RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2747
(557 letters)
>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 105
Score = 124 bits (314), Expect = 6e-35
Identities = 47/98 (47%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
P++P + +R+ TF WPR+ P LA AGFFY G GD VRCF C GGL W D
Sbjct: 5 PQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDND 64
Query: 448 EPWSEHARWFPECHFVMLVKGEQFIEDTIKANPPITDE 485
EPW +HA W +C FV L+KG+ +I DT+ A P + +E
Sbjct: 65 EPWEQHALWLSQCRFVKLMKGQLYI-DTVAAKPVLAEE 101
Score = 100 bits (251), Expect = 3e-26
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
Y +E+ RL TF WP + P LA+ GF+Y GD+V+C C + W D +
Sbjct: 10 YAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQ 69
Query: 284 HKRQSPNCPFL 294
H C F+
Sbjct: 70 HALWLSQCRFV 80
Score = 92.3 bits (229), Expect = 3e-23
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
E +RLRTF++WP N ++A+AGFFYTG V+CF+CG + +W ND +
Sbjct: 10 YAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQ 69
Query: 61 HRAKDPGCPFVK 72
H C FVK
Sbjct: 70 HALWLSQCRFVK 81
Score = 92.3 bits (229), Expect = 3e-23
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
E +RLRTF++WP N ++A+AGFFYTG V+CF+CG + +W ND +
Sbjct: 10 YAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQ 69
Query: 197 HRAKDPGCPFVK 208
H C FVK
Sbjct: 70 HALWLSQCRFVK 81
Score = 51.4 bits (123), Expect = 6e-09
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
Y +E+ RL TF WP + P LA+ GF+Y GD+
Sbjct: 10 YAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDR 47
>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP,
livin) {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 122 bits (308), Expect = 3e-34
Identities = 38/87 (43%), Positives = 57/87 (65%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
P P + + + R+ +F WP + + P+ LA AGFF+ G D VRCF C GGL+ W D
Sbjct: 2 PAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGD 61
Query: 448 EPWSEHARWFPECHFVMLVKGEQFIED 474
+PW+EHA+WFP C F++ KG+++I +
Sbjct: 62 DPWTEHAKWFPGCQFLLRSKGQEYINN 88
Score = 102 bits (255), Expect = 6e-27
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
E RLA+F +WP++ V PE LA GF++ DKV+C +C + W++GD+ +E
Sbjct: 7 MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 66
Query: 284 HKRQSPNCPFL 294
H + P C FL
Sbjct: 67 HAKWFPGCQFL 77
Score = 93.3 bits (232), Expect = 9e-24
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M E RL +F WP + V + +A AGFF+TGHQ +V+CF C + +W D +
Sbjct: 7 MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 66
Query: 61 HRAKDPGCPFVK 72
H PGC F+
Sbjct: 67 HAKWFPGCQFLL 78
Score = 93.3 bits (232), Expect = 9e-24
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
M E RL +F WP + V + +A AGFF+TGHQ +V+CF C + +W D +
Sbjct: 7 MGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTE 66
Query: 197 HRAKDPGCPFVK 208
H PGC F+
Sbjct: 67 HAKWFPGCQFLL 78
>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 115 bits (290), Expect = 9e-32
Identities = 34/91 (37%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 384 NHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKW 443
+ +P++P+++ ++R+ TF TW + + LA AGF+ G+GD V+CFHC GGL W
Sbjct: 4 STNLPRNPSMADYEARIFTFGTWIY--SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDW 61
Query: 444 TAMDEPWSEHARWFPECHFVMLVKGEQFIED 474
++PW +HA+W+P C +++ KG+++I +
Sbjct: 62 KPSEDPWEQHAKWYPGCKYLLEQKGQEYINN 92
Score = 96.4 bits (240), Expect = 9e-25
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
R+ TF W S V E LA+ GFY L +GDKVKC +C + W+ ++ +
Sbjct: 13 MADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 70
Query: 284 HKRQSPNCPFL 294
H + P C +L
Sbjct: 71 HAKWYPGCKYL 81
Score = 87.2 bits (216), Expect = 1e-21
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M +R+ TF +W V+ +++A+AGF+ G +V+CF CG +++W ++ +
Sbjct: 13 MADYEARIFTFGTWIY--SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 70
Query: 61 HRAKDPGCPFV---KNPEASGNVSI 82
H PGC ++ K E N+ +
Sbjct: 71 HAKWYPGCKYLLEQKGQEYINNIHL 95
Score = 87.2 bits (216), Expect = 1e-21
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
M +R+ TF +W V+ +++A+AGF+ G +V+CF CG +++W ++ +
Sbjct: 13 MADYEARIFTFGTWIY--SVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQ 70
Query: 197 HRAKDPGCPFV---KNPEASGNVSI 218
H PGC ++ K E N+ +
Sbjct: 71 HAKWYPGCKYLLEQKGQEYINNIHL 95
Score = 47.1 bits (112), Expect = 2e-07
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
R+ TF W S V E LA+ GFY L +GDK
Sbjct: 13 MADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDK 48
>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens)
[TaxId: 9606]}
Length = 111
Score = 112 bits (282), Expect = 2e-30
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 388 PKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMD 447
P++P + + ++R+ +F WP + L P+ LA AG +Y G GD V+CF C G L+ W D
Sbjct: 29 PRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGD 88
Query: 448 EPWSEHARWFPECHFVM 464
WSEH R FP C FV+
Sbjct: 89 RAWSEHRRHFPNCFFVL 105
Score = 99.6 bits (248), Expect = 1e-25
Identities = 32/71 (45%), Positives = 39/71 (54%)
Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
E RL +F NWP +TP LA G YY GD+V+C C + WE GD A SE
Sbjct: 34 MYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGDRAWSE 93
Query: 284 HKRQSPNCPFL 294
H+R PNC F+
Sbjct: 94 HRRHFPNCFFV 104
Score = 93.8 bits (233), Expect = 1e-23
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M E +RL++FQ+WP + ++ + +A AG +YTG +VQCFACG K+ NW D ++
Sbjct: 34 MYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGDRAWSE 93
Query: 61 HRAKDPGCPFVKN 73
HR P C FV
Sbjct: 94 HRRHFPNCFFVLG 106
Score = 93.8 bits (233), Expect = 1e-23
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
M E +RL++FQ+WP + ++ + +A AG +YTG +VQCFACG K+ NW D ++
Sbjct: 34 MYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGDRAWSE 93
Query: 197 HRAKDPGCPFVKN 209
HR P C FV
Sbjct: 94 HRRHFPNCFFVLG 106
Score = 49.5 bits (118), Expect = 4e-08
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
E RL +F NWP +TP LA G YY GD+
Sbjct: 34 MYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQ 71
>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 110 bits (276), Expect = 8e-30
Identities = 40/82 (48%), Positives = 59/82 (71%)
Query: 393 LSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSE 452
+ T +R+ TF WP P+ P+ LA AGF+Y G+ D V+CF CDGGLR W + D+PW E
Sbjct: 1 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 60
Query: 453 HARWFPECHFVMLVKGEQFIED 474
HA+WFP C F++ +KG++F+++
Sbjct: 61 HAKWFPRCEFLIRMKGQEFVDE 82
Score = 98.8 bits (246), Expect = 8e-26
Identities = 30/68 (44%), Positives = 37/68 (54%)
Query: 227 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESEHKR 286
+ R+ TF WP S V PE LA GFYY+ + D VKC C + WE GD+ EH +
Sbjct: 4 HAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAK 63
Query: 287 QSPNCPFL 294
P C FL
Sbjct: 64 WFPRCEFL 71
Score = 94.5 bits (235), Expect = 3e-24
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
M +R+RTF WPS+ PV +++A AGF+Y G +V+CF C + W D +
Sbjct: 1 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 60
Query: 61 HRAKDPGCPFVKN 73
H P C F+
Sbjct: 61 HAKWFPRCEFLIR 73
Score = 94.5 bits (235), Expect = 3e-24
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
M +R+RTF WPS+ PV +++A AGF+Y G +V+CF C + W D +
Sbjct: 1 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVE 60
Query: 197 HRAKDPGCPFVKN 209
H P C F+
Sbjct: 61 HAKWFPRCEFLIR 73
Score = 51.0 bits (122), Expect = 6e-09
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 341 ESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
+ R+ TF WP S V PE LA GFYY+ + D
Sbjct: 4 HAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDD 38
>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 137
Score = 110 bits (275), Expect = 4e-29
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 8/128 (6%)
Query: 388 PKHPNLSTLDSRVLTFTTWP--RDSPLGPQSLAVAGFFY---DGQGDWVRCFHCDGGLRK 442
P D R+ TF WP P+ +A AGF + + + D +CF C L
Sbjct: 3 PPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEG 62
Query: 443 WTAMDEPWSEHARWFPECHFVMLVKGEQFI--EDTIKANPPITDEVF-FTPKFFVKSLEE 499
W D+P EH + C F+ + K + + + +K + K EE
Sbjct: 63 WEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDRERAKNKIAKETNNKKKEFEE 122
Query: 500 EVRRLREA 507
+++R A
Sbjct: 123 TAKKVRRA 130
Score = 93.2 bits (231), Expect = 4e-23
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 224 YKLESGRLATFNNWPVS--FIVTPEALAKTGFYYL---KQGDKVKCAYCSVIIGRWEQGD 278
L+ R++TF NWP TPE +A+ GF + + D +C +C + WE D
Sbjct: 8 PFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDD 67
Query: 279 NAESEHKRQSPNCPFL 294
+ EHK+ S C FL
Sbjct: 68 DPIEEHKKHSSGCAFL 83
Score = 85.1 bits (210), Expect = 3e-20
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 1 MNFERSRLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYND 55
+ R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D
Sbjct: 8 PFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDD 67
Query: 56 SVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLAT 97
+ +H+ GC F+ + E KL+ R
Sbjct: 68 DPIEEHKKHSSGCAFLSV--KKQFEELTLGEFLKLDRERAKN 107
Score = 85.1 bits (210), Expect = 3e-20
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 137 MNFERSRLRTFQSWP--SNSPVSSKRIAKAGFFYTGHQHE---VQCFACGVKISNWTYND 191
+ R+ TF++WP + +R+A+AGF + ++E QCF C ++ W +D
Sbjct: 8 PFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDD 67
Query: 192 SVMAKHRAKDPGCPFVKNPEASGNVSIENEEVYKLESGRLAT 233
+ +H+ GC F+ + E KL+ R
Sbjct: 68 DPIEEHKKHSSGCAFLSV--KKQFEELTLGEFLKLDRERAKN 107
>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 97
Score = 101 bits (253), Expect = 1e-26
Identities = 42/97 (43%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 224 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKVKCAYCSVIIGRWEQGDNAESE 283
E RL TF +WP+ + + LA+TG Y+ GDKVKC +C V IG WEQ D E
Sbjct: 3 LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 61
Query: 284 HKRQSPNCPFLARDNQATQANMINLRALDAKDPGCPF 320
H+R SPNCP L + T IN ALD P +
Sbjct: 62 HQRWSPNCPLL--RRRTTNNVPINAEALDRILPPISY 96
Score = 96.1 bits (239), Expect = 1e-24
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 392 NLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWS 451
+L+ ++R+ TFT WP D L + LA G ++ GD V+CF C + W D+P
Sbjct: 2 DLNREETRLKTFTDWPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVP 60
Query: 452 EHARWFPECHFV 463
EH RW P C +
Sbjct: 61 EHQRWSPNCPLL 72
Score = 93.4 bits (232), Expect = 1e-23
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 1 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 60
+N E +RL+TF WP + + +++A+ G ++T +V+CF CGV+I +W D + +
Sbjct: 3 LNREETRLKTFTDWPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 61
Query: 61 HRAKDPGCPFVKNPEASGNVSIENEEV 87
H+ P CP ++ + NV I E +
Sbjct: 62 HQRWSPNCPLLRR-RTTNNVPINAEAL 87
Score = 93.4 bits (232), Expect = 1e-23
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 137 MNFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFACGVKISNWTYNDSVMAK 196
+N E +RL+TF WP + + +++A+ G ++T +V+CF CGV+I +W D + +
Sbjct: 3 LNREETRLKTFTDWPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPE 61
Query: 197 HRAKDPGCPFVKNPEASGNVSIENEEV 223
H+ P CP ++ + NV I E +
Sbjct: 62 HQRWSPNCPLLRR-RTTNNVPINAEAL 87
Score = 49.1 bits (117), Expect = 3e-08
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 338 YKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDK 375
E RL TF +WP+ + + LA+TG Y+ GDK
Sbjct: 3 LNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDK 39
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 51.5 bits (123), Expect = 3e-09
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 489 TPKFFVKSLEEEVRRLRE----ARLCKICMDKEVGVVLLPCGHL--VTCVL--CASSLPR 540
TP+ +K +E+ E +LCKIC + + V + PCGHL +C+ S
Sbjct: 1 TPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG 60
Query: 541 CPVCRENIKATVRTFL 556
CP CR IK T +
Sbjct: 61 CPFCRCEIKGTEPIVV 76
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 47.6 bits (113), Expect = 4e-08
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 498 EEEVRRLREARLCKICMDKEVGVVLLPCGHLVTCVLCASSLPRCPVCRENIKAT 551
EEE + LR C+ C + LLPC H + +S +CP+C+
Sbjct: 1 EEEFQFLR----CQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPLG 50
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 43.5 bits (102), Expect = 4e-06
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 494 VKSLEEEVRRLREARLCKICMDKEVGVVLLPCGHL------VTCVLCASSLPRCPVCREN 547
V+ ++ + +++ C IC++ V C H+ + + +CP+C+ +
Sbjct: 8 VEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67
Query: 548 IK 549
I
Sbjct: 68 IT 69
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 40.7 bits (95), Expect = 2e-05
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 510 CKICMDK-EVGVVLLPCGHL--VTCVL-CASSLPRCPVCRENIKATVRTFLS 557
C IC++ + LPC H C+ P CP+C+ +++ V T S
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIES 59
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 40.3 bits (94), Expect = 4e-05
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 504 LREARLCKICMDKEVGVVLLPCGHLVTCVLC-----ASSLPRCPVCRENIKAT-----VR 553
++ C+IC V C H + C +C CP CR T V+
Sbjct: 20 FVKSISCQICEHILADPVETSCKH-LFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVK 78
Query: 554 TFLS 557
+FL+
Sbjct: 79 SFLN 82
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 35.5 bits (81), Expect = 0.002
Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 495 KSLEEEVRRLREARLCKICMDK-EVGVVLLPCGHLVTCVLCASSL--PRCPVCRENIKAT 551
+ RL + C C + V L C H + C C S CPVC
Sbjct: 10 AHSRAALDRLEKLLRCSRCTNILREPVCLGGCEH-IFCSNCVSDCIGTGCPVCYTPAWIQ 68
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 32.4 bits (73), Expect = 0.012
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 8/48 (16%)
Query: 510 CKICMDK----EVGVVLLPCGHLVTCVLCASSL----PRCPVCRENIK 549
C +CM+ ++ CG+ + CP CR+
Sbjct: 3 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 50
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 32.1 bits (73), Expect = 0.013
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 9/47 (19%)
Query: 510 CKICMD----KEVGVVLLPCGHLVTCVLCASSL----PRCPVCRENI 548
C +C+ E L CGH C CP+CR +
Sbjct: 8 CAVCLAELEDGEEARFLPRCGH-GFHAECVDMWLGSHSTCPLCRLTV 53
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 29.0 bits (64), Expect = 0.24
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 11/54 (20%)
Query: 506 EARLCKICMD-----KEVGVVLLPCGHLVTCVLCASSL-----PRCPVCRENIK 549
+ + C C + +++ CGH C C L CP C ++
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGH-TLCESCVDLLFVRGAGNCPECGTPLR 54
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain
{Penicillium minioluteum [TaxId: 28574]}
Length = 373
Score = 31.2 bits (70), Expect = 0.31
Identities = 17/149 (11%), Positives = 38/149 (25%), Gaps = 16/149 (10%)
Query: 79 NVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKKYFL-ISFRSITM 137
V+I+ + + + + + P + I A D + + ++ ++
Sbjct: 231 GVTIDT--LNVIHTRYIKSETVVPSAIIGASPFYASGM-----SPDSRKSISMTVSNVVC 283
Query: 138 NFERSRLRTFQSWPSNSPVSSKRIAKAGFFYTGHQHEVQCFAC-------GVKISNWTYN 190
L + K +A T + G+ IS WT
Sbjct: 284 EGLCPSLFRITPLQNYKNFVVKNVAFPDGLQTNSIGTGESIIPAASGLTMGLAISAWTIG 343
Query: 191 DSVMAKHRAKDPGCPFVK-NPEASGNVSI 218
+ + + G I
Sbjct: 344 GQKVTMENFQANSLGQFNIDGSYWGEWQI 372
>d1jh3a_ d.66.1.4 (A:) Tyrosyl-tRNA synthetase (TyrRS), C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 28.6 bits (64), Expect = 0.64
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 13/57 (22%)
Query: 76 ASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLKQGDKKYFLISF 132
+G + + E + + I+T E + F +++G KKY+LI +
Sbjct: 55 QNGAIYVNGERLQDVG-------------AILTAEHRLEGRFTVIRRGKKKYYLIRY 98
>d2pt0a1 c.45.1.4 (A:34-346) Myo-inositol hexaphosphate
phosphohydrolase (phytase) PhyA {Selenomonas ruminantium
[TaxId: 971]}
Length = 313
Score = 29.6 bits (66), Expect = 0.89
Identities = 22/137 (16%), Positives = 37/137 (27%), Gaps = 23/137 (16%)
Query: 317 GCPFV-KNPEASGNVSIENEEVYKLESGRLATFNNWPVSFI-----VTPEALAKTGFYYL 370
G P N+ E E RL + V PE +
Sbjct: 110 GIPVSWYGERDWANLGKSQHEALADERHRLHAALHKTVYIAPLGKHKLPEGGEVRRVQKV 169
Query: 371 KQGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDW 430
+ + G++ R+ ++ + F + R P W
Sbjct: 170 QTEQEVAEAAGMRYFRIAATDHVWPTPENIDRFLAFYRTLPQDA---------------W 214
Query: 431 VRCFHCDGGL-RKWTAM 446
+ FHC+ G+ R M
Sbjct: 215 L-HFHCEAGVGRTTAFM 230
>d1y7ba2 b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal domain
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 321
Score = 28.8 bits (63), Expect = 1.6
Identities = 29/243 (11%), Positives = 57/243 (23%), Gaps = 16/243 (6%)
Query: 231 LATFNNWPVSFIVTPEALAKTGFYYL------KQGDKVKCAYCSVIIGRWEQGDNAESEH 284
L N I P+ G ++L K + + G ++
Sbjct: 59 LDMKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPIT 118
Query: 285 KRQSPNCPFLARDNQATQANMINLRALDAKDPGCPFVKNPEASGNVSIENEEVYKLESGR 344
S L DN + L + + +++ KL
Sbjct: 119 LNGSGFDASLFHDNDGK-------KYLVNMYWDQRTYNHNFYGIVLQEYSDKEKKLIGKA 171
Query: 345 LATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTFT 404
+ + + P +YYL + + K+ +
Sbjct: 172 KIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLL 231
Query: 405 TWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFVM 464
T D Q A + +W R ++P E + P
Sbjct: 232 TSWHDPRNSLQKCGHASLVHTHTDEWYLAHLVG---RPLPVGNQPVLEQRGYCPLGRETS 288
Query: 465 LVK 467
+ +
Sbjct: 289 IQR 291
>d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli
[TaxId: 562]}
Length = 113
Score = 26.9 bits (59), Expect = 2.9
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 239 VSFIVTPEALAKTGFYYLKQGDKV 262
+ PE L +T K G +V
Sbjct: 64 FCVHLIPETLERTTLGKKKLGARV 87
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 25.6 bits (55), Expect = 3.4
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 10/54 (18%)
Query: 506 EARLCKICMD-----KEVGVVLLPCGHLV--TCV---LCASSLPRCPVCRENIK 549
+ +C IC + + V +C+ L S C +C
Sbjct: 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
[TaxId: 274]}
Length = 1119
Score = 28.2 bits (62), Expect = 3.6
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 4/59 (6%)
Query: 455 RWFPECHFVMLVKGEQFIEDTIKANPPITDEVFFTPKFFVK----SLEEEVRRLREARL 509
R + + I+ + PI +E + L E E R
Sbjct: 27 RRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLGEPPFPQDECRE 85
>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 92
Score = 26.1 bits (57), Expect = 4.6
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 232 ATFNNWPVSFIVTPEALAKTGFYYLKQGDKV 262
F+ + + + PE+L T K GD V
Sbjct: 52 TDFDRYHFTVGIAPESLRLTNLGQCKAGDPV 82
>d2exha2 b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal domain
{Geobacillus stearothermophilus [TaxId: 1422]}
Length = 322
Score = 27.2 bits (59), Expect = 4.8
Identities = 32/244 (13%), Positives = 56/244 (22%), Gaps = 16/244 (6%)
Query: 230 RLATFNNWPVSFIVTPEALAKTGFYYL------KQGDKVKCAYCSVIIGRWEQGDNAESE 283
+L N + P G ++L + K + ++ G ++
Sbjct: 59 QLNMIGNPDSGGVWAPHLSYSDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPI 118
Query: 284 HKRQSPNCPFLARDNQATQANMINLRALDAKDPGCPFVKNPEASGNVSIENEEVYKLESG 343
+ S P L D + L +P + + E KL
Sbjct: 119 YLNSSGFDPSLFHDEDGR-------KYLVNMYWDHRVDHHPFYGIVLQEYSVEQKKLVGE 171
Query: 344 RLATFNNWPVSFIVTPEALAKTGFYYLKQGDKDMRDLGVQNHRVPKHPNLSTLDSRVLTF 403
F + P G+YYL + R
Sbjct: 172 PKIIFKGTDLRITEGPHLYKINGYYYLLTAEGGTRYNHAATIARSTSLYGPYEVHPDNPL 231
Query: 404 TTWPRDSPLGPQSLAVAGFFYDGQGDWVRCFHCDGGLRKWTAMDEPWSEHARWFPECHFV 463
T Q A + +W R +P EH + P
Sbjct: 232 LTSWPYPRNPLQKAGHASIVHTHTDEWFLVHLTG---RPLPREGQPLLEHRGYCPLGRET 288
Query: 464 MLVK 467
+ +
Sbjct: 289 AIQR 292
>d1alya_ b.22.1.1 (A:) Extracellular domain of CD40 ligand {Human
(Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 26.1 bits (57), Expect = 7.2
Identities = 14/114 (12%), Positives = 31/114 (27%), Gaps = 12/114 (10%)
Query: 323 NPEASGNVSIENEEVYKLESGRLATFNNWPVSFIVTPEALAKTGFYYLK-----QGDKDM 377
+ + + + + Y + + + N + G YY+ +++
Sbjct: 16 SSKTTSVLQWAEKGYYTMSNNLVTLENG---KQLTVKR----QGLYYIYAQVTFCSNREA 68
Query: 378 RDLGVQNHRVPKHPNLSTLDSRVLTFTTWPRDSPLGPQSLAVAGFFYDGQGDWV 431
+ + T P G QS+ + G F G V
Sbjct: 69 SSQAPFIASLCLKSPGRFERILLRAANTHSSAKPCGQQSIHLGGVFELQPGASV 122
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.433
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,202,762
Number of extensions: 108734
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 67
Length of query: 557
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 467
Effective length of database: 1,171,896
Effective search space: 547275432
Effective search space used: 547275432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)