BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2748
(690 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 156/354 (44%), Gaps = 30/354 (8%)
Query: 20 GSSDPLQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQ-YVFKKIFN 78
GSS+ ++V R RPM+ + V D V+L NP+ ++ + + F +++
Sbjct: 18 GSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYD 77
Query: 79 VDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSD---GGIMMRCID 135
+ Q ++Y E PLV +++ NG + YG TG+GKTYTM G D G++ D
Sbjct: 78 WNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFD 137
Query: 136 VLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDP 195
+F I R Q ++ R L + Q ++ LL + EL +R P G+
Sbjct: 138 HIFTHISRSQNQQYLVRASYLEIY--QEEIRDLLSKDQTKRLELKER-PDTGVYVKDLSS 194
Query: 196 EMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIRED 255
+ +K+ V ++ N SV + + +++ H + I + + D
Sbjct: 195 FVTKSVKEIEHVMNVGNQN-RSVGATNMNEHSSRSHAIFV---------ITIECSEVGLD 244
Query: 256 GDKNMFVHGVNEIEVTTPD---------EAFQSIGNINNSLMTLRTCLEILRENQLQGTN 306
G+ ++ V +N +++ + E + IN SL L + L + G +
Sbjct: 245 GENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISAL----VDGKS 300
Query: 307 KIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQ 360
P+R+SKLT L + G+ M+ V P + +E L +++A ++ ++
Sbjct: 301 THIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIK 354
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 159/358 (44%), Gaps = 60/358 (16%)
Query: 24 PLQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQ 83
+ V R+RP+ NS +ES T Q+ +N Y + + F ++F+ +
Sbjct: 5 AVAVCVRVRPL-NSREESL-----GETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETT 58
Query: 84 KQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGR 143
K VY E+A P++ + I NG + YG T SGKTYTM G+ G++ R I +F I +
Sbjct: 59 KNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKK 118
Query: 144 YQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRI-- 201
+ R+ R + + ++ D+L Q +M+P I
Sbjct: 119 FPDREFLLRVSYMEIYN-ETITDLLCGTQ-----------------------KMKPLIIR 154
Query: 202 KDASK---VEDIEEDNVYS--VFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDG 256
+D ++ V D+ E+ VY+ + + +I S H M + ++R R+I E
Sbjct: 155 EDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQ-RSSRSHTIFRMILESR 213
Query: 257 DK--------NMFVHGVNEIEVTTPDEAFQSIG---------NINNSLMTLRTCLEILRE 299
+K ++ V +N +++ + A Q+ NIN SL L ++ L +
Sbjct: 214 EKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSD 273
Query: 300 NQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQ 357
Q+ G +R+SKLT + ++ G+ R+I + P +DE L ++FA ++
Sbjct: 274 GQVGG---FINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAK 326
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 159/356 (44%), Gaps = 33/356 (9%)
Query: 23 DPLQVFCRIRP-MDNSYDESCISVV--SDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNV 79
D ++VFCRIRP +++ + C + ++TV+L D + + F ++F+
Sbjct: 59 DNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQ--IFSFDQVFHP 116
Query: 80 DVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFN 139
Q ++ E+ PL+ + + N + YG TGSGKTYTM+G G++ R +D+LF+
Sbjct: 117 LSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFD 175
Query: 140 SIGRYQPRKRTFRPDKLNGFEVQSQV--DILLQEQAEMNGELTKRTPGPGLKRNKSDPEM 197
SI Y+ + K E+ ++V D+L EQ +M + K NK+D
Sbjct: 176 SIRGYRNLGWEYEI-KATFLEIYNEVLYDLLSNEQKDMEIRMA--------KNNKND--- 223
Query: 198 EPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGD 257
I ++ E+ D + + + N + + + + + R
Sbjct: 224 ---IYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEK 280
Query: 258 KNMFVHGVNEIEVTTPDEAFQS-----IGNINNSLMTLRTCLEILRENQLQGTNKIPPFR 312
+ + V +N +++ + S NIN SL L + L LQ + I P+R
Sbjct: 281 QEISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILAL----LQKQDHI-PYR 335
Query: 313 ESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQISKALPSR 368
SKLTHL G+ M + V+P + + E++ ++FA +++KA +R
Sbjct: 336 NSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 391
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 158/354 (44%), Gaps = 33/354 (9%)
Query: 25 LQVFCRIRP-MDNSYDESCISVV--SDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDV 81
++VFCRIRP +++ + C + ++TV+L D + + F ++F+
Sbjct: 69 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQ--IFSFDQVFHPLS 126
Query: 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSI 141
Q ++ E+ PL+ + + N + YG TGSGKTYTM+G G++ R +D+LF+SI
Sbjct: 127 SQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 185
Query: 142 GRYQPRKRTFRPDKLNGFEVQSQV--DILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEP 199
Y+ + K E+ ++V D+L EQ +M + K NK+D
Sbjct: 186 RGYRNLGWEYEI-KATFLEIYNEVLYDLLSNEQKDMEIRMA--------KNNKND----- 231
Query: 200 RIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKN 259
I ++ E+ D + + + N + + + + + R +
Sbjct: 232 -IYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE 290
Query: 260 MFVHGVNEIEVTTPDEAFQSI-----GNINNSLMTLRTCLEILRENQLQGTNKIPPFRES 314
+ V +N +++ + S NIN SL L + L LQ + IP +R S
Sbjct: 291 ISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILAL----LQKQDHIP-YRNS 345
Query: 315 KLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQISKALPSR 368
KLTHL G+ M + V+P + + E++ ++FA +++KA +R
Sbjct: 346 KLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 399
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 156/355 (43%), Gaps = 38/355 (10%)
Query: 20 GSSDPLQVFCRIRPM---DNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKI 76
GS ++V R+RP+ D E+ +V D D K V + K+
Sbjct: 1 GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDA-----DDDSIIHLLHKGKPVSFELDKV 55
Query: 77 FNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDV 136
F+ Q+ V+ EV LV + I N + YG TG+GKTYTM GT + GI R + +
Sbjct: 56 FSPQASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQL 114
Query: 137 LFNSIGRYQPRKRTFRPD-KLNGFEVQSQV--DILLQE-QAEMNGELTKRTPG----PGL 188
LF+ + Q + + ++ E+ ++V D+L +E Q ++ L G PGL
Sbjct: 115 LFSEV---QEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGL 171
Query: 189 KRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLN 248
+ + D +KV + N + F + E +++ H LL G + L
Sbjct: 172 TEFQVQS-----VDDINKVFEFGHTNRTTEFTNLNE-HSSRSHALLIVTVRGVDCSTGL- 224
Query: 249 NRLIREDGDKNMF-VHGVNEIEVTTPDEA-FQSIGNINNSLMTLRTCLEILRENQLQGTN 306
R G N+ + G + + + + + +IN SL L + LR Q
Sbjct: 225 ----RTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGH--- 277
Query: 307 KIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQI 361
PFR SKLT+L + +GD M+V V+P ++ E L +KFAE + V++
Sbjct: 278 --VPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 158/354 (44%), Gaps = 33/354 (9%)
Query: 25 LQVFCRIRP-MDNSYDESCISVV--SDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDV 81
++VFCRIRP +++ + C + ++TV+L D + + F ++F+
Sbjct: 55 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQ--IFSFDQVFHPLS 112
Query: 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSI 141
Q ++ E+ PL+ + + N + YG TGSGKTYTM+G G++ R +D+LF+SI
Sbjct: 113 SQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 171
Query: 142 GRYQPRKRTFRPDKLNGFEVQSQV--DILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEP 199
Y+ + K E+ ++V D+L EQ +M + K NK+D
Sbjct: 172 RGYRNLGWEYEI-KATFLEIYNEVLYDLLSNEQKDMEIRMA--------KNNKND----- 217
Query: 200 RIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKN 259
I ++ E+ D + + + N + + + + + R +
Sbjct: 218 -IYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE 276
Query: 260 MFVHGVNEIEVTTPDEAFQS-----IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRES 314
+ V +N +++ + S NIN SL L + L LQ + I P+R S
Sbjct: 277 ISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILAL----LQKQDHI-PYRNS 331
Query: 315 KLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQISKALPSR 368
KLTHL G+ M + V+P + + E++ ++FA +++KA +R
Sbjct: 332 KLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 385
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 157/354 (44%), Gaps = 33/354 (9%)
Query: 25 LQVFCRIRP-MDNSYDESCISVV--SDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDV 81
++VFCRIRP +++ + C + ++TV+L D + + F ++F+
Sbjct: 58 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQ--IFSFDQVFHPLS 115
Query: 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSI 141
Q ++ E+ PL+ + + N + YG TGSGKTYTM+G G++ R +D+LF+SI
Sbjct: 116 SQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 174
Query: 142 GRYQPRKRTFRPDKLNGFEVQSQV--DILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEP 199
Y+ + K E+ ++V D+L EQ +M + K NK+D
Sbjct: 175 RGYRNLGWEYEI-KATFLEIYNEVLYDLLSNEQKDMEIRMA--------KNNKND----- 220
Query: 200 RIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKN 259
I ++ E+ D + + + N + + + + + R +
Sbjct: 221 -IYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE 279
Query: 260 MFVHGVNEIEVTTPDEAFQS-----IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRES 314
+ V +N +++ + S NI SL L + L LQ + I P+R S
Sbjct: 280 ISVGSINLVDLAGSESPKTSTRMTETKNIKRSLSELTNVILAL----LQKQDHI-PYRNS 334
Query: 315 KLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQISKALPSR 368
KLTHL G+ M + V+P + + E++ ++FA +++KA +R
Sbjct: 335 KLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 388
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 155/349 (44%), Gaps = 33/349 (9%)
Query: 25 LQVFCRIRP-MDNSYDESCISVV--SDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDV 81
++VFCRIRP +++ + C + ++TV+L D + + F ++F+
Sbjct: 58 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQ--IFSFDQVFHPLS 115
Query: 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSI 141
Q ++ E+ PL+ + + N + YG +GSGKTYTM+G G++ R +D+LF+SI
Sbjct: 116 SQSDIF-EMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSI 174
Query: 142 GRYQPRKRTFRPDKLNGFEVQSQV--DILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEP 199
Y+ + K E+ ++V D+L EQ +M + K NK+D
Sbjct: 175 RGYRNLGWEYEI-KATFLEIYNEVLYDLLSNEQKDMEIRMA--------KNNKND----- 220
Query: 200 RIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKN 259
I ++ E+ D + + + N + + + + + R +
Sbjct: 221 -IYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE 279
Query: 260 MFVHGVNEIEVTTPDEAFQS-----IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRES 314
+ V +N +++ + S NIN SL L + L LQ + I P+R S
Sbjct: 280 ISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILAL----LQKQDHI-PYRNS 334
Query: 315 KLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQISK 363
KLTHL G+ M + V+P + + E++ ++FA +++K
Sbjct: 335 KLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTK 383
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 169/369 (45%), Gaps = 56/369 (15%)
Query: 21 SSDPLQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEV--QYVFKKIFN 78
S+ +QV+ R+RP+++ E CI S V + P R+ + ++ ++ F + F
Sbjct: 21 SNQNIQVYVRVRPLNSR--ERCIR--SAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFG 76
Query: 79 VDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGT-----------NSDG 127
+ Q VYS V PL+ +++ N + YG TG+GKT+TM G +SD
Sbjct: 77 PESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDI 136
Query: 128 GIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQE---QAEMNGELTKRTP 184
GI+ R + LF+ + R + T R L + + D+L + + + + TK+
Sbjct: 137 GIIPRALSHLFDEL-RMMEVEYTMRISYLELYN-EELCDLLSTDDTTKIRIFDDSTKKGS 194
Query: 185 G--PGLK----RNKSD-----PEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDL 233
GL+ +K D + + R K A+ + + + ++VF + I N +
Sbjct: 195 VIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEG- 253
Query: 234 LEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQSIGNINNSLMTLRTC 293
EDM + +LN L+ G +N+ G NE + + NIN SL+TL
Sbjct: 254 -EDMLKIG----KLN--LVDLAGSENVSKAG-NEKGIRVRETV-----NINQSLLTLGRV 300
Query: 294 LEILRENQLQGTNKIP--PFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMK 351
+ L ++ P P+RESKLT L + G +I ++P +D +E L+ ++
Sbjct: 301 ITAL-------VDRAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLE 353
Query: 352 FAEMSQEVQ 360
+A ++ +Q
Sbjct: 354 YAHRAKNIQ 362
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 86/376 (22%), Positives = 152/376 (40%), Gaps = 84/376 (22%)
Query: 21 SSDPLQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQ--YVFKKIFN 78
S++ ++V R RP + ES V PD ++KE Q + F ++F+
Sbjct: 4 SANSIKVVARFRPQNRVEIESG----GQPIVTFQGPDTCT---VDSKEAQGSFTFDRVFD 56
Query: 79 VDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG----GIMMRCI 134
+ Q ++ P V ++++ NG + YG TG+GK+YTM GT+ D G++ R +
Sbjct: 57 MSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIV 116
Query: 135 DVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSD 194
+ +F SI L A N E T R + +
Sbjct: 117 EQIFTSI---------------------------LSSAA--NIEYTVRV-------SYME 140
Query: 195 PEMEPRIKDASKVED----IEEDNVYSVFV-SYIEIYNNSVHDLLEDMPEGNNARIQLNN 249
ME RI+D ++ + E+ V+V +EIY +SV ++ E M G NAR
Sbjct: 141 IYME-RIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAAT 199
Query: 250 RLIREDG-DKNMFVHGVNEIEVTT------------------------PDEAFQSIGNIN 284
+ +E ++FV + + V T + + IN
Sbjct: 200 NMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKIN 259
Query: 285 NSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYD 344
SL L + L + G + P+R+SKLT + + G+ +I+ +P +
Sbjct: 260 KSLSALGMVINALTD----GKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDA 315
Query: 345 ENLAVMKFAEMSQEVQ 360
E L+ ++F ++ ++
Sbjct: 316 ETLSTLRFGMRAKSIK 331
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/354 (22%), Positives = 150/354 (42%), Gaps = 29/354 (8%)
Query: 25 LQVFCRIRPM---DNSYDESCISVVSDTTVQLTPPDGS--------NPRYFNNKEVQYVF 73
++V RIRPM + C+ V V L P + + P+ F +
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSM 62
Query: 74 -KKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMR 132
+ + GQ V+ + ++ N N + YG TGSGK+YTM GT G++ R
Sbjct: 63 DESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPR 122
Query: 133 CIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQV--DILLQEQAEMNGELTKRTP-GP--- 186
LF + + +++F+ + ++ E+ ++ D+L + + ++ + + GP
Sbjct: 123 LCSGLFERTQKEENEEQSFKVE-VSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVD 181
Query: 187 GLKRNK--SDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNAR 244
GL + S ++E + + +K + N+ ++ ++ L D+ G +
Sbjct: 182 GLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGE 241
Query: 245 IQLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQSIGNINNSLMTLRTCLEILRENQL-Q 303
L+ G + G + + NIN SL TL + L + +
Sbjct: 242 KVGKLSLVDLAGSERATKTGA-------AGDRLKEGSNINKSLTTLGLVISALADQSAGK 294
Query: 304 GTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQ 357
NK P+R+S LT L K G+ M+ V+P ++YDE L+ +++A+ ++
Sbjct: 295 NKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/380 (23%), Positives = 154/380 (40%), Gaps = 74/380 (19%)
Query: 25 LQVFCRIRPMDN---SYDESCISVVSDTTVQLTPPD--GSNPRYFNNKEVQYVFKKIFNV 79
++V R+RP ++ S D CI +S +T + P P+ F+ + ++
Sbjct: 22 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 81
Query: 80 D-VGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG--GIMMRCIDV 136
+ QKQVY ++ ++ + N + YG TG+GK+YTM G GI+ + +
Sbjct: 82 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 141
Query: 137 LFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPE 196
LF+ I ++ EV S ++I + ++ K G R + P
Sbjct: 142 LFSRINDTTNDNMSY------SVEV-SYMEIYCERVRDLLNPKNK-----GNLRVREHPL 189
Query: 197 MEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRL----- 251
+ P ++D SK+ SY N + DL M GN AR +
Sbjct: 190 LGPYVEDLSKL----------AVTSY-----NDIQDL---MDSGNKARTVAATNMNETSS 231
Query: 252 ------------IREDGDKNMFVHGVNEIEVT--TPDEAFQSIG----------NINNSL 287
R D + N+ V++I + E S G NIN SL
Sbjct: 232 RSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSL 291
Query: 288 MTLRTCLEILRE-------NQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
TL + L E N+ + P+R+S LT L + G+ M+ ++P
Sbjct: 292 TTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPAD 351
Query: 341 EDYDENLAVMKFAEMSQEVQ 360
+YDE L+ +++A+ +++++
Sbjct: 352 INYDETLSTLRYADRAKQIR 371
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/380 (23%), Positives = 154/380 (40%), Gaps = 74/380 (19%)
Query: 25 LQVFCRIRPMDN---SYDESCISVVSDTTVQLTPPD--GSNPRYFNNKEVQYVFKKIFNV 79
++V R+RP ++ S D CI +S +T + P P+ F+ + ++
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 65
Query: 80 D-VGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG--GIMMRCIDV 136
+ QKQVY ++ ++ + N + YG TG+GK+YTM G GI+ + +
Sbjct: 66 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 125
Query: 137 LFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPE 196
LF+ I ++ EV S ++I + ++ K G R + P
Sbjct: 126 LFSRINDTTNDNMSY------SVEV-SYMEIYCERVRDLLNPKNK-----GNLRVREHPL 173
Query: 197 MEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRL----- 251
+ P ++D SK+ SY N + DL M GN AR +
Sbjct: 174 LGPYVEDLSKL----------AVTSY-----NDIQDL---MDSGNKARTVAATNMNETSS 215
Query: 252 ------------IREDGDKNMFVHGVNEIEVT--TPDEAFQSIG----------NINNSL 287
R D + N+ V++I + E S G NIN SL
Sbjct: 216 RSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSL 275
Query: 288 MTLRTCLEILRE-------NQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
TL + L E N+ + P+R+S LT L + G+ M+ ++P
Sbjct: 276 TTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPAD 335
Query: 341 EDYDENLAVMKFAEMSQEVQ 360
+YDE L+ +++A+ +++++
Sbjct: 336 INYDETLSTLRYADRAKQIR 355
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/380 (23%), Positives = 154/380 (40%), Gaps = 74/380 (19%)
Query: 25 LQVFCRIRPMDN---SYDESCISVVSDTTVQLTPPD--GSNPRYFNNKEVQYVFKKIFNV 79
++V R+RP ++ S D CI +S +T + P P+ F+ + ++
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 65
Query: 80 D-VGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG--GIMMRCIDV 136
+ QKQVY ++ ++ + N + YG TG+GK+YTM G GI+ + +
Sbjct: 66 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 125
Query: 137 LFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPE 196
LF+ I ++ EV S ++I + ++ K G R + P
Sbjct: 126 LFSRINDTTNDNMSY------SVEV-SYMEIYCERVRDLLNPKNK-----GNLRVREHPL 173
Query: 197 MEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRL----- 251
+ P ++D SK+ SY N + DL M GN AR +
Sbjct: 174 LGPYVEDLSKL----------AVTSY-----NDIQDL---MDSGNKARTVAATNMNETSS 215
Query: 252 ------------IREDGDKNMFVHGVNEIEVT--TPDEAFQSIG----------NINNSL 287
R D + N+ V++I + E S G NIN SL
Sbjct: 216 RSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSL 275
Query: 288 MTLRTCLEILRE-------NQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
TL + L E N+ + P+R+S LT L + G+ M+ ++P
Sbjct: 276 TTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPAD 335
Query: 341 EDYDENLAVMKFAEMSQEVQ 360
+YDE L+ +++A+ +++++
Sbjct: 336 INYDETLSTLRYADRAKQIR 355
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 86/377 (22%), Positives = 158/377 (41%), Gaps = 68/377 (18%)
Query: 25 LQVFCRIRPMDN---SYDESCISVVSDTTVQLTPPD--GSNPRYFNNKEVQYVFKKIFNV 79
++V R+RP ++ S D CI +S +T + P P+ F+ + ++
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 65
Query: 80 D-VGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG--GIMMRCIDV 136
+ QKQVY ++ ++ + N + YG TG+GK+YTM G GI+ + +
Sbjct: 66 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 125
Query: 137 LFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPE 196
LF+ I ++ EV S ++I + ++ K G R + P
Sbjct: 126 LFSRINDTTNDNMSY------SVEV-SYMEIYCERVRDLLNPKNK-----GNLRVREHPL 173
Query: 197 MEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLE-----------DMPEGNNARI 245
+ P ++D SK+ SY N + DL++ +M E ++
Sbjct: 174 LGPYVEDLSKL----------AVTSY-----NDIQDLMDSGNKPRTVAATNMNETSSRSH 218
Query: 246 QLNNRLI---REDGDKNMFVHGVNEIEVT--TPDEAFQSIG----------NINNSLMTL 290
+ N + R D + N+ V++I + E S G NIN SL TL
Sbjct: 219 AVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTL 278
Query: 291 RTCLEILRE-------NQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDY 343
+ L E N+ + P+R+S LT L + G+ M+ ++P +Y
Sbjct: 279 GKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINY 338
Query: 344 DENLAVMKFAEMSQEVQ 360
DE L+ +++A+ +++++
Sbjct: 339 DETLSTLRYADRAKQIR 355
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 39/139 (28%)
Query: 21 SSDPLQVFCRIRPMD---------------NSYDESCISVVSDTTVQLTPPDGSNPRYFN 65
+ D ++V CR RP++ N+ +E+CIS+
Sbjct: 9 AEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKV---------------- 52
Query: 66 NKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNS 125
Y+F K+F + Q++VY+E A +V +++ NG + YG T SGKT+TM G
Sbjct: 53 -----YLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIG 107
Query: 126 DG---GIMMRCIDVLFNSI 141
D GI+ R ++ +FN I
Sbjct: 108 DSVKQGIIPRIVNDIFNHI 126
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 269 EVTTPDEAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDG 328
E T DEA NIN SL L + L + G P+R+SKLT + + G+
Sbjct: 251 EGTVLDEA----KNINKSLSALGNVISALAD----GNKTHIPYRDSKLTRILQESLGGNA 302
Query: 329 DVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQ 360
+++C +P + E + + F ++ V+
Sbjct: 303 RTTIVICCSPASFNESETKSTLDFGRRAKTVK 334
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 216 YSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVTTPDE 275
+ + VSY EIY + + DLL+ + N + ED ++ +V G E V++P++
Sbjct: 135 FHIKVSYYEIYMDKIRDLLD---------VSKVNLSVHEDKNRVPYVKGATERFVSSPED 185
Query: 276 AFQSI 280
F+ I
Sbjct: 186 VFEVI 190
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 142/325 (43%), Gaps = 40/325 (12%)
Query: 83 QKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIG 142
Q+ VY + + + + + YG TGSGK+YTM GT G++ R + LF I
Sbjct: 117 QEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIA 176
Query: 143 RYQPRKRTFRPD-KLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRI 201
Q + K++ FEV ++ ++ + P LK +S P P +
Sbjct: 177 SAQDETPNISYNVKVSYFEVYNE------HVRDLLAPVVPNKPPYYLKVRES-PTEGPYV 229
Query: 202 KDASKV--EDIEE--------DNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRL 251
KD ++V +EE D +V + + ++ H + M + + ++ ++
Sbjct: 230 KDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTT 289
Query: 252 IREDGDKNMFVHGVNEIEVT-TPDEAFQSIGNINNSLMTLRTCLEILRENQLQGT----- 305
R + + + G + T + + NIN SL TL + L + + +
Sbjct: 290 ERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSP 349
Query: 306 ------------NKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFA 353
N + P+R+S LT L K G+ MI C++P DYDE L+ +++A
Sbjct: 350 VKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISP--TDYDETLSTLRYA 407
Query: 354 EMSQEVQISKALPSRLDFGLTPGRR 378
+ ++ ++ ++A+ +++D G++ R
Sbjct: 408 DQAKRIR-TRAVVNQVD-GVSAAER 430
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/366 (21%), Positives = 157/366 (42%), Gaps = 53/366 (14%)
Query: 25 LQVFCRIRPMDNSYDESC----ISVVSDTTVQLTPPDGSNPRYFN-------------NK 67
++V R+RP +N+ +++ + V D + + P +F+ NK
Sbjct: 12 MKVVVRVRP-ENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNK 70
Query: 68 EVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG 127
++++VF +F+ Q +V+ P++ + ++ N +L YG TG+GKT+TM G+ +
Sbjct: 71 DLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEP 130
Query: 128 GIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQV--DILLQEQAEMNGELTKR--- 182
G+M + L+ + + K ++ EV ++ D+L+ E T++
Sbjct: 131 GVMYLTMLHLYKCMDEIKEEK--ICSTAVSYLEVYNEQIRDLLVNSGPLAVREDTQKGVV 188
Query: 183 TPGPGLKRNKSDPEMEPRIKDASKVE-------DIEEDNVYSVFVSYIEIYNNSVHDLLE 235
G L + KS E+ + + +K + ++VF Y+ + + + +
Sbjct: 189 VHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTA-SINQ 247
Query: 236 DMPEGNNARIQL--NNRLIREDGDKNMFVHGVNEIEVTTPDEAFQSIGNINNSLMTLRTC 293
++ + I L + R FV G N IN SL+ L
Sbjct: 248 NVRIAKMSLIDLAGSERASTSGAKGTRFVEGTN----------------INRSLLALGNV 291
Query: 294 LEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFA 353
+ L +++ + N+ P+R SKLT L K G+ MI V+P YD+ +K+A
Sbjct: 292 INALADSKRK--NQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYA 349
Query: 354 EMSQEV 359
++++
Sbjct: 350 NRAKDI 355
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 18/190 (9%)
Query: 20 GSSDPLQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQ-YVFKKIFN 78
G+S+ L+V R RP+ + + + V+L NPR + + + F +++
Sbjct: 18 GASEALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYD 77
Query: 79 VDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSD---GGIMMRCID 135
Q +Y E PL+ +++ NG + YG TG+GKTYTM GT + G++ +
Sbjct: 78 ASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFE 137
Query: 136 VLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDP 195
+F I R Q ++ R L + QE+ +L + PG L+ K +P
Sbjct: 138 HIFTHISRSQNQQYLVRASYLE----------IYQEEIR---DLLSKEPGKRLEL-KENP 183
Query: 196 EMEPRIKDAS 205
E IKD S
Sbjct: 184 ETGVYIKDLS 193
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 283 INNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVED 342
IN SL L + L N+ + IP +R+SKLT L + G+ M+ + P
Sbjct: 305 INLSLSALGNVIAALAGNR---STHIP-YRDSKLTRLLQDSLGGNAKTIMVATLGPASHS 360
Query: 343 YDENLAVMKFAEMSQEVQ 360
YDE+L+ ++FA ++ ++
Sbjct: 361 YDESLSTLRFANRAKNIK 378
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/374 (21%), Positives = 145/374 (38%), Gaps = 72/374 (19%)
Query: 25 LQVFCRIRPMD-NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQ 83
+QV R+RP + S S+V V+ + + Y F +F Q
Sbjct: 19 IQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 84 KQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSD-----------GGIMMR 132
VY V P++ +I N + YG TG+GKT+TM G S GI+ R
Sbjct: 79 IDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIPR 138
Query: 133 CIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNK 192
+ +F + NG E +V +L E+ L P +
Sbjct: 139 TLHQIFEKLTD-------------NGTEFSVKVSLLEIYNEELFDLL---NPSSDVSERL 182
Query: 193 SDPEMEPRIKDASKVEDIEE------DNVYSVF----------VSYIEIYNNSVHDLLED 236
+ +PR K ++ +EE D VY + + + Y++ H +
Sbjct: 183 QMFD-DPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF-- 239
Query: 237 MPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVT---------TPDEAFQSIGNINNSL 287
+ I + I DG++ + + +N +++ D+ + GNIN SL
Sbjct: 240 -----SVTIHMKETTI--DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 292
Query: 288 MTLRTCLEILRENQLQGTNKIP--PFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDE 345
+TL + L E + P P+RESKLT + + G +I ++P + +E
Sbjct: 293 LTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEE 345
Query: 346 NLAVMKFAEMSQEV 359
L+ +++A ++ +
Sbjct: 346 TLSTLEYAHRAKNI 359
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 155/353 (43%), Gaps = 46/353 (13%)
Query: 25 LQVFCRIRP----MDNSYDESCISVV---SDTTVQLTPPDGSNPRYFNNKEV-QYVFKKI 76
++V+CRIRP ++NS D S I+V ++ VQ + N +V ++ F KI
Sbjct: 5 IRVYCRIRPALKNLENS-DTSLINVNEFDDNSGVQSMEV----TKIQNTAQVHEFKFDKI 59
Query: 77 FNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDV 136
F+ V+ EV LV + + N + YG TGSGKT+TM N GI+ I
Sbjct: 60 FDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISH 116
Query: 137 LFNSIGRYQPRKRTFRPDKLNGFEVQSQ--VDILLQEQAEMNGELTKRTPGPGLKRN-KS 193
+FN I + + + ++ + E+ ++ VD+L + K GLK +
Sbjct: 117 IFNWINKLKTKGWDYKVN-CEFIEIYNENIVDLLRSDNN------NKEDTSIGLKHEIRH 169
Query: 194 DPE---------MEPRIKDASKVEDI--EEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNN 242
D E +++ VE I + + + S + ++++ H + G+N
Sbjct: 170 DQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSN 229
Query: 243 ARIQLNNRLIREDGDKNMF-VHGVNEIEVT-TPDEAFQSIGNINNSLMTLRTCLEILREN 300
A+ ++ G N+ + G I V+ + + NIN SL L + L
Sbjct: 230 AKTGAHSY-----GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHAL--G 282
Query: 301 QLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFA 353
Q T + PFR SKLT+L + TGD M V ++P +E L ++FA
Sbjct: 283 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/363 (22%), Positives = 151/363 (41%), Gaps = 82/363 (22%)
Query: 25 LQVFCRIRPMD----NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVD 80
++V+CRIRP++ + ++ ++ V + TV+ +P + ++K Q+++ ++F++
Sbjct: 15 IRVYCRIRPLNEKESSEREKQMLTTVDEFTVE-------HP-WKDDKRKQHIYDRVFDMR 66
Query: 81 VGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNS 140
Q ++ + + LV + + N + YG TGSGKT+T+ G S+ G+ R LFN
Sbjct: 67 ASQDDIFEDTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFNI 125
Query: 141 IGRYQPRKRTFRPDKLNGFEVQ----SQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPE 196
+ R ++ +F L + V+ + VD+LL P+
Sbjct: 126 LKR-DSKRFSF---SLKAYMVELYQDTLVDLLL-------------------------PK 156
Query: 197 MEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDG 256
R+K +I++D+ VFV + S + L + E + R ++ + E+
Sbjct: 157 SARRLK-----LEIKKDSKGMVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEES 211
Query: 257 DKNMFVHGV--NEIEVTTPDEA-----------------FQSIGN-------INNSLMTL 290
++ + V I++ T A S GN IN SL L
Sbjct: 212 SRSHLILSVVIESIDLQTQSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSAL 271
Query: 291 RTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVM 350
+ L N+ P+R KLT L G+ M V V+P + DE +
Sbjct: 272 GDVI-----GALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSL 326
Query: 351 KFA 353
+A
Sbjct: 327 LYA 329
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 130/327 (39%), Gaps = 71/327 (21%)
Query: 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSD---- 126
Y F +F Q VY V P++ +I N + YG TG+GKT+TM G S
Sbjct: 68 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 127
Query: 127 -------GGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGEL 179
GI+ R + +F + NG E +V +L E+ +L
Sbjct: 128 TWEEDPLAGIIPRTLHQIFEKLTD-------------NGTEFSVKVSLLEIYNEELF-DL 173
Query: 180 TKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEE------DNVYSVF----------VSYI 223
+ + D +PR K ++ +EE D VY + + +
Sbjct: 174 LNPSSDVSERLQMFD---DPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLM 230
Query: 224 EIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVT---------TPD 274
Y++ H + + I + I DG++ + + +N +++ D
Sbjct: 231 NAYSSRSHSVF-------SVTIHMKETTI--DGEELVKIGKLNLVDLAGSENIGRSGAVD 281
Query: 275 EAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIP--PFRESKLTHLFKSYFTGDGDVRM 332
+ + GNIN SL+TL + L E + P P+RESKLT + + G +
Sbjct: 282 KRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTRTSI 334
Query: 333 IVCVNPRVEDYDENLAVMKFAEMSQEV 359
I ++P + +E L+ +++A ++ +
Sbjct: 335 IATISPASLNLEETLSTLEYAHRAKNI 361
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 154/353 (43%), Gaps = 46/353 (13%)
Query: 25 LQVFCRIRP----MDNSYDESCISVV---SDTTVQLTPPDGSNPRYFNNKEV-QYVFKKI 76
++V+CRIRP ++NS D S I+V ++ VQ + N +V ++ F KI
Sbjct: 16 IRVYCRIRPALKNLENS-DTSLINVNEFDDNSGVQSMEV----TKIQNTAQVHEFKFDKI 70
Query: 77 FNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDV 136
F+ V+ EV LV + + N + YG TGSGKT+TM N GI+ I
Sbjct: 71 FDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISH 127
Query: 137 LFNSIGRYQPRKRTFRPDKLNGFEVQSQ--VDILLQEQAEMNGELTKRTPGPGLKRN-KS 193
+FN I + + + ++ + E+ ++ VD+L + K GLK +
Sbjct: 128 IFNWINKLKTKGWDYKVN-CEFIEIYNENIVDLLRSDNN------NKEDTSIGLKHEIRH 180
Query: 194 DPE---------MEPRIKDASKVEDI--EEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNN 242
D E +++ VE I + + + S + +++ H + G+N
Sbjct: 181 DQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSN 240
Query: 243 ARIQLNNRLIREDGDKNMF-VHGVNEIEVT-TPDEAFQSIGNINNSLMTLRTCLEILREN 300
A+ ++ G N+ + G I V+ + + NIN SL L + L
Sbjct: 241 AKTGAHSY-----GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHAL--G 293
Query: 301 QLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFA 353
Q T + PFR SKLT+L + TGD M V ++P +E L ++FA
Sbjct: 294 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 346
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 129/327 (39%), Gaps = 71/327 (21%)
Query: 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSD---- 126
Y F +F Q VY V P++ +I N + YG TG+GKT+TM G S
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 127 -------GGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGEL 179
GI+ R + +F + NG E +V +L E+ L
Sbjct: 126 TWEEDPLAGIIPRTLHQIFEKLTD-------------NGTEFSVKVSLLEIYNEELFDLL 172
Query: 180 TKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEE------DNVYSVF----------VSYI 223
P + + +PR K ++ +EE D VY + + +
Sbjct: 173 ---NPSSDVSERLQMFD-DPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLM 228
Query: 224 EIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVT---------TPD 274
Y++ H + + I + I DG++ + + +N +++ D
Sbjct: 229 NAYSSRSHSVF-------SVTIHMKETTI--DGEELVKIGKLNLVDLAGSENIGRSGAVD 279
Query: 275 EAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIP--PFRESKLTHLFKSYFTGDGDVRM 332
+ + GNIN SL+TL + L E + P P+RESKLT + + G +
Sbjct: 280 KRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTRTSI 332
Query: 333 IVCVNPRVEDYDENLAVMKFAEMSQEV 359
I ++P + +E L+ +++A ++ +
Sbjct: 333 IATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 129/327 (39%), Gaps = 71/327 (21%)
Query: 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSD---- 126
Y F +F Q VY V P++ +I N + YG TG+GKT+TM G S
Sbjct: 65 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 124
Query: 127 -------GGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGEL 179
GI+ R + +F + NG E +V +L E+ L
Sbjct: 125 TWEEDPLAGIIPRTLHQIFEKLTD-------------NGTEFSVKVSLLEIYNEELFDLL 171
Query: 180 TKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEE------DNVYSVF----------VSYI 223
P + + +PR K ++ +EE D VY + + +
Sbjct: 172 ---NPSSDVSERLQMFD-DPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLM 227
Query: 224 EIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVT---------TPD 274
Y++ H + + I + I DG++ + + +N +++ D
Sbjct: 228 NAYSSRSHSVF-------SVTIHMKETTI--DGEELVKIGKLNLVDLAGSENIGRSGAVD 278
Query: 275 EAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIP--PFRESKLTHLFKSYFTGDGDVRM 332
+ + GNIN SL+TL + L E + P P+RESKLT + + G +
Sbjct: 279 KRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTRTSI 331
Query: 333 IVCVNPRVEDYDENLAVMKFAEMSQEV 359
I ++P + +E L+ +++A ++ +
Sbjct: 332 IATISPASLNLEETLSTLEYAHRAKNI 358
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 154/353 (43%), Gaps = 46/353 (13%)
Query: 25 LQVFCRIRP----MDNSYDESCISVV---SDTTVQLTPPDGSNPRYFNNKEV-QYVFKKI 76
++V+CRIRP ++NS D S I+V ++ VQ + N +V ++ F KI
Sbjct: 4 IRVYCRIRPALKNLENS-DTSLINVNEFDDNSGVQSMEV----TKIQNTAQVHEFKFDKI 58
Query: 77 FNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDV 136
F+ V+ EV LV + + N + YG TGSGKT+TM N GI+ I
Sbjct: 59 FDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISH 115
Query: 137 LFNSIGRYQPRKRTFRPDKLNGFEVQSQ--VDILLQEQAEMNGELTKRTPGPGLKRN-KS 193
+FN I + + + ++ + E+ ++ VD+L + K GLK +
Sbjct: 116 IFNWINKLKTKGWDYKVN-CEFIEIYNENIVDLLRSDNN------NKEDTSIGLKHEIRH 168
Query: 194 DPE---------MEPRIKDASKVEDI--EEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNN 242
D E +++ VE I + + + S + +++ H + G+N
Sbjct: 169 DQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSN 228
Query: 243 ARIQLNNRLIREDGDKNMF-VHGVNEIEVT-TPDEAFQSIGNINNSLMTLRTCLEILREN 300
A+ ++ G N+ + G I V+ + + NIN SL L + L
Sbjct: 229 AKTGAHSY-----GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHAL--G 281
Query: 301 QLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFA 353
Q T + PFR SKLT+L + TGD M V ++P +E L ++FA
Sbjct: 282 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 334
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 129/327 (39%), Gaps = 71/327 (21%)
Query: 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSD---- 126
Y F +F Q VY V P++ +I N + YG TG+GKT+TM G S
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 127 -------GGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGEL 179
GI+ R + +F + NG E +V +L E+ L
Sbjct: 126 TWEEDPLAGIIPRTLHQIFEKLTD-------------NGTEFSVKVSLLEIYNEELFDLL 172
Query: 180 TKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEE------DNVYSVF----------VSYI 223
P + + +PR K ++ +EE D VY + + +
Sbjct: 173 ---NPSSDVSERLQMFD-DPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLM 228
Query: 224 EIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVT---------TPD 274
Y++ H + + I + I DG++ + + +N +++ D
Sbjct: 229 NAYSSRSHSVF-------SVTIHMKETTI--DGEELVKIGKLNLVDLAGSENIGRSGAVD 279
Query: 275 EAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIP--PFRESKLTHLFKSYFTGDGDVRM 332
+ + GNIN SL+TL + L E + P P+RESKLT + + G +
Sbjct: 280 KRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTRTSI 332
Query: 333 IVCVNPRVEDYDENLAVMKFAEMSQEV 359
I ++P + +E L+ +++A ++ +
Sbjct: 333 IATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 129/327 (39%), Gaps = 71/327 (21%)
Query: 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSD---- 126
Y F +F Q VY V P++ +I N + YG TG+GKT+TM G S
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 127 -------GGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGEL 179
GI+ R + +F + NG E +V +L E+ L
Sbjct: 126 TWEEVPLAGIIPRTLHQIFEKLTD-------------NGTEFSVKVSLLEIYNEELFDLL 172
Query: 180 TKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEE------DNVYSVF----------VSYI 223
P + + +PR K ++ +EE D VY + + +
Sbjct: 173 ---NPSSDVSERLQMFD-DPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLM 228
Query: 224 EIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVT---------TPD 274
Y++ H + + I + I DG++ + + +N +++ D
Sbjct: 229 NAYSSRSHSVF-------SVTIHMKETTI--DGEELVKIGKLNLVDLAGSENIGRSGAVD 279
Query: 275 EAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIP--PFRESKLTHLFKSYFTGDGDVRM 332
+ + GNIN SL+TL + L E + P P+RESKLT + + G +
Sbjct: 280 KRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTRTSI 332
Query: 333 IVCVNPRVEDYDENLAVMKFAEMSQEV 359
I ++P + +E L+ +++A ++ +
Sbjct: 333 IATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 154/353 (43%), Gaps = 46/353 (13%)
Query: 25 LQVFCRIRP----MDNSYDESCISVV---SDTTVQLTPPDGSNPRYFNNKEV-QYVFKKI 76
++V+CRIRP ++NS D S I+V ++ VQ + N +V ++ F KI
Sbjct: 5 IRVYCRIRPALKNLENS-DTSLINVNEFDDNSGVQSMEV----TKIQNTAQVHEFKFDKI 59
Query: 77 FNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDV 136
F+ V+ EV LV + + N + YG TGSGKT+TM N GI+ I
Sbjct: 60 FDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISH 116
Query: 137 LFNSIGRYQPRKRTFRPDKLNGFEVQSQ--VDILLQEQAEMNGELTKRTPGPGLKRN-KS 193
+FN I + + + ++ + E+ ++ VD+L + K GLK +
Sbjct: 117 IFNWINKLKTKGWDYKVN-CEFIEIYNENIVDLLRSDNNN------KEDTSIGLKHEIRH 169
Query: 194 DPE---------MEPRIKDASKVEDI--EEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNN 242
D E +++ VE I + + + S + +++ H + G+N
Sbjct: 170 DQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSN 229
Query: 243 ARIQLNNRLIREDGDKNMF-VHGVNEIEVT-TPDEAFQSIGNINNSLMTLRTCLEILREN 300
A+ ++ G N+ + G I V+ + + NIN SL L + L
Sbjct: 230 AKTGAHSY-----GTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHAL--G 282
Query: 301 QLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFA 353
Q T + PFR SKLT+L + TGD M V ++P +E L ++FA
Sbjct: 283 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 129/327 (39%), Gaps = 71/327 (21%)
Query: 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSD---- 126
Y F +F Q VY V P++ +I N + YG TG+GKT+TM G S
Sbjct: 57 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 116
Query: 127 -------GGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGEL 179
GI+ R + +F + NG E +V +L E+ L
Sbjct: 117 TWEEDPLAGIIPRTLHQIFEKLTD-------------NGTEFSVKVSLLEIYNEELFDLL 163
Query: 180 TKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEE------DNVYSVF----------VSYI 223
P + + +PR K ++ +EE D VY + + +
Sbjct: 164 ---NPSSDVSERLQMFD-DPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLM 219
Query: 224 EIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVT---------TPD 274
Y++ H + + I + I DG++ + + +N +++ D
Sbjct: 220 NAYSSRSHSVF-------SVTIHMKETTI--DGEELVKIGKLNLVDLAGSENIGRSGAVD 270
Query: 275 EAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIP--PFRESKLTHLFKSYFTGDGDVRM 332
+ + GNIN SL+TL + L E + P P+RESKLT + + G +
Sbjct: 271 KRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTRTSI 323
Query: 333 IVCVNPRVEDYDENLAVMKFAEMSQEV 359
I ++P + +E L+ +++A ++ +
Sbjct: 324 IATISPASLNLEETLSTLEYAHRAKNI 350
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 129/327 (39%), Gaps = 71/327 (21%)
Query: 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSD---- 126
Y F +F Q VY V P++ +I N + YG TG+GKT+TM G S
Sbjct: 51 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 110
Query: 127 -------GGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGEL 179
GI+ R + +F + NG E +V +L E+ L
Sbjct: 111 TWEEDPLAGIIPRTLHQIFEKLTD-------------NGTEFSVKVSLLEIYNEELFDLL 157
Query: 180 TKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEE------DNVYSVF----------VSYI 223
P + + +PR K ++ +EE D VY + + +
Sbjct: 158 ---NPSSDVSERLQMFD-DPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLM 213
Query: 224 EIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVT---------TPD 274
Y++ H + + I + I DG++ + + +N +++ D
Sbjct: 214 NAYSSRSHSVF-------SVTIHMKETTI--DGEELVKIGKLNLVDLAGSENIGRSGAVD 264
Query: 275 EAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIP--PFRESKLTHLFKSYFTGDGDVRM 332
+ + GNIN SL+TL + L E + P P+RESKLT + + G +
Sbjct: 265 KRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTRTSI 317
Query: 333 IVCVNPRVEDYDENLAVMKFAEMSQEV 359
I ++P + +E L+ +++A ++ +
Sbjct: 318 IATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 129/327 (39%), Gaps = 71/327 (21%)
Query: 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG--- 127
Y F +F Q VY V P++ +I N + YG TG+GKT+TM G S
Sbjct: 66 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 125
Query: 128 --------GIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGEL 179
GI+ R + +F + NG E +V +L E+ L
Sbjct: 126 TWEEDPLDGIIPRTLHQIFEKLTD-------------NGTEFSVKVSLLEIYNEELFDLL 172
Query: 180 TKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEE------DNVYSVF----------VSYI 223
P + + +PR K ++ +EE D VY + + +
Sbjct: 173 ---NPSSDVSERLQMFD-DPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLM 228
Query: 224 EIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVT---------TPD 274
Y++ H + + I + I DG++ + + +N +++ D
Sbjct: 229 NAYSSRSHSVF-------SVTIHMKETTI--DGEELVKIGKLNLVDLAGSENIGRSGAVD 279
Query: 275 EAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIP--PFRESKLTHLFKSYFTGDGDVRM 332
+ + GNIN SL+TL + L E + P P+RESKLT + + G +
Sbjct: 280 KRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRILQDSLGGRTRTSI 332
Query: 333 IVCVNPRVEDYDENLAVMKFAEMSQEV 359
I ++P + +E L+ +++A ++ +
Sbjct: 333 IATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 153/353 (43%), Gaps = 46/353 (13%)
Query: 25 LQVFCRIRP----MDNSYDESCISVV---SDTTVQLTPPDGSNPRYFNNKEV-QYVFKKI 76
++V+CRIRP ++NS D S I+V ++ VQ + N +V ++ F KI
Sbjct: 5 IRVYCRIRPALKNLENS-DTSLINVNEFDDNSGVQSMEV----TKIQNTAQVHEFKFDKI 59
Query: 77 FNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDV 136
F+ V+ EV LV + + N + YG TGSGKT+TM N GI+ I
Sbjct: 60 FDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISH 116
Query: 137 LFNSIGRYQPRKRTFRPDKLNGFEVQSQ--VDILLQEQAEMNGELTKRTPGPGLKRN-KS 193
+FN I + + + ++ + E+ ++ VD+L + K GLK +
Sbjct: 117 IFNWINKLKTKGWDYKVN-CEFIEIYNENIVDLLRSDNN------NKEDTSIGLKHEIRH 169
Query: 194 DPE---------MEPRIKDASKVEDI--EEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNN 242
D E +++ VE I + + + S + +++ H + G+N
Sbjct: 170 DQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSN 229
Query: 243 ARIQLNNRLIREDGDKNMF-VHGVNEIEVT-TPDEAFQSIGNINNSLMTLRTCLEILREN 300
A+ ++ G N+ + G I V+ + + NI SL L + L
Sbjct: 230 AKTGAHSY-----GTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHAL--G 282
Query: 301 QLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFA 353
Q T + PFR SKLT+L + TGD M V ++P +E L ++FA
Sbjct: 283 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 154/353 (43%), Gaps = 46/353 (13%)
Query: 25 LQVFCRIRP----MDNSYDESCISVVS---DTTVQLTPPDGSNPRYFNNKEV-QYVFKKI 76
++V+ RIRP ++NS D S I+V ++ VQ + N +V ++ F KI
Sbjct: 61 IRVYLRIRPALKNLENS-DTSLINVNEFDDNSGVQSMEV----TKIQNTAQVHEFKFDKI 115
Query: 77 FNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDV 136
F+ V+ EV LV + + N + YG TGSGKT+TM N GI+ I
Sbjct: 116 FDQQDTNVDVFKEVGQ-LVQSSLDGYNVAIFAYGQTGSGKTFTM--LNPGDGIIPSTISH 172
Query: 137 LFNSIGRYQPRKRTFRPDKLNGFEVQSQ--VDILLQEQAEMNGELTKRTPGPGLKRN-KS 193
+FN I + + + ++ + E+ ++ VD+L + K GLK +
Sbjct: 173 IFNWINKLKTKGWDYKVNA-EFIEIYNENIVDLLRSDNN------NKEDTSIGLKHEIRH 225
Query: 194 DPEMEP---------RIKDASKVEDI--EEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNN 242
D E + +++ VE I + + + S + +++ H + G+N
Sbjct: 226 DQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSN 285
Query: 243 ARIQLNNRLIREDGDKNMF-VHGVNEIEVT-TPDEAFQSIGNINNSLMTLRTCLEILREN 300
A+ ++ G N+ + G I V+ + + NIN SL L + L
Sbjct: 286 AKTGAHSY-----GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHAL--G 338
Query: 301 QLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFA 353
Q T + PFR SKLT+L + TGD M V ++P +E L ++FA
Sbjct: 339 QPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 391
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 147/370 (39%), Gaps = 59/370 (15%)
Query: 25 LQVFCRIRP--MDNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKE-----VQYVFKKIF 77
++V+CR+RP ++ D S I + + G+ N E + F IF
Sbjct: 7 IRVYCRVRPPLLNEPQDMSHILIE-----KFNEAKGAQSLTINRNEGRILSYNFQFDMIF 61
Query: 78 NVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVL 137
K+++ E+ LV + + N + YG TGSGKTYTM N+ G++ + +
Sbjct: 62 EPSHTNKEIFEEIRQ-LVQSSLDGYNVCIFAYGQTGSGKTYTM--LNAGDGMIPMTLSHI 118
Query: 138 FNSIGRYQPRKRTFRP-------------DKLNGFEVQSQVDILLQEQA-EMNGELTKR- 182
F + R + D L F+ +D +L Q ++ + K+
Sbjct: 119 FKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQG 178
Query: 183 TPGPGLKRNK--SDPEMEPRIKDASKVEDI-------EEDNVYSVFVSYIEIYNNSVHDL 233
T + R K S +++ +K ASK+ +SVF+ +I N
Sbjct: 179 TYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRN------ 232
Query: 234 LEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQSIGNINNSLMTLRTC 293
+ G ++ +LN L+ G + +N VT E + NIN SL L
Sbjct: 233 ---LHTGETSQGKLN--LVDLAGSER-----INSSAVT--GERLRETQNINKSLSCLGDV 280
Query: 294 LEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFA 353
+ L N + PFR SKLT+L + GD M V + P E L ++FA
Sbjct: 281 IYAL--NTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFA 338
Query: 354 EMSQEVQISK 363
+I+K
Sbjct: 339 SKVNSTKIAK 348
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/360 (21%), Positives = 150/360 (41%), Gaps = 45/360 (12%)
Query: 21 SSDPLQVFCRIRPMD-NSYDESCISVV----SDTTVQLTPPDGSN--------PRYFNNK 67
SSD ++V R RP++ E+ ++++ + V + PP+ PR F
Sbjct: 2 SSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTF--- 58
Query: 68 EVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG 127
F +++ ++ PL+ ++ N + YG TG+GKT+TM G +
Sbjct: 59 ----TFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEP 114
Query: 128 GIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPG 187
G + LF++I + N + S +++ +E +L K
Sbjct: 115 GAIPNSFKHLFDAINSSSSNQ--------NFLVIGSYLELYNEEIR----DLIKNNTKLP 162
Query: 188 LKRNKS-----DPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNN 242
LK +K+ D R+ A+++ + + + V+ ++ + S M
Sbjct: 163 LKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIEC 222
Query: 243 ARIQLNNRLIREDGDKNMFVHGVNEIEVTT--PDEAFQSIGNINNSLMTLRTCLEILREN 300
+ + N +IR G N+ +E + T E IN SL L + L
Sbjct: 223 SEVIENKEVIRV-GKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKL--- 278
Query: 301 QLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQ 360
++G I P+R+SKLT L + G+ M ++P +YDE ++ +++A+ +++++
Sbjct: 279 -VEGATHI-PYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIK 336
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 147/360 (40%), Gaps = 76/360 (21%)
Query: 25 LQVFCRIRPMDN----SYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVD 80
++V+CR+RP+ + + + I V + TV+ D +K Q+++ ++F+ +
Sbjct: 7 IRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKD--------DKAKQHMYDRVFDGN 58
Query: 81 VGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNS 140
Q V+ + + LV + + N + YG TGSGKT+T+ G +S+ G+ R + LF
Sbjct: 59 ATQDDVFEDTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFR- 116
Query: 141 IGRYQPRKRTFRPDKLNGFEVQ----SQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPE 196
I + K +F L + V+ + VD+LL +QA KR K D +
Sbjct: 117 IMKKDSNKFSF---SLKAYMVELYQDTLVDLLLPKQA---------------KRLKLDIK 158
Query: 197 MEPRIKDASKVEDIEEDNVYSVFVSYIEI--------------------YNNSVHDLLED 236
KD+ + +E V S+ +Y E+ ++ H ++
Sbjct: 159 -----KDSKGMVSVENVTVVSI-STYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSV 212
Query: 237 MPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVTTPDEA---FQSIGNINNSLMTLRTC 293
+ E N + Q R K FV V A + +IN SL L
Sbjct: 213 IIESTNLQTQAIAR------GKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDV 266
Query: 294 LEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFA 353
+ + L N+ P+R KLT L G+ M V ++P + DE + +A
Sbjct: 267 I-----SALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYA 321
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 146/360 (40%), Gaps = 61/360 (16%)
Query: 25 LQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSNP------RYFNNKEVQYVFKKIFN 78
++V+CRIRP D++ +++ P D N N++ + + F KIF+
Sbjct: 30 IRVYCRIRPPLPHEDDNI------EHIKVQPFDDDNGDQGMTINRGNSQVIPFKFDKIFD 83
Query: 79 VDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLF 138
+++ EV L+ + + N + YG TGSGKTYTM N GI+ I+ +F
Sbjct: 84 QQETNDEIFKEVGQ-LIQSSLDGYNVCIFAYGQTGSGKTYTM--LNPGDGIVPATINHIF 140
Query: 139 NSIGRYQPRKRTFRPDKLNGFEVQSQ--VDILL-----QEQAEMNGE------------- 178
+ I + R +++ E+ ++ VD+L QE + N +
Sbjct: 141 SWIDKLAARGWSYKV-SCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKT 199
Query: 179 --LTKRTPGPGLKRNKSDPEMEPRIK---DASKVEDIEEDNVYSVFVSYIEIYNNSVHDL 233
+T T R+ D ++ K AS + +S+F+ ++E N
Sbjct: 200 TYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKN------ 253
Query: 234 LEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQSIGNINNSLMTLRTC 293
E E + + L + E + +M V E + +IN SL L
Sbjct: 254 -EGTGEKSQGILNLVDLAGSERLNSSMVV-----------GERLRETQSINKSLSCLGDV 301
Query: 294 LEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFA 353
+ L N G + PFR SKLT+L + G M V ++P +E + ++FA
Sbjct: 302 IHAL--NSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFA 359
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 25 LQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQK 84
++V CR RP++ S ++ + T S P Y F ++F Q+
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP---------YAFDRVFQSSTSQE 59
Query: 85 QVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSD---GGIMMRCIDVLFNSI 141
QVY++ A +V +++ NG + YG T SGKT+TM G D GI+ R + +FN I
Sbjct: 60 QVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYI 119
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 24/97 (24%)
Query: 194 DPE---MEPRIKDASKVEDI-------EEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNA 243
DPE + PRI V+DI +E+ + + VSY EIY + + DLL+
Sbjct: 101 DPEGMGIIPRI-----VQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLD-------- 147
Query: 244 RIQLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQSI 280
+ N + ED ++ +V G E V +PDE +I
Sbjct: 148 -VSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTI 183
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 282 NINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVE 341
NIN SL L + L E G+ +P +R+SK+T + + G+ +++C +P
Sbjct: 253 NINKSLSALGNVISALAE----GSTYVP-YRDSKMTRILQDSLGGNCRTTIVICCSPSSY 307
Query: 342 DYDENLAVMKFAEMSQEV 359
+ E + + F + ++ +
Sbjct: 308 NESETKSTLLFGQRAKTI 325
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 25 LQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQK 84
++V CR RP++ S ++ + T S P Y F ++F Q+
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP---------YAFDRVFQSSTSQE 59
Query: 85 QVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSD---GGIMMRCIDVLFNSI 141
QVY++ A +V +++ NG + YG T SGKT+TM G D GI+ R + +FN I
Sbjct: 60 QVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYI 119
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 24/97 (24%)
Query: 194 DPE---MEPRIKDASKVEDI-------EEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNA 243
DPE + PRI V+DI +E+ + + VSY EIY + + DLL+
Sbjct: 101 DPEGMGIIPRI-----VQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLD-------- 147
Query: 244 RIQLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQSI 280
+ N + ED ++ +V G E V +PDE +I
Sbjct: 148 -VSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTI 183
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 282 NINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVE 341
NIN SL L + L E G+ +P +R+SK+T + + G+ +++C +P
Sbjct: 253 NINKSLSALGNVISALAE----GSTYVP-YRDSKMTRILQDSLGGNCRTTIVICCSPSSY 307
Query: 342 DYDENLAVMKFAEMSQEVQ 360
+ E + + F + ++ ++
Sbjct: 308 NESETKSTLLFGQRAKTIK 326
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 25 LQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQK 84
++V CR RP++ S V+ + T S P Y F ++F Q+
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYVAKFQGEDTVMIASKP---------YAFDRVFQSSTSQE 59
Query: 85 QVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSD---GGIMMRCIDVLFNSI 141
QVY++ A +V +++ NG + YG T SGK +TM G D GI+ R + +FN I
Sbjct: 60 QVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYI 119
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 24/97 (24%)
Query: 194 DPE---MEPRIKDASKVEDI-------EEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNA 243
DPE + PRI V+DI +E+ + + VSY EIY + + DLL+
Sbjct: 101 DPEGMGIIPRI-----VQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLD-------- 147
Query: 244 RIQLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQSI 280
+ N + ED ++ +V G E V +PDE +I
Sbjct: 148 -VSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTI 183
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 282 NINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVE 341
NIN SL L + L E G+ +P +R+SK+T + + G+ +++C +P
Sbjct: 253 NINKSLSALGNVISALAE----GSTYVP-YRDSKMTRILQDSLGGNCRTTIVICCSPSSY 307
Query: 342 DYDENLAVMKFAEMSQEVQ 360
+ E + + F + ++ ++
Sbjct: 308 NESETKSTLLFGQRAKTIK 326
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/356 (23%), Positives = 150/356 (42%), Gaps = 59/356 (16%)
Query: 25 LQVFCRIRPMD----NSYDESCISVVSDTTVQLTPP--DGSNPRYFNNKEVQYVFKKIFN 78
++V R RP+ D I+V ++ T+ + P +Y E ++ K+F+
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHE--FIVDKVFD 59
Query: 79 VDVGQKQVYSEVAHPLVANLIHAKNGLLLT---YGVTGSGKTYTMNGTNSDG-----GIM 130
V VY PL+ +L +NG + + YG TGSGKTYTM G+ G GI
Sbjct: 60 DTVDNFTVYENTIKPLIIDL--YENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIF 117
Query: 131 MRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKR 190
+F + Y D G + S +I + ++ L KR L+
Sbjct: 118 QYAAGDIFTFLNIYD-------KDNTKGIFI-SFYEIYCGKLYDL---LQKRKMVAALEN 166
Query: 191 NKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYI---EIYNNSVHDLLEDMPEGNNARIQL 247
K E +KD + + ++ + + + +I NS +D E + + L
Sbjct: 167 GKK----EVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQND------ESSRSHAIL 216
Query: 248 NNRLIREDGDKNMFVHGVNEIEVTTPDEAFQSI----------GNINNSLMTLRTCLEIL 297
N L +D +KN + + I++ + ++ NIN SL+ L+ C+ +
Sbjct: 217 NIDL--KDINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAM 274
Query: 298 RENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFA 353
++ N I PFR+S+LT + + F G MI ++P + ++ L ++++
Sbjct: 275 DSDK----NHI-PFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYS 325
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 283 INNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVED 342
IN+SL+ L + L + Q +G+N P+R+SK+T + K G+ MI CV+P D
Sbjct: 272 INSSLLALGNVISALGDPQRRGSNI--PYRDSKITRILKDSLGGNAKTVMIACVSPSSSD 329
Query: 343 YDENLAVMKFAEMSQ 357
+DE L + +A +Q
Sbjct: 330 FDETLNTLNYASRAQ 344
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 24 PLQVFCRIRPMDNSY----DESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNV 79
P++V R+RP+ +SC+ Q+ P G R ++ + F +
Sbjct: 12 PVRVALRVRPLLPKELLHGHQSCL--------QVEPGLG---RVTLGRDRHFGFHVVLAE 60
Query: 80 DVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121
D GQ+ VY PL+ N + YG TGSGKTYTM
Sbjct: 61 DAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG 102
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 218 VFVSYIEIYNNSVHDLLEDMPEGNNAR-IQLNNRLIREDGDKNMFVHGVNEIEVTTPDEA 276
V VSY+E+Y DLLE G +R IQL RED N+ + GV E++V DE
Sbjct: 138 VHVSYLEVYKEEFRDLLE---VGTASRDIQL-----REDERGNVVLCGVKEVDVEGLDEV 189
Query: 277 F 277
Sbjct: 190 L 190
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/367 (20%), Positives = 138/367 (37%), Gaps = 67/367 (18%)
Query: 20 GSSDPLQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFK--KIF 77
G+ + F R++P D+ E ++ + NN++ + FK +
Sbjct: 21 GTRKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVL 80
Query: 78 NVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG---GIMMRCI 134
+ D Q VY VA +V+ + NG ++ YG TG+GKTYTM G + GI+ R +
Sbjct: 81 H-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRAL 139
Query: 135 DVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSD 194
+F I T R L + +S D+L +
Sbjct: 140 QQVFRMIEERPTHAITVRVSYLEIYN-ESLFDLL-----------------------STL 175
Query: 195 PEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSV-HDLLEDMPEGNNARIQLNNRL-- 251
P + P + + VE N VF+ + ++ S D + EG RI ++ +
Sbjct: 176 PYVGPSVTPMTIVE-----NPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNK 230
Query: 252 ----------------IREDGDKNMFVHGVNEIEVTTPD---------EAFQSIGNINNS 286
R ++ +N +++ + + + IN S
Sbjct: 231 NSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKS 290
Query: 287 LMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDEN 346
L L + L + Q + I PFR+ KLTH K G+ ++ ++ + +E
Sbjct: 291 LSFLEQAIIALGD---QKRDHI-PFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEET 346
Query: 347 LAVMKFA 353
L+ ++FA
Sbjct: 347 LSSLRFA 353
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 153/370 (41%), Gaps = 61/370 (16%)
Query: 25 LQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSN--------PRYFNN--KEVQYVFK 74
++VFCRIR + +S S S D P D ++ R NN ++++F
Sbjct: 376 IRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFD 435
Query: 75 KIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCI 134
KIF + V+ E++ L+ + N + YG TGSGKT+TM ++ G++ +
Sbjct: 436 KIFEREQSNDLVFEELSQ-LIQCSLDGTNVCVFAYGQTGSGKTFTM--SHPTNGMIPLSL 492
Query: 135 DVLFNSIGRYQPRKRTFRP-DKLNGFEVQSQVDIL----------------LQEQAEMNG 177
+FN I + + ++ K ++ VD+L + + +
Sbjct: 493 KKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTN 552
Query: 178 ELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNN----SVHDL 233
T P + + R A+K D +S+F+ ++ YN+ S +
Sbjct: 553 VSTIDIKSPEQAITILNQANKKRSTAATKSND-HSSRSHSIFIIDLQGYNSLTKESSYGT 611
Query: 234 LEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQSIGNINNSLMTLRTC 293
L + + R LNN R +GD+ +N ++ +G++ +SL
Sbjct: 612 LNLIDLAGSER--LNNS--RAEGDRLKETQAIN--------KSLSCLGDVIHSL------ 653
Query: 294 LEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFA 353
N G++ P+R SKLT+L K G+ M V ++P +D +E + ++FA
Sbjct: 654 ------NLKDGSH--VPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFA 705
Query: 354 EMSQEVQISK 363
+I+K
Sbjct: 706 TKVNNTRINK 715
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 283 INNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVED 342
IN+SL+ L + L + Q +G++ P+R+SK+T + K G+ MI CV+P D
Sbjct: 272 INSSLLALGNVISALGDPQRRGSHI--PYRDSKITRILKDSLGGNAKTVMIACVSPSSSD 329
Query: 343 YDENLAVMKFAEMSQ 357
+DE L + +A +Q
Sbjct: 330 FDETLNTLNYASRAQ 344
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 24 PLQVFCRIRPMDNSY----DESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNV 79
P++V R+RP+ +SC+ Q+ P G R ++ + F +
Sbjct: 12 PVRVALRVRPLLPKELLHGHQSCL--------QVEPGLG---RVTLGRDRHFGFHVVLAE 60
Query: 80 DVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121
D GQ+ VY PL+ N + YG TGSGKTYTM
Sbjct: 61 DAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG 102
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 218 VFVSYIEIYNNSVHDLLEDMPEGNNAR-IQLNNRLIREDGDKNMFVHGVNEIEVTTPDEA 276
V VSY+E+Y DLLE G +R IQL RED N+ + GV E++V DE
Sbjct: 138 VHVSYLEVYKEEFRDLLE---VGTASRDIQL-----REDERGNVVLCGVKEVDVEGLDEV 189
Query: 277 F 277
Sbjct: 190 L 190
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 23/126 (18%)
Query: 25 LQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQ------YVFKKIFN 78
++V CR RP++ + ++ D P++ + V YVF ++
Sbjct: 8 IKVMCRFRPLNEA--------------EILRGDKFIPKFKGEETVVIGQGKPYVFDRVLP 53
Query: 79 VDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSD---GGIMMRCID 135
+ Q+QVY+ A +V +++ NG + YG T SGKT+TM G D GI+ R
Sbjct: 54 PNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAH 113
Query: 136 VLFNSI 141
+F+ I
Sbjct: 114 DIFDHI 119
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 194 DPEME---PRIKD--ASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLN 248
DP++ PRI + ++E+ + + VSY EIY + + DLL+ +
Sbjct: 101 DPQLMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLD---------VSKT 151
Query: 249 NRLIREDGDKNMFVHGVNEIEVTTPDEAFQSI 280
N + ED ++ +V G E V++P+E I
Sbjct: 152 NLAVHEDKNRVPYVKGCTERFVSSPEEVMDVI 183
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 12/115 (10%)
Query: 25 LQVFCRIRPM----DNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKE-VQYVFKKIFNV 79
++V R+RP + D C+ + ++++ + N++E ++Y F +
Sbjct: 23 VRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIA-------NWRNHQETLKYQFDAFYGE 75
Query: 80 DVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCI 134
Q+ +Y+ P++ +L+ +N +L YG TG+GKT+TM G+ G++ R +
Sbjct: 76 RSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRAL 130
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
G IN SL L ++ L QG ++P +R+SKLT L + G +I + P
Sbjct: 274 GAINTSLFVLGKVVDALN----QGLPRVP-YRDSKLTRLLQDSLGGSAHSILIANIAPER 328
Query: 341 EDYDENLAVMKFAEMSQEV 359
Y + ++ + FA S+EV
Sbjct: 329 RFYLDTVSALNFAARSKEV 347
>pdb|3VHX|B Chain B, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|D Chain D, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|F Chain F, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|H Chain H, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 120
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 556 WLHHTPGQVLLNTPHGTVFQPTGWKKRKSVTALTDVKDIVDPKLAKYSLMTQEPNTDGEM 615
W+ H P N TV QP ++ + K KY L QE +DGE+
Sbjct: 28 WVDHKPAS---NMQTETVMQP----HVPHAITVSVANEKALAKCEKYMLTHQELASDGEI 80
Query: 616 ETHLFKVNYLDGDVLPTVGGGAQVVFNELETLRQTSP 652
ET L K GD+ T GGG V F ++ETL+Q SP
Sbjct: 81 ETKLIK-----GDIYKTRGGGQSVQFTDIETLKQESP 112
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 283 INNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGD-VRMIVCVNPRVE 341
IN SL+ L+ C+ L +N+ PFRESKLT + + F G+ MI ++P +
Sbjct: 310 INKSLLALKECIRALGQNKAH-----TPFRESKLTQVLRDSFIGENSRTCMIATISPGIS 364
Query: 342 DYDENLAVMKFAEMSQEV 359
+ L +++A+ +E+
Sbjct: 365 SCEYTLNTLRYADRVKEL 382
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 62 RYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121
+Y N+ + F F+ + VY A PLV + YG TGSGKT+TM
Sbjct: 96 KYLENQ--AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 153
Query: 122 G 122
G
Sbjct: 154 G 154
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 283 INNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGD-VRMIVCVNPRVE 341
IN SL+ L+ C+ L +N+ PFRESKLT + + F G+ MI ++P +
Sbjct: 258 INKSLLALKECIRALGQNKAH-----TPFRESKLTQVLRDSFIGENSRTCMIAMISPGIS 312
Query: 342 DYDENLAVMKFAEMSQEV 359
+ L +++A+ +E+
Sbjct: 313 SCEYTLNTLRYADRVKEL 330
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 62 RYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121
+Y N+ + F F+ + VY A PLV + YG TGSGKT+TM
Sbjct: 44 KYLENQA--FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 101
Query: 122 G------TNSDGGIM-MRCIDVLFNSIGRYQPRKRTFRPD-KLNGFEV-QSQVDILLQEQ 172
G N+ GI M DV + + QPR R + + FE+ +V LL ++
Sbjct: 102 GDLSGKSQNASKGIYAMASRDVF---LLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKK 158
Query: 173 AEM 175
A++
Sbjct: 159 AKL 161
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGD-VRMIVCVNPR 339
IN SL+ L+ C+ L +N+ PFRESKLT + + F G+ MI ++P
Sbjct: 328 AEINKSLLALKECIRALGQNKAH-----TPFRESKLTQVLRDSFIGENSRTCMIAMISPG 382
Query: 340 VEDYDENLAVMKFAEMSQEV 359
+ + L +++A+ +E+
Sbjct: 383 ISSCEYTLNTLRYADRVKEL 402
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Query: 62 RYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121
+Y N+ + F F+ + VY A PLV + YG TGSGKT+TM
Sbjct: 116 KYLENQ--AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 173
Query: 122 G------TNSDGGIM-MRCIDVLFNSIGRYQPRKR 149
G N+ GI M DV + + QPR R
Sbjct: 174 GDLSGKSQNASKGIYAMASRDVF---LLKNQPRYR 205
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG--- 127
+ F ++F GQ +V+ E+A LV + + + YG TGSGKT+TM G
Sbjct: 85 FSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQL 143
Query: 128 -GIMMRCIDVLFN 139
G++ R + LF+
Sbjct: 144 EGLIPRALRHLFS 156
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 283 INNSLMTLRTCLEIL--RENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
IN+SL TL + L +E+ + P+R SKLT+L ++ G + M V ++P
Sbjct: 305 INSSLSTLGLVIMALSNKESHV-------PYRNSKLTYLLQNSLGGSAKMLMFVNISPLE 357
Query: 341 EDYDENLAVMKFA 353
E+ E+L ++FA
Sbjct: 358 ENVSESLNSLRFA 370
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 11/56 (19%)
Query: 185 GPGLKRNKSDPEMEPRIKDA-----SKVEDIE-EDNVYSVFVSYIEIYNNSVHDLL 234
GPG DP++E I A S +++ + YS SY+EIYN +V DLL
Sbjct: 136 GPG-----GDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLL 186
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 21 SSDPLQ-----VFCRIRPMDNS----YDESCISVVSDTTVQLTPPDGSN--PRYFNNKEV 69
++DP+ V R RP++ D I++ S V + P RY N+
Sbjct: 82 TADPIDEHRICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQ-- 139
Query: 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG 122
+ F F+ + VY A PLV + YG TGSGKT+TM G
Sbjct: 140 TFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGG 192
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGD-VRMIVCVNPR 339
IN SL+ L+ C+ L N+ PFR SKLT + + F G+ MI ++P
Sbjct: 346 AEINKSLLALKECIRALGRNKPH-----TPFRASKLTQVLRDSFIGENSRTCMIATISPG 400
Query: 340 VEDYDENLAVMKFAEMSQEV 359
+ + L +++A +E+
Sbjct: 401 MASCENTLNTLRYANRVKEL 420
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 218 VFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVTTPDEAF 277
V+ ++ EIY+ V DLL N + +L + EDG + + V G+ E EV ++
Sbjct: 229 VYATFFEIYSGKVFDLL-------NRKTKLR---VLEDGKQQVQVVGLQEREVKCVEDVL 278
Query: 278 QSIGNINNSLMT 289
+ I +I NS T
Sbjct: 279 KLI-DIGNSCRT 289
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGI 129
++ F F + Q ++Y + PLV L+ L YG TG+GK+Y+M G G I
Sbjct: 62 EFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM-GMTPPGEI 120
Query: 130 MMRCIDVLFNSIG 142
+ + +L ++G
Sbjct: 121 LPEHLGILPRALG 133
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 52/191 (27%)
Query: 218 VFVSYIEIYNNSVHDLLEDMPEGN--NARIQLNNRL----------IREDGDKNMFV--- 262
V+ S+IEIYN DLL P AR Q L I E G +N V
Sbjct: 152 VYASFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPT 211
Query: 263 ---------HGVNEIEVTTP-------------DEAFQSIG----------NINNSLMTL 290
H + I V + E + G NIN L+++
Sbjct: 212 NMNSNSSRSHAIVTIHVKSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSI 271
Query: 291 RTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVM 350
+ + + + P+R+S LT + ++ T + + C++P D E L+ +
Sbjct: 272 NKVVM-----SMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTL 326
Query: 351 KFAEMSQEVQI 361
+F ++++++
Sbjct: 327 RFGTSAKKLRL 337
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGI 129
++ F F + Q ++Y + PLV L+ L YG TG+GK+Y+M G G I
Sbjct: 62 EFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM-GMTPPGEI 120
Query: 130 MMRCIDVLFNSIG 142
+ + +L ++G
Sbjct: 121 LPEHLGILPRALG 133
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 52/191 (27%)
Query: 218 VFVSYIEIYNNSVHDLLEDMPEGN--NARIQLNNRL----------IREDGDKNMFV--- 262
V+ S+IEIYN DLL P AR Q L I E G +N V
Sbjct: 152 VYASFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPT 211
Query: 263 ---------HGVNEIEVTTP-------------DEAFQSIG----------NINNSLMTL 290
H + I V + E + G NIN L+++
Sbjct: 212 NMNSNSSRSHAIVTIHVKSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSI 271
Query: 291 RTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVM 350
+ + + + P+R+S LT + ++ T + + C++P D E L+ +
Sbjct: 272 NKVVM-----SMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTL 326
Query: 351 KFAEMSQEVQI 361
+F ++ +
Sbjct: 327 RFGTSAKAAAL 337
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 282 NINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVE 341
NIN SL L + L E GT P+R+SK+T + + G+ +++C +P V
Sbjct: 3 NINKSLSALGNVISALAE----GTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVF 58
Query: 342 DYDENLAVMKFAEMSQEVQ 360
+ E + + F + ++ ++
Sbjct: 59 NEAETKSTLMFGQRAKTIK 77
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 284 NNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDY 343
N SL L + L E GT P+R+SK+T + + G+ +++C +P V +
Sbjct: 1 NKSLSALGNVISALAE----GTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNE 56
Query: 344 DENLAVMKFAEMSQEVQ 360
E + + F + ++ ++
Sbjct: 57 AETKSTLMFGQRAKTIK 73
>pdb|2JYN|A Chain A, A Novel Solution Nmr Structure Of Protein Yst0336 From
Saccharomyces Cerevisiae. Northeast Structural Genomics
Consortium Target Yt51ONTARIO CENTRE FOR STRUCTURAL
Proteomics Target Yst0336
Length = 146
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 20/98 (20%)
Query: 150 TFRPDKLNGFE-VQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPE-----ME--PRI 201
TF + + E ++ Q ++ EQAE +L PG L+ K D E ME P
Sbjct: 3 TFNAETADNLEDIEKQFAVVAVEQAETYWKLLTSVPGSKLRLTKFDDEIYENFMERFPEY 62
Query: 202 KDASKVEDIEEDNV------------YSVFVSYIEIYN 227
KD +V+ E+ + +++F IE YN
Sbjct: 63 KDVERVKKFTEEELKTKEAKERWRKFFTIFEKKIEDYN 100
>pdb|2EWW|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Atp
Length = 372
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120
V L H K GL+L G TGSGK+ T+
Sbjct: 128 VLELCHRKXGLILVTGPTGSGKSTTI 153
>pdb|2GSZ|A Chain A, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|B Chain B, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|C Chain C, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|D Chain D, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|E Chain E, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
pdb|2GSZ|F Chain F, Structure Of A. Aeolicus Pilt With 6 Monomers Per
Asymmetric Unit
Length = 363
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120
V L H K GL+L G TGSGK+ T+
Sbjct: 117 VLELCHRKXGLILVTGPTGSGKSTTI 142
>pdb|3H71|A Chain A, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana)
pdb|3H71|B Chain B, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana)
Length = 477
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 295 EILRENQLQG-----TNKIPPFRESKLTHLFKSYFTGDG 328
++ + NQL G TNK PFR +K ++L+ SY DG
Sbjct: 191 DLYKGNQLLGNIYFTTNKTSPFRIAKDSYLWXSYSDDDG 229
>pdb|2EYU|A Chain A, The Crystal Structure Of The C-Terminal Domain Of Aquifex
Aeolicus Pilt
pdb|2EYU|B Chain B, The Crystal Structure Of The C-Terminal Domain Of Aquifex
Aeolicus Pilt
Length = 261
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120
V L H K GL+L G TGSGK+ T+
Sbjct: 17 VLELCHRKXGLILVTGPTGSGKSTTI 42
>pdb|3H72|A Chain A, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana) In Complex With Nana
pdb|3H72|B Chain B, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana) In Complex With Nana
pdb|3H73|A Chain A, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana) In Complex With Dana
pdb|3H73|B Chain B, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana) In Complex With Dana
Length = 477
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 295 EILRENQLQG-----TNKIPPFRESKLTHLFKSYFTGDG 328
++ + NQL G TNK PFR +K ++L+ SY DG
Sbjct: 191 DLYKGNQLLGNIYFTTNKTSPFRIAKDSYLWMSYSDDDG 229
>pdb|2W20|A Chain A, Structure Of The Catalytic Domain Of The Native Nana
Sialidase From Streptococcus Pneumoniae
pdb|2W20|B Chain B, Structure Of The Catalytic Domain Of The Native Nana
Sialidase From Streptococcus Pneumoniae
Length = 471
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 295 EILRENQLQG-----TNKIPPFRESKLTHLFKSYFTGDG 328
++ + NQL G TNK PFR +K ++L+ SY DG
Sbjct: 187 DLYKGNQLLGNIYFTTNKTSPFRIAKDSYLWMSYSDDDG 225
>pdb|2VVZ|A Chain A, Structure Of The Catalytic Domain Of Streptococcus
Pneumoniae Sialidase Nana
pdb|2VVZ|B Chain B, Structure Of The Catalytic Domain Of Streptococcus
Pneumoniae Sialidase Nana
Length = 504
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 295 EILRENQLQG-----TNKIPPFRESKLTHLFKSYFTGDG 328
++ + NQL G TNK PFR +K ++L+ SY DG
Sbjct: 189 DLYKGNQLLGNIYFTTNKTSPFRIAKDSYLWMSYSDDDG 227
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120
V L H K GL+L G TGSGK+ T+
Sbjct: 128 VLELCHRKMGLILVTGPTGSGKSTTI 153
>pdb|2ABQ|A Chain A, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
pdb|2ABQ|B Chain B, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
Length = 306
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 620 FKVNYLDGDVLPTVGGGAQVVFNELETLRQTSPLSSPVKHRIAAFNARSTED 671
F VN G+V +VG G VV L L++ L V +AA +A + D
Sbjct: 232 FHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSATAFSD 283
>pdb|1RT3|A Chain A, Azt Drug Resistant Hiv-1 Reverse Transcriptase Complexed
With 1051u91
Length = 560
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 89 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 141
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 142 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 176
>pdb|3DRR|A Chain A, Hiv Reverse Transcriptase Y181c Mutant In Complex With
Inhibitor R8e
Length = 563
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 92 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 144
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 145 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 179
>pdb|2JLE|A Chain A, Novel Indazole Nnrtis Created Using Molecular Template
Hybridization Based On Crystallographic Overlays
pdb|2JLE|B Chain B, Novel Indazole Nnrtis Created Using Molecular Template
Hybridization Based On Crystallographic Overlays
Length = 566
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 89 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 141
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 142 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 176
>pdb|1LWE|A Chain A, Crystal Structure Of M41lT215Y MUTANT HIV-1 Reverse
Transcriptase (Rtmn) In Complex With Nevirapine
Length = 560
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 89 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 141
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 142 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 176
>pdb|1RTD|A Chain A, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
pdb|1RTD|C Chain C, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
Length = 554
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 89 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 141
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 142 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 176
>pdb|3FFI|A Chain A, Hiv-1 Rt With Pyridone Non-Nucleoside Inhibitor
Length = 561
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 90 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 142
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 143 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 177
>pdb|3DI6|A Chain A, Hiv-1 Rt With Pyridazinone Non-Nucleoside Inhibitor
pdb|3DYA|A Chain A, Hiv-1 Rt With Non-Nucleoside Inhibitor Annulated Pyrazole
1
pdb|3E01|A Chain A, Hiv-Rt With Non-Nucleoside Inhibitor Annulated Pyrazole 2
pdb|3M8P|A Chain A, Hiv-1 Rt With Nnrti Tmc-125
pdb|3M8Q|A Chain A, Hiv-1 Rt With Aminopyrimidine Nnrti
pdb|3NBP|A Chain A, Hiv-1 Reverse Transcriptase With Aminopyrimidine Inhibitor
2
Length = 561
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 89 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 141
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 142 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 176
>pdb|2OPP|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw420867x
Length = 542
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 86 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 138
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 139 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 173
>pdb|1LWF|A Chain A, Crystal Structure Of A Mutant Hiv-1 Reverse Transcriptase
(rtmq+m184v: M41l/d67n/k70r/m184v/t215y) In Complex With
Nevirapine
Length = 560
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 89 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 141
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 142 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 176
>pdb|1JKH|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Dmp-266(Efavirenz)
pdb|1JLA|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
pdb|1JLB|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1JLC|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Pett-2
Length = 560
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 89 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 141
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 142 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 176
>pdb|3KJV|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Dna
pdb|3KK1|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Nuceotide
Inhibitor Gs- 9148-Diphosphate Bound In Nucleotide Site
pdb|3KK2|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Datp Bound In
The Nucleotide Binding Site
pdb|3KK3|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Gs-9148
Terminated Primer
Length = 560
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 89 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 141
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 142 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 176
>pdb|2RF2|A Chain A, Hiv Reverse Transcriptase In Complex With Inhibitor 7e
(Nnrti)
pdb|3C6T|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 14
pdb|3C6U|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 22
pdb|3DRP|A Chain A, Hiv Reverse Transcriptase In Complex With Inhibitor R8e
pdb|3I0R|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 3
pdb|3I0S|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 7
pdb|3T19|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Wild
Type) In Complex With Inhibitor M05
pdb|3T19|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Wild
Type) In Complex With Inhibitor M05
pdb|2YNG|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk560
pdb|2YNH|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk500
pdb|2YNI|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk952
Length = 563
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 92 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 144
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 145 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 179
>pdb|2RKI|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Triazole Derived Nnrti
pdb|3LAK|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Heterocycle Pyrimidinedione
Non-Nucleoside Inhibitor
pdb|3LAK|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Heterocycle Pyrimidinedione
Non-Nucleoside Inhibitor
pdb|3LAL|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Ethyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAL|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Ethyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAM|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Propyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAM|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Propyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAN|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Butyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAN|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Butyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3MEC|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Tmc125
pdb|3MEE|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Tmc278
pdb|2WON|A Chain A, Crystal Structure Of Uk-453061 Bound To Hiv-1 Reverse
Transcriptase (Wild-Type).
pdb|3QIP|A Chain A, Structure Of Hiv-1 Reverse Transcriptase In Complex With
An Rnase H Inhibitor And Nevirapine
pdb|4I7F|A Chain A, Hiv-1 Reverse Transcriptase In Complex With A Phosphonate
Analog Of Nevirapine
Length = 560
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 89 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 141
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 142 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 176
>pdb|1JLF|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 89 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 141
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 142 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 176
>pdb|1LW0|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1LW2|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With 1051u91
Length = 560
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 89 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 141
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 142 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 176
>pdb|2YNF|B Chain B, Hiv-1 Reverse Transcriptase Y188l Mutant In Complex With
Inhibitor Gsk560
pdb|2YNG|B Chain B, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk560
pdb|2YNH|B Chain B, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk500
pdb|2YNI|B Chain B, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk952
Length = 447
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 108 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 160
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 161 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 195
>pdb|2YNF|A Chain A, Hiv-1 Reverse Transcriptase Y188l Mutant In Complex With
Inhibitor Gsk560
Length = 563
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 92 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 144
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 145 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 179
>pdb|1REV|A Chain A, Hiv-1 Reverse Transcriptase
pdb|1RT2|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Tnk-651
pdb|1RT1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Mkc-442
pdb|1KLM|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Bhap U-90152
pdb|1RT4|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc781
pdb|1RT5|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc10
pdb|1RT6|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc38
pdb|1RT7|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc84
pdb|1DTT|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-2 (Pett130a94)
pdb|1DTQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-1 (Pett131a94)
pdb|1C1B|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gca-186
pdb|1C1C|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Tnk-6123
pdb|1C0T|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+21.1326
pdb|1C0U|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+50.0934
pdb|1EP4|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With S-1153
pdb|1JLQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With 739w94
pdb|1TKT|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw426318
pdb|1TKX|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw490745
pdb|1TKZ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw429576
pdb|1TL1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw451211
pdb|1TL3|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw450557
pdb|3DLE|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gf128590.
pdb|3DLG|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw564511.
pdb|1RTJ|A Chain A, Mechanism Of Inhibition Of Hiv-1 Reverse Transcriptase By
Non-Nucleoside Inhibitors
pdb|1RTI|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1VRT|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1RTH|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1VRU|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
Length = 560
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 89 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 141
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 142 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 176
>pdb|4B3Q|A Chain A, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A Unique
Rt Conformation And Substrate Interface
Length = 560
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 89 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 141
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 142 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 176
>pdb|1FK9|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Dmp- 266(Efavirenz)
Length = 543
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 89 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 141
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 142 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 176
>pdb|1JLE|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase
pdb|1JLG|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
Length = 560
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 89 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 141
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE R+ +P
Sbjct: 142 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFRKQNP 176
>pdb|3CS1|A Chain A, Flagellar Calcium-binding Protein (fcabp) From T. Cruzi
Length = 219
Score = 28.9 bits (63), Expect = 10.0, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 377 RRKFNEASKKMREILNNEKKMESLASAMPLIDSGVLYRLRKDVHVERLRMMKERQEEKTK 436
R K EA ++ E+ K E+ + SG L L+ D R+R + +R +K++
Sbjct: 40 REKTAEAKQRRIELFKKFDKNETGKLXYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSR 99
Query: 437 ATKSKLSQK 445
SKL K
Sbjct: 100 TLGSKLENK 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,016,209
Number of Sequences: 62578
Number of extensions: 825033
Number of successful extensions: 1669
Number of sequences better than 100.0: 171
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 1450
Number of HSP's gapped (non-prelim): 256
length of query: 690
length of database: 14,973,337
effective HSP length: 106
effective length of query: 584
effective length of database: 8,340,069
effective search space: 4870600296
effective search space used: 4870600296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)