CF+C + W Y DS + +HR
Sbjct: 38 EFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRK 97
Query: 200 KDPGCPFV 207
P C F+
Sbjct: 98 VSPNCRFI 105
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 218 IENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQG 277
I EE + E RL TF N+P V+ LA+ GF Y +GD V+C C + RW+ G
Sbjct: 29 INKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYG 88
Query: 278 DNAESEHKRQSPNCPFL 294
D+A H++ SPNC F+
Sbjct: 89 DSAVGRHRKVSPNCRFI 105
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 398 SRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWF 457
+R+ TF +P SP+ +LA AGF Y G+GD VRCF C + +W D H +
Sbjct: 40 NRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVS 99
Query: 458 PECHFV 463
P C F+
Sbjct: 100 PNCRFI 105
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 332 IENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGD 374
I EE + E RL TF N+P V+ LA+ GF Y +GD
Sbjct: 29 INKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGD 71
>pdb|2POI|A Chain A, Crystal Structure Of Xiap Bir1 Domain (I222 Form)
Length = 94
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 4 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
E +RL+TF ++PS SPVS+ +A+AGF YTG V+CF+C + W Y DS + +HR
Sbjct: 21 EFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRK 80
Query: 64 KDPGCPFV 71
P C F+
Sbjct: 81 VSPNCRFI 88
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 140 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 199
E +RL+TF ++PS SPVS+ +A+AGF YTG V+CF+C + W Y DS + +HR
Sbjct: 21 EFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRK 80
Query: 200 KDPGCPFV 207
P C F+
Sbjct: 81 VSPNCRFI 88
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 218 IENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQG 277
I EE + E RL TF N+P V+ LA+ GF Y +GD V+C C + RW+ G
Sbjct: 12 INKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYG 71
Query: 278 DNAESEHKRQSPNCPFL 294
D+A H++ SPNC F+
Sbjct: 72 DSAVGRHRKVSPNCRFI 88
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 398 SRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWF 457
+R+ TF +P SP+ +LA AGF Y G+GD VRCF C + +W D H +
Sbjct: 23 NRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVS 82
Query: 458 PECHFV 463
P C F+
Sbjct: 83 PNCRFI 88
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 332 IENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGD 374
I EE + E RL TF N+P V+ LA+ GF Y +GD
Sbjct: 12 INKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGD 54
>pdb|2POP|B Chain B, The Crystal Structure Of Tab1 And Bir1 Complex
pdb|2POP|D Chain D, The Crystal Structure Of Tab1 And Bir1 Complex
Length = 95
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 4 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
E +RL+TF ++PS SPVS+ +A+AGF YTG V+CF+C + W Y DS + +HR
Sbjct: 21 EFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRK 80
Query: 64 KDPGCPFV 71
P C F+
Sbjct: 81 VSPNCRFI 88
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 140 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 199
E +RL+TF ++PS SPVS+ +A+AGF YTG V+CF+C + W Y DS + +HR
Sbjct: 21 EFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRK 80
Query: 200 KDPGCPFV 207
P C F+
Sbjct: 81 VSPNCRFI 88
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 218 IENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQG 277
I EE + E RL TF N+P V+ LA+ GF Y +GD V+C C + RW+ G
Sbjct: 12 INKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYG 71
Query: 278 DNAESEHKRQSPNCPFL 294
D+A H++ SPNC F+
Sbjct: 72 DSAVGRHRKVSPNCRFI 88
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 398 SRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWF 457
+R+ TF +P SP+ +LA AGF Y G+GD VRCF C + +W D H +
Sbjct: 23 NRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVS 82
Query: 458 PECHFV 463
P C F+
Sbjct: 83 PNCRFI 88
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 332 IENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGD 374
I EE + E RL TF N+P V+ LA+ GF Y +GD
Sbjct: 12 INKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGD 54
>pdb|3M1D|A Chain A, Structure Of Bir1 From Ciap1
pdb|3M1D|B Chain B, Structure Of Bir1 From Ciap1
Length = 85
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 4 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 63
E R+ T+ ++P+ PVS + +A+AGF+YTG +V+CF CG+ + NW DS + KH+
Sbjct: 12 ELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQ 71
Query: 64 KDPGCPFVKN 73
P C F++N
Sbjct: 72 LYPSCSFIQN 81
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%)
Query: 140 ERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHRA 199
E R+ T+ ++P+ PVS + +A+AGF+YTG +V+CF CG+ + NW DS + KH+
Sbjct: 12 ELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQ 71
Query: 200 KDPGCPFVKN 209
P C F++N
Sbjct: 72 LYPSCSFIQN 81
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 399 RVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFP 458
R+ T++T+P P+ +SLA AGF+Y G D V+CF C L W D P +H + +P
Sbjct: 15 RMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQLYP 74
Query: 459 ECHFV 463
C F+
Sbjct: 75 SCSFI 79
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
+ E R++T++ +P V+ +LA+ GFYY DKVKC C +++ W+ GD+ +
Sbjct: 9 FSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQK 68
Query: 284 HKRQSPNCPFL 294
HK+ P+C F+
Sbjct: 69 HKQLYPSCSFI 79
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
+ E R++T++ +P V+ +LA+ GFYY DK
Sbjct: 9 FSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDK 46
>pdb|3M0A|D Chain D, Crystal Structure Of Traf2:ciap2 Complex
pdb|3M0D|D Chain D, Crystal Structure Of The Traf1:traf2:ciap2 Complex
Length = 75
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
++ E R+ T+ ++P+ PVS + +A+AGF+YTG +V+CF CG+ + NW DS K
Sbjct: 2 LSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKRGDSPTEK 61
Query: 61 HRAKDPGCPFVKN 73
H+ P C FV++
Sbjct: 62 HKKLYPSCRFVQS 74
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
++ E R+ T+ ++P+ PVS + +A+AGF+YTG +V+CF CG+ + NW DS K
Sbjct: 2 LSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKRGDSPTEK 61
Query: 197 HRAKDPGCPFVKN 209
H+ P C FV++
Sbjct: 62 HKKLYPSCRFVQS 74
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 227 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
E R++T++ +P V+ +LA+ GFYY DKVKC C +++ W++GD+ +HK+
Sbjct: 5 ELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKRGDSPTEKHKK 64
Query: 287 QSPNCPFL 294
P+C F+
Sbjct: 65 LYPSCRFV 72
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 399 RVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFP 458
R+ T++T+P P+ +SLA AGF+Y G D V+CF C L W D P +H + +P
Sbjct: 8 RMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKRGDSPTEKHKKLYP 67
Query: 459 ECHFV 463
C FV
Sbjct: 68 SCRFV 72
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 341 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
E R++T++ +P V+ +LA+ GFYY DK
Sbjct: 5 ELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDK 39
>pdb|2VM5|A Chain A, Human Bir2 Domain Of Baculoviral Inhibitor Of Apoptosis
Repeat-Containing 1 (Birc1)
Length = 106
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 397 DSRVLTFTTWP-RDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHAR 455
++R+ +F WP + P L+ AGF + G+ D V+CF C G L W D+PW EHA+
Sbjct: 22 EARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWKEHAK 81
Query: 456 WFPECHFVMLVKGEQFIEDTIKA 478
WFP+C F+ K + I I++
Sbjct: 82 WFPKCEFLRSKKSSEEITQYIQS 104
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 224 YKLESGRLATFNNWPVSFI-VTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAES 282
Y+ E RLA+F NWP ++P L++ GF + + D V+C C +G WE+GD+
Sbjct: 18 YQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWK 77
Query: 283 EHKRQSPNCPFL 294
EH + P C FL
Sbjct: 78 EHAKWFPKCEFL 89
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 4 ERSRLRTFQSWP-SNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHR 62
E +RL +F++WP +S +++AGF +TG Q VQCF+CG + NW D +H
Sbjct: 21 EEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWKEHA 80
Query: 63 AKDPGCPFVKNPEASGNVS 81
P C F+++ ++S ++
Sbjct: 81 KWFPKCEFLRSKKSSEEIT 99
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 140 ERSRLRTFQSWP-SNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAKHR 198
E +RL +F++WP +S +++AGF +TG Q VQCF+CG + NW D +H
Sbjct: 21 EEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWKEHA 80
Query: 199 AKDPGCPFVKNPEASGNVS 217
P C F+++ ++S ++
Sbjct: 81 KWFPKCEFLRSKKSSEEIT 99
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 338 YKLESGRLATFNNWPVSFI-VTPEALAKTGFYYLKQGD 374
Y+ E RLA+F NWP ++P L++ GF + + D
Sbjct: 18 YQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQD 55
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
CK+C+D+ V +V +PCGHLV C CA L CP+CR +++ VRTFLS
Sbjct: 16 CKVCLDRAVSIVFVPCGHLV-CAECAPGLQLCPICRAPVRSRVRTFLS 62
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
CKICMD+ + +V +PCGHLVTC CA ++ +CP+C I + F+S
Sbjct: 28 CKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
CKICMD+ + +V +PCGHLVTC CA ++ +CP+C I + F+S
Sbjct: 27 CKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 74
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
CKICMD+ + +V +PCGHLVTC CA ++ +CP+C I + +S
Sbjct: 27 CKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74
>pdb|1M4M|A Chain A, Mouse Survivin
Length = 140
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
L++ R+ATF NWP TPE +A+ GF + + D +C +C + WE DN
Sbjct: 14 LKNYRIATFKNWPFLEDCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDNP 73
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
EH++ SP C FL Q + + LD
Sbjct: 74 IEEHRKHSPGCAFLTVKKQMEELTVSEFLKLD 105
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 7 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 61
R+ TF++WP + + +R+A+AGF + ++E QCF C ++ W +D+ + +H
Sbjct: 18 RIATFKNWPFLEDCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDNPIEEH 77
Query: 62 RAKDPGCPFVKNPEASGNVSIENEEVYKLESGR 94
R PGC F+ + +++ E KL+ R
Sbjct: 78 RKHSPGCAFLTVKKQMEELTV--SEFLKLDRQR 108
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 143 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 197
R+ TF++WP + + +R+A+AGF + ++E QCF C ++ W +D+ + +H
Sbjct: 18 RIATFKNWPFLEDCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDNPIEEH 77
Query: 198 RAKDPGCPFVKNPEASGNVSIENEEVYKLESGR 230
R PGC F+ + +++ E KL+ R
Sbjct: 78 RKHSPGCAFLTVKKQMEELTV--SEFLKLDRQR 108
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 387 VPKHPNLSTLDSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLR 441
+P+ L + R+ TF WP D P+ +A AGF + + + D +CF C L
Sbjct: 6 LPQIWQLYLKNYRIATFKNWPFLEDCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELE 65
Query: 442 KWTAMDEPWSEHARWFPECHFVMLVK 467
W D P EH + P C F+ + K
Sbjct: 66 GWEPDDNPIEEHRKHSPGCAFLTVKK 91
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 340 LESGRLATFNNWPV--SFIVTPEALAKTGFYY 369
L++ R+ATF NWP TPE +A+ GF +
Sbjct: 14 LKNYRIATFKNWPFLEDCACTPERMAEAGFIH 45
>pdb|3UEE|A Chain A, Crystal Structure Of Human Survivin K62a Mutant Bound To
N-Terminal Histone H3
pdb|3UEE|C Chain C, Crystal Structure Of Human Survivin K62a Mutant Bound To
N-Terminal Histone H3
pdb|3UEG|A Chain A, Crystal Structure Of Human Survivin K62a Mutant
pdb|3UEG|B Chain B, Crystal Structure Of Human Survivin K62a Mutant
Length = 146
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
L+ R++TF NWP TPE +A+ GF + + D +C +C + WE D+
Sbjct: 18 LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFAELEGWEPDDDP 77
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
EHK+ S C FL+ Q + + LD
Sbjct: 78 IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 109
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 7 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 61
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 22 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFAELEGWEPDDDPIEEH 81
Query: 62 RAKDPGCPFV 71
+ GC F+
Sbjct: 82 KKHSSGCAFL 91
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 143 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 197
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 22 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFAELEGWEPDDDPIEEH 81
Query: 198 RAKDPGCPFV 207
+ GC F+
Sbjct: 82 KKHSSGCAFL 91
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
D R+ TF WP P+ +A AGF + + + D +CF C L W D+P
Sbjct: 20 DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFAELEGWEPDDDPIE 79
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
EH + C F+ + K QF E T+
Sbjct: 80 EHKKHSSGCAFLSVKK--QFEELTL 102
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 340 LESGRLATFNNWPV--SFIVTPEALAKTGFYY 369
L+ R++TF NWP TPE +A+ GF +
Sbjct: 18 LKDHRISTFKNWPFLEGCACTPERMAEAGFIH 49
>pdb|1XOX|A Chain A, Solution Structure Of Human Survivin
pdb|1XOX|B Chain B, Solution Structure Of Human Survivin
Length = 117
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
L+ R++TF NWP TPE +A+ GF + + D +C +C + WE D+
Sbjct: 14 LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 73
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
EHK+ S C FL+ Q + + LD
Sbjct: 74 IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 105
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 7 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 61
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 18 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEH 77
Query: 62 RAKDPGCPFV 71
+ GC F+
Sbjct: 78 KKHSSGCAFL 87
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 143 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 197
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 18 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEH 77
Query: 198 RAKDPGCPFV 207
+ GC F+
Sbjct: 78 KKHSSGCAFL 87
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
D R+ TF WP P+ +A AGF + + + D +CF C L W D+P
Sbjct: 16 DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIE 75
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
EH + C F+ + K QF E T+
Sbjct: 76 EHKKHSSGCAFLSVKK--QFEELTL 98
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 340 LESGRLATFNNWPV--SFIVTPEALAKTGFYY 369
L+ R++TF NWP TPE +A+ GF +
Sbjct: 14 LKDHRISTFKNWPFLEGCACTPERMAEAGFIH 45
>pdb|3UEI|A Chain A, Crystal Structure Of Human Survivin E65a Mutant
pdb|3UEI|B Chain B, Crystal Structure Of Human Survivin E65a Mutant
Length = 146
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
L+ R++TF NWP TPE +A+ GF + + D +C +C + WE D+
Sbjct: 18 LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELAGWEPDDDP 77
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
EHK+ S C FL+ Q + + LD
Sbjct: 78 IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 109
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 7 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 61
R+ TF++WP + +R+A+AGF + ++E QCF C +++ W +D + +H
Sbjct: 22 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELAGWEPDDDPIEEH 81
Query: 62 RAKDPGCPFV 71
+ GC F+
Sbjct: 82 KKHSSGCAFL 91
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 143 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 197
R+ TF++WP + +R+A+AGF + ++E QCF C +++ W +D + +H
Sbjct: 22 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELAGWEPDDDPIEEH 81
Query: 198 RAKDPGCPFV 207
+ GC F+
Sbjct: 82 KKHSSGCAFL 91
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
D R+ TF WP P+ +A AGF + + + D +CF C L W D+P
Sbjct: 20 DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELAGWEPDDDPIE 79
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
EH + C F+ + K QF E T+
Sbjct: 80 EHKKHSSGCAFLSVKK--QFEELTL 102
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 340 LESGRLATFNNWPV--SFIVTPEALAKTGFYY 369
L+ R++TF NWP TPE +A+ GF +
Sbjct: 18 LKDHRISTFKNWPFLEGCACTPERMAEAGFIH 49
>pdb|2RAX|A Chain A, Crystal Structure Of Borealin (20-78) Bound To Survivin
(1-120)
pdb|2RAX|E Chain E, Crystal Structure Of Borealin (20-78) Bound To Survivin
(1-120)
pdb|2RAX|X Chain X, Crystal Structure Of Borealin (20-78) Bound To Survivin
(1-120)
Length = 123
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
L+ R++TF NWP TPE +A+ GF + + D +C +C + WE D+
Sbjct: 17 LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 76
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
EHK+ S C FL+ Q + + LD
Sbjct: 77 IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 108
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 7 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 61
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 21 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEH 80
Query: 62 RAKDPGCPFV 71
+ GC F+
Sbjct: 81 KKHSSGCAFL 90
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 143 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 197
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 21 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEH 80
Query: 198 RAKDPGCPFV 207
+ GC F+
Sbjct: 81 KKHSSGCAFL 90
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
D R+ TF WP P+ +A AGF + + + D +CF C L W D+P
Sbjct: 19 DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIE 78
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
EH + C F+ + K QF E T+
Sbjct: 79 EHKKHSSGCAFLSVKK--QFEELTL 101
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 340 LESGRLATFNNWPV--SFIVTPEALAKTGFYY 369
L+ R++TF NWP TPE +A+ GF +
Sbjct: 17 LKDHRISTFKNWPFLEGCACTPERMAEAGFIH 48
>pdb|1F3H|A Chain A, X-Ray Crystal Structure Of The Human Anti-Apoptotic
Protein Survivin
pdb|1F3H|B Chain B, X-Ray Crystal Structure Of The Human Anti-Apoptotic
Protein Survivin
Length = 142
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
L+ R++TF NWP TPE +A+ GF + + D +C +C + WE D+
Sbjct: 14 LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDMAQCFFCFKELEGWEPDDDP 73
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
EHK+ S C FL+ Q + + LD
Sbjct: 74 IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 105
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 7 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 61
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 18 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDMAQCFFCFKELEGWEPDDDPIEEH 77
Query: 62 RAKDPGCPFV 71
+ GC F+
Sbjct: 78 KKHSSGCAFL 87
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 143 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 197
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 18 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDMAQCFFCFKELEGWEPDDDPIEEH 77
Query: 198 RAKDPGCPFV 207
+ GC F+
Sbjct: 78 KKHSSGCAFL 87
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
D R+ TF WP P+ +A AGF + + + D +CF C L W D+P
Sbjct: 16 DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDMAQCFFCFKELEGWEPDDDPIE 75
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
EH + C F+ + K QF E T+
Sbjct: 76 EHKKHSSGCAFLSVKK--QFEELTL 98
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 340 LESGRLATFNNWPV--SFIVTPEALAKTGFYY 369
L+ R++TF NWP TPE +A+ GF +
Sbjct: 14 LKDHRISTFKNWPFLEGCACTPERMAEAGFIH 45
>pdb|2RAW|A Chain A, Crystal Structure Of The Borealin-survivin Complex
Length = 145
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
L+ R++TF NWP TPE +A+ GF + + D +C +C + WE D+
Sbjct: 17 LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 76
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
EHK+ S C FL+ Q + + LD
Sbjct: 77 IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 108
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
D R+ TF WP P+ +A AGF + + + D +CF C L W D+P
Sbjct: 19 DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIE 78
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
EH + C F+ + K QF E T+
Sbjct: 79 EHKKHSSGCAFLSVKK--QFEELTL 101
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 7 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 61
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 21 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEH 80
Query: 62 RAKDPGCPFV 71
+ GC F+
Sbjct: 81 KKHSSGCAFL 90
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 143 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 197
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 21 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEH 80
Query: 198 RAKDPGCPFV 207
+ GC F+
Sbjct: 81 KKHSSGCAFL 90
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 340 LESGRLATFNNWPV--SFIVTPEALAKTGFYY 369
L+ R++TF NWP TPE +A+ GF +
Sbjct: 17 LKDHRISTFKNWPFLEGCACTPERMAEAGFIH 48
>pdb|3UEC|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3
Phosphorylated On Threonine-3.
pdb|3UED|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3
Phosphorylated On Threonine-3 (C2 Space Group).
pdb|3UED|C Chain C, Crystal Structure Of Human Survivin Bound To Histone H3
Phosphorylated On Threonine-3 (C2 Space Group).
pdb|3UEF|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3
(C2 Space Group).
pdb|3UEF|C Chain C, Crystal Structure Of Human Survivin Bound To Histone H3
(C2 Space Group)
Length = 146
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
L+ R++TF NWP TPE +A+ GF + + D +C +C + WE D+
Sbjct: 18 LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 77
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
EHK+ S C FL+ Q + + LD
Sbjct: 78 IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 109
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 7 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 61
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 22 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEH 81
Query: 62 RAKDPGCPFV 71
+ GC F+
Sbjct: 82 KKHSSGCAFL 91
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 143 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 197
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 22 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEH 81
Query: 198 RAKDPGCPFV 207
+ GC F+
Sbjct: 82 KKHSSGCAFL 91
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
D R+ TF WP P+ +A AGF + + + D +CF C L W D+P
Sbjct: 20 DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIE 79
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
EH + C F+ + K QF E T+
Sbjct: 80 EHKKHSSGCAFLSVKK--QFEELTL 102
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 340 LESGRLATFNNWPV--SFIVTPEALAKTGFYY 369
L+ R++TF NWP TPE +A+ GF +
Sbjct: 18 LKDHRISTFKNWPFLEGCACTPERMAEAGFIH 49
>pdb|3UIG|A Chain A, Crystal Structure Of Human Survivin In Complex With T3
Phosphorylated H3(1-15) Peptide
pdb|3UIG|B Chain B, Crystal Structure Of Human Survivin In Complex With T3
Phosphorylated H3(1-15) Peptide
pdb|3UIH|A Chain A, Crystal Structure Of Human Survivin In Complex With
SmacDIABLO(1-15) Peptide
pdb|3UIH|B Chain B, Crystal Structure Of Human Survivin In Complex With
SmacDIABLO(1-15) Peptide
pdb|3UII|A Chain A, Crystal Structure Of Human Survivin In Complex With
H3(1-10) Peptide
pdb|3UII|B Chain B, Crystal Structure Of Human Survivin In Complex With
H3(1-10) Peptide
Length = 143
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
L+ R++TF NWP TPE +A+ GF + + D +C +C + WE D+
Sbjct: 15 LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 74
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
EHK+ S C FL+ Q + + LD
Sbjct: 75 IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 106
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 7 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 61
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 19 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEH 78
Query: 62 RAKDPGCPFV 71
+ GC F+
Sbjct: 79 KKHSSGCAFL 88
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 143 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 197
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 19 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEH 78
Query: 198 RAKDPGCPFV 207
+ GC F+
Sbjct: 79 KKHSSGCAFL 88
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
D R+ TF WP P+ +A AGF + + + D +CF C L W D+P
Sbjct: 17 DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIE 76
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
EH + C F+ + K QF E T+
Sbjct: 77 EHKKHSSGCAFLSVKK--QFEELTL 99
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 340 LESGRLATFNNWPV--SFIVTPEALAKTGFYY 369
L+ R++TF NWP TPE +A+ GF +
Sbjct: 15 LKDHRISTFKNWPFLEGCACTPERMAEAGFIH 46
>pdb|1E31|A Chain A, Survivin Dimer H. Sapiens
pdb|1E31|B Chain B, Survivin Dimer H. Sapiens
pdb|2QFA|A Chain A, Crystal Structure Of A Survivin-Borealin-Incenp Core
Complex
pdb|4A0I|A Chain A, Crystal Structure Of Survivin Bound To The N-Terminal Tail
Of Hsgo1
pdb|4A0I|B Chain B, Crystal Structure Of Survivin Bound To The N-Terminal Tail
Of Hsgo1
pdb|4A0J|A Chain A, Crystal Structure Of Survivin Bound To The Phosphorylated
N- Terminal Tail Of Histone H3
pdb|4A0J|B Chain B, Crystal Structure Of Survivin Bound To The Phosphorylated
N- Terminal Tail Of Histone H3
pdb|4A0N|A Chain A, Crystal Structure Of Survivin Bound To The Phosphorylated
N- Terminal Tail Of Histone H3
Length = 142
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
L+ R++TF NWP TPE +A+ GF + + D +C +C + WE D+
Sbjct: 14 LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 73
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
EHK+ S C FL+ Q + + LD
Sbjct: 74 IEEHKKHSSGCAFLSVKKQFEELTLGEFLKLD 105
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 7 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 61
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 18 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEH 77
Query: 62 RAKDPGCPFV 71
+ GC F+
Sbjct: 78 KKHSSGCAFL 87
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 143 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 197
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 18 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEH 77
Query: 198 RAKDPGCPFV 207
+ GC F+
Sbjct: 78 KKHSSGCAFL 87
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
D R+ TF WP P+ +A AGF + + + D +CF C L W D+P
Sbjct: 16 DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIE 75
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
EH + C F+ + K QF E T+
Sbjct: 76 EHKKHSSGCAFLSVKK--QFEELTL 98
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 340 LESGRLATFNNWPV--SFIVTPEALAKTGFYY 369
L+ R++TF NWP TPE +A+ GF +
Sbjct: 14 LKDHRISTFKNWPFLEGCACTPERMAEAGFIH 45
>pdb|3UEH|A Chain A, Crystal Structure Of Human Survivin H80a Mutant
pdb|3UEH|B Chain B, Crystal Structure Of Human Survivin H80a Mutant
Length = 146
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
L+ R++TF NWP TPE +A+ GF + + D +C +C + WE D+
Sbjct: 18 LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDP 77
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
EHK+ S C FL+ Q + + LD
Sbjct: 78 IEEHKKASSGCAFLSVKKQFEELTLGEFLKLD 109
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 7 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 61
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 22 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEH 81
Query: 62 RAKDPGCPFV 71
+ GC F+
Sbjct: 82 KKASSGCAFL 91
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 143 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 197
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 22 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEH 81
Query: 198 RAKDPGCPFV 207
+ GC F+
Sbjct: 82 KKASSGCAFL 91
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
D R+ TF WP P+ +A AGF + + + D +CF C L W D+P
Sbjct: 20 DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIE 79
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
EH + C F+ + K QF E T+
Sbjct: 80 EHKKASSGCAFLSVKK--QFEELTL 102
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 340 LESGRLATFNNWPV--SFIVTPEALAKTGFYY 369
L+ R++TF NWP TPE +A+ GF +
Sbjct: 18 LKDHRISTFKNWPFLEGCACTPERMAEAGFIH 49
>pdb|3UIJ|A Chain A, Crystal Structure Of Human Survivin K62yH80W MUTANT IN
COMPLEX WITH SmacDIABLO(1-15) Peptide
pdb|3UIJ|B Chain B, Crystal Structure Of Human Survivin K62yH80W MUTANT IN
COMPLEX WITH SmacDIABLO(1-15) Peptide
pdb|3UIK|A Chain A, Crystal Structure Of Human Survivin Mutant K62yH80W IN
COMPLEX WITH H3(1-10) Peptide
pdb|3UIK|B Chain B, Crystal Structure Of Human Survivin Mutant K62yH80W IN
COMPLEX WITH H3(1-10) Peptide
Length = 143
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 226 LESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGDNA 280
L+ R++TF NWP TPE +A+ GF + + D +C +C + WE D+
Sbjct: 15 LKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFYELEGWEPDDDP 74
Query: 281 ESEHKRQSPNCPFLARDNQATQANMINLRALD 312
EHK+ S C FL+ Q + + LD
Sbjct: 75 IEEHKKWSSGCAFLSVKKQFEELTLGEFLKLD 106
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 397 DSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRKWTAMDEPWS 451
D R+ TF WP P+ +A AGF + + + D +CF C L W D+P
Sbjct: 17 DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFYELEGWEPDDDPIE 76
Query: 452 EHARWFPECHFVMLVKGEQFIEDTI 476
EH +W C F+ + K QF E T+
Sbjct: 77 EHKKWSSGCAFLSVKK--QFEELTL 99
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 7 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 61
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 19 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFYELEGWEPDDDPIEEH 78
Query: 62 RAKDPGCPFV 71
+ GC F+
Sbjct: 79 KKWSSGCAFL 88
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 143 RLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYNDSVMAKH 197
R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D + +H
Sbjct: 19 RISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFYELEGWEPDDDPIEEH 78
Query: 198 RAKDPGCPFV 207
+ GC F+
Sbjct: 79 KKWSSGCAFL 88
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFL 556
C +C ++E+ PCGH V C CA+ L CPVCR ++ +L
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYL 67
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPR-----CPVCRENIKAT 551
CKIC + + V + PCGHL+ C C +S CP CR IK T
Sbjct: 27 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGT 72
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPR-----CPVCRENIKAT 551
CKIC + + V + PCGHL+ C C +S CP CR IK T
Sbjct: 30 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGT 75
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPR-----CPVCRENIKAT 551
CKIC + + V + PCGHL+ C C +S CP CR IK T
Sbjct: 337 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGT 382
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPR-----CPVCRENIKAT 551
CKIC + + V + PCGHL+ C C +S CP CR IK T
Sbjct: 337 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGT 382
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPR-----CPVCRENIKAT 551
CKIC + + V + PCGHL+ C C +S CP CR IK T
Sbjct: 335 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGT 380
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPR-----CPVCRENIKAT 551
CKIC + + V + PCGHL+ C C +S CP CR IK T
Sbjct: 335 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGT 380
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPR-----CPVCRENIKAT 551
CKIC + + V + PCGHL+ C C ++ CP CR IK T
Sbjct: 29 CKICAENDKDVKIEPCGHLM-CTSCLTAWQESDGQGCPFCRCEIKGT 74
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPR-----CPVCRENIKAT 551
CKIC + + V + PCGHL+ C C ++ CP CR IK T
Sbjct: 341 CKICAENDKDVKIEPCGHLM-CTSCLTAWQESDGQGCPFCRCEIKGT 386
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 63
Score = 36.6 bits (83), Expect = 0.034, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 526 GHLVTCVLCASSLPR----CPVCRENIKATVRTFLS 557
GHLVTC CA L + CP+C++ I+ ++ F++
Sbjct: 28 GHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKAT 551
C +C + V VLLPC H C C +CP+CR+ ++ +
Sbjct: 18 CVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQES 59
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 510 CKICMD--KEVGVVLLPCGHLVTCVLCASSLPR----CPVCRENIKATVRTFL 556
C IC K +V GHL+ C CA L + CPVCR+ I+ V T+
Sbjct: 10 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF 62
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 510 CKICMD--KEVGVVLLPCGHLVTCVLCASSLPR----CPVCRENIKATVRTFL 556
C IC K +V GHL+ C CA L + CPVCR+ I+ V T+
Sbjct: 11 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF 63
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPR----CPVCRENIKATVRTFL 556
C IC + + V L C H C C + + CP+CR++IK+ + +
Sbjct: 56 CIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKTYSLV 105
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPR----CPVCRENIKATVRTFL 556
C IC + + V L C H C C + + CP+CR++IK+ + +
Sbjct: 56 CIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKTYSLV 105
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSLPR----CPVCRENIKATVRTFL 556
C IC + + V L C H C C + + CP+CR++IK+ + +
Sbjct: 67 CIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKTYSLV 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,686,235
Number of Sequences: 62578
Number of extensions: 769019
Number of successful extensions: 1750
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1362
Number of HSP's gapped (non-prelim): 337
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)