RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2747
(557 letters)
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 169 bits (427), Expect = 8e-48
Identities = 91/343 (26%), Positives = 127/343 (37%), Gaps = 9/343 (2%)
Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
+ + R+ TF WP S V PE LA GFYY+ + D VKC C + WE GD+ E
Sbjct: 3 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVE 62
Query: 284 HKRQSPNCPFLAR---DNQATQANMINLRALDAKDPGCPFVKNPEASGNVSIENEEVYKL 340
H + P C FL R + L+ P + + +
Sbjct: 63 HAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLSTPPIIHYGPGESSSEDAVMMNTPV 122
Query: 341 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGV--QNHRVPKHPNLSTLDS 398
L N + + TG Y D L + K + S
Sbjct: 123 VKSALEMGFNRDLVKQTVQSKILTTGENYKTVNDIVSALLNAEDEKREEEKEKQAEEMAS 182
Query: 399 RVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEH----A 454
L+ R + + + + + + D +K +
Sbjct: 183 DDLSLIRKNRMALFQQLTCVLPILDNLLKANVINKQEHDIIKQKTQIPLQARELIDTILV 242
Query: 455 RWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTPKFFVKSLEEEVRRLREARLCKICM 514
+ + E + T SLEE++RRL+E R CK+CM
Sbjct: 243 KGNAAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCM 302
Query: 515 DKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
DKEV VV +PCGHLV C CA SL +CP+CR IK TVRTFLS
Sbjct: 303 DKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345
Score = 117 bits (293), Expect = 3e-29
Identities = 43/99 (43%), Positives = 67/99 (67%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
++ T +R+ TF WP P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D+PW
Sbjct: 2 SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWV 61
Query: 452 EHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTP 490
EHA+WFP C F++ +KG++F+++ P + +++ TP
Sbjct: 62 EHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLSTP 100
Score = 91.6 bits (225), Expect = 3e-20
Identities = 44/318 (13%), Positives = 82/318 (25%), Gaps = 22/318 (6%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M +R+RTF WPS+ PV +++A AGF+Y G +V+CF+C + W D +
Sbjct: 3 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVE 62
Query: 61 HRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYL 120
H P C F+ + V L L+T +
Sbjct: 63 HAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLSTPPIIHYGPGESSS---------- 112
Query: 121 KQGDKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFAC 180
+ +S L + +I G Y V
Sbjct: 113 ---------EDAVMMNTPVVKSALEMGFNRDLVKQTVQSKILTTGENYKTVNDIVSALLN 163
Query: 181 GVKISNWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVS 240
+ + + D ++ + L +
Sbjct: 164 AEDEKREEEKEKQAEEMASDDLSLIRKNRMALFQQLTCVLPILDNLLKANVINKQEHD-- 221
Query: 241 FIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFLARDNQA 300
I+ + L VK + I + ++
Sbjct: 222 -IIKQKTQIPLQARELIDTILVKGNAAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDV 280
Query: 301 TQANMINLRALDAKDPGC 318
+ ++ ++ C
Sbjct: 281 SGLSLEEQLRRLQEERTC 298
Score = 86.6 bits (212), Expect = 1e-18
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 136 TMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMA 195
+M +R+RTF WPS+ PV +++A AGF+Y G +V+CF+C + W D
Sbjct: 2 SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWV 61
Query: 196 KHRAKDPGCPFVK 208
+H P C F+
Sbjct: 62 EHAKWFPRCEFLI 74
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif,
apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} PDB:
3oz1_A*
Length = 122
Score = 130 bits (328), Expect = 3e-36
Identities = 41/100 (41%), Positives = 66/100 (66%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
+ ++ T +R+ TF WP P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D
Sbjct: 12 ISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGD 71
Query: 448 EPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVF 487
+PW EHA+WFP C F++ +KG++F+++ P + +++
Sbjct: 72 DPWVEHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLL 111
Score = 97.8 bits (243), Expect = 2e-24
Identities = 30/71 (42%), Positives = 38/71 (53%)
Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
+ + R+ TF WP S V PE LA GFYY+ + D VKC C + WE GD+ E
Sbjct: 17 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 76
Query: 284 HKRQSPNCPFL 294
H + P C FL
Sbjct: 77 HAKWFPRCEFL 87
Score = 90.1 bits (223), Expect = 9e-22
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 124 DKKYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVK 183
+ S +++M +R+RTF WPS+ PV +++A AGF+Y G +V+CF C
Sbjct: 4 SLETLRFSISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGG 63
Query: 184 ISNWTYNDSVMAKHRAKDPGCPFVK 208
+ W D +H P C F+
Sbjct: 64 LRCWESGDDPWVEHAKWFPRCEFLI 88
Score = 88.5 bits (219), Expect = 3e-21
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M +R+RTF WPS+ PV +++A AGF+Y G +V+CF C + W D +
Sbjct: 17 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 76
Query: 61 HRAKDPGCPFVK 72
H P C F+
Sbjct: 77 HAKWFPRCEFLI 88
Score = 52.7 bits (126), Expect = 1e-08
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
+ + R+ TF WP S V PE LA GFYY+ + D
Sbjct: 17 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDD 54
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A
{Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A
1jd6_A 1q4q_A
Length = 124
Score = 130 bits (328), Expect = 3e-36
Identities = 48/111 (43%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 375 KDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCF 434
+ R + P++P + +R+ TF WPR+ P LA AGFFY G GD VRCF
Sbjct: 5 ETCRPSAASGNYFPQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCF 64
Query: 435 HCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDE 485
C GGL W DEPW +HA W +C FV L+KG+ +I DT+ A P + +E
Sbjct: 65 SCGGGLMDWNDNDEPWEQHALWLSQCRFVKLMKGQLYI-DTVAAKPVLAEE 114
Score = 96.6 bits (240), Expect = 4e-24
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
Y +E+ RL TF WP + P LA+ GF+Y GD+V+C C + W D +
Sbjct: 23 YAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQ 82
Query: 284 HKRQSPNCPFL 294
H C F+
Sbjct: 83 HALWLSQCRFV 93
Score = 88.9 bits (220), Expect = 2e-21
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
E +RLRTF++WP N ++A+AGFFYTG V+CF+CG + +W ND +
Sbjct: 23 YAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQ 82
Query: 61 HRAKDPGCPFVK 72
H C FVK
Sbjct: 83 HALWLSQCRFVK 94
Score = 88.9 bits (220), Expect = 2e-21
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
E +RLRTF++WP N ++A+AGFFYTG V+CF+CG + +W ND +
Sbjct: 23 YAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQ 82
Query: 197 HRAKDPGCPFVK 208
H C FVK
Sbjct: 83 HALWLSQCRFVK 94
Score = 53.0 bits (127), Expect = 7e-09
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGD 374
Y +E+ RL TF WP + P LA+ GF+Y GD
Sbjct: 23 YAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGD 59
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger,
apoptosis, cytoplasm, metal-binding, polymorphism, zinc,
zinc-finger, alternative splicing, hydrolase, protease;
1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A*
2uvl_A
Length = 97
Score = 127 bits (321), Expect = 2e-35
Identities = 40/87 (45%), Positives = 61/87 (70%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
+ ++ T +R+ TF WP P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D
Sbjct: 6 ISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGD 65
Query: 448 EPWSEHARWFPECHFVMLVKGEQFIED 474
+PW EHA+WFP C F++ +KG++F+++
Sbjct: 66 DPWVEHAKWFPRCEFLIRMKGQEFVDE 92
Score = 98.0 bits (244), Expect = 7e-25
Identities = 30/71 (42%), Positives = 38/71 (53%)
Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
+ + R+ TF WP S V PE LA GFYY+ + D VKC C + WE GD+ E
Sbjct: 11 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 70
Query: 284 HKRQSPNCPFL 294
H + P C FL
Sbjct: 71 HAKWFPRCEFL 81
Score = 88.8 bits (220), Expect = 1e-21
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 131 SFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYN 190
S +++M +R+RTF WPS+ PV +++A AGF+Y G +V+CF C + W
Sbjct: 5 SISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESG 64
Query: 191 DSVMAKHRAKDPGCPFVK 208
D +H P C F+
Sbjct: 65 DDPWVEHAKWFPRCEFLI 82
Score = 88.4 bits (219), Expect = 2e-21
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M +R+RTF WPS+ PV +++A AGF+Y G +V+CF C + W D +
Sbjct: 11 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 70
Query: 61 HRAKDPGCPFVK 72
H P C F+
Sbjct: 71 HAKWFPRCEFLI 82
Score = 52.6 bits (126), Expect = 7e-09
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
+ + R+ TF WP S V PE LA GFYY+ + D
Sbjct: 11 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDD 48
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide
complex, apoptosis inhibition, peptidomimetic, small
molecule, drug design, inhibitor/apoptosis complex; HET:
BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A*
3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A*
1oxn_A* 1oxq_A* 1oy7_A*
Length = 133
Score = 127 bits (319), Expect = 7e-35
Identities = 41/107 (38%), Positives = 65/107 (60%)
Query: 368 YYLKQGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQ 427
+ L+ +++ G R P P + + + R+ +F WP + + P+ LA AGFF+ G
Sbjct: 20 HMLETEEEEEEGAGATLSRGPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGH 79
Query: 428 GDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLVKGEQFIED 474
D VRCF C GGL+ W D+PW+EHA+WFP C F++ KG+++I +
Sbjct: 80 QDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSKGQEYINN 126
Score = 97.0 bits (241), Expect = 4e-24
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
E RLA+F +WP++ V PE LA GF++ DKV+C +C + W++GD+ +E
Sbjct: 45 MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 104
Query: 284 HKRQSPNCPFL 294
H + P C FL
Sbjct: 105 HAKWFPGCQFL 115
Score = 85.1 bits (210), Expect = 6e-20
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M E RL +F WP + V + +A AGFF+TGHQ +V+CF C + +W D +
Sbjct: 45 MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 104
Query: 61 HRAKDPGCPFVK 72
H PGC F+
Sbjct: 105 HAKWFPGCQFLL 116
Score = 85.1 bits (210), Expect = 6e-20
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
M E RL +F WP + V + +A AGFF+TGHQ +V+CF C + +W D +
Sbjct: 45 MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 104
Query: 197 HRAKDPGCPFVK 208
H PGC F+
Sbjct: 105 HAKWFPGCQFLL 116
Score = 55.8 bits (134), Expect = 1e-09
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 15/96 (15%)
Query: 280 AESEHKRQSPNCPFLARDNQATQANMINLRALDAKDPGCPFVKNPEASGNVSIENEEVYK 339
S H + ++M+ + + G + P G
Sbjct: 2 GSSHHHHHHSSGEV------PRGSHMLETEEEEEEGAGATLSRGPAFPG---------MG 46
Query: 340 LESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
E RLA+F +WP++ V PE LA GF++ DK
Sbjct: 47 SEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDK 82
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo
sapiens}
Length = 106
Score = 123 bits (311), Expect = 5e-34
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSP-LGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
++R+ +F WP + P L+ AGF + G+ D V+CF C G L W
Sbjct: 13 GGKMRYQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEG 72
Query: 447 DEPWSEHARWFPECHFVMLVKGEQFIEDTIK 477
D+PW EHA+WFP+C F+ K + I I+
Sbjct: 73 DDPWKEHAKWFPKCEFLRSKKSSEEITQYIQ 103
Score = 93.8 bits (233), Expect = 3e-23
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 224 YKLESGRLATFNNWPVSF-IVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAES 282
Y+ E RLA+F NWP ++P L++ GF + + D V+C C +G WE+GD+
Sbjct: 18 YQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWK 77
Query: 283 EHKRQSPNCPFL 294
EH + P C FL
Sbjct: 78 EHAKWFPKCEFL 89
Score = 84.2 bits (208), Expect = 7e-20
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MNFERSRLRTFQSWPSNSP-VSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMA 59
E +RL +F++WP +S +++AGF +TG Q VQCF+CG + NW D
Sbjct: 18 YQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWK 77
Query: 60 KHRAKDPGCPFVKN 73
+H P C F+++
Sbjct: 78 EHAKWFPKCEFLRS 91
Score = 84.2 bits (208), Expect = 7e-20
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 137 MNFERSRLRTFQSWPSNSP-VSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMA 195
E +RL +F++WP +S +++AGF +TG Q VQCF+CG + NW D
Sbjct: 18 YQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWK 77
Query: 196 KHRAKDPGCPFVKN 209
+H P C F+++
Sbjct: 78 EHAKWFPKCEFLRS 91
Score = 48.0 bits (114), Expect = 3e-07
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 338 YKLESGRLATFNNWPVSF-IVTPEALAKTGFYYLKQGD 374
Y+ E RLA+F NWP ++P L++ GF + + D
Sbjct: 18 YQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQD 55
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small
molecule drug discovery, structur drug design, ligase,
metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB:
1nw9_A 2vsl_A
Length = 95
Score = 123 bits (310), Expect = 5e-34
Identities = 35/90 (38%), Positives = 61/90 (67%), Gaps = 2/90 (2%)
Query: 385 HRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWT 444
H +P++P+++ ++R+ TF TW + + LA AGF+ G+GD V+CFHC GGL W
Sbjct: 3 HMLPRNPSMADYEARIFTFGTWI--YSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWK 60
Query: 445 AMDEPWSEHARWFPECHFVMLVKGEQFIED 474
++PW +HA+W+P C +++ KG+++I +
Sbjct: 61 PSEDPWEQHAKWYPGCKYLLEQKGQEYINN 90
Score = 92.6 bits (230), Expect = 4e-23
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
R+ TF W S V E LA+ GFY L +GDKVKC +C + W+ ++ +
Sbjct: 11 MADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 68
Query: 284 HKRQSPNCPFL 294
H + P C +L
Sbjct: 69 HAKWYPGCKYL 79
Score = 83.0 bits (205), Expect = 1e-19
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M +R+ TF +W V+ +++A+AGF+ G +V+CF CG +++W ++ +
Sbjct: 11 MADYEARIFTFGTWIY--SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 68
Query: 61 HRAKDPGCPFVKN 73
H PGC ++
Sbjct: 69 HAKWYPGCKYLLE 81
Score = 83.0 bits (205), Expect = 1e-19
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
M +R+ TF +W V+ +++A+AGF+ G +V+CF CG +++W ++ +
Sbjct: 11 MADYEARIFTFGTWIY--SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 68
Query: 197 HRAKDPGCPFVKN 209
H PGC ++
Sbjct: 69 HAKWYPGCKYLLE 81
Score = 48.3 bits (115), Expect = 2e-07
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGD 374
R+ TF W S V E LA+ GFY L +GD
Sbjct: 11 MADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGD 45
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle,
zinc-binding domain, apoptosis/apoptosis inhibitor
complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB:
3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A*
3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Length = 121
Score = 117 bits (294), Expect = 1e-31
Identities = 34/90 (37%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Query: 385 HRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWT 444
+P++P+++ ++R+ TF TW + + LA AGF+ G+GD V+CFHC GGL W
Sbjct: 17 TNLPRNPSMADYEARIFTFGTWI--YSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWK 74
Query: 445 AMDEPWSEHARWFPECHFVMLVKGEQFIED 474
++PW +HA+W+P C +++ KG+++I +
Sbjct: 75 PSEDPWEQHAKWYPGCKYLLEQKGQEYINN 104
Score = 91.2 bits (226), Expect = 3e-22
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
R+ TF W S V E LA+ GFY L +GDKVKC +C + W+ ++ +
Sbjct: 25 MADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 82
Query: 284 HKRQSPNCPFL 294
H + P C +L
Sbjct: 83 HAKWYPGCKYL 93
Score = 81.2 bits (200), Expect = 1e-18
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M +R+ TF +W V+ +++A+AGF+ G +V+CF CG +++W ++ +
Sbjct: 25 MADYEARIFTFGTWIY--SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 82
Query: 61 HRAKDPGCPFVKN 73
H PGC ++
Sbjct: 83 HAKWYPGCKYLLE 95
Score = 81.2 bits (200), Expect = 1e-18
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
M +R+ TF +W V+ +++A+AGF+ G +V+CF CG +++W ++ +
Sbjct: 25 MADYEARIFTFGTWIY--SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 82
Query: 197 HRAKDPGCPFVKN 209
H PGC ++
Sbjct: 83 HAKWYPGCKYLLE 95
Score = 48.4 bits (115), Expect = 3e-07
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
R+ TF W S V E LA+ GFY L +GDK
Sbjct: 25 MADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDK 60
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4;
protease-inhibitor, apoptosis-hydrolase complex; 2.40A
{Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Length = 141
Score = 115 bits (290), Expect = 9e-31
Identities = 35/100 (35%), Positives = 53/100 (53%)
Query: 382 VQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLR 441
+ + P++P + + ++R+ +F WP + L P+ LA AG +Y G GD V+CF C G L+
Sbjct: 30 ISDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLK 89
Query: 442 KWTAMDEPWSEHARWFPECHFVMLVKGEQFIEDTIKANPP 481
W D WSEH R FP C FV+ E ++
Sbjct: 90 NWEPCDRAWSEHRRHFPNCFFVLGRNLNIRSESDAVSSDR 129
Score = 97.5 bits (242), Expect = 3e-24
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 197 HRAKDPGCPFVKNPEASGNVSIENEEV------YKLESGRLATFNNWPVSFIVTPEALAK 250
P +G V ++ + E RL +F NWP +TP LA
Sbjct: 8 FALDRPSETHADYLLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELAS 67
Query: 251 TGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFL 294
G YY GD+V+C C + WE D A SEH+R PNC F+
Sbjct: 68 AGLYYTGIGDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFV 111
Score = 90.9 bits (225), Expect = 8e-22
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M E +RL++FQ+WP + ++ + +A AG +YTG +VQCF CG K+ NW D ++
Sbjct: 41 MYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCDRAWSE 100
Query: 61 HRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVS 104
HR P C FV + + +++ N+P S
Sbjct: 101 HRRHFPNCFFVLGRNLNIRSESD----------AVSSDRNFPNS 134
Score = 90.9 bits (225), Expect = 8e-22
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
M E +RL++FQ+WP + ++ + +A AG +YTG +VQCF CG K+ NW D ++
Sbjct: 41 MYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCDRAWSE 100
Query: 197 HRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVS 240
HR P C FV + + +++ N+P S
Sbjct: 101 HRRHFPNCFFVLGRNLNIRSESD----------AVSSDRNFPNS 134
Score = 54.0 bits (129), Expect = 6e-09
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 307 NLRALDAKDPGCPFVKNPEASGNVSIENEEV------YKLESGRLATFNNWPVSFIVTPE 360
+ P +G V ++ + E RL +F NWP +TP
Sbjct: 4 SRDHFALDRPSETHADYLLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPR 63
Query: 361 ALAKTGFYYLKQGD 374
LA G YY GD
Sbjct: 64 ELASAGLYYTGIGD 77
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling
protein/apoptosis complex; 1.80A {Homo sapiens} PDB:
2pop_B
Length = 94
Score = 113 bits (283), Expect = 2e-30
Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 385 HRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWT 444
+ K +R+ TF +P SP+ +LA AGF Y G+GD VRCF C + +W
Sbjct: 10 ADINKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQ 69
Query: 445 AMDEPWSEHARWFPECHFV 463
D H + P C F+
Sbjct: 70 YGDSAVGRHRKVSPNCRFI 88
Score = 99.6 bits (248), Expect = 1e-25
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 220 NEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDN 279
EE + E RL TF N+P V+ LA+ GF Y +GD V+C C + RW+ GD+
Sbjct: 14 KEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDS 73
Query: 280 AESEHKRQSPNCPFL 294
A H++ SPNC F+
Sbjct: 74 AVGRHRKVSPNCRFI 88
Score = 90.7 bits (225), Expect = 2e-22
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
E +RL+TF ++PS SPVS+ +A+AGF YTG V+CF+C + W Y DS + +
Sbjct: 18 FVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGR 77
Query: 61 HRAKDPGCPFVKN 73
HR P C F+
Sbjct: 78 HRKVSPNCRFING 90
Score = 90.7 bits (225), Expect = 2e-22
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
E +RL+TF ++PS SPVS+ +A+AGF YTG V+CF+C + W Y DS + +
Sbjct: 18 FVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGR 77
Query: 197 HRAKDPGCPFVKN 209
HR P C F+
Sbjct: 78 HRKVSPNCRFING 90
Score = 52.2 bits (125), Expect = 8e-09
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 334 NEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
EE + E RL TF N+P V+ LA+ GF Y +GD
Sbjct: 14 KEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDT 55
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis,
cytoplasm, polymorphism, zinc, zinc-FIN metal binding
protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Length = 85
Score = 111 bits (278), Expect = 1e-29
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 387 VPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAM 446
+ + S R+ T++T+P P+ +SLA AGF+Y G D V+CF C L W
Sbjct: 3 LGSKYDFSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLG 62
Query: 447 DEPWSEHARWFPECHFV 463
D P +H + +P C F+
Sbjct: 63 DSPIQKHKQLYPSCSFI 79
Score = 98.0 bits (244), Expect = 4e-25
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
+ E R++T++ +P V+ +LA+ GFYY DKVKC C +++ W+ GD+ +
Sbjct: 9 FSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQK 68
Query: 284 HKRQSPNCPFL 294
HK+ P+C F+
Sbjct: 69 HKQLYPSCSFI 79
Score = 92.6 bits (230), Expect = 4e-23
Identities = 29/77 (37%), Positives = 49/77 (63%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
+ E R+ T+ ++P+ PVS + +A+AGF+YTG +V+CF CG+ + NW DS + K
Sbjct: 9 FSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQK 68
Query: 61 HRAKDPGCPFVKNPEAS 77
H+ P C F++N ++
Sbjct: 69 HKQLYPSCSFIQNLVSA 85
Score = 92.6 bits (230), Expect = 4e-23
Identities = 29/77 (37%), Positives = 49/77 (63%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
+ E R+ T+ ++P+ PVS + +A+AGF+YTG +V+CF CG+ + NW DS + K
Sbjct: 9 FSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQK 68
Query: 197 HRAKDPGCPFVKNPEAS 213
H+ P C F++N ++
Sbjct: 69 HKQLYPSCSFIQNLVSA 85
Score = 51.8 bits (124), Expect = 1e-08
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGD 374
+ E R++T++ +P V+ +LA+ GFYY D
Sbjct: 9 FSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVND 45
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor;
apoptosis, signaling protein, zinc binding; 2.50A {Homo
sapiens}
Length = 111
Score = 111 bits (278), Expect = 2e-29
Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 385 HRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWT 444
+ K +R+ TF +P SP+ +LA AGF Y G+GD VRCF C + +W
Sbjct: 27 ADINKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQ 86
Query: 445 AMDEPWSEHARWFPECHFV 463
D H + P C F+
Sbjct: 87 YGDSAVGRHRKVSPNCRFI 105
Score = 101 bits (253), Expect = 4e-26
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 197 HRAKDPGCPFVKNPEASGNVSIE--NEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFY 254
H + V + EE + E RL TF N+P V+ LA+ GF
Sbjct: 6 HHHHHSSGLVPRGSHMKTCVPADINKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFL 65
Query: 255 YLKQGDKVKCAYCSVIIGRWEQGDNAESEHKRQSPNCPFL 294
Y +GD V+C C + RW+ GD+A H++ SPNC F+
Sbjct: 66 YTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFI 105
Score = 90.0 bits (223), Expect = 7e-22
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
E +RL+TF ++PS SPVS+ +A+AGF YTG V+CF+C + W Y DS + +
Sbjct: 35 FVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGR 94
Query: 61 HRAKDPGCPFVKN 73
HR P C F+
Sbjct: 95 HRKVSPNCRFING 107
Score = 90.0 bits (223), Expect = 7e-22
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
E +RL+TF ++PS SPVS+ +A+AGF YTG V+CF+C + W Y DS + +
Sbjct: 35 FVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGR 94
Query: 197 HRAKDPGCPFVKN 209
HR P C F+
Sbjct: 95 HRKVSPNCRFING 107
Score = 53.8 bits (129), Expect = 3e-09
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 316 PGCPFVKNPEASGNVSIE--NEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQG 373
+ V + EE + E RL TF N+P V+ LA+ GF Y +G
Sbjct: 11 SSGLVPRGSHMKTCVPADINKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEG 70
Query: 374 DK 375
D
Sbjct: 71 DT 72
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle,
long helix, protein complex, alternative splicing,
apoptosis, cell cycle, cell division; HET: MES; 1.40A
{Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A
4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A*
3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A*
3uik_A 3uij_A 1m4m_A 2rax_A ...
Length = 142
Score = 111 bits (279), Expect = 3e-29
Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 8/129 (6%)
Query: 387 VPKHPNLSTLDSRVLTFTTWP--RDSPLGPQSLAVAGFFYDG---QGDWVRCFHCDGGLR 441
+P D R+ TF WP P+ +A AGF + + D +CF C L
Sbjct: 6 LPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELE 65
Query: 442 KWTAMDEPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTPKFF---VKSLE 498
W D+P EH + C F+ + K + + K K E
Sbjct: 66 GWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDRERAKNKIAKETNNKKKEFE 125
Query: 499 EEVRRLREA 507
E +++R A
Sbjct: 126 ETAKKVRRA 134
Score = 96.7 bits (240), Expect = 6e-24
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 5/131 (3%)
Query: 224 YKLESGRLATFNNWPV--SFIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGD 278
L+ R++TF NWP TPE +A+ GF + + D +C +C + WE D
Sbjct: 12 PFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDD 71
Query: 279 NAESEHKRQSPNCPFLARDNQATQANMINLRALDAKDPGCPFVKNPEASGNVSIENEEVY 338
+ EHK+ S C FL+ Q + + LD + K E +
Sbjct: 72 DPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDRERAKNKIAKETNNKKKEFEETAKKV 131
Query: 339 KLESGRLATFN 349
+ +LA +
Sbjct: 132 RRAIEQLAAMD 142
Score = 81.7 bits (201), Expect = 1e-18
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 1 MNFERSRLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYND 55
+ R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D
Sbjct: 12 PFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDD 71
Query: 56 SVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVS 104
+ +H+ GC F+ + E KL+ R +
Sbjct: 72 DPIEEHKKHSSGCAFLSV--KKQFEELTLGEFLKLDRERAKNKIAKETN 118
Score = 81.7 bits (201), Expect = 1e-18
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 137 MNFERSRLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYND 191
+ R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D
Sbjct: 12 PFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDD 71
Query: 192 SVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLATFNNWPVS 240
+ +H+ GC F+ + E KL+ R +
Sbjct: 72 DPIEEHKKHSSGCAFLSV--KKQFEELTLGEFLKLDRERAKNKIAKETN 118
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A
{Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A
3sip_E
Length = 116
Score = 105 bits (263), Expect = 2e-27
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 383 QNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRK 442
N + +L+ ++R+ TFT WP D + LA G ++ GD V+CF C +
Sbjct: 2 NNINKTRMNDLNREETRLKTFTDWPLDWLD-KRQLAQTGMYFTHAGDKVKCFFCGVEIGS 60
Query: 443 WTAMDEPWSEHARWFPECHFV 463
W D+P EH RW P C +
Sbjct: 61 WEQEDQPVPEHQRWSPNCPLL 81
Score = 100 bits (250), Expect = 1e-25
Identities = 35/71 (49%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
E RL TF +WP+ + + LA+TG Y+ GDKVKC +C V IG WEQ D E
Sbjct: 12 LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 70
Query: 284 HKRQSPNCPFL 294
H+R SPNCP L
Sbjct: 71 HQRWSPNCPLL 81
Score = 88.9 bits (220), Expect = 2e-21
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
+N E +RL+TF WP + + +++A+ G ++T +V+CF CGV+I +W D + +
Sbjct: 12 LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 70
Query: 61 HRAKDPGCPFVKNPEASGNVSIENE 85
H+ P CP ++ + NV I E
Sbjct: 71 HQRWSPNCPLLRR-RTTNNVPINAE 94
Score = 88.9 bits (220), Expect = 2e-21
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
+N E +RL+TF WP + + +++A+ G ++T +V+CF CGV+I +W D + +
Sbjct: 12 LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 70
Query: 197 HRAKDPGCPFVKNPEASGNVSIENE 221
H+ P CP ++ + NV I E
Sbjct: 71 HQRWSPNCPLLRR-RTTNNVPINAE 94
Score = 50.3 bits (120), Expect = 5e-08
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
E RL TF +WP+ + + LA+TG Y+ GDK
Sbjct: 12 LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDK 48
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 103 bits (258), Expect = 4e-27
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 494 VKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVR 553
+ L+E++R+L+EA LC +C ++E+ PCGH V C CA+ L CPVCR ++
Sbjct: 5 TRVLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQH 64
Query: 554 TFLS 557
+L
Sbjct: 65 VYLP 68
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 103 bits (258), Expect = 4e-27
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 495 KSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRT 554
S EE++RRL+E +LCKICMD+ + +V +PCGHLVTC CA ++ +CP+C I +
Sbjct: 13 ISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKI 72
Query: 555 FLS 557
F+S
Sbjct: 73 FMS 75
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila
melanogaster}
Length = 136
Score = 105 bits (263), Expect = 5e-27
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 379 DLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDG 438
L N + +L+ ++R+ TFT WP D + LA G ++ GD V+CF C
Sbjct: 20 QLFKNNINKTRMNDLNREETRLKTFTDWPLDWLD-KRQLAQTGMYFTHAGDKVKCFFCGV 78
Query: 439 GLRKWTAMDEPWSEHARWFPECHFV 463
+ W D+P EH RW P C +
Sbjct: 79 EIGSWEQEDQPVPEHQRWSPNCPLL 103
Score = 101 bits (253), Expect = 9e-26
Identities = 42/97 (43%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
E RL TF +WP+ + + LA+TG Y+ GDKVKC +C V IG WEQ D E
Sbjct: 34 LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 92
Query: 284 HKRQSPNCPFLARDNQATQANMINLRALDAKDPGCPF 320
H+R SPNCP L + T IN ALD P +
Sbjct: 93 HQRWSPNCPLL--RRRTTNNVPINAEALDRILPPISY 127
Score = 88.6 bits (219), Expect = 4e-21
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 126 KYFLISFRSITMNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKIS 185
K + R +N E +RL+TF WP + +++A+ G ++T +V+CF CGV+I
Sbjct: 23 KNNINKTRMNDLNREETRLKTFTDWPL-DWLDKRQLAQTGMYFTHAGDKVKCFFCGVEIG 81
Query: 186 NWTYNDSVMAKHRAKDPGCPFVKNPEASGNVSIENE 221
+W D + +H+ P CP ++ + NV I E
Sbjct: 82 SWEQEDQPVPEHQRWSPNCPLLRR-RTTNNVPINAE 116
Score = 88.6 bits (219), Expect = 5e-21
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
+N E +RL+TF WP + +++A+ G ++T +V+CF CGV+I +W D + +
Sbjct: 34 LNREETRLKTFTDWPL-DWLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 92
Query: 61 HRAKDPGCPFVKNPEASGNVSIENE 85
H+ P CP ++ + NV I E
Sbjct: 93 HQRWSPNCPLLRR-RTTNNVPINAE 116
Score = 50.1 bits (119), Expect = 1e-07
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
E RL TF +WP+ + + LA+TG Y+ GDK
Sbjct: 34 LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDK 70
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 82.5 bits (204), Expect = 9e-20
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 506 EARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKATVRTFLS 557
++ C +C + V VLLPC H C C +CP+CR+ ++ +
Sbjct: 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGP 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 69.5 bits (170), Expect = 3e-15
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 508 RLCKICMD--KEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIKATVRTFLS 557
+ C +C ++ ++ GHLVTC CA L CP+C++ I+ ++ F++
Sbjct: 8 KPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation,
alternative splicing, HOST-virus interaction, UBL
conjugation pathway, zinc-finger, polymorphism; HET:
FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Length = 64
Score = 67.9 bits (166), Expect = 9e-15
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 502 RRLREARLCKICMDKEVGVVLLP--CGHLVTCVLCASSLPR----CPVCRENIKATVRTF 555
L C IC + ++ GHL+ C CA L + CPVCR+ I+ V T+
Sbjct: 3 LPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62
Query: 556 L 556
Sbjct: 63 F 63
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 53.6 bits (128), Expect = 7e-08
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 495 KSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIK 549
+ E +LCKIC + + V + PCGHL+ C C +S CP CR IK
Sbjct: 320 EQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIK 378
Query: 550 AT 551
T
Sbjct: 379 GT 380
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 43.9 bits (104), Expect = 3e-06
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 498 EEEVRRLREARLCKICMDKEVGVVLLPCGHL--VTCV---LCASSLPRCPVCRENIKAT 551
V++L + C ICMD ++LPC H C+ CP+CR +
Sbjct: 6 SGRVKQLTDEEECCICMDGRA-DLILPCAHSFCQKCIDKWSDRHR--NCPICRLQMTGA 61
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 42.5 bits (100), Expect = 1e-05
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 493 FVKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLC-----ASSLPRCPVCREN 547
FVK++E++ C+ C CGH C C +SS P+C C+E+
Sbjct: 8 FVKTVEDKY-------KCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQES 59
Query: 548 IK 549
I
Sbjct: 60 IV 61
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 41.4 bits (97), Expect = 3e-05
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENI 548
C IC+ V V LPC H V C LC RC +CR+ I
Sbjct: 18 CAICLQTCVHPVSLPCKH-VFCYLCVKGASWLGKRCALCRQEI 59
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 40.4 bits (95), Expect = 5e-05
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 498 EEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLP-RCPVCRE 546
EEE + LR C+ C + LLPC H C C + +CP+C+
Sbjct: 1 EEEFQFLR----CQQCQAEAKCPKLLPCLH-TLCSGCLEASGMQCPICQA 45
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 40.1 bits (94), Expect = 6e-05
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 506 EARLCKICMDK-EVGVVLLPCGHLVTCVLC----ASSLPRCPVCRENIKATVRTFLS 557
A C IC++ + LPC H C +C P CP+C+ +++ V T S
Sbjct: 4 VAERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTIES 59
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 41.5 bits (97), Expect = 8e-05
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 495 KSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLC-----ASSLPRCPVCRENIK 549
+ + ++ E C C + + C H V C C + + CP CR ++
Sbjct: 40 SPFQLFLSKVEETFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLG 98
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 41.2 bits (96), Expect = 2e-04
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 495 KSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIK 549
+ L L C IC + + V L C H C C + CP+CR++IK
Sbjct: 52 EVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIK 109
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 38.4 bits (90), Expect = 2e-04
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 11/48 (22%)
Query: 510 CKICMDK----EVGVVLLPCGHL--VTCV---LCASSLPRCPVCRENI 548
C IC++ V +LPCGHL TC L RCP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY--RCPLCSGPS 53
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 39.1 bits (91), Expect = 2e-04
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIK 549
C IC V+ C H C CA PRC +C +
Sbjct: 18 CFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTG 60
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 39.5 bits (92), Expect = 2e-04
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 498 EEEVRRLREARLCKICMDKEVGVVLLP-CGHLVTCVLC-----ASSLPRCPVCRENIK 549
E+ V + E C ICM+K L P C L C C +CP CR ++
Sbjct: 13 EQSVESIAEVFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQ 69
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn
binding domain, metal zinc, zinc-finger, metal binding
protein; NMR {Homo sapiens}
Length = 69
Score = 38.5 bits (90), Expect = 3e-04
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 494 VKSLEEEVRRLREARLCKICMDK-EVG--VVLLPCGHL--VTCV---LCASSLPRCPVCR 545
+K EE C IC+ E G V LPC HL CV L + +CP+CR
Sbjct: 1 MKQDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK--KCPICR 58
Query: 546 ENIKA 550
+I+A
Sbjct: 59 VDIEA 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 3e-04
Identities = 82/632 (12%), Positives = 166/632 (26%), Gaps = 197/632 (31%)
Query: 35 HQHEVQCFACGVKISNWTYND--SVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKL-- 90
H H F G + Y D SV + C V + ++ + EE+ +
Sbjct: 2 HHHHHMDFETGEH--QYQYKDILSVFEDAFVDNFDCKDV--QDMPKSI-LSKEEIDHIIM 56
Query: 91 ----ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKK-Y-FLIS-FRS-------IT 136
SG L F W + + E + + ++++ + Y FL+S ++ +T
Sbjct: 57 SKDAVSGTLRLF--W--TLLSKQEEMVQ---KFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAK----------------------AGFFYTGHQ-- 172
+ R R + + + R+ G G
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---GKTWV 166
Query: 173 -------HEVQC-FACGV---KISNWTYNDSVMAK-----HRAKDPGCPFVKNPEASGNV 216
++VQC + + N ++V+ ++ + + S N+
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID---PNWTSRSDHSSNI 223
Query: 217 SIENEEVYKLESGRLATFNNWPVSFIV-----TPEALAKTGFYYLKQGDKVKC------A 265
+ + + E RL + +V +A F + C
Sbjct: 224 KLRIHSI-QAELRRLLKSKPYENCLLVLLNVQNAKAWNA--F-------NLSCKILLTTR 273
Query: 266 YCSVIIGRWEQGDNAESEHKRQSP-NCPFLARDNQATQANMINLRALD----AKDPGCPF 320
+ V + A + H + + ++ ++ R D P
Sbjct: 274 FKQVT----DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-TNPR 328
Query: 321 V---------KNPEASGN--------------VSIEN------EEVYKLESGRLATFNN- 350
N S+ +++ RL+ F
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD----RLSVFPPS 384
Query: 351 -----------WPVSFIVTPEALAKTGFYY--LKQGDKDMR--DLGVQNHRVPKHPNLST 395
W + Y +++ K+ + K N
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 396 LDSRVLTFTTWPRDSP---LGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSE 452
L ++ P+ L P L +FY G H L+ E +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLD--QYFYSHIG-----HH----LKN-IEHPERMTL 492
Query: 453 HARWFPECHFVM----------------------LVKGEQFIEDTIKANPPITDEVFFTP 490
F + F+ L + +I D N P + +
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD----NDPKYERLVNAI 548
Query: 491 KFFVKSLEEEVRRLREARLCKICMDKEVGVVL 522
F+ +EE + + L +I + E +
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Score = 31.7 bits (71), Expect = 0.83
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 46/117 (39%)
Query: 463 VMLVKGEQ----FIEDTIKAN--------------PPITDEVFFT------------PKF 492
+L K E+ F+E+ ++ N P + ++ K+
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 493 FVKSLEEEVRRLREARLCKICMDKEVGVVL---LPCGHLVTCVLCASSLPRCPVCRE 546
V + +LR+A L + + V++ L G + VC
Sbjct: 130 NVSR-LQPYLKLRQA-LLE--LRPAKNVLIDGVLGSG---KTWVALD------VCLS 173
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 37.7 bits (88), Expect = 8e-04
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 22/81 (27%)
Query: 478 ANPPITDEVFFTPKFFVKSLE-----EEVRRLREARLCKICMDK-EVG--VVLLPCGHL- 528
ANPP K + +L E+ + + C IC + G LPC H
Sbjct: 13 ANPP-------ASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYF 65
Query: 529 -VTCV---LCASSLPRCPVCR 545
CV L S CPVCR
Sbjct: 66 HKPCVSIWLQKSG--TCPVCR 84
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 37.1 bits (86), Expect = 0.001
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 498 EEEVRRLREARLCKICMDK-EVG--VVLLPCGHL--VTCV---LCASSLPRCPVCRENI 548
+V+ L LC +C++ + + + PC H C+ L + CP+C +
Sbjct: 6 SGKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKV--CPLCNMPV 62
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 37.4 bits (87), Expect = 0.001
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 12/51 (23%)
Query: 510 CKICMD--KEVGVV--LLPCGHLVTCVLCASSLP-------RCPVCRENIK 549
C ICM+ E + LL CGH + C C L RCP C + +
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITR 67
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 36.5 bits (85), Expect = 0.002
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 14/70 (20%)
Query: 490 PKFFVKSLEEEVRRLREARLCKICMDK-EVGVVL--LPCGHL--VTCV---LCASSLPRC 541
P + + E LC +CM E +L LPC H CV L A+ C
Sbjct: 10 PSYRFNPNNHQ----SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR--TC 63
Query: 542 PVCRENIKAT 551
P+CR + +
Sbjct: 64 PICRADSGPS 73
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 37.1 bits (86), Expect = 0.002
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 500 EVRRLREARLCKICMDKEVGVVLLP-CGHLVTCVLCA----SSLPRCPVCRENI 548
++ + + C IC + +++P C H C LC S +CP C +
Sbjct: 15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTV 67
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 36.2 bits (84), Expect = 0.002
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 501 VRRLREARLCKICMDKEVGVVLLPCGHLVTCVLC-------ASSLPRCPVCRE 546
V +L+E +C IC+D V + CGH C+ C + +CP+C+
Sbjct: 14 VNKLQEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKT 65
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 38.1 bits (88), Expect = 0.002
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 494 VKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLC-----ASSLPRCPVCRENI 548
+ +++L ++ +C C + V C H V C C + + CP CR ++
Sbjct: 65 LVEGPNFLKKLEQSFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDL 123
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 36.2 bits (84), Expect = 0.002
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 11/56 (19%)
Query: 501 VRRLREARLCKICMDKEVGVVLLPCGHLVTCVLC----------ASSLPRCPVCRE 546
+ ++E C IC++ V C H C C CPVCR
Sbjct: 13 LEMIKEEVTCPICLELLKEPVSADCNH-SFCRACITLNYESNRNTDGKGNCPVCRV 67
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 36.8 bits (85), Expect = 0.003
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 510 CKICMDKEVGVVLLPCGHLVTCVLC-----ASSLPRCPVCRENIKATVR 553
C ICM+ V V LPC H + C C + CP CR + + R
Sbjct: 18 CGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSSWTR 65
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 35.7 bits (82), Expect = 0.003
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 510 CKICMD-------KEVGVVLLPCGHL--VTCVLCA-SSLPRCPVCRENIK 549
C ICMD +V CGH+ C+ + + CP CR+ I
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 36.7 bits (85), Expect = 0.003
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 13/62 (20%)
Query: 493 FVKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLC-----ASSLPRCPVCREN 547
F LE + C IC+ V PCGH C C + +CPV E
Sbjct: 11 FDPPLESKY-------ECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEI 62
Query: 548 IK 549
+
Sbjct: 63 LL 64
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 36.2 bits (84), Expect = 0.004
Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 494 VKSLEEEVRRLREARLCKICMDKEVGVVLLPCGH------LVTCVLCASSLPRCPVCRE 546
V+ ++ + +++ C IC++ V C H ++ + +CP+C+
Sbjct: 8 VEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 34.7 bits (80), Expect = 0.005
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 510 CKICMD-------KEVGVVLLPCGHL--VTCVLCA-SSLPRCPVCRENIK 549
C ICMD +V CGH+ C+ + + CP CR+ I
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 35.1 bits (81), Expect = 0.005
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 16/50 (32%)
Query: 510 CKICMDK-EVG--VVLLPCGHL--VTCVLCASSLPR------CPVCRENI 548
C +C + +G V LPC HL +C++ P CPVCR+++
Sbjct: 18 CPVCKEDYALGESVRQLPCNHLFHDSCIV-----PWLEQHDSCPVCRKSL 62
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 36.0 bits (83), Expect = 0.006
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 11/56 (19%)
Query: 494 VKSLEEEVRRLREARLCKICMDK-EVGVVLLPCGHLVTCVLCASSL--PRCPVCRE 546
+ LE+ +R C C + V L C H+ C C S CPVC
Sbjct: 16 LDRLEKLLR-------CSRCTNILREPVCLGGCEHIF-CSNCVSDCIGTGCPVCYT 63
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 34.4 bits (79), Expect = 0.007
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 510 CKICMD-------KEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIK 549
C ICMD +V CGH+ C C CP CR+ I
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKIN 62
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 36.2 bits (83), Expect = 0.007
Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 13/64 (20%)
Query: 488 FTPKFFVKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLC-----ASSLPRCP 542
F+ LE + LC C + CGH C C +S C
Sbjct: 19 FSKTLLGTKLEAKY-------LCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCA 70
Query: 543 VCRE 546
C
Sbjct: 71 ACVH 74
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 34.7 bits (79), Expect = 0.008
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 10/54 (18%)
Query: 505 REARLCKICMDK----EVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIK 549
+ C +CM+ ++ CG+ + C C + CP CR+
Sbjct: 9 EDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYP 61
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 34.0 bits (78), Expect = 0.013
Identities = 14/56 (25%), Positives = 17/56 (30%), Gaps = 6/56 (10%)
Query: 501 VRRLREARLCKICMDK-EVGVVLLPCGHLVTCVLC----ASSLPRCPVCRENIKAT 551
+ L LC IC + C H C C RCP C + T
Sbjct: 9 LSELTPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQT 63
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 34.8 bits (80), Expect = 0.015
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 19/71 (26%)
Query: 489 TPKFFVKSLEEEVRRLREARLCKICMDKEVG-VVLLPCGHLVTCVLCASSL-------PR 540
T + + L + C +C + ++ C H C + +
Sbjct: 4 TTRIKITELNPHLM-------CVLCGGYFIDATTIIECLH----SFCKTCIVRYLETSKY 52
Query: 541 CPVCRENIKAT 551
CP+C + T
Sbjct: 53 CPICDVQVHKT 63
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 32.7 bits (75), Expect = 0.021
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 15/59 (25%)
Query: 493 FVKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLC-------ASSLPRCPVC 544
+++L+ E C +C++ V++ CGH C C CPVC
Sbjct: 8 ALENLQVEA-------SCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC 58
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 33.4 bits (77), Expect = 0.022
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 17/63 (26%)
Query: 494 VKSLEEEVRRLREARLCKICMDKEVGVVLLPCGH----------LVTCVLCASSLPRCPV 543
+++EEV C IC++ + L CGH V CPV
Sbjct: 6 SGNVQEEV-------TCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPV 58
Query: 544 CRE 546
C
Sbjct: 59 CGI 61
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 33.1 bits (76), Expect = 0.022
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 13/58 (22%)
Query: 493 FVKSLEEEVRRLREARLCKICMDKEVGVVLLPCGH------LVTCVLCASSLPRCPVC 544
FV L+EEV +C IC+D V + CGH + + +CP+C
Sbjct: 13 FVNKLQEEV-------ICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.026
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 83 ENEEVYKLESGRLATFNNWPVSFIVTPEALA 113
E + + KL++ L + S P ALA
Sbjct: 18 EKQALKKLQA-SLKLYA--DDS---AP-ALA 41
Score = 34.9 bits (79), Expect = 0.026
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 219 ENEEVYKLESGRLATFNNWPVSFIVTPEALA 249
E + + KL++ L + S P ALA
Sbjct: 18 EKQALKKLQA-SLKLYA--DDS---AP-ALA 41
Score = 34.9 bits (79), Expect = 0.026
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 333 ENEEVYKLESGRLATFNNWPVSFIVTPEALA 363
E + + KL++ L + S P ALA
Sbjct: 18 EKQALKKLQA-SLKLYA--DDS---AP-ALA 41
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 32.2 bits (74), Expect = 0.033
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 11/48 (22%)
Query: 510 CKICM----DKEVGVVLLPCGHL--VTCV---LCASSLPRCPVCRENI 548
C +C+ D E L CGH CV L + S CP+CR +
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS--TCPLCRLTV 53
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 33.2 bits (76), Expect = 0.036
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 497 LEEEVRRLREARLCKICMDKEVGVVLLP-CGHLVTCVLC------ASSLPRCPVCRE 546
L E + + LC IC D V++P CG+ C C S CP C +
Sbjct: 3 LGSEDDPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQ 58
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 33.7 bits (77), Expect = 0.037
Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 13/64 (20%)
Query: 493 FVKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLC-----ASSLPRCPVCREN 547
F + + C+IC V C HL C +C CP CR
Sbjct: 16 FPAHFVKSIS-------CQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYP 67
Query: 548 IKAT 551
T
Sbjct: 68 CFPT 71
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 32.6 bits (75), Expect = 0.040
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 16/63 (25%)
Query: 493 FVKSLEEEVRRLREARLCKICMDKEVGVVLLPCGH------LVTC---VLCASSLPRCPV 543
+ +++EEV C IC++ + L CGH L + CPV
Sbjct: 12 ILVNVKEEV-------TCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPV 64
Query: 544 CRE 546
CR
Sbjct: 65 CRI 67
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 33.5 bits (76), Expect = 0.075
Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 13/64 (20%)
Query: 493 FVKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL-----PRCPVCREN 547
F LE + C IC+ V PCGH C C +CPV E
Sbjct: 11 FDPPLESKY-------ECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEI 62
Query: 548 IKAT 551
+
Sbjct: 63 LLEN 66
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 32.5 bits (73), Expect = 0.091
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 27/84 (32%)
Query: 489 TPKFFVKSLEEEVRRLREARLCKICMDK------------------EVGVVLLPCGHL-- 528
P+ ++ EE++ E C ICM+K V L C H
Sbjct: 8 EPEQVIRKYTEELKVAPEED-CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFH 66
Query: 529 VTCVL------CASSLPRCPVCRE 546
+ C+L +CP C+
Sbjct: 67 LLCLLAMYCNGNKDGSLQCPSCKT 90
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 31.5 bits (71), Expect = 0.36
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 16/61 (26%)
Query: 495 KSLEEEVRRLREARLCKICMD--KEVGVVLLPCGHLVTCVLC-----ASSLPRCPVCREN 547
+SL E+ C IC+D K + C H C C S CP CR+
Sbjct: 49 RSLHSELM-------CPICLDMLKNT-MTTKECLH-RFCADCIITALRSGNKECPTCRKK 99
Query: 548 I 548
+
Sbjct: 100 L 100
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 29.7 bits (67), Expect = 0.38
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 498 EEEVRRLREARLCKICMDKEVGVVLLP-CGHLVTCVLC------ASSLPRCPVCRENI 548
E + + LC IC D V++P CG+ C C S CP C +N
Sbjct: 6 SGEDDPIPDELLCLICKDIMTDAVVIPCCGN-SYCDECIRTALLESDEHTCPTCHQND 62
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 31.9 bits (72), Expect = 0.59
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 491 KFFVKSLEEEV----RRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSL 538
+F ++++EE+ R+ + R +I + G ++ G T VL S
Sbjct: 29 RFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGK--TRVLGQVSC 78
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 28.4 bits (63), Expect = 1.3
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 510 CKICMDK-EVGVVLLPCGHL--VTCV---LCASSLPRCPVCRENI 548
C IC G CG + CV +++ PRCP C +
Sbjct: 18 CNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 29.0 bits (64), Expect = 1.8
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 12/51 (23%)
Query: 510 CKICMDK-------EVGVVLLPCGHLVTCVLC----ASSLPRCPVCRENIK 549
C ICMD +V CGH+ C C + CP CR+ I
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKIN 59
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 2.8
Identities = 39/255 (15%), Positives = 76/255 (29%), Gaps = 81/255 (31%)
Query: 320 FVKN-PEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFY---------- 368
F K PE + + ++E E + F + ++ + +K G +
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAEL--VGKF----LGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 369 ----YLKQGD---------KDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPR--DSPL- 412
YL+ D ++ V+ + K + + +R++ + + +S L
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIK----NYITARIMAKRPFDKKSNSALF 146
Query: 413 -----GPQSL-AVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVMLV 466
G L A+ G GQG+ F LR V
Sbjct: 147 RAVGEGNAQLVAIFG----GQGNTDDYF---EELRDLYQTYHV------------LV--- 184
Query: 467 KGEQFIEDTIK-----ANPPITDEVFFTPKFFVKS-LEEEVRRLREARLCKICMDKEV-- 518
I+ + + + E FT + LE + L I +
Sbjct: 185 --GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI----PISC 238
Query: 519 -GVVLLPCGH-LVTC 531
+ ++ H +VT
Sbjct: 239 PLIGVIQLAHYVVTA 253
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea,
translation-transport complex; HET: ADP; 6.60A
{Pyrococcus furiosus}
Length = 357
Score = 28.6 bits (63), Expect = 5.3
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 459 ECHFVMLVKGEQFIEDTIKANPPITDEVFFTPKFFVKSLEEEVRRLREARLCKICMDKEV 518
+ G+ I+ +T + + ++ L+E V + AR+ + +D
Sbjct: 87 YASREDVPLGKYHTIA-IEQGTVVTIQKPRWKEHHIERLKEAVAASKRARVMIVVIDDGE 145
Query: 519 GVVLLPCGHLVTCV 532
+ L + V +
Sbjct: 146 ADMALVREYGVEIL 159
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 26.4 bits (58), Expect = 6.3
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 509 LCKICM----DKEVGVVLLPCGHL--VTCVL-CASSLPRCPVCRENIK 549
C C ++ VV C H C+ RCP+C+++
Sbjct: 28 ACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.433
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,809,861
Number of extensions: 530024
Number of successful extensions: 1356
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1267
Number of HSP's successfully gapped: 151
Length of query: 557
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 459
Effective length of database: 3,965,535
Effective search space: 1820180565
Effective search space used: 1820180565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.3 bits)