Query psy2748
Match_columns 690
No_of_seqs 316 out of 1747
Neff 6.5
Searched_HMMs 46136
Date Sat Aug 17 00:11:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0247|consensus 100.0 5E-113 1E-117 945.0 26.5 594 16-653 24-797 (809)
2 KOG0243|consensus 100.0 1.3E-66 2.8E-71 600.0 34.2 288 20-396 46-418 (1041)
3 KOG0245|consensus 100.0 4.8E-66 1E-70 584.5 23.7 352 22-477 3-440 (1221)
4 KOG4280|consensus 100.0 2.7E-65 5.8E-70 568.0 19.4 268 21-370 3-347 (574)
5 cd01368 KISc_KIF23_like Kinesi 100.0 4.1E-63 8.8E-68 535.9 28.1 260 23-357 1-345 (345)
6 PLN03188 kinesin-12 family pro 100.0 7.3E-63 1.6E-67 573.5 28.7 265 22-369 97-444 (1320)
7 cd01373 KISc_KLP2_like Kinesin 100.0 4E-62 8.6E-67 526.8 26.9 255 23-359 1-337 (337)
8 cd01370 KISc_KIP3_like Kinesin 100.0 5E-62 1.1E-66 526.2 27.5 259 24-359 1-338 (338)
9 KOG0241|consensus 100.0 1.8E-61 4E-66 537.5 26.6 275 21-369 2-361 (1714)
10 KOG0240|consensus 100.0 1.8E-61 3.8E-66 524.4 25.1 261 21-369 5-341 (607)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 6.6E-60 1.4E-64 513.2 28.1 270 23-366 1-356 (356)
12 cd01367 KISc_KIF2_like Kinesin 100.0 3E-60 6.4E-65 509.3 25.0 252 23-357 1-322 (322)
13 KOG0242|consensus 100.0 4E-60 8.8E-65 544.8 24.8 266 22-369 5-341 (675)
14 cd01376 KISc_KID_like Kinesin 100.0 1.2E-58 2.5E-63 496.4 26.5 246 24-357 1-319 (319)
15 cd01369 KISc_KHC_KIF5 Kinesin 100.0 2.9E-58 6.2E-63 494.7 26.2 249 23-359 2-325 (325)
16 cd01375 KISc_KIF9_like Kinesin 100.0 3.2E-58 7E-63 495.9 26.4 259 24-357 1-334 (334)
17 cd01374 KISc_CENP_E Kinesin mo 100.0 7.7E-58 1.7E-62 490.6 27.6 248 24-359 1-321 (321)
18 cd01364 KISc_BimC_Eg5 Kinesin 100.0 7.6E-58 1.7E-62 496.5 27.1 261 23-367 2-351 (352)
19 cd01371 KISc_KIF3 Kinesin moto 100.0 9.1E-58 2E-62 492.3 26.3 254 23-359 1-333 (333)
20 cd01366 KISc_C_terminal Kinesi 100.0 5.5E-56 1.2E-60 477.8 27.3 255 22-361 1-328 (329)
21 cd01372 KISc_KIF4 Kinesin moto 100.0 3.3E-56 7.1E-61 481.7 25.2 251 24-360 2-341 (341)
22 smart00129 KISc Kinesin motor, 100.0 1.3E-54 2.8E-59 468.1 28.1 258 24-365 1-334 (335)
23 KOG0239|consensus 100.0 2E-56 4.3E-61 512.5 14.7 274 8-364 299-645 (670)
24 cd00106 KISc Kinesin motor dom 100.0 4.3E-54 9.3E-59 462.5 28.3 255 24-357 1-328 (328)
25 PF00225 Kinesin: Kinesin moto 100.0 2.2E-53 4.7E-58 458.3 13.1 223 65-359 37-335 (335)
26 KOG0246|consensus 100.0 3.8E-49 8.3E-54 426.8 20.6 263 22-364 207-546 (676)
27 COG5059 KIP1 Kinesin-like prot 100.0 8.9E-46 1.9E-50 422.2 18.1 261 17-367 16-344 (568)
28 KOG0244|consensus 100.0 6.2E-45 1.4E-49 414.8 17.7 223 68-368 31-326 (913)
29 cd01363 Motor_domain Myosin an 100.0 5.7E-34 1.2E-38 283.0 15.3 178 86-338 8-186 (186)
30 COG0556 UvrB Helicase subunit 95.1 0.019 4.1E-07 64.8 4.1 47 70-121 4-50 (663)
31 COG2805 PilT Tfp pilus assembl 92.8 0.059 1.3E-06 57.4 2.0 35 87-121 108-143 (353)
32 COG2804 PulE Type II secretory 91.6 0.21 4.5E-06 56.8 4.7 30 93-122 248-277 (500)
33 PRK06893 DNA replication initi 91.3 0.15 3.3E-06 52.5 3.1 47 70-122 12-58 (229)
34 PF00308 Bac_DnaA: Bacterial d 90.8 0.12 2.6E-06 53.0 1.7 49 70-121 4-52 (219)
35 PRK12377 putative replication 86.5 0.53 1.2E-05 49.3 3.0 51 70-122 70-120 (248)
36 PRK06620 hypothetical protein; 86.4 0.37 7.9E-06 49.3 1.7 48 70-121 12-62 (214)
37 PRK05642 DNA replication initi 85.6 0.56 1.2E-05 48.5 2.6 46 70-122 15-64 (234)
38 PRK14086 dnaA chromosomal repl 85.0 0.42 9.2E-06 56.0 1.5 51 69-122 283-333 (617)
39 PRK09087 hypothetical protein; 84.6 0.53 1.1E-05 48.5 1.9 46 70-121 17-62 (226)
40 PRK08116 hypothetical protein; 84.3 0.62 1.4E-05 49.3 2.3 53 68-122 79-133 (268)
41 PF04851 ResIII: Type III rest 83.7 0.72 1.6E-05 44.3 2.3 35 83-121 8-43 (184)
42 PRK07952 DNA replication prote 83.6 0.83 1.8E-05 47.8 2.8 51 70-122 68-118 (244)
43 PRK14087 dnaA chromosomal repl 82.5 0.75 1.6E-05 52.3 2.2 50 70-122 111-160 (450)
44 PRK08084 DNA replication initi 81.9 0.96 2.1E-05 46.8 2.5 47 70-122 18-64 (235)
45 PRK14088 dnaA chromosomal repl 81.8 0.79 1.7E-05 52.0 2.0 51 68-122 99-149 (440)
46 TIGR02928 orc1/cdc6 family rep 81.3 1.1 2.4E-05 48.9 2.9 46 74-120 11-57 (365)
47 PRK06526 transposase; Provisio 81.2 0.79 1.7E-05 48.2 1.6 46 70-122 72-117 (254)
48 PRK10436 hypothetical protein; 81.2 0.78 1.7E-05 52.4 1.7 28 94-121 209-236 (462)
49 cd00009 AAA The AAA+ (ATPases 80.9 1.2 2.5E-05 40.4 2.5 19 102-120 18-36 (151)
50 PRK00411 cdc6 cell division co 80.7 1.3 2.8E-05 49.0 3.2 45 75-120 27-72 (394)
51 COG5008 PilU Tfp pilus assembl 80.6 1.1 2.5E-05 47.2 2.4 35 87-121 110-145 (375)
52 TIGR02538 type_IV_pilB type IV 79.9 0.82 1.8E-05 53.5 1.4 28 94-121 307-334 (564)
53 TIGR02533 type_II_gspE general 79.9 0.93 2E-05 52.1 1.7 28 94-121 233-260 (486)
54 TIGR00631 uvrb excinuclease AB 79.8 1.3 2.9E-05 52.7 3.0 46 71-121 2-47 (655)
55 TIGR00362 DnaA chromosomal rep 79.5 1.2 2.5E-05 49.9 2.3 51 68-121 104-154 (405)
56 PRK00149 dnaA chromosomal repl 79.3 1.1 2.4E-05 50.9 2.0 52 68-122 116-167 (450)
57 PRK08939 primosomal protein Dn 79.0 1.2 2.6E-05 48.2 2.1 51 71-122 124-175 (306)
58 TIGR02525 plasmid_TraJ plasmid 78.8 1.1 2.4E-05 49.7 1.9 28 93-121 140-167 (372)
59 TIGR03420 DnaA_homol_Hda DnaA 78.7 1.4 2.9E-05 44.6 2.4 46 70-121 11-56 (226)
60 PF13245 AAA_19: Part of AAA d 78.4 1.1 2.4E-05 38.1 1.4 26 95-121 3-28 (76)
61 PRK08727 hypothetical protein; 77.2 1.5 3.2E-05 45.3 2.2 45 70-122 15-60 (233)
62 cd00046 DEXDc DEAD-like helica 76.9 0.95 2.1E-05 40.5 0.5 17 106-122 3-19 (144)
63 COG1474 CDC6 Cdc6-related prot 76.8 1.9 4.2E-05 47.7 3.0 33 87-120 26-59 (366)
64 TIGR01420 pilT_fam pilus retra 76.6 1.3 2.9E-05 48.4 1.7 29 93-121 112-140 (343)
65 TIGR02524 dot_icm_DotB Dot/Icm 76.5 1.4 3E-05 48.7 1.8 24 98-121 129-152 (358)
66 PF00437 T2SE: Type II/IV secr 75.7 1.4 3.1E-05 46.1 1.6 27 94-120 115-144 (270)
67 PRK08903 DnaA regulatory inact 75.6 2.2 4.7E-05 43.4 2.9 47 70-121 14-60 (227)
68 PF01935 DUF87: Domain of unkn 75.6 1 2.2E-05 45.9 0.4 17 105-121 25-41 (229)
69 PF13401 AAA_22: AAA domain; P 75.6 0.91 2E-05 41.5 0.1 18 103-120 4-21 (131)
70 PF00270 DEAD: DEAD/DEAH box h 75.5 1.5 3.3E-05 41.7 1.6 26 94-121 7-32 (169)
71 cd01131 PilT Pilus retraction 75.4 1.1 2.4E-05 45.1 0.6 19 103-121 1-19 (198)
72 PRK08181 transposase; Validate 75.4 2.5 5.5E-05 44.8 3.4 21 100-122 105-125 (269)
73 PRK06835 DNA replication prote 74.9 1.8 4E-05 47.2 2.2 36 85-122 167-202 (329)
74 COG0593 DnaA ATPase involved i 74.9 1.7 3.6E-05 48.8 1.9 50 68-121 81-131 (408)
75 cd01129 PulE-GspE PulE/GspE Th 73.6 1.8 3.8E-05 45.8 1.6 28 94-121 71-98 (264)
76 PTZ00112 origin recognition co 73.5 2.8 6.1E-05 51.1 3.4 50 71-121 748-799 (1164)
77 COG5059 KIP1 Kinesin-like prot 73.2 0.26 5.7E-06 57.6 -5.1 117 23-151 305-428 (568)
78 PF15290 Syntaphilin: Golgi-lo 73.0 21 0.00045 37.8 9.1 37 422-458 68-106 (305)
79 COG1484 DnaC DNA replication p 72.5 2.8 6E-05 44.1 2.7 51 69-122 74-124 (254)
80 PF12846 AAA_10: AAA-like doma 72.4 1.4 3E-05 46.0 0.4 19 103-121 1-19 (304)
81 smart00382 AAA ATPases associa 70.2 1.7 3.7E-05 38.7 0.5 18 104-121 3-20 (148)
82 PF13604 AAA_30: AAA domain; P 69.7 2.6 5.7E-05 42.3 1.8 28 94-121 9-36 (196)
83 PRK13894 conjugal transfer ATP 69.4 2.4 5.2E-05 46.1 1.5 28 93-121 139-166 (319)
84 PRK06921 hypothetical protein; 69.1 3.4 7.4E-05 43.7 2.6 32 91-122 102-136 (266)
85 TIGR03015 pepcterm_ATPase puta 69.1 2.9 6.4E-05 43.3 2.1 22 99-120 39-60 (269)
86 PF05970 PIF1: PIF1-like helic 67.2 3.7 8E-05 45.3 2.5 37 80-120 3-39 (364)
87 TIGR02782 TrbB_P P-type conjug 65.4 3.2 6.9E-05 44.7 1.5 28 92-120 122-149 (299)
88 PF01695 IstB_IS21: IstB-like 64.0 4.4 9.6E-05 40.1 2.1 19 104-122 48-66 (178)
89 PF01637 Arch_ATPase: Archaeal 63.4 3.6 7.8E-05 41.0 1.4 27 94-120 11-37 (234)
90 PF00448 SRP54: SRP54-type pro 62.9 2.7 5.9E-05 42.4 0.3 17 105-121 3-19 (196)
91 PLN00020 ribulose bisphosphate 61.7 6.1 0.00013 44.0 2.8 52 68-119 109-164 (413)
92 TIGR03499 FlhF flagellar biosy 61.4 7.7 0.00017 41.3 3.5 19 104-122 195-213 (282)
93 PRK12422 chromosomal replicati 61.3 6.1 0.00013 45.0 2.8 52 68-122 105-160 (445)
94 PF13479 AAA_24: AAA domain 61.2 3.6 7.9E-05 41.8 0.9 20 103-122 3-22 (213)
95 PRK12402 replication factor C 61.1 5.9 0.00013 42.5 2.6 42 72-121 13-54 (337)
96 smart00487 DEXDc DEAD-like hel 60.1 5.5 0.00012 37.9 1.9 19 104-122 25-43 (201)
97 PHA00729 NTP-binding motif con 59.7 6.9 0.00015 40.5 2.6 31 91-121 5-35 (226)
98 PRK12723 flagellar biosynthesi 59.5 8.3 0.00018 43.2 3.4 19 103-121 174-192 (388)
99 PF00580 UvrD-helicase: UvrD/R 59.4 4.1 8.8E-05 42.8 0.9 23 99-121 9-31 (315)
100 PRK13833 conjugal transfer pro 59.3 6.1 0.00013 43.1 2.3 28 93-121 135-162 (323)
101 PF02562 PhoH: PhoH-like prote 58.8 6.2 0.00013 40.3 2.1 19 102-120 18-36 (205)
102 KOG1514|consensus 58.7 12 0.00025 44.6 4.5 57 100-168 419-475 (767)
103 TIGR00635 ruvB Holliday juncti 58.4 6.6 0.00014 41.8 2.4 44 77-121 3-48 (305)
104 PF13671 AAA_33: AAA domain; P 57.9 4.3 9.3E-05 37.6 0.7 16 105-120 1-16 (143)
105 PF00004 AAA: ATPase family as 57.8 3.6 7.9E-05 37.2 0.2 15 106-120 1-15 (132)
106 PF13191 AAA_16: AAA ATPase do 57.7 3.4 7.5E-05 39.8 0.0 22 99-120 20-41 (185)
107 PF13207 AAA_17: AAA domain; P 57.3 4.5 9.7E-05 36.5 0.7 16 105-120 1-16 (121)
108 PRK10536 hypothetical protein; 57.1 5.3 0.00011 42.2 1.3 42 69-120 50-91 (262)
109 PF01580 FtsK_SpoIIIE: FtsK/Sp 56.9 3.7 7.9E-05 41.1 0.1 17 105-121 40-56 (205)
110 cd01130 VirB11-like_ATPase Typ 56.8 5.6 0.00012 39.4 1.4 28 92-120 15-42 (186)
111 TIGR01242 26Sp45 26S proteasom 55.9 2.7 5.9E-05 46.3 -1.1 51 70-120 118-173 (364)
112 PF05496 RuvB_N: Holliday junc 55.6 14 0.00031 38.3 4.0 43 76-119 22-66 (233)
113 PRK09183 transposase/IS protei 55.4 6.7 0.00014 41.3 1.7 21 100-122 101-121 (259)
114 PRK13900 type IV secretion sys 55.1 6.7 0.00015 42.9 1.8 26 94-120 152-177 (332)
115 PF06048 DUF927: Domain of unk 55.0 9.7 0.00021 40.6 2.9 31 89-120 180-210 (286)
116 cd00268 DEADc DEAD-box helicas 54.2 7.8 0.00017 38.2 2.0 22 96-119 31-52 (203)
117 PF13086 AAA_11: AAA domain; P 53.7 6.4 0.00014 39.1 1.2 18 105-122 19-36 (236)
118 KOG0989|consensus 53.4 10 0.00022 41.0 2.7 27 94-120 47-74 (346)
119 PF00063 Myosin_head: Myosin h 53.2 9.3 0.0002 45.9 2.7 36 85-120 67-102 (689)
120 PRK13764 ATPase; Provisional 52.9 7.1 0.00015 46.1 1.6 21 101-121 255-275 (602)
121 COG4096 HsdR Type I site-speci 52.7 20 0.00044 43.4 5.2 34 87-121 169-203 (875)
122 PF07693 KAP_NTPase: KAP famil 52.2 9.5 0.00021 40.7 2.4 20 101-120 18-37 (325)
123 PTZ00424 helicase 45; Provisio 51.8 7.7 0.00017 42.8 1.6 25 94-120 58-82 (401)
124 PF06309 Torsin: Torsin; Inte 51.7 6.2 0.00013 37.2 0.7 49 105-166 55-103 (127)
125 PF00910 RNA_helicase: RNA hel 51.3 4.7 0.0001 36.3 -0.2 26 106-141 1-26 (107)
126 PF06414 Zeta_toxin: Zeta toxi 51.3 6.6 0.00014 39.3 0.9 19 102-120 14-32 (199)
127 PRK11776 ATP-dependent RNA hel 51.3 8.6 0.00019 43.6 1.9 24 95-120 35-58 (460)
128 PRK03992 proteasome-activating 51.0 4.3 9.3E-05 45.3 -0.6 50 71-120 128-182 (389)
129 PRK06547 hypothetical protein; 51.0 12 0.00026 36.9 2.7 27 94-120 6-32 (172)
130 PRK11331 5-methylcytosine-spec 50.0 9.4 0.0002 43.5 1.9 28 323-354 319-346 (459)
131 PF07724 AAA_2: AAA domain (Cd 49.8 6.6 0.00014 38.7 0.6 17 104-120 4-20 (171)
132 PRK13342 recombination factor 49.5 8.1 0.00018 43.4 1.3 41 80-121 14-54 (413)
133 PHA02544 44 clamp loader, smal 49.3 9.5 0.00021 40.7 1.8 22 100-121 39-61 (316)
134 PRK13851 type IV secretion sys 48.9 6.5 0.00014 43.2 0.5 27 94-121 154-180 (344)
135 COG4962 CpaF Flp pilus assembl 48.9 10 0.00022 41.6 1.9 27 93-120 164-190 (355)
136 PHA02244 ATPase-like protein 48.6 15 0.00033 40.8 3.2 33 86-120 104-136 (383)
137 PRK11192 ATP-dependent RNA hel 48.0 10 0.00022 42.6 1.8 25 94-120 31-55 (434)
138 TIGR00348 hsdR type I site-spe 48.0 14 0.00029 44.4 3.0 30 92-122 248-282 (667)
139 KOG0331|consensus 47.0 13 0.00028 43.0 2.4 26 310-335 323-349 (519)
140 PF13238 AAA_18: AAA domain; P 46.9 7.6 0.00016 34.9 0.5 15 106-120 1-15 (129)
141 PF07728 AAA_5: AAA domain (dy 46.8 6.8 0.00015 36.4 0.1 15 106-120 2-16 (139)
142 COG1419 FlhF Flagellar GTP-bin 46.7 11 0.00025 42.1 1.9 39 83-121 179-221 (407)
143 PRK14722 flhF flagellar biosyn 46.6 8.1 0.00018 43.0 0.7 19 103-121 137-155 (374)
144 PRK10590 ATP-dependent RNA hel 46.4 12 0.00025 42.6 2.0 25 94-120 31-55 (456)
145 PTZ00454 26S protease regulato 45.7 6.4 0.00014 44.2 -0.3 52 69-120 140-196 (398)
146 PRK00080 ruvB Holliday junctio 45.4 13 0.00029 40.2 2.1 44 77-121 24-69 (328)
147 PRK04837 ATP-dependent RNA hel 45.3 11 0.00025 42.1 1.7 24 95-120 39-62 (423)
148 CHL00081 chlI Mg-protoporyphyr 44.3 8.8 0.00019 42.3 0.6 43 70-120 13-55 (350)
149 KOG2543|consensus 44.1 8.7 0.00019 42.7 0.5 17 104-120 31-47 (438)
150 PF03215 Rad17: Rad17 cell cyc 43.8 14 0.0003 43.0 2.0 29 92-120 32-62 (519)
151 smart00242 MYSc Myosin. Large 43.4 20 0.00042 43.2 3.3 36 85-120 74-109 (677)
152 PTZ00361 26 proteosome regulat 43.3 7.2 0.00016 44.4 -0.3 49 72-120 181-234 (438)
153 PRK00771 signal recognition pa 43.1 24 0.00053 40.1 3.8 19 103-121 95-113 (437)
154 KOG0926|consensus 42.8 15 0.00032 44.3 2.1 19 102-120 270-288 (1172)
155 PF02456 Adeno_IVa2: Adenoviru 42.1 8.8 0.00019 41.5 0.1 15 106-120 90-104 (369)
156 COG1223 Predicted ATPase (AAA+ 41.7 10 0.00023 40.1 0.6 16 105-120 153-168 (368)
157 COG1201 Lhr Lhr-like helicases 41.6 17 0.00038 44.3 2.5 35 95-140 31-65 (814)
158 PRK11448 hsdR type I restricti 41.5 16 0.00035 46.3 2.3 28 94-122 425-452 (1123)
159 KOG2373|consensus 41.4 23 0.0005 38.9 3.1 34 325-360 413-446 (514)
160 PRK13341 recombination factor 41.2 16 0.00034 44.3 2.0 40 81-121 31-70 (725)
161 PRK00440 rfc replication facto 41.2 19 0.00041 38.2 2.5 21 100-120 35-55 (319)
162 TIGR02640 gas_vesic_GvpN gas v 41.1 21 0.00045 37.5 2.8 25 94-120 14-38 (262)
163 KOG0335|consensus 41.1 11 0.00025 42.9 0.8 17 106-122 114-130 (482)
164 PLN03025 replication factor C 41.0 20 0.00042 38.8 2.6 18 105-122 36-53 (319)
165 PRK10416 signal recognition pa 40.8 21 0.00046 38.8 2.8 19 103-121 114-132 (318)
166 smart00763 AAA_PrkA PrkA AAA d 40.5 29 0.00063 38.5 3.8 45 69-118 44-93 (361)
167 PRK09270 nucleoside triphospha 40.2 27 0.00058 35.8 3.3 37 84-120 13-50 (229)
168 TIGR00614 recQ_fam ATP-depende 40.2 17 0.00038 41.4 2.2 25 94-120 19-43 (470)
169 TIGR02881 spore_V_K stage V sp 40.1 11 0.00024 39.4 0.5 17 104-120 43-59 (261)
170 KOG0354|consensus 40.1 20 0.00042 43.2 2.6 25 92-119 68-92 (746)
171 KOG0727|consensus 39.9 25 0.00055 37.1 3.0 73 71-143 152-246 (408)
172 PRK04195 replication factor C 39.7 23 0.0005 40.6 3.1 29 92-120 27-56 (482)
173 PF12775 AAA_7: P-loop contain 39.6 16 0.00035 38.7 1.7 26 94-120 25-50 (272)
174 COG1219 ClpX ATP-dependent pro 39.5 13 0.00027 40.6 0.8 17 103-119 97-113 (408)
175 PF05673 DUF815: Protein of un 38.8 9.8 0.00021 39.9 -0.1 47 71-122 24-71 (249)
176 cd01384 MYSc_type_XI Myosin mo 38.6 27 0.00058 42.0 3.4 36 85-120 70-105 (674)
177 KOG1029|consensus 38.6 1.4E+02 0.0031 36.1 9.0 18 342-359 247-264 (1118)
178 PRK04328 hypothetical protein; 38.5 21 0.00045 37.2 2.3 27 92-118 9-38 (249)
179 PRK11889 flhF flagellar biosyn 38.5 28 0.00061 39.3 3.4 18 104-121 242-259 (436)
180 PF05729 NACHT: NACHT domain 38.5 14 0.00029 34.7 0.8 16 105-120 2-17 (166)
181 TIGR01243 CDC48 AAA family ATP 38.3 32 0.00069 41.7 4.1 51 70-120 174-229 (733)
182 KOG0953|consensus 38.3 21 0.00046 41.4 2.4 41 104-144 192-238 (700)
183 PRK10865 protein disaggregatio 38.2 19 0.00041 44.5 2.2 45 71-120 565-615 (857)
184 cd01378 MYSc_type_I Myosin mot 38.2 28 0.00061 41.8 3.5 35 85-120 68-103 (674)
185 PRK11634 ATP-dependent RNA hel 38.2 17 0.00037 43.3 1.7 25 94-120 36-60 (629)
186 TIGR01618 phage_P_loop phage n 38.1 12 0.00027 38.5 0.5 20 103-122 12-31 (220)
187 cd00124 MYSc Myosin motor doma 38.1 26 0.00057 42.1 3.3 35 85-120 68-103 (679)
188 PF13476 AAA_23: AAA domain; P 37.8 13 0.00029 36.0 0.7 18 103-120 19-36 (202)
189 cd01381 MYSc_type_VII Myosin m 37.8 28 0.00061 41.8 3.5 35 85-120 68-103 (671)
190 PHA02653 RNA helicase NPH-II; 37.7 26 0.00057 42.1 3.2 24 94-119 172-195 (675)
191 cd01120 RecA-like_NTPases RecA 37.3 12 0.00027 34.6 0.3 16 106-121 2-17 (165)
192 cd01385 MYSc_type_IX Myosin mo 37.2 27 0.00058 42.1 3.2 35 85-120 76-111 (692)
193 cd01383 MYSc_type_VIII Myosin 37.2 32 0.00069 41.4 3.8 35 85-120 74-109 (677)
194 PF07946 DUF1682: Protein of u 37.2 3E+02 0.0064 30.0 11.0 34 328-361 214-252 (321)
195 PF10236 DAP3: Mitochondrial r 37.2 22 0.00047 38.5 2.2 23 99-121 19-41 (309)
196 PRK01297 ATP-dependent RNA hel 37.1 17 0.00037 41.4 1.5 25 94-120 117-141 (475)
197 cd01387 MYSc_type_XV Myosin mo 37.1 31 0.00067 41.5 3.6 35 85-120 69-104 (677)
198 cd01382 MYSc_type_VI Myosin mo 36.9 26 0.00055 42.5 2.9 34 86-120 74-108 (717)
199 TIGR02237 recomb_radB DNA repa 36.6 19 0.00041 36.0 1.5 25 96-120 2-29 (209)
200 cd02021 GntK Gluconate kinase 36.4 14 0.0003 34.8 0.5 16 105-120 1-16 (150)
201 COG2256 MGS1 ATPase related to 35.9 18 0.00039 40.5 1.3 38 81-119 27-64 (436)
202 PF13555 AAA_29: P-loop contai 35.8 15 0.00032 30.3 0.5 16 105-120 25-40 (62)
203 cd01377 MYSc_type_II Myosin mo 35.6 31 0.00067 41.6 3.4 35 85-120 73-108 (693)
204 PRK05703 flhF flagellar biosyn 35.5 15 0.00032 41.6 0.6 18 104-121 222-239 (424)
205 TIGR03819 heli_sec_ATPase heli 35.4 20 0.00044 39.4 1.6 29 91-120 167-195 (340)
206 cd01123 Rad51_DMC1_radA Rad51_ 35.4 22 0.00047 36.1 1.8 29 92-120 5-36 (235)
207 PRK04537 ATP-dependent RNA hel 35.3 20 0.00044 42.1 1.7 24 95-120 40-63 (572)
208 PRK05580 primosome assembly pr 35.3 17 0.00038 43.6 1.2 35 79-120 145-179 (679)
209 cd01127 TrwB Bacterial conjuga 34.9 14 0.00031 41.4 0.4 18 103-120 42-59 (410)
210 PRK14723 flhF flagellar biosyn 34.6 34 0.00075 41.6 3.5 18 104-121 186-203 (767)
211 PF02534 T4SS-DNA_transf: Type 34.3 28 0.00061 39.5 2.7 17 104-120 45-61 (469)
212 TIGR02902 spore_lonB ATP-depen 34.3 24 0.00051 41.2 2.0 41 71-119 62-102 (531)
213 KOG3859|consensus 34.2 22 0.00047 38.0 1.5 34 87-120 25-59 (406)
214 cd01126 TraG_VirD4 The TraG/Tr 34.0 20 0.00044 39.6 1.4 16 106-121 2-17 (384)
215 PRK06995 flhF flagellar biosyn 34.0 16 0.00035 42.1 0.6 18 104-121 257-274 (484)
216 TIGR02788 VirB11 P-type DNA tr 33.9 24 0.00053 38.0 1.9 28 92-120 134-161 (308)
217 PF13173 AAA_14: AAA domain 33.9 17 0.00037 33.5 0.6 17 104-120 3-19 (128)
218 PRK06696 uridine kinase; Valid 33.8 36 0.00078 34.6 3.1 35 85-120 5-39 (223)
219 TIGR03158 cas3_cyano CRISPR-as 33.8 28 0.0006 38.4 2.4 26 95-120 6-31 (357)
220 PF00735 Septin: Septin; Inte 33.6 17 0.00036 38.9 0.6 19 100-118 1-19 (281)
221 PRK14974 cell division protein 33.5 46 0.001 36.5 4.0 19 103-121 140-158 (336)
222 cd01380 MYSc_type_V Myosin mot 33.5 33 0.00071 41.4 3.1 34 86-120 69-103 (691)
223 PRK00131 aroK shikimate kinase 33.5 19 0.00041 34.3 0.9 17 104-120 5-21 (175)
224 PLN00206 DEAD-box ATP-dependen 33.1 30 0.00064 40.2 2.6 25 94-120 151-175 (518)
225 PRK07261 topology modulation p 32.6 19 0.0004 35.3 0.7 15 106-120 3-17 (171)
226 PRK12724 flagellar biosynthesi 32.5 38 0.00082 38.4 3.2 19 103-121 223-241 (432)
227 PRK11057 ATP-dependent DNA hel 32.5 29 0.00062 41.1 2.4 25 94-120 33-57 (607)
228 TIGR02746 TraC-F-type type-IV 32.5 16 0.00036 44.4 0.4 19 103-121 430-448 (797)
229 TIGR00376 DNA helicase, putati 31.6 27 0.00059 41.7 2.0 19 104-122 174-192 (637)
230 smart00787 Spc7 Spc7 kinetocho 31.5 3.9E+02 0.0084 29.1 10.6 15 311-327 94-108 (312)
231 TIGR03744 traC_PFL_4706 conjug 31.5 18 0.00039 44.9 0.5 21 101-121 473-493 (893)
232 KOG1029|consensus 31.2 3E+02 0.0066 33.5 10.1 19 636-654 872-890 (1118)
233 COG3829 RocR Transcriptional r 31.1 29 0.00062 40.3 2.0 43 68-116 239-281 (560)
234 PRK10917 ATP-dependent DNA hel 30.6 36 0.00078 40.9 2.8 21 100-120 279-299 (681)
235 PHA02624 large T antigen; Prov 30.6 39 0.00085 40.0 3.0 27 94-120 420-448 (647)
236 TIGR01817 nifA Nif-specific re 30.5 26 0.00057 40.7 1.6 45 70-120 192-236 (534)
237 PRK10820 DNA-binding transcrip 30.4 26 0.00057 40.7 1.6 46 69-120 199-244 (520)
238 TIGR01359 UMP_CMP_kin_fam UMP- 30.3 22 0.00047 34.6 0.7 14 106-119 2-15 (183)
239 TIGR02903 spore_lon_C ATP-depe 30.2 30 0.00065 41.1 2.0 42 71-120 151-192 (615)
240 cd01379 MYSc_type_III Myosin m 29.9 41 0.00088 40.3 3.1 35 85-120 68-103 (653)
241 PRK06067 flagellar accessory p 29.9 34 0.00075 34.9 2.2 29 92-120 11-42 (234)
242 TIGR01389 recQ ATP-dependent D 29.8 31 0.00067 40.6 2.1 25 94-120 21-45 (591)
243 TIGR03117 cas_csf4 CRISPR-asso 29.7 35 0.00076 40.7 2.4 33 82-120 1-33 (636)
244 PRK09361 radB DNA repair and r 29.2 41 0.00088 34.0 2.6 29 92-120 9-40 (225)
245 COG1125 OpuBA ABC-type proline 29.2 21 0.00046 37.8 0.5 14 107-120 31-44 (309)
246 cd01386 MYSc_type_XVIII Myosin 29.1 41 0.00088 41.1 2.9 35 85-120 68-103 (767)
247 PF02367 UPF0079: Uncharacteri 29.1 44 0.00095 31.3 2.5 29 91-121 5-33 (123)
248 PRK12726 flagellar biosynthesi 28.9 22 0.00048 39.8 0.6 20 103-122 206-225 (407)
249 TIGR01313 therm_gnt_kin carboh 28.8 19 0.00042 34.4 0.1 14 106-119 1-14 (163)
250 cd00464 SK Shikimate kinase (S 28.8 22 0.00049 33.2 0.6 16 105-120 1-16 (154)
251 PRK15429 formate hydrogenlyase 28.8 31 0.00067 41.5 1.8 42 71-118 373-414 (686)
252 PRK01172 ski2-like helicase; P 28.3 35 0.00077 40.8 2.2 21 97-119 33-53 (674)
253 TIGR02322 phosphon_PhnN phosph 28.3 23 0.00049 34.4 0.5 16 105-120 3-18 (179)
254 PF12774 AAA_6: Hydrolytic ATP 28.2 34 0.00073 35.5 1.8 36 107-142 36-82 (231)
255 CHL00181 cbbX CbbX; Provisiona 28.2 34 0.00074 36.6 1.8 15 106-120 62-76 (287)
256 KOG1803|consensus 28.1 43 0.00094 39.3 2.7 26 95-121 194-219 (649)
257 PRK08118 topology modulation p 28.1 25 0.00054 34.3 0.7 13 106-118 4-16 (167)
258 PRK14721 flhF flagellar biosyn 28.1 25 0.00054 39.8 0.9 19 103-121 191-209 (420)
259 TIGR03689 pup_AAA proteasome A 28.1 18 0.0004 41.9 -0.2 15 106-120 219-233 (512)
260 PF00931 NB-ARC: NB-ARC domain 28.0 55 0.0012 34.1 3.4 29 92-120 6-36 (287)
261 cd01428 ADK Adenylate kinase ( 27.8 25 0.00055 34.3 0.7 15 106-120 2-16 (194)
262 PF08317 Spc7: Spc7 kinetochor 27.8 5.3E+02 0.011 28.1 11.0 8 319-326 105-112 (325)
263 PHA01747 putative ATP-dependen 27.8 35 0.00076 38.0 1.9 33 88-120 175-207 (425)
264 PRK15424 propionate catabolism 27.7 34 0.00074 40.0 1.8 43 70-118 215-257 (538)
265 cd01850 CDC_Septin CDC/Septin. 27.3 27 0.00058 37.1 0.8 21 100-120 1-21 (276)
266 PRK10947 global DNA-binding tr 27.3 2.7E+02 0.0058 26.7 7.4 55 424-479 11-68 (135)
267 COG1198 PriA Primosomal protei 27.1 41 0.00089 40.7 2.4 58 79-142 199-270 (730)
268 PRK08233 hypothetical protein; 27.0 28 0.0006 33.6 0.9 16 105-120 5-20 (182)
269 TIGR00064 ftsY signal recognit 27.0 28 0.0006 37.0 0.9 18 104-121 73-90 (272)
270 PF15079 DUF4546: Domain of un 26.9 1.1E+02 0.0023 30.3 4.7 31 444-479 50-80 (205)
271 PRK06217 hypothetical protein; 26.8 26 0.00056 34.4 0.6 15 106-120 4-18 (183)
272 PRK14729 miaA tRNA delta(2)-is 26.8 30 0.00065 37.4 1.1 15 104-118 5-19 (300)
273 PF00485 PRK: Phosphoribulokin 26.6 25 0.00055 34.9 0.5 15 106-120 2-16 (194)
274 COG0630 VirB11 Type IV secreto 26.6 23 0.0005 38.4 0.2 19 103-121 143-161 (312)
275 PF04568 IATP: Mitochondrial A 26.5 3.6E+02 0.0079 24.4 7.8 28 448-476 72-99 (100)
276 TIGR00602 rad24 checkpoint pro 26.5 33 0.00071 40.9 1.5 31 613-649 544-574 (637)
277 TIGR01425 SRP54_euk signal rec 26.5 50 0.0011 37.5 2.9 19 103-121 100-118 (429)
278 cd02020 CMPK Cytidine monophos 26.4 28 0.0006 32.1 0.7 15 106-120 2-16 (147)
279 TIGR00929 VirB4_CagE type IV s 26.3 25 0.00054 42.7 0.5 19 103-121 434-452 (785)
280 PRK13767 ATP-dependent helicas 26.1 36 0.00078 42.2 1.8 23 96-120 42-64 (876)
281 TIGR01650 PD_CobS cobaltochela 26.0 33 0.00072 37.5 1.3 25 94-120 57-81 (327)
282 PF06745 KaiC: KaiC; InterPro 25.9 41 0.00088 34.1 1.9 37 94-143 7-46 (226)
283 TIGR02329 propionate_PrpR prop 25.8 36 0.00077 39.7 1.6 44 70-119 208-251 (526)
284 cd01983 Fer4_NifH The Fer4_Nif 25.7 28 0.0006 29.1 0.5 16 106-121 2-17 (99)
285 TIGR02880 cbbX_cfxQ probable R 25.6 26 0.00056 37.4 0.4 16 105-120 60-75 (284)
286 PRK11664 ATP-dependent RNA hel 25.5 46 0.00099 41.0 2.5 27 92-120 11-37 (812)
287 TIGR03881 KaiC_arch_4 KaiC dom 25.3 48 0.001 33.6 2.2 28 93-120 7-37 (229)
288 PF11221 Med21: Subunit 21 of 25.2 5.7E+02 0.012 24.4 9.5 34 444-478 107-140 (144)
289 TIGR01241 FtsH_fam ATP-depende 25.2 26 0.00057 40.3 0.4 73 70-143 51-145 (495)
290 PF10412 TrwB_AAD_bind: Type I 25.2 24 0.00053 39.3 0.1 18 104-121 16-33 (386)
291 PTZ00110 helicase; Provisional 25.2 40 0.00087 39.4 1.9 24 95-120 161-184 (545)
292 TIGR03877 thermo_KaiC_1 KaiC d 25.1 51 0.0011 33.9 2.5 26 93-118 8-36 (237)
293 PTZ00266 NIMA-related protein 25.0 3.6E+02 0.0078 34.2 10.0 8 540-547 660-667 (1021)
294 cd01394 radB RadB. The archaea 25.0 51 0.0011 33.1 2.4 28 93-120 6-36 (218)
295 PF04548 AIG1: AIG1 family; I 25.0 28 0.0006 35.3 0.4 16 105-120 2-17 (212)
296 PRK04040 adenylate kinase; Pro 25.0 32 0.0007 34.3 0.9 16 105-120 4-19 (188)
297 CHL00176 ftsH cell division pr 24.9 27 0.00058 41.7 0.3 16 105-120 218-233 (638)
298 KOG0340|consensus 24.8 73 0.0016 35.3 3.5 28 93-122 36-63 (442)
299 COG0467 RAD55 RecA-superfamily 24.7 46 0.001 34.6 2.0 24 95-118 12-38 (260)
300 TIGR02173 cyt_kin_arch cytidyl 24.6 33 0.00071 32.7 0.8 16 105-120 2-17 (171)
301 PF10923 DUF2791: P-loop Domai 24.5 59 0.0013 36.8 2.9 39 82-121 29-67 (416)
302 smart00488 DEXDc2 DEAD-like he 24.5 49 0.0011 35.3 2.3 36 79-120 9-44 (289)
303 smart00489 DEXDc3 DEAD-like he 24.5 49 0.0011 35.3 2.3 36 79-120 9-44 (289)
304 COG5271 MDN1 AAA ATPase contai 24.3 73 0.0016 42.3 3.8 48 67-120 1820-1867(4600)
305 cd01124 KaiC KaiC is a circadi 24.3 33 0.00071 33.2 0.8 15 106-120 2-16 (187)
306 COG0552 FtsY Signal recognitio 24.1 35 0.00075 37.4 1.0 20 101-120 137-156 (340)
307 PF08477 Miro: Miro-like prote 24.1 34 0.00074 30.3 0.8 15 106-120 2-16 (119)
308 PRK13853 type IV secretion sys 24.1 26 0.00056 42.9 0.0 18 103-120 426-443 (789)
309 cd00820 PEPCK_HprK Phosphoenol 24.1 32 0.0007 31.4 0.7 17 104-120 16-32 (107)
310 PRK06762 hypothetical protein; 24.1 34 0.00073 32.7 0.8 14 105-118 4-17 (166)
311 PRK11034 clpA ATP-dependent Cl 24.0 64 0.0014 39.4 3.3 18 103-120 488-505 (758)
312 TIGR02030 BchI-ChlI magnesium 24.0 48 0.001 36.4 2.1 28 93-120 15-42 (337)
313 KOG0739|consensus 24.0 43 0.00092 36.4 1.6 49 72-120 131-183 (439)
314 TIGR01360 aden_kin_iso1 adenyl 24.0 36 0.00077 33.0 1.0 16 105-120 5-20 (188)
315 TIGR00643 recG ATP-dependent D 23.9 56 0.0012 38.9 2.8 17 104-120 257-273 (630)
316 TIGR02767 TraG-Ti Ti-type conj 23.9 36 0.00079 40.5 1.2 17 104-120 212-228 (623)
317 cd01393 recA_like RecA is a b 23.7 60 0.0013 32.6 2.6 29 92-120 5-36 (226)
318 PRK13873 conjugal transfer ATP 23.7 24 0.00051 43.4 -0.4 18 104-121 442-459 (811)
319 PRK10867 signal recognition pa 23.7 75 0.0016 36.2 3.6 19 103-121 100-118 (433)
320 COG5019 CDC3 Septin family pro 23.6 45 0.00097 36.9 1.7 18 100-117 20-37 (373)
321 cd02023 UMPK Uridine monophosp 23.6 29 0.00063 34.4 0.3 15 106-120 2-16 (198)
322 PRK14961 DNA polymerase III su 23.4 59 0.0013 35.8 2.7 41 72-120 14-55 (363)
323 KOG0987|consensus 23.3 73 0.0016 37.3 3.5 36 80-120 119-154 (540)
324 PRK14970 DNA polymerase III su 23.2 59 0.0013 35.6 2.6 41 72-120 15-56 (367)
325 PF15254 CCDC14: Coiled-coil d 23.1 7.9E+02 0.017 30.2 11.6 19 342-360 364-382 (861)
326 PRK14962 DNA polymerase III su 22.9 55 0.0012 37.7 2.4 41 72-120 12-53 (472)
327 TIGR03263 guanyl_kin guanylate 22.9 41 0.00088 32.6 1.2 17 104-120 2-18 (180)
328 PRK14531 adenylate kinase; Pro 22.8 36 0.00078 33.5 0.7 15 105-119 4-18 (183)
329 PTZ00014 myosin-A; Provisional 22.7 73 0.0016 39.3 3.4 21 100-120 180-200 (821)
330 TIGR03238 dnd_assoc_3 dnd syst 22.7 44 0.00096 38.5 1.5 20 103-122 32-51 (504)
331 PRK00300 gmk guanylate kinase; 22.7 34 0.00075 33.9 0.6 18 103-120 5-22 (205)
332 cd02025 PanK Pantothenate kina 22.6 24 0.00052 36.2 -0.6 13 108-120 4-16 (220)
333 PF14532 Sigma54_activ_2: Sigm 22.6 38 0.00083 31.6 0.9 22 99-120 17-38 (138)
334 KOG0990|consensus 22.6 87 0.0019 34.3 3.6 62 105-172 64-147 (360)
335 PF13851 GAS: Growth-arrest sp 22.5 5.7E+02 0.012 25.9 9.4 23 436-458 120-142 (201)
336 KOG0579|consensus 22.4 5.4E+02 0.012 31.1 9.9 9 459-467 971-979 (1187)
337 COG0419 SbcC ATPase involved i 22.3 51 0.0011 41.0 2.1 35 102-138 24-65 (908)
338 PRK05342 clpX ATP-dependent pr 22.3 75 0.0016 35.9 3.2 17 104-120 109-125 (412)
339 TIGR02397 dnaX_nterm DNA polym 22.3 64 0.0014 34.9 2.7 35 82-120 18-53 (355)
340 cd02027 APSK Adenosine 5'-phos 22.2 34 0.00074 32.6 0.5 15 106-120 2-16 (149)
341 TIGR00231 small_GTP small GTP- 22.2 32 0.0007 31.0 0.3 16 105-120 3-18 (161)
342 TIGR02639 ClpA ATP-dependent C 22.2 69 0.0015 38.9 3.1 38 82-119 458-500 (731)
343 PRK13721 conjugal transfer ATP 22.1 33 0.00072 42.3 0.4 19 103-121 449-467 (844)
344 PF01745 IPT: Isopentenyl tran 21.9 38 0.00083 35.0 0.7 16 105-120 3-18 (233)
345 PRK13891 conjugal transfer pro 21.8 28 0.0006 43.1 -0.3 18 103-120 488-505 (852)
346 TIGR03878 thermo_KaiC_2 KaiC d 21.8 58 0.0013 34.1 2.1 16 103-118 36-51 (259)
347 TIGR03345 VI_ClpV1 type VI sec 21.7 80 0.0017 39.1 3.6 17 104-120 597-613 (852)
348 PRK06305 DNA polymerase III su 21.6 50 0.0011 37.8 1.7 41 72-120 15-56 (451)
349 PRK12727 flagellar biosynthesi 21.6 37 0.0008 39.7 0.6 18 104-121 351-368 (559)
350 PRK11608 pspF phage shock prot 21.5 52 0.0011 35.8 1.7 41 73-119 5-45 (326)
351 TIGR00763 lon ATP-dependent pr 21.3 42 0.00091 41.0 1.0 39 82-120 324-364 (775)
352 TIGR03880 KaiC_arch_3 KaiC dom 21.3 64 0.0014 32.6 2.2 26 94-119 4-32 (224)
353 PRK00254 ski2-like helicase; P 21.2 54 0.0012 39.7 1.9 21 98-120 36-56 (720)
354 TIGR01074 rep ATP-dependent DN 21.0 42 0.00091 40.0 1.0 21 102-122 13-33 (664)
355 cd03274 ABC_SMC4_euk Eukaryoti 21.0 39 0.00085 34.3 0.6 16 105-120 27-42 (212)
356 KOG0729|consensus 20.9 48 0.001 35.4 1.2 15 105-119 213-227 (435)
357 KOG0651|consensus 20.9 24 0.00052 38.4 -1.0 54 66-119 124-182 (388)
358 PRK15483 type III restriction- 20.8 33 0.00072 42.7 0.1 21 101-122 58-78 (986)
359 PRK13830 conjugal transfer pro 20.8 30 0.00065 42.6 -0.3 19 103-121 456-474 (818)
360 COG0324 MiaA tRNA delta(2)-iso 20.7 47 0.001 36.0 1.2 16 105-120 5-20 (308)
361 PRK13822 conjugal transfer cou 20.7 46 0.001 39.8 1.2 18 103-120 224-241 (641)
362 PRK14532 adenylate kinase; Pro 20.5 46 0.001 32.6 1.0 15 105-119 2-16 (188)
363 PRK06731 flhF flagellar biosyn 20.5 40 0.00088 35.8 0.6 18 104-121 76-93 (270)
364 PRK00091 miaA tRNA delta(2)-is 20.5 47 0.001 36.0 1.1 16 104-119 5-20 (307)
365 PRK13850 type IV secretion sys 20.3 62 0.0013 38.9 2.2 20 101-120 137-156 (670)
366 PRK05022 anaerobic nitric oxid 20.3 54 0.0012 38.0 1.6 43 72-120 185-227 (509)
367 COG1136 SalX ABC-type antimicr 20.3 40 0.00086 35.0 0.5 16 105-120 33-48 (226)
368 TIGR00235 udk uridine kinase. 20.3 44 0.00096 33.5 0.8 17 104-120 7-23 (207)
369 TIGR02768 TraA_Ti Ti-type conj 20.3 57 0.0012 39.8 1.9 26 95-121 361-386 (744)
370 TIGR00382 clpX endopeptidase C 20.2 41 0.00089 38.0 0.6 17 104-120 117-133 (413)
371 TIGR01243 CDC48 AAA family ATP 20.1 53 0.0011 39.8 1.6 15 106-120 490-504 (733)
372 CHL00195 ycf46 Ycf46; Provisio 20.1 39 0.00084 39.1 0.4 17 104-120 260-276 (489)
373 PRK14527 adenylate kinase; Pro 20.1 47 0.001 32.8 0.9 17 104-120 7-23 (191)
374 cd03279 ABC_sbcCD SbcCD and ot 20.1 43 0.00093 33.8 0.7 18 103-120 28-45 (213)
375 PRK09302 circadian clock prote 20.1 66 0.0014 37.1 2.3 28 92-119 17-47 (509)
376 KOG1547|consensus 20.0 1.2E+02 0.0026 32.0 3.8 21 99-119 42-62 (336)
377 PHA02530 pseT polynucleotide k 20.0 45 0.00097 35.3 0.8 17 104-120 3-19 (300)
No 1
>KOG0247|consensus
Probab=100.00 E-value=4.8e-113 Score=944.96 Aligned_cols=594 Identities=39% Similarity=0.626 Sum_probs=450.5
Q ss_pred CCCCCCCCCEEEEEEecCCC-CCCCCceEEEecCcEEEEcCCCCC-CCC--cCCCcceEEEecEEeCCCCChHHHHHHhh
Q psy2748 16 SQNNGSSDPLQVFCRIRPMD-NSYDESCISVVSDTTVQLTPPDGS-NPR--YFNNKEVQYVFKKIFNVDVGQKQVYSEVA 91 (690)
Q Consensus 16 ~~~~~~~~~V~V~~RvRP~~-~~e~~~~i~v~~~~tv~l~~p~~~-~~r--~~~~~~~~f~Fd~VF~~~asQ~evF~~v~ 91 (690)
..+.+.+++|.||||+||+. ..++.+|+.|+++.+|++..|.+. ..+ +++..++.|.|.+||+|+++|.+||+.++
T Consensus 24 ~~S~~~~d~v~v~~rvrP~~~~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~ 103 (809)
T KOG0247|consen 24 GASCESKDPVLVVCRVRPLSDASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTV 103 (809)
T ss_pred ccchhhhcchheeEeecCCCCCccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHh
Confidence 35678899999999999988 678999999999999999988887 444 77888999999999999999999999999
Q ss_pred HHHHHHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHH--
Q psy2748 92 HPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILL-- 169 (690)
Q Consensus 92 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll-- 169 (690)
.|+|.+++.|.|++||+||+|||||||||+|++.++||+||||+.||++|+.+++++++|+|...+.|++..+.+++|
T Consensus 104 ~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~l 183 (809)
T KOG0247|consen 104 APLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQL 183 (809)
T ss_pred HHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCCCCCCCccCCCCCCCccccc-cccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccc
Q psy2748 170 QEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIK-DASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLN 248 (690)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~ 248 (690)
.|....++ +...+. ..+.++++++..+. ......+++.+..|+|||||+|||||+|||||++.+.. .....
T Consensus 184 kr~~~~nd----~~~ts~-~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q---~~~~~ 255 (809)
T KOG0247|consen 184 KREAMLND----RKSTSK-AHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQ---GKLQK 255 (809)
T ss_pred hhhhcccc----ccCcch-hhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhcccccc---chhhh
Confidence 44444432 222221 23345667776665 23333447899999999999999999999999988642 11122
Q ss_pred cceEeecCCCCeEEeeeEEEEecCchhhhhh-------------------------------------------------
Q psy2748 249 NRLIREDGDKNMFVHGVNEIEVTTPDEAFQS------------------------------------------------- 279 (690)
Q Consensus 249 ~~~ired~~~~~~V~gl~~v~V~s~eea~~~------------------------------------------------- 279 (690)
.+++++|.+++|||+|+++|+|.+.+||+++
T Consensus 256 ~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsL 335 (809)
T KOG0247|consen 256 LKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSL 335 (809)
T ss_pred hhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeee
Confidence 4789999999999999999999999999998
Q ss_pred ---------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCC
Q psy2748 280 ---------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNP 338 (690)
Q Consensus 280 ---------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP 338 (690)
|+|||.|||+||+||++|+++|..+.+++||||||||||+|++||.|.++++|||||+|
T Consensus 336 vDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp 415 (809)
T KOG0247|consen 336 VDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNP 415 (809)
T ss_pred eecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCC
Confidence 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhhHHHHHhhhhceeeccCCCCcCCCCCCchhhhhhHHHHHHHH-------HHHhhhhhhhhhccCCccccch
Q psy2748 339 RVEDYDENLAVMKFAEMSQEVQISKALPSRLDFGLTPGRRKFNEASKKMRE-------ILNNEKKMESLASAMPLIDSGV 411 (690)
Q Consensus 339 ~~~~~~ETl~TLrFA~rak~I~~~~~v~~~~~~~~~~~rr~~n~~~ke~~~-------~l~~~~~~~~~~~~~~~~~~e~ 411 (690)
.+++|+|+|++|+||++|+.|.+.++++...+.++.|+++..++...+.-. -+.+....+...... ..+.+.
T Consensus 416 ~~e~YdEnl~vlkFaeiaq~v~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~D~~l~e~~~~~~~~~~~-~~~~~~ 494 (809)
T KOG0247|consen 416 KAEDYDENLNVLKFAEIAQEVEVARPVIKKQPSGLTPGREFSNQSTCELGNSTLMEDEGLREIPDLPTFEEQD-KNDKET 494 (809)
T ss_pred chhhHHHHHHHHHHHHhcccccccCcccccCCcccCcccccccccccccCCcchhhcccccccCCchhHhhhh-hhhHHH
Confidence 999999999999999999999999999888888888877765543211100 000000000000000 000000
Q ss_pred h------------------hhcccccH-------------------------HHHHHHHHHHHHHHH-------------
Q psy2748 412 L------------------YRLRKDVH-------------------------VERLRMMKERQEEKT------------- 435 (690)
Q Consensus 412 ~------------------~~~~~~~~-------------------------ee~~~~L~~el~e~e------------- 435 (690)
+ .+....++ ++.+.++.+++.+..
T Consensus 495 l~~llee~~~~~~~~~~~~l~~~~~~k~~~~~q~~~~~~~~~~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~ 574 (809)
T KOG0247|consen 495 LDQLLEELEKRILLRTKEILQNNKSLKEKECRQKLMNAQLESQMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYSIEIL 574 (809)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Confidence 0 00111110 122222222221111
Q ss_pred -----HHHH---------------------HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy2748 436 -----KATK---------------------SKLSQKFQ---------SKMQAQAETYESKLRHNEKKVIRKVKNLIDSQL 480 (690)
Q Consensus 436 -----~~~k---------------------~~le~~~~---------~kl~~~~ek~e~kl~~~eek~L~qlk~il~~~~ 480 (690)
..+. .+.+++.. ..+++...++.++||.++|+ |+++.+||+-.
T Consensus 575 E~~~~~~~i~~l~~el~eq~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~~~~l~~~~e~-l~~~~~~i~~~- 652 (809)
T KOG0247|consen 575 ESTEYEEEIEALDQELEEQKMELQQKFSEKKKAMAKVRGILANTSPECSVAAKLLELQSKLWFKDEK-LKHLTAIIQTP- 652 (809)
T ss_pred hcchhhhhhHHHHHHHHhhhHHHHhhccchhHHHhhhccccCCCchhhhHHHHHHHHHHHhcccHHH-HHHhhcccCCC-
Confidence 0000 00000110 12333333344889999999 99999999762
Q ss_pred CCCCCCC----CCCCCCCCCCCCCCcccccccCccccCCCCCCccCCCccccccCCCCCCCCccccccCCCCCCCCCCcc
Q psy2748 481 PDTSSLS----SCSSGSAPPIPTPRTITSDYNTRTTRSGKAGDVQSTPNVTARRNAPAPPRSTRRRSRSAGPPTNPAGTW 556 (690)
Q Consensus 481 ~~~p~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~rrs~sa~~~~~~~~~w 556 (690)
.+|-.. ...++... ..++++... +.-+.+..-.| ++ ++|+++.|||||+||| ++|
T Consensus 653 -p~p~~~~~~~~~~e~d~~-~~t~rt~~~--------~~~~~S~~~~~----~~-~~~~~~~rqrrs~sa~------~~~ 711 (809)
T KOG0247|consen 653 -PPPYQTPGRNPLFEKDRE-ATTSRTVMS--------SSVPQSLEFQP----GH-NAPAYRLRQRRSRSAG------DRL 711 (809)
T ss_pred -CCCcCCcccccccccchh-hhhhhhhhc--------CCCchhhhhcc----cc-ccchhhhHhhhccccc------cch
Confidence 222111 11111111 011011000 00011222233 24 7899999999999998 999
Q ss_pred ccccCCCCcCCCCCCcccccCCCC-CceeeeccCCccccccccccceeeeeeccCCCCceeeEEEeeccCCCCeeecCCC
Q psy2748 557 LHHTPGQVLLNTPHGTVFQPTGWK-KRKSVTALTDVKDIVDPKLAKYSLMTQEPNTDGEMETHLFKVNYLDGDVLPTVGG 635 (690)
Q Consensus 557 ~~h~p~~~~~~~~~~tv~qp~~~~-~~~~v~~~~~~k~~~~~k~~~y~l~~qe~~~~ge~eTkl~K~~~~~gdv~~t~gg 635 (690)
+||+|.+. ||+||||||+ .+ +++.+..++. +.| +|+.+|||+|||+|+||+|+||||| |+||||+||
T Consensus 712 ~~h~~~~~---vq~~tv~q~~-~~~~~i~~~~~~~-~~L--~~~~kyrl~~q~~~~~g~~~tk~~k-----gn~lpt~~g 779 (809)
T KOG0247|consen 712 LDHQPLHR---VQTGTVLQPR-VPANAIRTQKPEM-KKL--NKSGKYRLTHQEVDQDGNIETKIVK-----GNVLPTVGG 779 (809)
T ss_pred hcccchhh---ccccceeccc-cchhhhhhhhHHH-HHH--hhccceecccccccccCcccccccc-----CcccccCCC
Confidence 99999999 9999999999 66 5555555555 999 8999999999999999999999999 999999999
Q ss_pred CeeEEecccccccccCCC
Q psy2748 636 GAQVVFNELETLRQTSPL 653 (690)
Q Consensus 636 g~~v~f~d~e~Lkq~sp~ 653 (690)
|++|+|+|||+|+|+||.
T Consensus 780 gs~v~f~d~e~l~~~sp~ 797 (809)
T KOG0247|consen 780 GSSVDFLDIERLKQESPS 797 (809)
T ss_pred ccceecccHHHHhcCCCC
Confidence 999999999999999998
No 2
>KOG0243|consensus
Probab=100.00 E-value=1.3e-66 Score=599.96 Aligned_cols=288 Identities=28% Similarity=0.510 Sum_probs=237.0
Q ss_pred CCCCCEEEEEEecCCCCCCCC-ce---EEEec-CcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHH
Q psy2748 20 GSSDPLQVFCRIRPMDNSYDE-SC---ISVVS-DTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPL 94 (690)
Q Consensus 20 ~~~~~V~V~~RvRP~~~~e~~-~~---i~v~~-~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~pl 94 (690)
+..-+|+|+||+||++..+.. .| |.+.+ ..-|.+...-. +....+.|+||+||||++.|.+||+.++.|+
T Consensus 46 e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~-----sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~ 120 (1041)
T KOG0243|consen 46 EKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIA-----SKQIDKTFTFDKVFGPESQQEDLYDQAVSPI 120 (1041)
T ss_pred CCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccc-----cccccceeecceeeCcchhHHHHHHHHHHHH
Confidence 445789999999999876532 22 22223 22355543311 1124678999999999999999999999999
Q ss_pred HHHHhccCCeEEEEecccCCCCeeecCC--------CCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHH
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTMNG--------TNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVD 166 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm~G--------~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~ 166 (690)
|+.|+.|||||||||||||+||||||+| .+.++|||||++.+||..+..
T Consensus 121 i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~----------------------- 177 (1041)
T KOG0243|consen 121 IKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEA----------------------- 177 (1041)
T ss_pred HHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHh-----------------------
Confidence 9999999999999999999999999999 567899999999999998865
Q ss_pred HHHHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCC-cccc
Q psy2748 167 ILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGN-NARI 245 (690)
Q Consensus 167 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~-~~~~ 245 (690)
.+..|+|.|||+|+|||.++|||++..... ..+.
T Consensus 178 ---------------------------------------------~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~ 212 (1041)
T KOG0243|consen 178 ---------------------------------------------QGAEYSVKVSFLELYNEELTDLLASEDTSDKKLRI 212 (1041)
T ss_pred ---------------------------------------------cCCeEEEEEEehhhhhHHHHHhcCCcccccccccc
Confidence 234799999999999999999999876531 1111
Q ss_pred ccccceEeecCCCCeEEeeeEEEEecCchhhhhh----------------------------------------------
Q psy2748 246 QLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQS---------------------------------------------- 279 (690)
Q Consensus 246 ~~~~~~ired~~~~~~V~gl~~v~V~s~eea~~~---------------------------------------------- 279 (690)
.-...+. +..++++|.|+.++.|.++.|.+++
T Consensus 213 k~~~~~~--~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~G 290 (1041)
T KOG0243|consen 213 KDDSTIV--DGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIG 290 (1041)
T ss_pred ccCCccc--CCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhc
Confidence 1111111 7789999999999999999999988
Q ss_pred -------------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEE
Q psy2748 280 -------------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIV 334 (690)
Q Consensus 280 -------------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIv 334 (690)
||.||+||+|||+||.||.++. .|||||+|||||||||||||..||+||+
T Consensus 291 KLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s-----~HIPYRESKLTRLLQDSLGGkTKT~iIA 365 (1041)
T KOG0243|consen 291 KLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHS-----GHIPYRESKLTRLLQDSLGGKTKTCIIA 365 (1041)
T ss_pred ccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccC-----CCCCchHHHHHHHHHHHhCCCceeEEEE
Confidence 7899999999999999999976 8999999999999999999999999999
Q ss_pred EeCCCCCCHHHHhhHHHHHhhhhceeeccCCCCcCCCCCCchhhhhhHHHHHHHHHHHhhhh
Q psy2748 335 CVNPRVEDYDENLAVMKFAEMSQEVQISKALPSRLDFGLTPGRRKFNEASKKMREILNNEKK 396 (690)
Q Consensus 335 cVsP~~~~~~ETl~TLrFA~rak~I~~~~~v~~~~~~~~~~~rr~~n~~~ke~~~~l~~~~~ 396 (690)
||||+..+++|||+||.||.||++|+|+|.+|... .....+|++.++++.++.
T Consensus 366 TiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl---------~K~~llKd~~~EIerLK~ 418 (1041)
T KOG0243|consen 366 TISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKL---------MKKTLLKDLYEEIERLKR 418 (1041)
T ss_pred EeCCCcccHHHHHHHHHHHHHhhhccCCCccchHH---------HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988643 133445666555555543
No 3
>KOG0245|consensus
Probab=100.00 E-value=4.8e-66 Score=584.48 Aligned_cols=352 Identities=27% Similarity=0.404 Sum_probs=275.5
Q ss_pred CCCEEEEEEecCCCCCC---CCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCC-------CCChHHHHHHhh
Q psy2748 22 SDPLQVFCRIRPMDNSY---DESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNV-------DVGQKQVYSEVA 91 (690)
Q Consensus 22 ~~~V~V~~RvRP~~~~e---~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~-------~asQ~evF~~v~ 91 (690)
...|+|.|||||++..| +..||....++++++..|.+. .....|+||+.|++ .++|..||++++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~------k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg 76 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGS------KDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLG 76 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCc------ccCCceecceeeecCCCCCCchhhHHHHHHHHh
Confidence 35699999999999765 557888888888877766653 22334999999976 478999999999
Q ss_pred HHHHHHHhccCCeEEEEecccCCCCeeecCCCC--CCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHH
Q psy2748 92 HPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTN--SDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILL 169 (690)
Q Consensus 92 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~--~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll 169 (690)
.++++.++.|||+||||||||||||||||+|.. +++|||||++++||..|...+
T Consensus 77 ~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq------------------------ 132 (1221)
T KOG0245|consen 77 REMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQ------------------------ 132 (1221)
T ss_pred HHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcc------------------------
Confidence 999999999999999999999999999999988 889999999999999997632
Q ss_pred HHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCcccccccc
Q psy2748 170 QEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNN 249 (690)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~ 249 (690)
+.+.+|+|.|||+|||||.|.|||.... ....
T Consensus 133 -----------------------------------------~~~~sy~VevSymEIYcErVrDLL~~p~-------~kg~ 164 (1221)
T KOG0245|consen 133 -----------------------------------------SQQMSYSVEVSYMEIYCERVRDLLNAPK-------SKGG 164 (1221)
T ss_pred -----------------------------------------cccceEEEEEeehhHHHHHHHHHhhCCC-------CCCC
Confidence 3457899999999999999999998422 1257
Q ss_pred ceEeecCCCCeEEeeeEEEEecCchhhhhh--------------------------------------------------
Q psy2748 250 RLIREDGDKNMFVHGVNEIEVTTPDEAFQS-------------------------------------------------- 279 (690)
Q Consensus 250 ~~ired~~~~~~V~gl~~v~V~s~eea~~~-------------------------------------------------- 279 (690)
+.+||++.-|+||.+|+.+.|.|..|...+
T Consensus 165 LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIs 244 (1221)
T KOG0245|consen 165 LRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKIS 244 (1221)
T ss_pred ceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeeeee
Confidence 889999999999999999999999987665
Q ss_pred ----------------------ccccccccchHHHHHHHHhhhcc--cCCCCCCCCCCchhhhcccccCCCCceeEEEEE
Q psy2748 280 ----------------------IGNINNSLMTLRTCLEILRENQL--QGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVC 335 (690)
Q Consensus 280 ----------------------a~~IN~SL~aL~~cI~aL~~~q~--~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvc 335 (690)
+.+||+||.|||+||+||++.+. +++..+||||||.||+||++.||||+||+||++
T Consensus 245 LVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAA 324 (1221)
T KOG0245|consen 245 LVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAA 324 (1221)
T ss_pred EEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhc
Confidence 67899999999999999999874 233469999999999999999999999999999
Q ss_pred eCCCCCCHHHHhhHHHHHhhhhceeeccCCCCcCCCCCCchhhhhhHHHHHHHHHHHhhhhhhhhhccCCccccchhhhc
Q psy2748 336 VNPRVEDYDENLAVMKFAEMSQEVQISKALPSRLDFGLTPGRRKFNEASKKMREILNNEKKMESLASAMPLIDSGVLYRL 415 (690)
Q Consensus 336 VsP~~~~~~ETl~TLrFA~rak~I~~~~~v~~~~~~~~~~~rr~~n~~~ke~~~~l~~~~~~~~~~~~~~~~~~e~~~~~ 415 (690)
|||+..||+|||+|||||.||+.|+|.+.||.++.. +....++++..+|+.... +... .+...-..-
T Consensus 325 lSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpna-------KLIRELreEv~rLksll~-----~~~~-~~~~~~~~p 391 (1221)
T KOG0245|consen 325 LSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNA-------KLIRELREEVARLKSLLR-----AQGL-GDIAVEGSP 391 (1221)
T ss_pred cChhhcChHHHHHHHHHhhHhhhhhccceeCCCccH-------HHHHHHHHHHHHHHHHHh-----cccc-ccccccCCc
Confidence 999999999999999999999999999999987532 122223333333332211 1110 111100011
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2748 416 RKDVHVERLRMMKERQEEKTKATKSKLSQKFQSKMQAQAETYESKLRHNEKKVIRKVKNLID 477 (690)
Q Consensus 416 ~~~~~ee~~~~L~~el~e~e~~~k~~le~~~~~kl~~~~ek~e~kl~~~eek~L~qlk~il~ 477 (690)
...+.+.++.++.++|.|.|+. ++++++.|++|+++-+.. ..+-.+.|.
T Consensus 392 ~~~~~~~~~e~~~~~L~E~Ek~------------mael~etW~EKl~~aEai-r~e~~~~L~ 440 (1221)
T KOG0245|consen 392 SALLSQPEIEELRERLQETEKI------------MAELNETWEEKLREAEAI-RMEREALLA 440 (1221)
T ss_pred ccccccccHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH-HHhHHHHHH
Confidence 1223445666666666665433 667788888888776666 333333343
No 4
>KOG4280|consensus
Probab=100.00 E-value=2.7e-65 Score=567.98 Aligned_cols=268 Identities=32% Similarity=0.541 Sum_probs=235.5
Q ss_pred CCCCEEEEEEecCCCCCC----CCceEEEec-CcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHH
Q psy2748 21 SSDPLQVFCRIRPMDNSY----DESCISVVS-DTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLV 95 (690)
Q Consensus 21 ~~~~V~V~~RvRP~~~~e----~~~~i~v~~-~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV 95 (690)
..+.|+|++|+||+...+ ...++.+.. ...+.+.+|... .....+.|+||.||+++++|.+||+.++.|||
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV 78 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAG----IEGKPKSFTFDAVFDSDSTQDDVYQETVAPLV 78 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCccc----ccCCCCCceeeeeecCCCCHHHHHHHHhHHHH
Confidence 457799999999998653 233444433 345667666552 12234569999999999999999999999999
Q ss_pred HHHhccCCeEEEEecccCCCCeeecCCC-CCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHHH
Q psy2748 96 ANLIHAKNGLLLTYGVTGSGKTYTMNGT-NSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAE 174 (690)
Q Consensus 96 ~~~l~G~N~~IfaYGqTGSGKTyTm~G~-~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~ 174 (690)
++++.||||||||||||||||||||.|. +...|||||++++||..|+..+
T Consensus 79 ~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~----------------------------- 129 (574)
T KOG4280|consen 79 ESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERK----------------------------- 129 (574)
T ss_pred HHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhcc-----------------------------
Confidence 9999999999999999999999999999 6679999999999999998721
Q ss_pred hhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEee
Q psy2748 175 MNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIRE 254 (690)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ire 254 (690)
+...|.|+|||+|||||.|+|||++... ..+.+++
T Consensus 130 -------------------------------------~~~~f~vrvS~lEiYnE~i~DLL~~~~~--------~~l~lre 164 (574)
T KOG4280|consen 130 -------------------------------------EKTRFLVRVSYLEIYNESIRDLLSPVNP--------KGLELRE 164 (574)
T ss_pred -------------------------------------ccceEEEEeehHHHHhHHHHHHhCccCc--------CCceeeE
Confidence 1226999999999999999999998663 4678999
Q ss_pred cCCCCeEEeeeEEEEecCchhhhhh-------------------------------------------------------
Q psy2748 255 DGDKNMFVHGVNEIEVTTPDEAFQS------------------------------------------------------- 279 (690)
Q Consensus 255 d~~~~~~V~gl~~v~V~s~eea~~~------------------------------------------------------- 279 (690)
++..|+||.|++++.|.++++++.+
T Consensus 165 ~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLag 244 (574)
T KOG4280|consen 165 DPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAG 244 (574)
T ss_pred cCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeeccc
Confidence 9999999999999999999999887
Q ss_pred ----------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCH
Q psy2748 280 ----------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDY 343 (690)
Q Consensus 280 ----------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~ 343 (690)
|++||+||++||+||.+|.++. ..||||||||||+||||+|||||+|+||+||+|+..+|
T Consensus 245 sEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~----~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~ 320 (574)
T KOG4280|consen 245 SERQSKTGAEGERLKEATNINLSLSALGNVISALVDGS----KTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNY 320 (574)
T ss_pred hhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccc----cCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhh
Confidence 6799999999999999999965 24999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHhhhhceeeccCCCCcCC
Q psy2748 344 DENLAVMKFAEMSQEVQISKALPSRLD 370 (690)
Q Consensus 344 ~ETl~TLrFA~rak~I~~~~~v~~~~~ 370 (690)
+||++||+||+||+.|+|.+.+|....
T Consensus 321 ~ETlsTLrfA~Rak~I~nk~~ined~~ 347 (574)
T KOG4280|consen 321 EETLSTLRFAQRAKAIKNKPVINEDPK 347 (574)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCcc
Confidence 999999999999999999999998765
No 5
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=4.1e-63 Score=535.90 Aligned_cols=260 Identities=55% Similarity=0.929 Sum_probs=235.0
Q ss_pred CCEEEEEEecCCCCC----CCCceEEEecCcEEEEcCCCCCCC----CcCCCcceEEEecEEeCCCCChHHHHHHhhHHH
Q psy2748 23 DPLQVFCRIRPMDNS----YDESCISVVSDTTVQLTPPDGSNP----RYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPL 94 (690)
Q Consensus 23 ~~V~V~~RvRP~~~~----e~~~~i~v~~~~tv~l~~p~~~~~----r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~pl 94 (690)
|+|+|||||||+... +...|+.+.++++|.+++|..... .+.......|.||+||+++++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 689999999999876 367899999999999999877522 234457889999999999999999999999999
Q ss_pred HHHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHHH
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAE 174 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~ 174 (690)
|+++++|+|+||||||||||||||||+|++.++|||||++++||+.+..
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~------------------------------- 129 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG------------------------------- 129 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-------------------------------
Confidence 9999999999999999999999999999999999999999999997642
Q ss_pred hhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEee
Q psy2748 175 MNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIRE 254 (690)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ire 254 (690)
|.|.+||+|||||.|||||++.... ....+.+.+++
T Consensus 130 -----------------------------------------~~v~~S~~EIyne~v~DLL~~~~~~---~~~~~~l~i~e 165 (345)
T cd01368 130 -----------------------------------------YSVFVSYVEIYNNYIYDLLEDSPSS---TKKRQSLRLRE 165 (345)
T ss_pred -----------------------------------------eeEEEEEEEEeCCEeEeCCCCcccc---ccCCCceEEEE
Confidence 7899999999999999999876532 12235678999
Q ss_pred cCCCCeEEeeeEEEEecCchhhhhh-------------------------------------------------------
Q psy2748 255 DGDKNMFVHGVNEIEVTTPDEAFQS------------------------------------------------------- 279 (690)
Q Consensus 255 d~~~~~~V~gl~~v~V~s~eea~~~------------------------------------------------------- 279 (690)
|..++++|.|++++.|.+++|++.+
T Consensus 166 d~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~ 245 (345)
T cd01368 166 DHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSL 245 (345)
T ss_pred CCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEE
Confidence 9999999999999999999999876
Q ss_pred ---------------------ccccccccchHHHHHHHHhhhcccC-CCCCCCCCCchhhhcccccCCCCceeEEEEEeC
Q psy2748 280 ---------------------IGNINNSLMTLRTCLEILRENQLQG-TNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVN 337 (690)
Q Consensus 280 ---------------------a~~IN~SL~aL~~cI~aL~~~q~~g-~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVs 337 (690)
+.+||+||++|++||.+|++++..+ ...||||||||||+||+|+|+||++|+||+|||
T Consensus 246 VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vs 325 (345)
T cd01368 246 VDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVN 325 (345)
T ss_pred EecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeC
Confidence 4579999999999999999987655 679999999999999999999999999999999
Q ss_pred CCCCCHHHHhhHHHHHhhhh
Q psy2748 338 PRVEDYDENLAVMKFAEMSQ 357 (690)
Q Consensus 338 P~~~~~~ETl~TLrFA~rak 357 (690)
|...+++||++||+||++|+
T Consensus 326 p~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 326 PCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999986
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=7.3e-63 Score=573.53 Aligned_cols=265 Identities=28% Similarity=0.490 Sum_probs=232.9
Q ss_pred CCCEEEEEEecCCCCCC-CCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHHHHhc
Q psy2748 22 SDPLQVFCRIRPMDNSY-DESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIH 100 (690)
Q Consensus 22 ~~~V~V~~RvRP~~~~e-~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~ 100 (690)
.++|+|||||||+...+ +..++...+++++.+. ...|.||+||+++++|++||+.++.|||+++++
T Consensus 97 ds~VkV~VRVRPl~~~E~g~~iV~~~s~dsl~I~-------------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLd 163 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEEGEMIVQKMSNDSLTIN-------------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLA 163 (1320)
T ss_pred CCCeEEEEEcCCCCCccCCCeeEEEcCCCeEEEe-------------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 57999999999998764 3345555566666653 247999999999999999999999999999999
Q ss_pred cCCeEEEEecccCCCCeeecCCCC----------CCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHH
Q psy2748 101 AKNGLLLTYGVTGSGKTYTMNGTN----------SDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQ 170 (690)
Q Consensus 101 G~N~~IfaYGqTGSGKTyTm~G~~----------~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~ 170 (690)
|||+||||||||||||||||+|+. .++|||||++++||+.|...+..
T Consensus 164 GyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k----------------------- 220 (1320)
T PLN03188 164 GFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIK----------------------- 220 (1320)
T ss_pred CCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhh-----------------------
Confidence 999999999999999999999964 46899999999999998652211
Q ss_pred HHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccc
Q psy2748 171 EQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNR 250 (690)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~ 250 (690)
..+....|.|++||+|||||.|||||++.. ..+
T Consensus 221 --------------------------------------~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~---------k~L 253 (1320)
T PLN03188 221 --------------------------------------HADRQLKYQCRCSFLEIYNEQITDLLDPSQ---------KNL 253 (1320)
T ss_pred --------------------------------------ccccccceEEEEEEEeeecCcceecccccc---------CCc
Confidence 012344699999999999999999998654 346
Q ss_pred eEeecCCCCeEEeeeEEEEecCchhhhhh---------------------------------------------------
Q psy2748 251 LIREDGDKNMFVHGVNEIEVTTPDEAFQS--------------------------------------------------- 279 (690)
Q Consensus 251 ~ired~~~~~~V~gl~~v~V~s~eea~~~--------------------------------------------------- 279 (690)
.+++|..+++||.|++++.|.+.++++.+
T Consensus 254 ~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnL 333 (1320)
T PLN03188 254 QIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINL 333 (1320)
T ss_pred eEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEE
Confidence 79999999999999999999999999876
Q ss_pred ---------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCC
Q psy2748 280 ---------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNP 338 (690)
Q Consensus 280 ---------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP 338 (690)
+++||+||++||+||.+|++.+..++..||||||||||+||||+||||++|+|||||||
T Consensus 334 VDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSP 413 (1320)
T PLN03188 334 VDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISP 413 (1320)
T ss_pred EECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCC
Confidence 56899999999999999998776677789999999999999999999999999999999
Q ss_pred CCCCHHHHhhHHHHHhhhhceeeccCCCCcC
Q psy2748 339 RVEDYDENLAVMKFAEMSQEVQISKALPSRL 369 (690)
Q Consensus 339 ~~~~~~ETl~TLrFA~rak~I~~~~~v~~~~ 369 (690)
...+++||++||+||++|+.|++.+.+|...
T Consensus 414 s~~~~eETLSTLrFAsRAK~IKNkpvvNe~~ 444 (1320)
T PLN03188 414 SQSCKSETFSTLRFAQRAKAIKNKAVVNEVM 444 (1320)
T ss_pred chhhHHHHHHHHHHHHHHhhcCccceeccch
Confidence 9999999999999999999999999988653
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=4e-62 Score=526.77 Aligned_cols=255 Identities=31% Similarity=0.526 Sum_probs=224.0
Q ss_pred CCEEEEEEecCCCCCC----CCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHHHH
Q psy2748 23 DPLQVFCRIRPMDNSY----DESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANL 98 (690)
Q Consensus 23 ~~V~V~~RvRP~~~~e----~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~ 98 (690)
++|+|||||||+...| ...|+...++.++.+... ..+.|.||+||+++++|++||+.++.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~----------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~ 70 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH----------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDC 70 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC----------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHH
Confidence 4799999999998765 345777777677666532 14589999999999999999999999999999
Q ss_pred hccCCeEEEEecccCCCCeeecCCCCC--------CCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHH
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTMNGTNS--------DGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQ 170 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm~G~~~--------~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~ 170 (690)
++|||+||||||||||||||||+|+.. ++|||||++++||+.++..+.+
T Consensus 71 ~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~----------------------- 127 (337)
T cd01373 71 LSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEK----------------------- 127 (337)
T ss_pred hCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhh-----------------------
Confidence 999999999999999999999999763 5899999999999988652111
Q ss_pred HHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccc
Q psy2748 171 EQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNR 250 (690)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~ 250 (690)
...+..|.|.+||+|||||.|||||++.. ..+
T Consensus 128 ---------------------------------------~~~~~~~~v~~S~~EIyne~v~DLL~~~~---------~~l 159 (337)
T cd01373 128 ---------------------------------------RGDGLKFLCKCSFLEIYNEQITDLLDPTS---------RNL 159 (337)
T ss_pred ---------------------------------------cccCceEEEEEEEEeecCCEeeeCCCCCC---------CCc
Confidence 01345799999999999999999998654 346
Q ss_pred eEeecCCCCeEEeeeEEEEecCchhhhhh---------------------------------------------------
Q psy2748 251 LIREDGDKNMFVHGVNEIEVTTPDEAFQS--------------------------------------------------- 279 (690)
Q Consensus 251 ~ired~~~~~~V~gl~~v~V~s~eea~~~--------------------------------------------------- 279 (690)
.++++..++++|.|++++.|.|.+|++.+
T Consensus 160 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VD 239 (337)
T cd01373 160 KIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLVD 239 (337)
T ss_pred eEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEEE
Confidence 79999999999999999999999999887
Q ss_pred -------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCC
Q psy2748 280 -------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340 (690)
Q Consensus 280 -------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~ 340 (690)
+.+||+||++|++||.+|++++. ++..||||||||||+||+|+||||++|+||+||+|..
T Consensus 240 LAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~-~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~ 318 (337)
T cd01373 240 LAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAH-GKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSS 318 (337)
T ss_pred CCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhcc-CCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCc
Confidence 56799999999999999998653 4468999999999999999999999999999999999
Q ss_pred CCHHHHhhHHHHHhhhhce
Q psy2748 341 EDYDENLAVMKFAEMSQEV 359 (690)
Q Consensus 341 ~~~~ETl~TLrFA~rak~I 359 (690)
.+++||++||+||.+|+.|
T Consensus 319 ~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 319 KCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred ccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999976
No 8
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=5e-62 Score=526.15 Aligned_cols=259 Identities=33% Similarity=0.593 Sum_probs=230.2
Q ss_pred CEEEEEEecCCCCCC----CCceEEEecCcEEEEcCCCCC-C---CCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHH
Q psy2748 24 PLQVFCRIRPMDNSY----DESCISVVSDTTVQLTPPDGS-N---PRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLV 95 (690)
Q Consensus 24 ~V~V~~RvRP~~~~e----~~~~i~v~~~~tv~l~~p~~~-~---~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV 95 (690)
+|+|||||||+...| ...|+.+.++.++.+.++... . ..........|.||+||+++++|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 589999999998653 557899988888877765542 1 11223457899999999999999999999999999
Q ss_pred HHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHHHh
Q psy2748 96 ANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEM 175 (690)
Q Consensus 96 ~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~~ 175 (690)
+++++|||+||||||||||||||||+|+..++|||||++++||+.++..
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~------------------------------- 129 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEER------------------------------- 129 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhc-------------------------------
Confidence 9999999999999999999999999999999999999999999988762
Q ss_pred hcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEeec
Q psy2748 176 NGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIRED 255 (690)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ired 255 (690)
..+..|.|.+||+|||||.|||||++.. ..+.+++|
T Consensus 130 -----------------------------------~~~~~~~v~vS~~EIyne~v~DLL~~~~---------~~l~i~ed 165 (338)
T cd01370 130 -----------------------------------KDDKEFEVSLSYLEIYNETIRDLLSPSS---------GPLELRED 165 (338)
T ss_pred -----------------------------------ccCceEEEEEEEEEEECCEEEECCCCCC---------CCceEEEc
Confidence 1234689999999999999999998753 35679999
Q ss_pred CCCCeEEeeeEEEEecCchhhhhh--------------------------------------------------------
Q psy2748 256 GDKNMFVHGVNEIEVTTPDEAFQS-------------------------------------------------------- 279 (690)
Q Consensus 256 ~~~~~~V~gl~~v~V~s~eea~~~-------------------------------------------------------- 279 (690)
..++++|.|++++.|.+.+|++++
T Consensus 166 ~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGs 245 (338)
T cd01370 166 PNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGS 245 (338)
T ss_pred CCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCC
Confidence 999999999999999999999877
Q ss_pred ---------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHH
Q psy2748 280 ---------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYD 344 (690)
Q Consensus 280 ---------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ 344 (690)
+.+||+||++|++||.+|++++. ...||||||||||+||+|+||||++|+||+||+|...+++
T Consensus 246 Er~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~--~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~ 323 (338)
T cd01370 246 ERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK--KNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYE 323 (338)
T ss_pred ccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC--CCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHH
Confidence 45799999999999999998763 4589999999999999999999999999999999999999
Q ss_pred HHhhHHHHHhhhhce
Q psy2748 345 ENLAVMKFAEMSQEV 359 (690)
Q Consensus 345 ETl~TLrFA~rak~I 359 (690)
||++||+||++|++|
T Consensus 324 eTl~TL~fa~ra~~I 338 (338)
T cd01370 324 ETHNTLKYANRAKNI 338 (338)
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999999986
No 9
>KOG0241|consensus
Probab=100.00 E-value=1.8e-61 Score=537.48 Aligned_cols=275 Identities=29% Similarity=0.492 Sum_probs=238.4
Q ss_pred CCCCEEEEEEecCCCCCC---CCceEEEecCcEEEEcCC--CCCCCCcCCCcceEEEecEEeCC-------CCChHHHHH
Q psy2748 21 SSDPLQVFCRIRPMDNSY---DESCISVVSDTTVQLTPP--DGSNPRYFNNKEVQYVFKKIFNV-------DVGQKQVYS 88 (690)
Q Consensus 21 ~~~~V~V~~RvRP~~~~e---~~~~i~v~~~~tv~l~~p--~~~~~r~~~~~~~~f~Fd~VF~~-------~asQ~evF~ 88 (690)
+...|+|.+||||++..| ...|+.-.+....++++| ....... ...++|.||++|.+ .++|+.||+
T Consensus 2 s~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~--k~pktFAFDhcF~s~dpes~n~agQE~Vf~ 79 (1714)
T KOG0241|consen 2 SDAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGES--KGPKTFAFDHCFWSMDPESKNYAGQETVFK 79 (1714)
T ss_pred CCcceEEEEEecccchhhhcccccceEEeccCceeecCCCcccccccc--CCCceeecccccccCCccccccccchhHHH
Confidence 356899999999999876 335655555444444433 2222222 34678999999976 478999999
Q ss_pred HhhHHHHHHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHH
Q psy2748 89 EVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDIL 168 (690)
Q Consensus 89 ~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~l 168 (690)
.++..+|+++++|||+||||||||||||||||+|..+++|||||.++.||..|...
T Consensus 80 ~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~------------------------ 135 (1714)
T KOG0241|consen 80 CLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKE------------------------ 135 (1714)
T ss_pred hcchHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhc------------------------
Confidence 99999999999999999999999999999999999999999999999999999762
Q ss_pred HHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccc
Q psy2748 169 LQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLN 248 (690)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~ 248 (690)
.++...|.|.|||+|||||.+||||++... .+
T Consensus 136 -----------------------------------------~n~~~tfkVeVSymEIynEkv~DLLdPk~s-------sq 167 (1714)
T KOG0241|consen 136 -----------------------------------------SNPSQTFKVEVSYMEIYNEKVRDLLDPKGS-------SQ 167 (1714)
T ss_pred -----------------------------------------cCCCceEEEEEEHHHHhhcchhhhhCCCCC-------cc
Confidence 134567999999999999999999998774 27
Q ss_pred cceEeecCCCCeEEeeeEEEEecCchhhhhh-------------------------------------------------
Q psy2748 249 NRLIREDGDKNMFVHGVNEIEVTTPDEAFQS------------------------------------------------- 279 (690)
Q Consensus 249 ~~~ired~~~~~~V~gl~~v~V~s~eea~~~------------------------------------------------- 279 (690)
.+.++++.--+.||+||++..|.|+++.-.+
T Consensus 168 tlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvskl 247 (1714)
T KOG0241|consen 168 TLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKL 247 (1714)
T ss_pred eeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhheeee
Confidence 8899999999999999999999999986544
Q ss_pred -----------------------ccccccccchHHHHHHHHhhhcc-cCCCCCCCCCCchhhhcccccCCCCceeEEEEE
Q psy2748 280 -----------------------IGNINNSLMTLRTCLEILRENQL-QGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVC 335 (690)
Q Consensus 280 -----------------------a~~IN~SL~aL~~cI~aL~~~q~-~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvc 335 (690)
++|||+||.+||.||.+|++... .|+.++||||||.||.||||.|||||+|+||+|
T Consensus 248 slVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiat 327 (1714)
T KOG0241|consen 248 SLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIAT 327 (1714)
T ss_pred eEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEE
Confidence 68999999999999999998552 255799999999999999999999999999999
Q ss_pred eCCCCCCHHHHhhHHHHHhhhhceeeccCCCCcC
Q psy2748 336 VNPRVEDYDENLAVMKFAEMSQEVQISKALPSRL 369 (690)
Q Consensus 336 VsP~~~~~~ETl~TLrFA~rak~I~~~~~v~~~~ 369 (690)
|||++.+|+|||+|||||++|++|+|...+|.++
T Consensus 328 vSPaAdnyeeTlStLRYadrAkrIvN~avvNedp 361 (1714)
T KOG0241|consen 328 VSPAADNYEETLSTLRYADRAKRIVNHAVVNEDP 361 (1714)
T ss_pred ecccccchHHHHHHHHHHHHHHHhhccccccCCc
Confidence 9999999999999999999999999999988864
No 10
>KOG0240|consensus
Probab=100.00 E-value=1.8e-61 Score=524.43 Aligned_cols=261 Identities=31% Similarity=0.549 Sum_probs=229.1
Q ss_pred CCCCEEEEEEecCCCCCCCCce----EEEec-CcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHH
Q psy2748 21 SSDPLQVFCRIRPMDNSYDESC----ISVVS-DTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLV 95 (690)
Q Consensus 21 ~~~~V~V~~RvRP~~~~e~~~~----i~v~~-~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV 95 (690)
....|+|+||+||++..+...| ..+.+ ..+|.+....- ...|.||+||.|+++|++||+.++.|+|
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~---------~~~y~FDrVF~pnatQe~Vy~~~a~~Iv 75 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKE---------TKTYVFDRVFSPNATQEDVYEFAAKPIV 75 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccc---------cccceeeeecCCCccHHHHHHHHHHHHH
Confidence 4578999999999986653322 11122 34455442211 2689999999999999999999999999
Q ss_pred HHHhccCCeEEEEecccCCCCeeecCCCCC---CCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHH
Q psy2748 96 ANLIHAKNGLLLTYGVTGSGKTYTMNGTNS---DGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQ 172 (690)
Q Consensus 96 ~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~---~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~ 172 (690)
++||.||||||||||||||||||||.|... ..|||||++.+||+.|..
T Consensus 76 ~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys----------------------------- 126 (607)
T KOG0240|consen 76 DDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYS----------------------------- 126 (607)
T ss_pred HHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhc-----------------------------
Confidence 999999999999999999999999999876 569999999999999976
Q ss_pred HHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceE
Q psy2748 173 AEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLI 252 (690)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~i 252 (690)
.+....|.|.|||+|||.|.|+|||++.. ..+.+
T Consensus 127 -------------------------------------~~~n~efhVkVsy~EIYmEKi~DLL~~~k---------~nlsv 160 (607)
T KOG0240|consen 127 -------------------------------------MEENLEFHVKVSYFEIYMEKIRDLLDPEK---------TNLSV 160 (607)
T ss_pred -------------------------------------CcccceEEEEEEeehhhhhHHHHHhCccc---------CCcee
Confidence 23456899999999999999999999765 46678
Q ss_pred eecCCCCeEEeeeEEEEecCchhhhhh-----------------------------------------------------
Q psy2748 253 REDGDKNMFVHGVNEIEVTTPDEAFQS----------------------------------------------------- 279 (690)
Q Consensus 253 red~~~~~~V~gl~~v~V~s~eea~~~----------------------------------------------------- 279 (690)
.+|.+..+||+|++++.|.+.++++.+
T Consensus 161 heDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLaGS 240 (607)
T KOG0240|consen 161 HEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLAGS 240 (607)
T ss_pred ecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcccc
Confidence 999999999999999999999999987
Q ss_pred ---------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHH
Q psy2748 280 ---------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYD 344 (690)
Q Consensus 280 ---------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ 344 (690)
|.+||+||.|||+||++|+++ +..|||||||||||||+|+||||++|.+|+|++|+.-+-.
T Consensus 241 EkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g----~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ 316 (607)
T KOG0240|consen 241 EKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEG----PKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEA 316 (607)
T ss_pred cccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcC----CCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccc
Confidence 789999999999999999994 4589999999999999999999999999999999999999
Q ss_pred HHhhHHHHHhhhhceeeccCCCCcC
Q psy2748 345 ENLAVMKFAEMSQEVQISKALPSRL 369 (690)
Q Consensus 345 ETl~TLrFA~rak~I~~~~~v~~~~ 369 (690)
||.+||+|+.||+.|+|...+|...
T Consensus 317 ET~STl~fg~rak~ikN~v~~n~e~ 341 (607)
T KOG0240|consen 317 ETKSTLRFGNRAKTIKNTVWVNLEL 341 (607)
T ss_pred ccccchhhccccccccchhhhhhHh
Confidence 9999999999999999988877643
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=6.6e-60 Score=513.23 Aligned_cols=270 Identities=27% Similarity=0.467 Sum_probs=234.2
Q ss_pred CCEEEEEEecCCCCCC----CCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCC-------CChHHHHHHhh
Q psy2748 23 DPLQVFCRIRPMDNSY----DESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVD-------VGQKQVYSEVA 91 (690)
Q Consensus 23 ~~V~V~~RvRP~~~~e----~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~-------asQ~evF~~v~ 91 (690)
++|+|||||||+...| ...|+.+ ++.+|.+.+|.... ........|.||+||+++ ++|++||+.++
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~-~~~~v~v~~~~~~~--~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~ 77 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQM-PGKVTTLKNPKAAD--ATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLG 77 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEE-CCCEEEEEcCCccc--ccccCceEEECCeEecccCCCCCCCCCHHHHHHHHH
Confidence 5799999999998654 2345555 44888888775311 112356789999999999 99999999999
Q ss_pred HHHHHHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHH
Q psy2748 92 HPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQE 171 (690)
Q Consensus 92 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~ 171 (690)
.|+|+++++|+|+||||||||||||||||+|+..++|||||++++||+.+....
T Consensus 78 ~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~-------------------------- 131 (356)
T cd01365 78 RELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKK-------------------------- 131 (356)
T ss_pred HHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhcc--------------------------
Confidence 999999999999999999999999999999999999999999999999887521
Q ss_pred HHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccce
Q psy2748 172 QAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRL 251 (690)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ 251 (690)
+.+..|+|.+||+|||||.|||||++... ....+.
T Consensus 132 ---------------------------------------~~~~~~~v~~S~~EIy~e~v~DLL~~~~~------~~~~l~ 166 (356)
T cd01365 132 ---------------------------------------EQNLSYEVEVSYMEIYNEKVRDLLNPKKK------NKGNLK 166 (356)
T ss_pred ---------------------------------------ccCceEEEEEEEEEEECCeeeeCCCCCcc------CCcCce
Confidence 12457999999999999999999987641 113567
Q ss_pred EeecCCCCeEEeeeEEEEecCchhhhhh----------------------------------------------------
Q psy2748 252 IREDGDKNMFVHGVNEIEVTTPDEAFQS---------------------------------------------------- 279 (690)
Q Consensus 252 ired~~~~~~V~gl~~v~V~s~eea~~~---------------------------------------------------- 279 (690)
++++...+++|.|++++.|.|++|++.+
T Consensus 167 i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~V 246 (356)
T cd01365 167 VREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLV 246 (356)
T ss_pred EEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEee
Confidence 8999999999999999999999999876
Q ss_pred --------------------ccccccccchHHHHHHHHhhhccc---CCCCCCCCCCchhhhcccccCCCCceeEEEEEe
Q psy2748 280 --------------------IGNINNSLMTLRTCLEILRENQLQ---GTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCV 336 (690)
Q Consensus 280 --------------------a~~IN~SL~aL~~cI~aL~~~q~~---g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcV 336 (690)
+.+||+||++|++||.+|++++.. +.+.||||||||||+||+++|||+++|+||+||
T Consensus 247 DLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~v 326 (356)
T cd01365 247 DLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATI 326 (356)
T ss_pred ecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEe
Confidence 346999999999999999987643 356899999999999999999999999999999
Q ss_pred CCCCCCHHHHhhHHHHHhhhhceeeccCCC
Q psy2748 337 NPRVEDYDENLAVMKFAEMSQEVQISKALP 366 (690)
Q Consensus 337 sP~~~~~~ETl~TLrFA~rak~I~~~~~v~ 366 (690)
+|...+++||++||+||.++++|++.|.+|
T Consensus 327 sp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 327 SPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred CCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 999999999999999999999999988654
No 12
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=3e-60 Score=509.32 Aligned_cols=252 Identities=29% Similarity=0.497 Sum_probs=224.4
Q ss_pred CCEEEEEEecCCCCCC----CCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHHHH
Q psy2748 23 DPLQVFCRIRPMDNSY----DESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANL 98 (690)
Q Consensus 23 ~~V~V~~RvRP~~~~e----~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~ 98 (690)
++|+|||||||+...+ ...++.+.++++|.+++|..............|.||+||+++++|++||+.++.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 5799999999998765 345666666678999987654221222346789999999999999999999999999999
Q ss_pred hccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHHHhhcc
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGE 178 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~~~~~ 178 (690)
++|+|+||||||||||||||||+|+..++|||||++++||+.++..
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~---------------------------------- 126 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQP---------------------------------- 126 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhcc----------------------------------
Confidence 9999999999999999999999999999999999999999988651
Q ss_pred cccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEeecCCC
Q psy2748 179 LTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDK 258 (690)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ired~~~ 258 (690)
...|.|.+||+|||||.|||||++. ..+.++++..+
T Consensus 127 ----------------------------------~~~~~v~~S~~EIy~e~v~DLL~~~----------~~l~i~~~~~~ 162 (322)
T cd01367 127 ----------------------------------NDDLGVTVSFFEIYGGKLFDLLNDR----------KRLSVLEDGKG 162 (322)
T ss_pred ----------------------------------ccccEEEEEEEeeecCchhhhccCc----------cceeEEEcCCC
Confidence 0357899999999999999999862 24678999999
Q ss_pred CeEEeeeEEEEecCchhhhhh-----------------------------------------------------------
Q psy2748 259 NMFVHGVNEIEVTTPDEAFQS----------------------------------------------------------- 279 (690)
Q Consensus 259 ~~~V~gl~~v~V~s~eea~~~----------------------------------------------------------- 279 (690)
+++|.|++++.|.|.+|++.+
T Consensus 163 ~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~s~l~~vDLAGsE~~~~~~~~ 242 (322)
T cd01367 163 NVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKLNKLLGKLSFIDLAGSERGADTSEH 242 (322)
T ss_pred CEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecCCeeEEEEEEeecCCcccccccccc
Confidence 999999999999999999877
Q ss_pred -------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHHHHhhHHHH
Q psy2748 280 -------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKF 352 (690)
Q Consensus 280 -------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl~TLrF 352 (690)
+.+||+||++|++||.+|++++ .||||||||||+||+|+|||+++|+||+||+|...+++||++||+|
T Consensus 243 ~~~~~~e~~~IN~SL~~L~~vi~al~~~~-----~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~f 317 (322)
T cd01367 243 DRQTRKEGAEINKSLLALKECIRALASNK-----AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRY 317 (322)
T ss_pred chhhHHhHhHHhHHHHHHHHHHHHHhcCC-----CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHH
Confidence 4679999999999999999865 8999999999999999999999999999999999999999999999
Q ss_pred Hhhhh
Q psy2748 353 AEMSQ 357 (690)
Q Consensus 353 A~rak 357 (690)
|+|++
T Consensus 318 a~r~k 322 (322)
T cd01367 318 ADRVK 322 (322)
T ss_pred HHhhC
Confidence 99975
No 13
>KOG0242|consensus
Probab=100.00 E-value=4e-60 Score=544.82 Aligned_cols=266 Identities=30% Similarity=0.529 Sum_probs=230.5
Q ss_pred CCCEEEEEEecCCCCC----CCCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHHH
Q psy2748 22 SDPLQVFCRIRPMDNS----YDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVAN 97 (690)
Q Consensus 22 ~~~V~V~~RvRP~~~~----e~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~~ 97 (690)
...|.|+|||||+... .+.+-+.+.++..+..........+ .....|.||+||+++++|++||+..++|||.+
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~ 81 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEK---SKPEKYEFDRVFGEESTQEDVYERTTKPLLLS 81 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeecccccccc---ccccceeeeeecCCCCCHHHHHHhccHHHHHH
Confidence 4579999999999875 2223234445544433322211011 11578999999999999999999999999999
Q ss_pred HhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHHHhhc
Q psy2748 98 LIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNG 177 (690)
Q Consensus 98 ~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~~~~ 177 (690)
+++|+|++|||||||||||||||.|...+|||||+++.+||+.|...
T Consensus 82 ~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~--------------------------------- 128 (675)
T KOG0242|consen 82 VLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKS--------------------------------- 128 (675)
T ss_pred HhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhc---------------------------------
Confidence 99999999999999999999999999999999999999999999762
Q ss_pred ccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEeecCC
Q psy2748 178 ELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGD 257 (690)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ired~~ 257 (690)
.+..|.|.|||+|||||.|+|||++.. +.+.++||+.
T Consensus 129 ----------------------------------~~r~f~v~vSYlEIYNE~I~DLL~~~~---------~~L~irED~~ 165 (675)
T KOG0242|consen 129 ----------------------------------GEREFSVRVSYLEIYNERIRDLLNPDG---------GDLRLREDSE 165 (675)
T ss_pred ----------------------------------CCceeEEEEEEEEEeccccccccCCCC---------CCceEeEcCC
Confidence 255799999999999999999999877 3478999999
Q ss_pred CCeEEeeeEEEEecCchhhhhh----------------------------------------------------------
Q psy2748 258 KNMFVHGVNEIEVTTPDEAFQS---------------------------------------------------------- 279 (690)
Q Consensus 258 ~~~~V~gl~~v~V~s~eea~~~---------------------------------------------------------- 279 (690)
++++|.|+++..|.|.+++..+
T Consensus 166 ~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~~~s~L~lIDLAGSERas~T 245 (675)
T KOG0242|consen 166 GGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASSRVSKLNLIDLAGSERASRT 245 (675)
T ss_pred CCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccchhheehhhhhhhhhhhhhh
Confidence 9999999999999999999877
Q ss_pred ---------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHHHHhhHH
Q psy2748 280 ---------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVM 350 (690)
Q Consensus 280 ---------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl~TL 350 (690)
+.+||+||++||+||.+|.++.. ..||||||||||||||++||||++|+|||||+|...+|+||.+||
T Consensus 246 ~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~---~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL 322 (675)
T KOG0242|consen 246 GNEGVRLKEGAHINRSLLALGTVINKLSEGKR---PRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTL 322 (675)
T ss_pred hccceeccccchhhHHHHHHHHHHHHHccccc---cCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHH
Confidence 67899999999999999988643 249999999999999999999999999999999999999999999
Q ss_pred HHHhhhhceeeccCCCCcC
Q psy2748 351 KFAEMSQEVQISKALPSRL 369 (690)
Q Consensus 351 rFA~rak~I~~~~~v~~~~ 369 (690)
+||.+|++|++...+|...
T Consensus 323 ~fAsrak~i~~~~~~n~~~ 341 (675)
T KOG0242|consen 323 KFASRAKEITTKAQVNVIL 341 (675)
T ss_pred HHHHHhhhcccccccceec
Confidence 9999999999999887643
No 14
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.2e-58 Score=496.42 Aligned_cols=246 Identities=28% Similarity=0.497 Sum_probs=221.5
Q ss_pred CEEEEEEecCCCCCC--CCceEEEecC-----cEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHH
Q psy2748 24 PLQVFCRIRPMDNSY--DESCISVVSD-----TTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVA 96 (690)
Q Consensus 24 ~V~V~~RvRP~~~~e--~~~~i~v~~~-----~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~ 96 (690)
+|+|||||||+...+ ...|+.+.++ .+|.+.+|... .....|.||+||+++++|++||+.++.|+|+
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~~------~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~ 74 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNR------GETKKYQFDAFYGTECTQEDIFSREVKPIVP 74 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCCC------CCccEEecCeEECCCCCHHHHHHHHHHHHHH
Confidence 589999999997654 4578887665 57888887542 3466899999999999999999999999999
Q ss_pred HHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHHHhh
Q psy2748 97 NLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMN 176 (690)
Q Consensus 97 ~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~~~ 176 (690)
++++|+|+||||||||||||||||+|+..++|||||++++||+.++..
T Consensus 75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~-------------------------------- 122 (319)
T cd01376 75 HLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQ-------------------------------- 122 (319)
T ss_pred HHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhc--------------------------------
Confidence 999999999999999999999999999999999999999999877541
Q ss_pred cccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEeecC
Q psy2748 177 GELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDG 256 (690)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ired~ 256 (690)
...|.|.+||+|||||.|||||++.. ..+.+++++
T Consensus 123 ------------------------------------~~~~~v~~S~~EIy~e~v~DLL~~~~---------~~l~i~~~~ 157 (319)
T cd01376 123 ------------------------------------AWTGAFSMSYYEIYNEKVYDLLEPAK---------KELPIREDK 157 (319)
T ss_pred ------------------------------------cccceEEEEEEEEECCEeeEccCCCC---------CCceEEEcC
Confidence 13478999999999999999998753 345689999
Q ss_pred CCCeEEeeeEEEEecCchhhhhh---------------------------------------------------------
Q psy2748 257 DKNMFVHGVNEIEVTTPDEAFQS--------------------------------------------------------- 279 (690)
Q Consensus 257 ~~~~~V~gl~~v~V~s~eea~~~--------------------------------------------------------- 279 (690)
.++++|.|++++.|.+.+|++.+
T Consensus 158 ~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~s~l~~VDLAGsE~~~~~ 237 (319)
T cd01376 158 DGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASNIQLEGKLNLIDLAGSEDNRRT 237 (319)
T ss_pred CCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCCceEEEEEEEEECCCCCccccc
Confidence 99999999999999999998765
Q ss_pred ---------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHHHHhhHH
Q psy2748 280 ---------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVM 350 (690)
Q Consensus 280 ---------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl~TL 350 (690)
+.+||+||++|++||.+|..++ .||||||||||+||+|+|||+++|+||+||+|...+++|||+||
T Consensus 238 ~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-----~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL 312 (319)
T cd01376 238 GNEGIRLKESAAINSSLFVLSKVVDALNKGL-----PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTL 312 (319)
T ss_pred CCccchhhhhhhhhhhHHHHHHHHHHHhcCC-----CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHH
Confidence 4689999999999999998764 89999999999999999999999999999999999999999999
Q ss_pred HHHhhhh
Q psy2748 351 KFAEMSQ 357 (690)
Q Consensus 351 rFA~rak 357 (690)
+||+||+
T Consensus 313 ~fa~r~~ 319 (319)
T cd01376 313 NFASRSK 319 (319)
T ss_pred HHHHhhC
Confidence 9999986
No 15
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=2.9e-58 Score=494.69 Aligned_cols=249 Identities=31% Similarity=0.601 Sum_probs=226.7
Q ss_pred CCEEEEEEecCCCCCC----CCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHHHH
Q psy2748 23 DPLQVFCRIRPMDNSY----DESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANL 98 (690)
Q Consensus 23 ~~V~V~~RvRP~~~~e----~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~ 98 (690)
++|+|+|||||+...+ ..+|+.+.++++|.+..+.. ...|.||+||+++++|++||+.++.|+|+++
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~~---------~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~ 72 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDD---------GKTFSFDRVFPPNTTQEDVYNFVAKPIVDDV 72 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCCC---------ceEEEcCeEECCCCCHHHHHHHHHHHHHHHH
Confidence 5799999999998764 56889998888999987633 5689999999999999999999999999999
Q ss_pred hccCCeEEEEecccCCCCeeecCCCCC---CCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHHHh
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTMNGTNS---DGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEM 175 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm~G~~~---~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~~ 175 (690)
++|+|++|||||+|||||||||+|+.. ++|||||++++||+.+...
T Consensus 73 ~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~------------------------------- 121 (325)
T cd01369 73 LNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSM------------------------------- 121 (325)
T ss_pred HcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhc-------------------------------
Confidence 999999999999999999999999988 8999999999999988652
Q ss_pred hcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEeec
Q psy2748 176 NGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIRED 255 (690)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ired 255 (690)
+.+..|.|.+||+|||||.+||||++.. ..+.++++
T Consensus 122 -----------------------------------~~~~~~~v~~S~~EIy~e~v~DLL~~~~---------~~l~i~~~ 157 (325)
T cd01369 122 -----------------------------------DENLEFHVKVSYLEIYMEKIRDLLDVSK---------DNLQVHED 157 (325)
T ss_pred -----------------------------------cCCceEEEEEEEEEEECCChhhcccCcc---------CCceEEEc
Confidence 2344689999999999999999998764 24568999
Q ss_pred CCCCeEEeeeEEEEecCchhhhhh--------------------------------------------------------
Q psy2748 256 GDKNMFVHGVNEIEVTTPDEAFQS-------------------------------------------------------- 279 (690)
Q Consensus 256 ~~~~~~V~gl~~v~V~s~eea~~~-------------------------------------------------------- 279 (690)
..++++|.|++++.|.|.+|++.+
T Consensus 158 ~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGsE~~ 237 (325)
T cd01369 158 KNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSEKV 237 (325)
T ss_pred CCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCCCcc
Confidence 999999999999999999999877
Q ss_pred ------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHHHHh
Q psy2748 280 ------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENL 347 (690)
Q Consensus 280 ------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl 347 (690)
+..||+||++|++||.+|.+++ ..||||||||||+||+++|||+++|+||+||+|...+++||+
T Consensus 238 ~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~----~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl 313 (325)
T cd01369 238 SKTGAEGQTLEEAKKINKSLSALGNVINALTDGK----STHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETL 313 (325)
T ss_pred cccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCC----CCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHH
Confidence 3569999999999999998754 379999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhce
Q psy2748 348 AVMKFAEMSQEV 359 (690)
Q Consensus 348 ~TLrFA~rak~I 359 (690)
+||+||+||++|
T Consensus 314 ~TL~~a~r~~~i 325 (325)
T cd01369 314 STLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHhhcC
Confidence 999999999976
No 16
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3.2e-58 Score=495.91 Aligned_cols=259 Identities=31% Similarity=0.520 Sum_probs=228.4
Q ss_pred CEEEEEEecCCCCCCCCceEEEecCcEEEEcCCCCC--CCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHHHHhcc
Q psy2748 24 PLQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGS--NPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHA 101 (690)
Q Consensus 24 ~V~V~~RvRP~~~~e~~~~i~v~~~~tv~l~~p~~~--~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G 101 (690)
+|+||||+||+...+...+....++.++.++.|+.. ...+.......|.||+||++ ++|++||+.++.|+|+++++|
T Consensus 1 ~i~V~vRvRP~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G 79 (334)
T cd01375 1 TIQVFVRVRPTPTKQGSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDG 79 (334)
T ss_pred CeEEEEECCCCCCCCCccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCC
Confidence 699999999999766766666677789999988776 23344456789999999999 999999999999999999999
Q ss_pred CCeEEEEecccCCCCeeecCCCC---CCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHHHhhcc
Q psy2748 102 KNGLLLTYGVTGSGKTYTMNGTN---SDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGE 178 (690)
Q Consensus 102 ~N~~IfaYGqTGSGKTyTm~G~~---~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~~~~~ 178 (690)
+|+||||||+|||||||||+|+. .++|||||++++||+.++..
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~---------------------------------- 125 (334)
T cd01375 80 YNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR---------------------------------- 125 (334)
T ss_pred CccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc----------------------------------
Confidence 99999999999999999999976 46899999999999988651
Q ss_pred cccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEeecCCC
Q psy2748 179 LTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDK 258 (690)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ired~~~ 258 (690)
.+..|+|++||+|||||.|||||++.... ......+.+++++.+
T Consensus 126 ---------------------------------~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~---~~~~~~l~i~e~~~~ 169 (334)
T cd01375 126 ---------------------------------ATKTYTVHVSYLEIYNEQLYDLLGDTPEA---LESLPAVTILEDSEQ 169 (334)
T ss_pred ---------------------------------cCcceEEEEEEEEEECCEeecCCCCCccc---cccCCceEEEEcCCC
Confidence 23468999999999999999999876421 111245678999999
Q ss_pred CeEEeeeEEEEecCchhhhhh-----------------------------------------------------------
Q psy2748 259 NMFVHGVNEIEVTTPDEAFQS----------------------------------------------------------- 279 (690)
Q Consensus 259 ~~~V~gl~~v~V~s~eea~~~----------------------------------------------------------- 279 (690)
+++|.|++++.|.+.+|++.+
T Consensus 170 ~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLAGsEr~~ 249 (334)
T cd01375 170 NIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLVDLAGSERVS 249 (334)
T ss_pred CEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEEEEEECCCCCccc
Confidence 999999999999999998876
Q ss_pred -----------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHHHHhh
Q psy2748 280 -----------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLA 348 (690)
Q Consensus 280 -----------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl~ 348 (690)
+..||+||++|++||.+|++++ ..||||||||||+||+|+|||+|+|+||+||+|...+++|||+
T Consensus 250 ~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~----~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~ 325 (334)
T cd01375 250 KTGVSGQVLKEAKYINKSLSFLEQVINALSEKA----RTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLS 325 (334)
T ss_pred cccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC----CCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHH
Confidence 4569999999999999998864 4799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh
Q psy2748 349 VMKFAEMSQ 357 (690)
Q Consensus 349 TLrFA~rak 357 (690)
||+||+|++
T Consensus 326 TL~fa~r~~ 334 (334)
T cd01375 326 TLRFAQRVA 334 (334)
T ss_pred HHHHHHhcC
Confidence 999999974
No 17
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=7.7e-58 Score=490.56 Aligned_cols=248 Identities=32% Similarity=0.561 Sum_probs=223.5
Q ss_pred CEEEEEEecCCCCCC---CCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHHHHhc
Q psy2748 24 PLQVFCRIRPMDNSY---DESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIH 100 (690)
Q Consensus 24 ~V~V~~RvRP~~~~e---~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~ 100 (690)
+|+||||+||+...+ +.+++.+.++.+|.+.++.. ...|.||+||+++++|++||+.++.|+|+++++
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~~~---------~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~ 71 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEESTP---------GQSFTFDRVFGGESTNREVYERIAKPVVRSALE 71 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCCCC---------CeEEecCeEECCCCCHHHHHHHHHHHHHHHHHC
Confidence 599999999998764 45566666666888876533 678999999999999999999999999999999
Q ss_pred cCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHHHhhcccc
Q psy2748 101 AKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELT 180 (690)
Q Consensus 101 G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~~~~~~~ 180 (690)
|+|+||||||+|||||||||+|+..++|||||++++||+.+...
T Consensus 72 G~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~------------------------------------ 115 (321)
T cd01374 72 GYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDT------------------------------------ 115 (321)
T ss_pred CCceeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcc------------------------------------
Confidence 99999999999999999999999999999999999999988651
Q ss_pred cCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEeecCCCCe
Q psy2748 181 KRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNM 260 (690)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ired~~~~~ 260 (690)
.+..|.|.+||+|||||.|||||++.. ..+.+++++.+++
T Consensus 116 -------------------------------~~~~~~v~~S~~Eiy~e~v~DLL~~~~---------~~l~i~~~~~~~~ 155 (321)
T cd01374 116 -------------------------------PDREFLLRVSYLEIYNEKIKDLLSPSP---------QELRIREDPNKGV 155 (321)
T ss_pred -------------------------------cCceEEEEEEEEEEEcCEeEEccCCCC---------CCceEEECCCCCE
Confidence 234689999999999999999998765 3467899999999
Q ss_pred EEeeeEEEEecCchhhhhh-------------------------------------------------------------
Q psy2748 261 FVHGVNEIEVTTPDEAFQS------------------------------------------------------------- 279 (690)
Q Consensus 261 ~V~gl~~v~V~s~eea~~~------------------------------------------------------------- 279 (690)
+|.|++++.|.+++|++.+
T Consensus 156 ~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~ 235 (321)
T cd01374 156 VVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQ 235 (321)
T ss_pred EeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCcccc
Confidence 9999999999999998776
Q ss_pred ---------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHHHHhhHH
Q psy2748 280 ---------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVM 350 (690)
Q Consensus 280 ---------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl~TL 350 (690)
+.+||+||++|++||.+|++++. ..||||||||||+||+++|||+++|+||+||+|...+++||++||
T Consensus 236 ~~~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~---~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL 312 (321)
T cd01374 236 TGAGERRKEGSFINKSLLTLGTVISKLSEGKN---SGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTL 312 (321)
T ss_pred CCCCccccccchhhhHHHHHHHHHHHHHhcCC---CCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHH
Confidence 24599999999999999998752 489999999999999999999999999999999999999999999
Q ss_pred HHHhhhhce
Q psy2748 351 KFAEMSQEV 359 (690)
Q Consensus 351 rFA~rak~I 359 (690)
+||+++++|
T Consensus 313 ~~a~r~~~i 321 (321)
T cd01374 313 KFASRAKKV 321 (321)
T ss_pred HHHHHHhcC
Confidence 999999876
No 18
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=7.6e-58 Score=496.47 Aligned_cols=261 Identities=29% Similarity=0.524 Sum_probs=228.3
Q ss_pred CCEEEEEEecCCCCCC----CCceEEEecC-cEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHHH
Q psy2748 23 DPLQVFCRIRPMDNSY----DESCISVVSD-TTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVAN 97 (690)
Q Consensus 23 ~~V~V~~RvRP~~~~e----~~~~i~v~~~-~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~~ 97 (690)
.+|+|+|||||+...| ...++.+.++ ++|.+.++.. .......|.||+||+++++|++||+.++.|+|++
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-----~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~ 76 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-----DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDE 76 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-----ccccceeEeccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4799999999998755 2456777665 6677765432 1234678999999999999999999999999999
Q ss_pred HhccCCeEEEEecccCCCCeeecCCCCC-----------CCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHH
Q psy2748 98 LIHAKNGLLLTYGVTGSGKTYTMNGTNS-----------DGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVD 166 (690)
Q Consensus 98 ~l~G~N~~IfaYGqTGSGKTyTm~G~~~-----------~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~ 166 (690)
+++|+|+||||||+|||||||||+|... ++|||||++++||+.+...
T Consensus 77 ~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~---------------------- 134 (352)
T cd01364 77 VLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ---------------------- 134 (352)
T ss_pred HhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc----------------------
Confidence 9999999999999999999999999753 4899999999999988651
Q ss_pred HHHHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccc
Q psy2748 167 ILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQ 246 (690)
Q Consensus 167 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~ 246 (690)
+..|+|.+||+|||||.|||||++... .
T Consensus 135 ----------------------------------------------~~~~~v~~S~~EIy~e~v~DLL~~~~~------~ 162 (352)
T cd01364 135 ----------------------------------------------NTEYSVKVSYLELYNEELFDLLSSESD------L 162 (352)
T ss_pred ----------------------------------------------cceeEEEEEEEEeeCCeeeeCCCCccc------c
Confidence 335899999999999999999987641 1
Q ss_pred cccceEeec--CCCCeEEeeeEEEEecCchhhhhh---------------------------------------------
Q psy2748 247 LNNRLIRED--GDKNMFVHGVNEIEVTTPDEAFQS--------------------------------------------- 279 (690)
Q Consensus 247 ~~~~~ired--~~~~~~V~gl~~v~V~s~eea~~~--------------------------------------------- 279 (690)
...+.++++ ..++++|.|++++.|.+++|++.+
T Consensus 163 ~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~ 242 (352)
T cd01364 163 NKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKI 242 (352)
T ss_pred CccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccEEE
Confidence 134678898 689999999999999999999776
Q ss_pred --------------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEE
Q psy2748 280 --------------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMI 333 (690)
Q Consensus 280 --------------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mI 333 (690)
+..||+||++|++||.+|..++ .||||||||||+||+++|||+++|+||
T Consensus 243 s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-----~~vpyR~S~LT~lL~~~Lgg~s~t~~I 317 (352)
T cd01364 243 GKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS-----PHIPYRESKLTRLLQDSLGGRTKTSII 317 (352)
T ss_pred EEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-----CCCCCcccHHHHHHHHhcCCCceEEEE
Confidence 4579999999999999998865 799999999999999999999999999
Q ss_pred EEeCCCCCCHHHHhhHHHHHhhhhceeeccCCCC
Q psy2748 334 VCVNPRVEDYDENLAVMKFAEMSQEVQISKALPS 367 (690)
Q Consensus 334 vcVsP~~~~~~ETl~TLrFA~rak~I~~~~~v~~ 367 (690)
+||+|...+++||++||+||.+|++|+|.|.+|.
T Consensus 318 ~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 318 ATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred EEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 9999999999999999999999999999998764
No 19
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=9.1e-58 Score=492.26 Aligned_cols=254 Identities=28% Similarity=0.511 Sum_probs=223.5
Q ss_pred CCEEEEEEecCCCCCCC----CceEEEe-cCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHHH
Q psy2748 23 DPLQVFCRIRPMDNSYD----ESCISVV-SDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVAN 97 (690)
Q Consensus 23 ~~V~V~~RvRP~~~~e~----~~~i~v~-~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~~ 97 (690)
++|+|+|||||+...+. .+++.+. +..+|.+.+|... .......|.||+||+++++|++||+.++.|+|++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~ 76 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKAD----AKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDS 76 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCccc----ccCCCceeeeccccCCCccHHHHHHHHHHHHHHH
Confidence 57999999999986542 3455553 4567888877542 2245678999999999999999999999999999
Q ss_pred HhccCCeEEEEecccCCCCeeecCCCCC---CCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHHH
Q psy2748 98 LIHAKNGLLLTYGVTGSGKTYTMNGTNS---DGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAE 174 (690)
Q Consensus 98 ~l~G~N~~IfaYGqTGSGKTyTm~G~~~---~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~ 174 (690)
+++|+|+||||||+|||||||||+|+.. ++|||||++++||+.+...
T Consensus 77 ~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~------------------------------ 126 (333)
T cd01371 77 VLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKA------------------------------ 126 (333)
T ss_pred HhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhc------------------------------
Confidence 9999999999999999999999999887 8999999999999988651
Q ss_pred hhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEee
Q psy2748 175 MNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIRE 254 (690)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ire 254 (690)
.+..|.|++||+|||||.|||||.+... ..+.+++
T Consensus 127 -------------------------------------~~~~~~v~~S~~Eiy~e~v~DLL~~~~~--------~~l~i~~ 161 (333)
T cd01371 127 -------------------------------------ENVQFLVRVSYLEIYNEEVRDLLGKDQK--------KKLELKE 161 (333)
T ss_pred -------------------------------------cCccEEEEEEEEEeeCCeeeeCCCCCCC--------CceeEEE
Confidence 2246899999999999999999986542 3467899
Q ss_pred cCCCCeEEeeeEEEEecCchhhhhh-------------------------------------------------------
Q psy2748 255 DGDKNMFVHGVNEIEVTTPDEAFQS------------------------------------------------------- 279 (690)
Q Consensus 255 d~~~~~~V~gl~~v~V~s~eea~~~------------------------------------------------------- 279 (690)
++.++++|.|++++.|.+++|++.+
T Consensus 162 ~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAG 241 (333)
T cd01371 162 RPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAG 241 (333)
T ss_pred cCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCC
Confidence 9999999999999999999998876
Q ss_pred ----------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCH
Q psy2748 280 ----------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDY 343 (690)
Q Consensus 280 ----------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~ 343 (690)
+.+||+||++|++||.+|.+++ ..||||||||||+||+++|+|+++|+||+||+|...++
T Consensus 242 sEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~----~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~ 317 (333)
T cd01371 242 SERQSKTGATGDRLKEATKINLSLSALGNVISALVDGK----STHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNY 317 (333)
T ss_pred CCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCC----CCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccH
Confidence 3579999999999999998743 36999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHhhhhce
Q psy2748 344 DENLAVMKFAEMSQEV 359 (690)
Q Consensus 344 ~ETl~TLrFA~rak~I 359 (690)
+||++||+||++|+.|
T Consensus 318 ~eTl~TL~fa~r~r~I 333 (333)
T cd01371 318 DETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999999999976
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=5.5e-56 Score=477.75 Aligned_cols=255 Identities=33% Similarity=0.580 Sum_probs=226.8
Q ss_pred CCCEEEEEEecCCCCCC---CCceEEEecC--cEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHH
Q psy2748 22 SDPLQVFCRIRPMDNSY---DESCISVVSD--TTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVA 96 (690)
Q Consensus 22 ~~~V~V~~RvRP~~~~e---~~~~i~v~~~--~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~ 96 (690)
+|.|+|||||||+...+ ..+++.+.++ .+|.+..+ ......|.||+||+++++|++||+.+ .|+|+
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~f~fD~vf~~~~~q~~v~~~v-~p~v~ 71 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG--------TGKKKSFSFDRVFDPDASQEDVFEEV-SPLVQ 71 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCC--------CCCceEEecCEEECCCCCHHHHHHHH-HHHHH
Confidence 47899999999998775 4567777776 67776654 13467899999999999999999985 89999
Q ss_pred HHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHHHhh
Q psy2748 97 NLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMN 176 (690)
Q Consensus 97 ~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~~~ 176 (690)
++++|+|+||||||+|||||||||+|+..++||+||++++||+.+....
T Consensus 72 ~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~------------------------------- 120 (329)
T cd01366 72 SALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELK------------------------------- 120 (329)
T ss_pred HHhCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhh-------------------------------
Confidence 9999999999999999999999999999999999999999999887621
Q ss_pred cccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEeecC
Q psy2748 177 GELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDG 256 (690)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ired~ 256 (690)
+.+..|.|.+||+|||||.+||||.+... ....+.+++++
T Consensus 121 ----------------------------------~~~~~~~v~~S~~EIy~e~v~DLL~~~~~------~~~~l~i~~~~ 160 (329)
T cd01366 121 ----------------------------------EKGWSYTITASMLEIYNETIRDLLATKPA------PKKKLEIKHDS 160 (329)
T ss_pred ----------------------------------ccCceEEEEEEEEEEECCEeEECCCCCcC------CCCceEEEECC
Confidence 12456899999999999999999987631 12456799999
Q ss_pred CCCeEEeeeEEEEecCchhhhhh---------------------------------------------------------
Q psy2748 257 DKNMFVHGVNEIEVTTPDEAFQS--------------------------------------------------------- 279 (690)
Q Consensus 257 ~~~~~V~gl~~v~V~s~eea~~~--------------------------------------------------------- 279 (690)
.+++++.|+++++|.+++|++.+
T Consensus 161 ~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGsE~~~ 240 (329)
T cd01366 161 KGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSERLK 240 (329)
T ss_pred CCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCCcccc
Confidence 99999999999999999999877
Q ss_pred -----------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHHHHhh
Q psy2748 280 -----------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLA 348 (690)
Q Consensus 280 -----------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl~ 348 (690)
+..||+||++|++||.+|+.++ .||||||||||+||+++|||+++|+||+||+|...+++||++
T Consensus 241 ~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~-----~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~ 315 (329)
T cd01366 241 KSGATGDRLKEAQAINKSLSALGDVISALRSKD-----SHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLC 315 (329)
T ss_pred cccccchhhHhHhhhhhHHHHHHHHHHHHhcCC-----CcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHH
Confidence 4579999999999999998864 899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhceee
Q psy2748 349 VMKFAEMSQEVQI 361 (690)
Q Consensus 349 TLrFA~rak~I~~ 361 (690)
||+||.++++|++
T Consensus 316 tL~~a~~~~~i~~ 328 (329)
T cd01366 316 SLRFASRVRSVEL 328 (329)
T ss_pred HHHHHHHhhcccC
Confidence 9999999999976
No 21
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=3.3e-56 Score=481.70 Aligned_cols=251 Identities=31% Similarity=0.565 Sum_probs=219.0
Q ss_pred CEEEEEEecCCCCCCC----CceEEEecC-cEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHHHH
Q psy2748 24 PLQVFCRIRPMDNSYD----ESCISVVSD-TTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANL 98 (690)
Q Consensus 24 ~V~V~~RvRP~~~~e~----~~~i~v~~~-~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~ 98 (690)
+|+||||+||+...+. ..|+.+..+ ..+.+.+ .+.|.||+||+++++|++||+.++.|+|+++
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~------------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~ 69 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT------------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGL 69 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC------------CcEEeccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 7999999999986652 356665443 3444432 4579999999999999999999999999999
Q ss_pred hccCCeEEEEecccCCCCeeecCCCC------CCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHH
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTMNGTN------SDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQ 172 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm~G~~------~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~ 172 (690)
++|+|+||||||+|||||||||+|+. .++|||||++++||+.++..
T Consensus 70 ~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~---------------------------- 121 (341)
T cd01372 70 FEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEK---------------------------- 121 (341)
T ss_pred hCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhc----------------------------
Confidence 99999999999999999999999975 46999999999999998762
Q ss_pred HHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceE
Q psy2748 173 AEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLI 252 (690)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~i 252 (690)
.....|.|.+||+|||||.|||||.+... ....+.+
T Consensus 122 --------------------------------------~~~~~~~v~vS~~EIy~e~v~DLL~~~~~------~~~~l~i 157 (341)
T cd01372 122 --------------------------------------KDEPDFQLKVSFLELYNEEVRDLLSPSTS------EKSPIQI 157 (341)
T ss_pred --------------------------------------cccceEEEEEEEEEeECCeeecCCCCccc------CCCCceE
Confidence 12346899999999999999999987641 1135679
Q ss_pred eecCCCCeEEeeeEEEEecCchhhhhh-----------------------------------------------------
Q psy2748 253 REDGDKNMFVHGVNEIEVTTPDEAFQS----------------------------------------------------- 279 (690)
Q Consensus 253 red~~~~~~V~gl~~v~V~s~eea~~~----------------------------------------------------- 279 (690)
+++..++++|.|++++.|.+++|++.+
T Consensus 158 ~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s 237 (341)
T cd01372 158 REDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTS 237 (341)
T ss_pred EECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeE
Confidence 999999999999999999999998765
Q ss_pred -------------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEE
Q psy2748 280 -------------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIV 334 (690)
Q Consensus 280 -------------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIv 334 (690)
+..||+||++|++||.+|..++. +..||||||||||+||+++|||+++|+||+
T Consensus 238 ~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~--~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~ 315 (341)
T cd01372 238 KFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESK--KGSHVPYRDSKLTRLLQDSLGGNSHTLMIA 315 (341)
T ss_pred EEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCC--CCCCCCCcccHHHHHHHHhcCCCceEEEEE
Confidence 23689999999999999998763 347999999999999999999999999999
Q ss_pred EeCCCCCCHHHHhhHHHHHhhhhcee
Q psy2748 335 CVNPRVEDYDENLAVMKFAEMSQEVQ 360 (690)
Q Consensus 335 cVsP~~~~~~ETl~TLrFA~rak~I~ 360 (690)
||+|...+++|||+||+||.+|++|+
T Consensus 316 ~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 316 CVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999985
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.3e-54 Score=468.08 Aligned_cols=258 Identities=34% Similarity=0.626 Sum_probs=231.1
Q ss_pred CEEEEEEecCCCCCC----CCceEEEecCc--EEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHHH
Q psy2748 24 PLQVFCRIRPMDNSY----DESCISVVSDT--TVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVAN 97 (690)
Q Consensus 24 ~V~V~~RvRP~~~~e----~~~~i~v~~~~--tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~~ 97 (690)
+|+|+|||||+...+ ..+|+.+.++. +|.+..+.. ......|.||+||+++++|++||+.++.|+|++
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~ 74 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKN------RKEEKKFTFDKVFGATASQEDVFEETAAPLVDS 74 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCC------CCCCeEEecCEEECCCCChHHHHHHHHHHHHHH
Confidence 589999999998765 34678776653 777776544 245678999999999999999999999999999
Q ss_pred HhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHHHhhc
Q psy2748 98 LIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNG 177 (690)
Q Consensus 98 ~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~~~~ 177 (690)
+++|+|+|||+||+|||||||||+|+..++|||||++++||+.+...
T Consensus 75 ~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~--------------------------------- 121 (335)
T smart00129 75 VLEGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKL--------------------------------- 121 (335)
T ss_pred HhcCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhc---------------------------------
Confidence 99999999999999999999999999999999999999999988652
Q ss_pred ccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEeecCC
Q psy2748 178 ELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGD 257 (690)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ired~~ 257 (690)
.++..|+|++||+|||||.+||||++.. ..+.+++++.
T Consensus 122 ---------------------------------~~~~~~~v~~S~~ei~~e~v~DLL~~~~---------~~l~i~~~~~ 159 (335)
T smart00129 122 ---------------------------------EEGWQFQVKVSYLEIYNEKIRDLLNPSP---------KKLEIREDKK 159 (335)
T ss_pred ---------------------------------ccCceEEEEEEEEEEECCEEEECcCCCC---------CCcEEEECCC
Confidence 1245789999999999999999998654 3567899999
Q ss_pred CCeEEeeeEEEEecCchhhhhh----------------------------------------------------------
Q psy2748 258 KNMFVHGVNEIEVTTPDEAFQS---------------------------------------------------------- 279 (690)
Q Consensus 258 ~~~~V~gl~~v~V~s~eea~~~---------------------------------------------------------- 279 (690)
+++++.|++++.|.|++|++.+
T Consensus 160 ~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~ 239 (335)
T smart00129 160 GGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERA 239 (335)
T ss_pred CCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCcc
Confidence 9999999999999999999876
Q ss_pred ------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHHHHh
Q psy2748 280 ------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENL 347 (690)
Q Consensus 280 ------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl 347 (690)
+..||+||.+|++||.+|++++ +..+||||+|+||+||+++|+|+++++||+||+|...+|+||+
T Consensus 240 ~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~---~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl 316 (335)
T smart00129 240 SKTGAEGDRLKEAGNINKSLSALGNVINALADGQ---KSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETL 316 (335)
T ss_pred ccccChhHHHHhhchhhhHHHHHHHHHHHHHhcC---CCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHH
Confidence 3479999999999999998852 4589999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhceeeccCC
Q psy2748 348 AVMKFAEMSQEVQISKAL 365 (690)
Q Consensus 348 ~TLrFA~rak~I~~~~~v 365 (690)
+||+||+++++|++.|++
T Consensus 317 ~tL~~a~~~~~i~~~p~~ 334 (335)
T smart00129 317 STLRFASRAKEIKNKAIV 334 (335)
T ss_pred HHHHHHHHHhhcccCCCc
Confidence 999999999999998865
No 23
>KOG0239|consensus
Probab=100.00 E-value=2e-56 Score=512.52 Aligned_cols=274 Identities=32% Similarity=0.495 Sum_probs=237.9
Q ss_pred CCCCcccCCCCCCCCCCEEEEEEecCCCCCCCCc-e--EEEecC-cEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCCh
Q psy2748 8 KTPRKVAFSQNNGSSDPLQVFCRIRPMDNSYDES-C--ISVVSD-TTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQ 83 (690)
Q Consensus 8 ~~p~~~~~~~~~~~~~~V~V~~RvRP~~~~e~~~-~--i~v~~~-~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ 83 (690)
.+.|+.+++...+.+|+|+|||||||+..++... + +...++ ..+++..|..... .....|.||+||+|.++|
T Consensus 299 ~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~f~fdkVf~p~~sQ 374 (670)
T KOG0239|consen 299 KEERRKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDK----LEPQSFKFDKVFGPLASQ 374 (670)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCC----CccccceeeeecCCcccH
Confidence 3567778888899999999999999999776553 2 222222 2467766655311 112269999999999999
Q ss_pred HHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCC-CCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceeh
Q psy2748 84 KQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG-TNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQ 162 (690)
Q Consensus 84 ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G-~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~ 162 (690)
++||..+ .|+|+++|+|||+||||||||||||||||.| ++.++|||||+++.||+.+....
T Consensus 375 ~~VF~e~-~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~----------------- 436 (670)
T KOG0239|consen 375 DDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLK----------------- 436 (670)
T ss_pred HHHHHHH-HHHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhc-----------------
Confidence 9999998 8999999999999999999999999999999 79999999999999999987731
Q ss_pred hHHHHHHHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCc
Q psy2748 163 SQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNN 242 (690)
Q Consensus 163 ~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~ 242 (690)
.+..|.+.++|+|||||.|+|||.+...
T Consensus 437 -------------------------------------------------~g~~y~~~~s~~EIYNe~i~DlL~~~~~--- 464 (670)
T KOG0239|consen 437 -------------------------------------------------SGWKYDKTVSMLEIYNEAIRDLLSDESY--- 464 (670)
T ss_pred -------------------------------------------------cCceEEeeeehhHHHHHHHHHhcccccc---
Confidence 2457999999999999999999987641
Q ss_pred cccccccceEeecCCCCeEEeeeEEEEecCchhhhhh-------------------------------------------
Q psy2748 243 ARIQLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQS------------------------------------------- 279 (690)
Q Consensus 243 ~~~~~~~~~ired~~~~~~V~gl~~v~V~s~eea~~~------------------------------------------- 279 (690)
.....|+.+.+++.+|.+++.+.|.+.++...+
T Consensus 465 ----~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g 540 (670)
T KOG0239|consen 465 ----VGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTG 540 (670)
T ss_pred ----ccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCccccccc
Confidence 135679999999999999999999999998876
Q ss_pred -------------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEE
Q psy2748 280 -------------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIV 334 (690)
Q Consensus 280 -------------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIv 334 (690)
+.+||+||++||.||.+|+..+ .||||||||||+||+++|||++||+|+|
T Consensus 541 ~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~-----~HiPyRNSKLT~lLq~sLGG~sKTLmfv 615 (670)
T KOG0239|consen 541 VLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKR-----SHIPYRNSKLTQLLQDSLGGDSKTLMFV 615 (670)
T ss_pred ceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcC-----CCCcccccchHHHhHhhhCCccceeeEE
Confidence 7899999999999999999854 8999999999999999999999999999
Q ss_pred EeCCCCCCHHHHhhHHHHHhhhhceeeccC
Q psy2748 335 CVNPRVEDYDENLAVMKFAEMSQEVQISKA 364 (690)
Q Consensus 335 cVsP~~~~~~ETl~TLrFA~rak~I~~~~~ 364 (690)
+|||...++.||+++|+||.++..+...+.
T Consensus 616 ~isP~~~~~~Etl~sL~FA~rv~~~~lG~a 645 (670)
T KOG0239|consen 616 NISPAAAALFETLCSLRFATRVRSVELGSA 645 (670)
T ss_pred EeCccHHHHhhhhhccchHHHhhceecccc
Confidence 999999999999999999999999987665
No 24
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=4.3e-54 Score=462.54 Aligned_cols=255 Identities=38% Similarity=0.660 Sum_probs=228.6
Q ss_pred CEEEEEEecCCCCCC---CCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHHHHhc
Q psy2748 24 PLQVFCRIRPMDNSY---DESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIH 100 (690)
Q Consensus 24 ~V~V~~RvRP~~~~e---~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~ 100 (690)
+|+|||||||+...+ ...|+.+.++++|.+.+|... .......|.||+||+++++|++||+.++.|+|+++++
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~ 76 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDG----RKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLE 76 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccc----cCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhC
Confidence 599999999998753 678899888899999987653 2345789999999999999999999999999999999
Q ss_pred cCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHHHhhcccc
Q psy2748 101 AKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELT 180 (690)
Q Consensus 101 G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~~~~~~~ 180 (690)
|+|+|||+||+|||||||||+|+..++|||||++++||+.+....
T Consensus 77 G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~----------------------------------- 121 (328)
T cd00106 77 GYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERK----------------------------------- 121 (328)
T ss_pred CCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhcc-----------------------------------
Confidence 999999999999999999999999999999999999999887621
Q ss_pred cCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEeecCCCCe
Q psy2748 181 KRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNM 260 (690)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ired~~~~~ 260 (690)
..+..|.|.+||+|||||.|||||++... ...+.+++++.+++
T Consensus 122 ------------------------------~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~-------~~~l~i~~~~~~~~ 164 (328)
T cd00106 122 ------------------------------EKNKSFSVSVSYLEIYNEKVYDLLSPEPP-------SKPLSLREDPKGGV 164 (328)
T ss_pred ------------------------------ccCceEEEEEEEEEEECCEeEECCCCCCC-------CCCcEEEEcCCCCE
Confidence 02446899999999999999999998621 14567999999999
Q ss_pred EEeeeEEEEecCchhhhhh-------------------------------------------------------------
Q psy2748 261 FVHGVNEIEVTTPDEAFQS------------------------------------------------------------- 279 (690)
Q Consensus 261 ~V~gl~~v~V~s~eea~~~------------------------------------------------------------- 279 (690)
++.|++++.|.|.+|++.+
T Consensus 165 ~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~ 244 (328)
T cd00106 165 YVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSERAKKT 244 (328)
T ss_pred EEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCCccccc
Confidence 9999999999999999876
Q ss_pred ---------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHHHHhhHH
Q psy2748 280 ---------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVM 350 (690)
Q Consensus 280 ---------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl~TL 350 (690)
+..||+||++|++||.+|+.++. ..|||||+||||+||+++|+|+++++||+||+|...+++||++||
T Consensus 245 ~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~---~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL 321 (328)
T cd00106 245 GAEGDRLKEAKNINKSLSALGNVISALSSGQK---KKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTL 321 (328)
T ss_pred CCchhhhHhHHhhhhhHHHHHHHHHHHHhcCC---CCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHH
Confidence 34599999999999999998652 489999999999999999999999999999999999999999999
Q ss_pred HHHhhhh
Q psy2748 351 KFAEMSQ 357 (690)
Q Consensus 351 rFA~rak 357 (690)
+||++|+
T Consensus 322 ~~a~r~~ 328 (328)
T cd00106 322 RFASRAK 328 (328)
T ss_pred HHHHhcC
Confidence 9999985
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2.2e-53 Score=458.35 Aligned_cols=223 Identities=39% Similarity=0.666 Sum_probs=199.0
Q ss_pred CCcceEEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCCC--CCCCChHHHHHHHHHHHhc
Q psy2748 65 NNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGT--NSDGGIMMRCIDVLFNSIG 142 (690)
Q Consensus 65 ~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~--~~~~GIiPR~l~~LF~~i~ 142 (690)
......|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+ ..++|||||++++||+.+.
T Consensus 37 ~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~ 116 (335)
T PF00225_consen 37 SQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIE 116 (335)
T ss_dssp TTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHH
T ss_pred CCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEeeccccccccccccccccccccchhhhHHHHHhhhhc
Confidence 35678999999999999999999999999999999999999999999999999999999 8899999999999999987
Q ss_pred ccCCCCccccCCCCCcceehhHHHHHHHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEE
Q psy2748 143 RYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSY 222 (690)
Q Consensus 143 ~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSy 222 (690)
..... ....|.|.+||
T Consensus 117 ~~~~~----------------------------------------------------------------~~~~~~v~vS~ 132 (335)
T PF00225_consen 117 ERKEK----------------------------------------------------------------SGYEFSVSVSY 132 (335)
T ss_dssp HHTTT----------------------------------------------------------------STEEEEEEEEE
T ss_pred ccccc----------------------------------------------------------------ccccccccccc
Confidence 63211 13579999999
Q ss_pred EEEEccceeecccCCCCCCccccccccceEeecCCCC-eEEeeeEEEEecCchhhhhh----------------------
Q psy2748 223 IEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKN-MFVHGVNEIEVTTPDEAFQS---------------------- 279 (690)
Q Consensus 223 iEIYNe~v~DLL~~~~~~~~~~~~~~~~~ired~~~~-~~V~gl~~v~V~s~eea~~~---------------------- 279 (690)
+|||||.|||||.+.... ....+.+++++..+ ++|.|++++.|.+.++++.+
T Consensus 133 ~EIy~e~v~DLL~~~~~~-----~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRS 207 (335)
T PF00225_consen 133 LEIYNEKVYDLLSPNNSK-----SRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRS 207 (335)
T ss_dssp EEEETTEEEETTSTTSSS-----TTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGS
T ss_pred hhhhhhhhhhhcCccccc-----cccccceeeccccccceeeccccccccccccccccccchhhcccccccccccccccc
Confidence 999999999999987410 11356799999876 99999999999999999877
Q ss_pred ---------------------------------------------------ccccccccchHHHHHHHHhhhcccCCCCC
Q psy2748 280 ---------------------------------------------------IGNINNSLMTLRTCLEILRENQLQGTNKI 308 (690)
Q Consensus 280 ---------------------------------------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~ 308 (690)
+..||+||++|++||.+|+.+ +...|
T Consensus 208 H~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~---~~~~~ 284 (335)
T PF00225_consen 208 HAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG---SKQSH 284 (335)
T ss_dssp EEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT---TSTSS
T ss_pred ccccccccccccccccccccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhcc---ccchh
Confidence 345999999999999999997 34489
Q ss_pred CCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHHHHhhHHHHHhhhhce
Q psy2748 309 PPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEV 359 (690)
Q Consensus 309 VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl~TLrFA~rak~I 359 (690)
|||||||||+||+|+|+|+|+|+||+||+|...+|+||++||+||+++++|
T Consensus 285 vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 285 VPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp SCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred hhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999987
No 26
>KOG0246|consensus
Probab=100.00 E-value=3.8e-49 Score=426.82 Aligned_cols=263 Identities=29% Similarity=0.462 Sum_probs=229.3
Q ss_pred CCCEEEEEEecCCCCCC----CCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHHH
Q psy2748 22 SDPLQVFCRIRPMDNSY----DESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVAN 97 (690)
Q Consensus 22 ~~~V~V~~RvRP~~~~e----~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~~ 97 (690)
...|.|+||-||++..+ +...|.|.+.+.+.++.|.....-..--..+.|.||++|+..++++.||..+++|||..
T Consensus 207 ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~ 286 (676)
T KOG0246|consen 207 EHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKT 286 (676)
T ss_pred cceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHH
Confidence 45689999999999765 45678888889999998877511111134568999999999999999999999999999
Q ss_pred HhccCCeEEEEecccCCCCeeecCCCCC------CCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHH
Q psy2748 98 LIHAKNGLLLTYGVTGSGKTYTMNGTNS------DGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQE 171 (690)
Q Consensus 98 ~l~G~N~~IfaYGqTGSGKTyTm~G~~~------~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~ 171 (690)
+++|--+|.||||||||||||||.|.-. ..||.-++..++|..+..-..
T Consensus 287 IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y------------------------- 341 (676)
T KOG0246|consen 287 IFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTY------------------------- 341 (676)
T ss_pred HHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccch-------------------------
Confidence 9999999999999999999999988542 469999999999988765110
Q ss_pred HHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccce
Q psy2748 172 QAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRL 251 (690)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ 251 (690)
....+.|++||+|||+-.|||||++.. .+.
T Consensus 342 ----------------------------------------~~~~l~v~~tFFEIYgGKvfDLL~~k~----------KLr 371 (676)
T KOG0246|consen 342 ----------------------------------------RKLDLKVYVTFFEIYGGKVYDLLNDKK----------KLR 371 (676)
T ss_pred ----------------------------------------hhcceEEEEEEEEEeCcchhhhhcccc----------ceE
Confidence 122468999999999999999998633 467
Q ss_pred EeecCCCCeEEeeeEEEEecCchhhhhh----------------------------------------------------
Q psy2748 252 IREDGDKNMFVHGVNEIEVTTPDEAFQS---------------------------------------------------- 279 (690)
Q Consensus 252 ired~~~~~~V~gl~~v~V~s~eea~~~---------------------------------------------------- 279 (690)
+.||++..+.|-|+.+.+|.+.+|++++
T Consensus 372 vLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~~~k~hGKfSlIDLAGnER 451 (676)
T KOG0246|consen 372 VLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHGEFKLHGKFSLIDLAGNER 451 (676)
T ss_pred EeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCCcceeEeEEEEEEccCCcc
Confidence 8999999999999999999999999988
Q ss_pred --------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCC-CceeEEEEEeCCCCCCHH
Q psy2748 280 --------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTG-DGDVRMIVCVNPRVEDYD 344 (690)
Q Consensus 280 --------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgG-nskt~mIvcVsP~~~~~~ 344 (690)
+..||+||++|..||.+|..++ .|+|||.||||.+|+|||-| |++|+||+||||....++
T Consensus 452 GaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk-----~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScE 526 (676)
T KOG0246|consen 452 GADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-----SHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCE 526 (676)
T ss_pred CCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCC-----CCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhh
Confidence 5679999999999999998877 89999999999999999988 999999999999999999
Q ss_pred HHhhHHHHHhhhhceeeccC
Q psy2748 345 ENLAVMKFAEMSQEVQISKA 364 (690)
Q Consensus 345 ETl~TLrFA~rak~I~~~~~ 364 (690)
.||+|||||+|+|+......
T Consensus 527 hTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 527 HTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred hhHHHHHHHHHHHhhcCCCC
Confidence 99999999999999876443
No 27
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.9e-46 Score=422.22 Aligned_cols=261 Identities=32% Similarity=0.512 Sum_probs=222.8
Q ss_pred CCCCCCCCEEEEEEecCCCCCCCCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHH
Q psy2748 17 QNNGSSDPLQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVA 96 (690)
Q Consensus 17 ~~~~~~~~V~V~~RvRP~~~~e~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~ 96 (690)
.+...-+.++++++..|-..+. ..+...+...+.+. ......|.||+||++.++|++||+..+.|+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----------~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~ 83 (568)
T COG5059 16 RNEKSVSDIKSTIRIIPGELGE--RLINTSKKSHVSLE----------KSKEGTYAFDKVFGPSATQEDVYEETIKPLID 83 (568)
T ss_pred cceeeecCceEEEeecCCCcch--heeecccccccccc----------cccceEEEEeeccCCCCcHHHHHHHhhhhHHH
Confidence 3445567788888888854332 11111122222111 11256899999999999999999999999999
Q ss_pred HHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHHHhh
Q psy2748 97 NLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMN 176 (690)
Q Consensus 97 ~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~~~ 176 (690)
+++.|||+||||||||||||||||.|...++||||+++..||+.+....
T Consensus 84 ~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~------------------------------- 132 (568)
T COG5059 84 SLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLS------------------------------- 132 (568)
T ss_pred HHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcc-------------------------------
Confidence 9999999999999999999999999999999999999999999887621
Q ss_pred cccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEeecC
Q psy2748 177 GELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDG 256 (690)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ired~ 256 (690)
.+..|.|.+||+|||||.++|||.+... .+.++++.
T Consensus 133 -----------------------------------~~~~~~v~is~lEiYnEk~~DLl~~~~~---------~~~~~~~~ 168 (568)
T COG5059 133 -----------------------------------MTKDFAVSISYLEIYNEKIYDLLSPNEE---------SLNIREDS 168 (568)
T ss_pred -----------------------------------cCcceeeEeehhHHHhhHHHhhccCccc---------cccccccC
Confidence 2445899999999999999999998763 26789999
Q ss_pred CCCeEEeeeEEEEecCchhhhhh---------------------------------------------------------
Q psy2748 257 DKNMFVHGVNEIEVTTPDEAFQS--------------------------------------------------------- 279 (690)
Q Consensus 257 ~~~~~V~gl~~v~V~s~eea~~~--------------------------------------------------------- 279 (690)
..++.|.|++...+.+.+|.+.+
T Consensus 169 ~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~ 248 (568)
T COG5059 169 LLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAA 248 (568)
T ss_pred CCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccc
Confidence 99999999999999999999877
Q ss_pred -----------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHHHHhh
Q psy2748 280 -----------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLA 348 (690)
Q Consensus 280 -----------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl~ 348 (690)
+.+||+||.+||+||.+|... +...|||||+|||||||+++|||+++|+|||||+|...+++||++
T Consensus 249 ~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~---~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~ 325 (568)
T COG5059 249 RTGNRGTRLKEGASINKSLLTLGNVINALGDK---KKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETIN 325 (568)
T ss_pred hhhcccchhhhhhhhHhhHHHHHHHHHHHhcc---ccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHH
Confidence 568999999999999999874 234899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhceeeccCCCC
Q psy2748 349 VMKFAEMSQEVQISKALPS 367 (690)
Q Consensus 349 TLrFA~rak~I~~~~~v~~ 367 (690)
||+||.+|+.|++.+..+.
T Consensus 326 tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 326 TLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred HHHHHHHHhhcCCcccccC
Confidence 9999999999999888774
No 28
>KOG0244|consensus
Probab=100.00 E-value=6.2e-45 Score=414.81 Aligned_cols=223 Identities=30% Similarity=0.519 Sum_probs=200.3
Q ss_pred ceEEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCCC----CCCCChHHHHHHHHHHHhcc
Q psy2748 68 EVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGT----NSDGGIMMRCIDVLFNSIGR 143 (690)
Q Consensus 68 ~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~----~~~~GIiPR~l~~LF~~i~~ 143 (690)
..+|+||+||.....|.++|+.++.|+++.+++|||++++|||||||||||||.+. ..+.|+|||++.+||..|..
T Consensus 31 ~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~ 110 (913)
T KOG0244|consen 31 DASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGK 110 (913)
T ss_pred CcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCceeecccccccccccCCcCcchHHHHHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999887 33469999999999999987
Q ss_pred cCCCCccccCCCCCcceehhHHHHHHHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEE
Q psy2748 144 YQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYI 223 (690)
Q Consensus 144 ~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyi 223 (690)
.+ ...|.|.|+|+
T Consensus 111 ~~-------------------------------------------------------------------~~~f~i~vs~v 123 (913)
T KOG0244|consen 111 TE-------------------------------------------------------------------SFVFRITVSFV 123 (913)
T ss_pred hh-------------------------------------------------------------------ccceeeeeeee
Confidence 21 24588999999
Q ss_pred EEEccceeecccCCCCCCccccccccceEeecCCCCeEEeeeEEEEecCchhhhhh------------------------
Q psy2748 224 EIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQS------------------------ 279 (690)
Q Consensus 224 EIYNe~v~DLL~~~~~~~~~~~~~~~~~ired~~~~~~V~gl~~v~V~s~eea~~~------------------------ 279 (690)
||||+.|+|||.+.... ....+++ +.+++.+.|++++.|.+..+.++.
T Consensus 124 ely~e~v~dl~~~~~~~-------~~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshA 195 (913)
T KOG0244|consen 124 ELYNEEVLDLLKPSRLK-------ANIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHA 195 (913)
T ss_pred eccchhhhhhcChhhhh-------hceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhH
Confidence 99999999999854421 2255667 778899999999999998887765
Q ss_pred ---------------------------------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCc
Q psy2748 280 ---------------------------------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRES 314 (690)
Q Consensus 280 ---------------------------------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdS 314 (690)
+.+||.+|++||+||.+|.+.+. ..|||||||
T Consensus 196 ifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk---~~~vpyRdS 272 (913)
T KOG0244|consen 196 IFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK---GGEVPYRDS 272 (913)
T ss_pred HHHHHHHHHHHhhccchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc---CCcccchHH
Confidence 67899999999999999999773 369999999
Q ss_pred hhhhcccccCCCCceeEEEEEeCCCCCCHHHHhhHHHHHhhhhceeeccCCCCc
Q psy2748 315 KLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQISKALPSR 368 (690)
Q Consensus 315 KLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl~TLrFA~rak~I~~~~~v~~~ 368 (690)
|||+||||+||||+.|+||+||||+..+..||++||+||.||+.|+|++.+|.+
T Consensus 273 kltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d 326 (913)
T KOG0244|consen 273 KLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQD 326 (913)
T ss_pred HHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhccccccccc
Confidence 999999999999999999999999999999999999999999999999999874
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=5.7e-34 Score=283.03 Aligned_cols=178 Identities=28% Similarity=0.438 Sum_probs=119.0
Q ss_pred HHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHH
Q psy2748 86 VYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQV 165 (690)
Q Consensus 86 vF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~ 165 (690)
||+.++ |+|+.+++|+|+|||+||||||||||||+|+..++|||||+++++++.+..-.+.+.+.
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~~~~ll~~g~~~R~~~-------------- 72 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTDVIDLMDKGNANRTTA-------------- 72 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHHHHHHHhhcccccccc--------------
Confidence 999999 99999999999999999999999999999999999999999998777665522111000
Q ss_pred HHHHHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCcccc
Q psy2748 166 DILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI 245 (690)
Q Consensus 166 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~ 245 (690)
.. ..+........|+.=+++.++.. ..... .
T Consensus 73 --------------------~t-------------------~~N~~SSRsH~i~~i~v~~~~~~-----~~~~~-----~ 103 (186)
T cd01363 73 --------------------AT-------------------AMNEHSSRSHSVFRIHFGGKNAL-----ASATE-----Q 103 (186)
T ss_pred --------------------cc-------------------CCCCccCcccEEEEEEEEEeecC-----CCCcc-----c
Confidence 00 00001111222222222222211 00000 0
Q ss_pred ccccceEeecCCCCeEEeeeEEEEec-CchhhhhhccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccC
Q psy2748 246 QLNNRLIREDGDKNMFVHGVNEIEVT-TPDEAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYF 324 (690)
Q Consensus 246 ~~~~~~ired~~~~~~V~gl~~v~V~-s~eea~~~a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsL 324 (690)
...+.+. -+-+.|...+... ...+.+.++..||+||++|++||.+|.+++ .+|||||||||+||||+|
T Consensus 104 ~~~s~l~------lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~-----~~vpyr~SkLT~lL~~~L 172 (186)
T cd01363 104 PKVGKIN------LVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERD-----SHVPYRESKLTRLLQDSL 172 (186)
T ss_pred eeeeeEE------EEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCC-----CCCCCcccHHHHHHHHhc
Confidence 0000000 0111222222111 123456778999999999999999998865 799999999999999999
Q ss_pred CCCceeEEEEEeCC
Q psy2748 325 TGDGDVRMIVCVNP 338 (690)
Q Consensus 325 gGnskt~mIvcVsP 338 (690)
+||++|+||+||+|
T Consensus 173 ~g~~~t~~i~~vsP 186 (186)
T cd01363 173 GGNSRTLMVACISP 186 (186)
T ss_pred CCCCeEEEEEEeCc
Confidence 99999999999998
No 30
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.14 E-value=0.019 Score=64.84 Aligned_cols=47 Identities=30% Similarity=0.396 Sum_probs=33.5
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.|....-|.|.-+|-+-- ..||+.+-.|.-.- .-.|+|||||||||-
T Consensus 4 ~F~l~s~f~PaGDQP~AI----~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~A 50 (663)
T COG0556 4 PFKLHSPFKPAGDQPEAI----AELVEGIENGLKHQ-TLLGVTGSGKTFTMA 50 (663)
T ss_pred ceEeccCCCCCCCcHHHH----HHHHHHHhcCceee-EEeeeccCCchhHHH
Confidence 577778888888886543 44566665665433 357999999999994
No 31
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.75 E-value=0.059 Score=57.39 Aligned_cols=35 Identities=40% Similarity=0.646 Sum_probs=29.7
Q ss_pred HHHh-hHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 87 YSEV-AHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 87 F~~v-~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
|+.. ..|++..+++-.+|+|+.-|+||||||.||-
T Consensus 108 ~e~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 108 LEELGLPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred HHHcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 4444 4668888999999999999999999999983
No 32
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.60 E-value=0.21 Score=56.81 Aligned_cols=30 Identities=40% Similarity=0.588 Sum_probs=26.2
Q ss_pred HHHHHHhccCCeEEEEecccCCCCeeecCC
Q psy2748 93 PLVANLIHAKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 93 plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 122 (690)
..+..+++.-+|.|+.-|+||||||.||+.
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 355667889999999999999999999965
No 33
>PRK06893 DNA replication initiation factor; Validated
Probab=91.35 E-value=0.15 Score=52.47 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=32.5
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 122 (690)
.++||..++... .. .+.-+.+.+-.++|..++-||++|+||||-+.+
T Consensus 12 ~~~fd~f~~~~~-~~-----~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 12 DETLDNFYADNN-LL-----LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred cccccccccCCh-HH-----HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 478999986542 11 122233444457888899999999999998854
No 34
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=90.81 E-value=0.12 Score=53.01 Aligned_cols=49 Identities=24% Similarity=0.387 Sum_probs=29.8
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.|+||.-+.. ..++..|..+ ..+.++--..+| .||-||.+|+||||-|.
T Consensus 4 ~~tFdnfv~g-~~N~~a~~~~-~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 4 KYTFDNFVVG-ESNELAYAAA-KAIAENPGERYN-PLFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp T-SCCCS--T-TTTHHHHHHH-HHHHHSTTTSSS-EEEEEESTTSSHHHHHH
T ss_pred CCccccCCcC-CcHHHHHHHH-HHHHhcCCCCCC-ceEEECCCCCCHHHHHH
Confidence 5899987743 3466666544 334444222234 47889999999999764
No 35
>PRK12377 putative replication protein; Provisional
Probab=86.46 E-value=0.53 Score=49.31 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=37.1
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 122 (690)
..+||.-......|..++..+ ..+++++..+. ..|+-||++|+||||.+.+
T Consensus 70 ~~tFdnf~~~~~~~~~a~~~a-~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQA-KSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred cCCcCCcccCChhHHHHHHHH-HHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 346776655556777777754 56777777654 4678899999999998864
No 36
>PRK06620 hypothetical protein; Validated
Probab=86.38 E-value=0.37 Score=49.28 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=32.8
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCC---eEEEEecccCCCCeeecC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKN---GLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N---~~IfaYGqTGSGKTyTm~ 121 (690)
.|+||..+... ++...|..+.. +.+. . |+| -.+|-||++||||||.+.
T Consensus 12 ~~tfd~Fvvg~-~N~~a~~~~~~-~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 12 KYHPDEFIVSS-SNDQAYNIIKN-WQCG-F-GVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCchhhEecc-cHHHHHHHHHH-HHHc-c-ccCCCcceEEEECCCCCCHHHHHH
Confidence 58898887554 45557776633 3221 1 444 358999999999999986
No 37
>PRK05642 DNA replication initiation factor; Validated
Probab=85.57 E-value=0.56 Score=48.50 Aligned_cols=46 Identities=17% Similarity=0.301 Sum_probs=28.6
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhcc---C-CeEEEEecccCCCCeeecCC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHA---K-NGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G---~-N~~IfaYGqTGSGKTyTm~G 122 (690)
.|+||.-+... +... ...++.+.++ . ...++-||.+|+||||-+.+
T Consensus 15 ~~tfdnF~~~~--~~~a-----~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 15 DATFANYYPGA--NAAA-----LGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred cccccccCcCC--hHHH-----HHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence 47888877432 2223 3333333332 1 24689999999999998743
No 38
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=85.02 E-value=0.42 Score=56.03 Aligned_cols=51 Identities=24% Similarity=0.316 Sum_probs=34.5
Q ss_pred eEEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCC
Q psy2748 69 VQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 69 ~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 122 (690)
..|+||..+.... ....|.. +..++++.-.++|. ||-||.+|+||||-+..
T Consensus 283 ~~~TFDnFvvG~s-N~~A~aa-a~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHAA-AVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHHH-HHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 4689988774443 3344433 34455544446775 89999999999998864
No 39
>PRK09087 hypothetical protein; Validated
Probab=84.59 E-value=0.53 Score=48.55 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=31.2
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.|+||.-+.... +..+|..+ +....-.+..++-||.+||||||-+.
T Consensus 17 ~~~~~~Fi~~~~-N~~a~~~l-----~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 17 AYGRDDLLVTES-NRAAVSLV-----DHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCChhceeecCc-hHHHHHHH-----HhcccCCCCeEEEECCCCCCHHHHHH
Confidence 478888885443 34466643 33222235569999999999999885
No 40
>PRK08116 hypothetical protein; Validated
Probab=84.34 E-value=0.62 Score=49.29 Aligned_cols=53 Identities=26% Similarity=0.401 Sum_probs=36.5
Q ss_pred ceEEEecEEeCCCCChHHHHHHhhHHHHHHHhc--cCCeEEEEecccCCCCeeecCC
Q psy2748 68 EVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIH--AKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 68 ~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~--G~N~~IfaYGqTGSGKTyTm~G 122 (690)
-..++||.-. ....+...|..+ ...++++.. ..|..|+-||.+|+||||.+..
T Consensus 79 ~~~~tFdnf~-~~~~~~~a~~~a-~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 79 FRNSTFENFL-FDKGSEKAYKIA-RKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred HHhcchhccc-CChHHHHHHHHH-HHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 4467888655 455666666654 556676654 3455689999999999998753
No 41
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=83.68 E-value=0.72 Score=44.27 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=22.5
Q ss_pred hHHHHHHhhHHHHHHHhcc-CCeEEEEecccCCCCeeecC
Q psy2748 83 QKQVYSEVAHPLVANLIHA-KNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 83 Q~evF~~v~~plV~~~l~G-~N~~IfaYGqTGSGKTyTm~ 121 (690)
|.++...+ ++.+-.+ ...-++..++||||||++|.
T Consensus 8 Q~~ai~~i----~~~~~~~~~~~~~ll~~~tGsGKT~~~~ 43 (184)
T PF04851_consen 8 QQEAIARI----INSLENKKEERRVLLNAPTGSGKTIIAL 43 (184)
T ss_dssp HHHHHHHH----HHHHHTTSGCSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHH----HHHHHhcCCCCCEEEEECCCCCcChhhh
Confidence 44544444 3333333 35566677899999999996
No 42
>PRK07952 DNA replication protein DnaC; Validated
Probab=83.59 E-value=0.83 Score=47.78 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=34.9
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 122 (690)
.++||.-......|..++..+ ...++++..|.. .++-||.+|+||||.+.+
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a-~~~~~~~~~~~~-~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKA-RQYVEEFDGNIA-SFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CCccccccCCCchHHHHHHHH-HHHHHhhccCCc-eEEEECCCCCCHHHHHHH
Confidence 456776544445676777765 445666655433 688999999999998854
No 43
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=82.51 E-value=0.75 Score=52.33 Aligned_cols=50 Identities=24% Similarity=0.342 Sum_probs=31.9
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 122 (690)
.|+||.-.... +++..|..+ ..++++-=..+| -+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa-~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAV-QTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHHH-HHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 48999877443 455566433 444432111245 478999999999998853
No 44
>PRK08084 DNA replication initiation factor; Provisional
Probab=81.92 E-value=0.96 Score=46.77 Aligned_cols=47 Identities=9% Similarity=0.333 Sum_probs=30.9
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 122 (690)
.|+||.-+.. .+...+..+.. +.. ......++-||++|+||||.+.+
T Consensus 18 ~~~fd~f~~~--~n~~a~~~l~~-~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 18 DETFASFYPG--DNDSLLAALQN-ALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred cCCccccccC--ccHHHHHHHHH-HHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 4688866644 56666665532 222 22234789999999999998854
No 45
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=81.80 E-value=0.79 Score=52.02 Aligned_cols=51 Identities=25% Similarity=0.365 Sum_probs=33.7
Q ss_pred ceEEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCC
Q psy2748 68 EVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 68 ~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 122 (690)
...|+||.-+.. .++...|..+ ..+.++- ..+|. +|-||.+|+||||-|..
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~-~~~~~~~-~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAA-LEVAKNP-GRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCcccccccC-CchHHHHHHH-HHHHhCc-CCCCe-EEEEcCCCCcHHHHHHH
Confidence 346899887743 4555566654 3333331 12665 99999999999998853
No 46
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=81.33 E-value=1.1 Score=48.88 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=29.3
Q ss_pred cEEeCCCCChHHHHHHhhHHHHHHHhc-cCCeEEEEecccCCCCeeec
Q psy2748 74 KKIFNVDVGQKQVYSEVAHPLVANLIH-AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 74 d~VF~~~asQ~evF~~v~~plV~~~l~-G~N~~IfaYGqTGSGKTyTm 120 (690)
|.+...-...++-++.+.. .+..++. +....++-||++|+|||+++
T Consensus 11 ~~~p~~l~gRe~e~~~l~~-~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAK-ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCCCCCcHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3333334455555555544 3344444 45678999999999999876
No 47
>PRK06526 transposase; Provisional
Probab=81.22 E-value=0.79 Score=48.17 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=27.3
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 122 (690)
.|.|+ +.+...+..+..-.....++ .+.| |+-||++|+||||.+.+
T Consensus 72 ~fd~~--~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 72 EFDFD--HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hccCc--cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 34444 33444554444433333332 3344 78999999999999864
No 48
>PRK10436 hypothetical protein; Provisional
Probab=81.16 E-value=0.78 Score=52.36 Aligned_cols=28 Identities=39% Similarity=0.572 Sum_probs=24.1
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.+..++..-+|.|+..|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 4556677789999999999999999985
No 49
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=80.91 E-value=1.2 Score=40.38 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=15.7
Q ss_pred CCeEEEEecccCCCCeeec
Q psy2748 102 KNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 102 ~N~~IfaYGqTGSGKTyTm 120 (690)
....++-+|.+|+|||+.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4456889999999999765
No 50
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=80.72 E-value=1.3 Score=48.97 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=28.1
Q ss_pred EEeCCCCChHHHHHHhhHHHHHHHhc-cCCeEEEEecccCCCCeeec
Q psy2748 75 KIFNVDVGQKQVYSEVAHPLVANLIH-AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 75 ~VF~~~asQ~evF~~v~~plV~~~l~-G~N~~IfaYGqTGSGKTyTm 120 (690)
.+.+.-..-++-++.+.. .+.+.+. +....++-||++|+|||+++
T Consensus 27 ~~P~~l~~Re~e~~~l~~-~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 27 YVPENLPHREEQIEELAF-ALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CcCCCCCCHHHHHHHHHH-HHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 333333445555555543 3334443 45567899999999999976
No 51
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.55 E-value=1.1 Score=47.16 Aligned_cols=35 Identities=40% Similarity=0.655 Sum_probs=29.2
Q ss_pred HHHhh-HHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 87 YSEVA-HPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 87 F~~v~-~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
|++.. .++++++.--+-|+|+..|.|||||+.||-
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 55553 557788888899999999999999999983
No 52
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=79.95 E-value=0.82 Score=53.52 Aligned_cols=28 Identities=43% Similarity=0.665 Sum_probs=24.1
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.+..++..-+|.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4556777888999999999999999974
No 53
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=79.89 E-value=0.93 Score=52.12 Aligned_cols=28 Identities=43% Similarity=0.614 Sum_probs=24.1
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.+..++..-.+.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4556777888999999999999999984
No 54
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=79.77 E-value=1.3 Score=52.73 Aligned_cols=46 Identities=30% Similarity=0.455 Sum_probs=33.0
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
|....=|.|.-.|..-|..+ ++.+-.|....+ .+|.|||||||||-
T Consensus 2 f~~~~~~~~~~~Q~~ai~~l----~~~~~~~~~~~~-l~Gvtgs~kt~~~a 47 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAKL----VEGLTDGEKHQT-LLGVTGSGKTFTMA 47 (655)
T ss_pred ceeccCCCCChHHHHHHHHH----HHhhhcCCCcEE-EECCCCcHHHHHHH
Confidence 55556678888998888764 445555643333 78999999999984
No 55
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=79.45 E-value=1.2 Score=49.90 Aligned_cols=51 Identities=24% Similarity=0.320 Sum_probs=31.0
Q ss_pred ceEEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 68 EVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 68 ~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
...|+||.-.. ...+...|..+ ..+.++.-..+| .+|-||.+|+||||.+.
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~-~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHH-HHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 34688988442 23455555443 334443211234 47789999999999874
No 56
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=79.25 E-value=1.1 Score=50.91 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=32.0
Q ss_pred ceEEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCC
Q psy2748 68 EVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 68 ~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 122 (690)
...|+||.-... ..+...|..+ ..+.++.-..+| .+|-||++|+||||.+..
T Consensus 116 ~~~~tfd~fv~g-~~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 116 NPKYTFDNFVVG-KSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCcccccccC-CCcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 356888884432 3455555544 334443222345 478899999999998853
No 57
>PRK08939 primosomal protein DnaI; Reviewed
Probab=79.01 E-value=1.2 Score=48.18 Aligned_cols=51 Identities=20% Similarity=0.172 Sum_probs=33.9
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHHHHhcc-CCeEEEEecccCCCCeeecCC
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHA-KNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G-~N~~IfaYGqTGSGKTyTm~G 122 (690)
.+|+.+-..+..+..++..+ ...++++..| ...-|+-||.+|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~-~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAA-LDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHH-HHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 45655543334666777643 5566666543 233589999999999998864
No 58
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=78.82 E-value=1.1 Score=49.70 Aligned_cols=28 Identities=39% Similarity=0.491 Sum_probs=21.5
Q ss_pred HHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 93 PLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 93 plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.+++.++. .++.++..|+||||||.||.
T Consensus 140 ~~~~~l~~-~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 140 DLFNSLLP-AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHHH
Confidence 34444443 57889999999999999984
No 59
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=78.71 E-value=1.4 Score=44.59 Aligned_cols=46 Identities=20% Similarity=0.430 Sum_probs=31.1
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.|+||..... .+..+++.+-. ++ .......|+-||++|+||||.+.
T Consensus 11 ~~~~~~~~~~--~~~~~~~~l~~-~~---~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 11 DPTFDNFYAG--GNAELLAALRQ-LA---AGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred chhhcCcCcC--CcHHHHHHHHH-HH---hcCCCCeEEEECCCCCCHHHHHH
Confidence 4777777632 45556655432 22 24567789999999999999873
No 60
>PF13245 AAA_19: Part of AAA domain
Probab=78.38 E-value=1.1 Score=38.12 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=19.1
Q ss_pred HHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
|...+. -+..+...|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 444555 45556669999999999984
No 61
>PRK08727 hypothetical protein; Validated
Probab=77.19 E-value=1.5 Score=45.27 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=27.3
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCC-eEEEEecccCCCCeeecCC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKN-GLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N-~~IfaYGqTGSGKTyTm~G 122 (690)
.|+||.-+.... + ....+ ..+..|+. -.|+-||.+|+||||-+..
T Consensus 15 ~~~f~~f~~~~~-n--~~~~~-----~~~~~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 15 DQRFDSYIAAPD-G--LLAQL-----QALAAGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred cCChhhccCCcH-H--HHHHH-----HHHHhccCCCeEEEECCCCCCHHHHHHH
Confidence 468888664333 2 22222 12222332 3599999999999998853
No 62
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=76.85 E-value=0.95 Score=40.53 Aligned_cols=17 Identities=41% Similarity=0.337 Sum_probs=14.7
Q ss_pred EEEecccCCCCeeecCC
Q psy2748 106 LLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 106 IfaYGqTGSGKTyTm~G 122 (690)
++.+|.||||||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 56899999999999854
No 63
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=76.75 E-value=1.9 Score=47.75 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=21.9
Q ss_pred HHHhhHHHHHHHhccCCeE-EEEecccCCCCeeec
Q psy2748 87 YSEVAHPLVANLIHAKNGL-LLTYGVTGSGKTYTM 120 (690)
Q Consensus 87 F~~v~~plV~~~l~G~N~~-IfaYGqTGSGKTyTm 120 (690)
++.++.- +..++.|.-.. ++.||.||+|||.|+
T Consensus 26 i~~l~~~-l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 26 INQLASF-LAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHH-HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 4444433 44455554333 999999999999876
No 64
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=76.61 E-value=1.3 Score=48.41 Aligned_cols=29 Identities=41% Similarity=0.692 Sum_probs=22.7
Q ss_pred HHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 93 PLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 93 plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
+.+..++.--.+.|+-.|+||||||.||.
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 34555555556889999999999999984
No 65
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=76.47 E-value=1.4 Score=48.74 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=20.2
Q ss_pred HhccCCeEEEEecccCCCCeeecC
Q psy2748 98 LIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 98 ~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
++.-..++|+..|+||||||.||.
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHHH
Confidence 444567999999999999999884
No 66
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=75.70 E-value=1.4 Score=46.10 Aligned_cols=27 Identities=37% Similarity=0.567 Sum_probs=20.2
Q ss_pred HHHHHhccC---CeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAK---NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~---N~~IfaYGqTGSGKTyTm 120 (690)
.+..++... .+.|+.-|.||||||.+|
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhhccccceEEEEECCCccccchHH
Confidence 344444444 678888999999999988
No 67
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=75.63 E-value=2.2 Score=43.44 Aligned_cols=47 Identities=15% Similarity=0.354 Sum_probs=29.1
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.|+||..++.. ...++..+ ..++.. ...+..++-||.+|+||||-+.
T Consensus 14 ~~~~d~f~~~~--~~~~~~~l-~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 14 PPTFDNFVAGE--NAELVARL-RELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred hhhhcccccCC--cHHHHHHH-HHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 48899988322 22333332 323321 1345678999999999999774
No 68
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=75.58 E-value=1 Score=45.91 Aligned_cols=17 Identities=41% Similarity=0.724 Sum_probs=14.3
Q ss_pred EEEEecccCCCCeeecC
Q psy2748 105 LLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm~ 121 (690)
-+..+|.||||||+|+.
T Consensus 25 H~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTVK 41 (229)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 45678999999999984
No 69
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=75.56 E-value=0.91 Score=41.46 Aligned_cols=18 Identities=39% Similarity=0.576 Sum_probs=12.8
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 467899999999999866
No 70
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=75.51 E-value=1.5 Score=41.70 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=19.5
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
+++.++.|.| ++..|+||||||+.+.
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 3444556766 7789999999999863
No 71
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=75.42 E-value=1.1 Score=45.06 Aligned_cols=19 Identities=53% Similarity=0.795 Sum_probs=16.8
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
+|+|+-.|+||||||.+|.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4789999999999999884
No 72
>PRK08181 transposase; Validated
Probab=75.41 E-value=2.5 Score=44.81 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=17.3
Q ss_pred ccCCeEEEEecccCCCCeeecCC
Q psy2748 100 HAKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyTm~G 122 (690)
.|.| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4444 88999999999998865
No 73
>PRK06835 DNA replication protein DnaC; Validated
Probab=74.89 E-value=1.8 Score=47.19 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=26.2
Q ss_pred HHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCC
Q psy2748 85 QVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 85 evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 122 (690)
.+++. +...++++-.+. ..|+-||++|+||||.+.+
T Consensus 167 ~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 167 KILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 34443 355777776555 5689999999999998754
No 74
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=74.85 E-value=1.7 Score=48.79 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=30.6
Q ss_pred ceEEEecEEeCCCCChHHHHHHhhHHHHHHHhcc-CCeEEEEecccCCCCeeecC
Q psy2748 68 EVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHA-KNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 68 ~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G-~N~~IfaYGqTGSGKTyTm~ 121 (690)
...|+||.-.... ++.-.|... . .+.+.-.+ || -||-||.+|+||||-|.
T Consensus 81 ~~~ytFdnFv~g~-~N~~A~aa~-~-~va~~~g~~~n-plfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVVGP-SNRLAYAAA-K-AVAENPGGAYN-PLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheeeCC-chHHHHHHH-H-HHHhccCCcCC-cEEEECCCCCCHHHHHH
Confidence 3468998877444 343444332 1 12221122 45 68999999999999885
No 75
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=73.65 E-value=1.8 Score=45.80 Aligned_cols=28 Identities=39% Similarity=0.657 Sum_probs=22.4
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.+..++..-.+.|+-.|.||||||.||.
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 3455666667889999999999999884
No 76
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=73.52 E-value=2.8 Score=51.14 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=29.5
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHHHHhc--cCCeEEEEecccCCCCeeecC
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIH--AKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~~~l~--G~N~~IfaYGqTGSGKTyTm~ 121 (690)
+..|.|=+.-..-++=++.++. ++..++. |-+.+||-||++|+|||.|+.
T Consensus 748 L~~DYVPD~LPhREeEIeeLas-fL~paIkgsgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 748 MQLDVVPKYLPCREKEIKEVHG-FLESGIKQSGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred cCcccCCCcCCChHHHHHHHHH-HHHHHHhcCCCCceEEEECCCCCCHHHHHH
Confidence 3344443333334444555543 3344443 455678999999999998873
No 77
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=73.17 E-value=0.26 Score=57.62 Aligned_cols=117 Identities=17% Similarity=0.197 Sum_probs=79.4
Q ss_pred CCEEEEEEecCCCCCCCCce--EEEec-----CcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHH
Q psy2748 23 DPLQVFCRIRPMDNSYDESC--ISVVS-----DTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLV 95 (690)
Q Consensus 23 ~~V~V~~RvRP~~~~e~~~~--i~v~~-----~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV 95 (690)
-.+.|+|+|+|......+.+ +...+ .+++....+ .........|.||.+|.....+..+|... ..++
T Consensus 305 ~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~ 378 (568)
T COG5059 305 CNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS-----SDSSREIEEIKFDLSEDRSEIEILVFREQ-SQLS 378 (568)
T ss_pred ccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc-----CcchHHHHHHHhhhhhhhhhhhhHHHHHH-Hhhh
Confidence 39999999999875433221 11100 111221111 01124566899999999999999999887 4577
Q ss_pred HHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccc
Q psy2748 96 ANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTF 151 (690)
Q Consensus 96 ~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~ 151 (690)
+..+.| +++|+++++|+++||.- ...+++.-++..+|+.+.......+.+
T Consensus 379 ~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ 428 (568)
T COG5059 379 QSSLSG----IFAYMQSLKKETETLKS--RIDLIMKSIISGTFERKKLLKEEGWKY 428 (568)
T ss_pred hhhhhh----HHHHHhhhhhhhhcccc--hhhhhhhhhhhhhhhhhhhhhhhHHHH
Confidence 777777 99999999999999953 446777777788888887765554443
No 78
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=72.99 E-value=21 Score=37.83 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q psy2748 422 ERLRMMKERQEEKT--KATKSKLSQKFQSKMQAQAETYE 458 (690)
Q Consensus 422 e~~~~L~~el~e~e--~~~k~~le~~~~~kl~~~~ek~e 458 (690)
-.++.|+.+|.|.+ ..+++.--..+...|..++|-|.
T Consensus 68 V~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWI 106 (305)
T PF15290_consen 68 VCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWI 106 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555554443 22222223344455555555553
No 79
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=72.45 E-value=2.8 Score=44.09 Aligned_cols=51 Identities=20% Similarity=0.128 Sum_probs=35.6
Q ss_pred eEEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCC
Q psy2748 69 VQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 69 ~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 122 (690)
+.|.|..+-.....+..+|... ..+++.+-.|.| |+-||+.|+||||-..+
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDL-ASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CCcccccccCCcchhHHHHHHH-HHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 3455555555666788888887 446666664444 56799999999998754
No 80
>PF12846 AAA_10: AAA-like domain
Probab=72.37 E-value=1.4 Score=46.05 Aligned_cols=19 Identities=47% Similarity=0.550 Sum_probs=16.4
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
|.-++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5668899999999999884
No 81
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=70.21 E-value=1.7 Score=38.73 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=15.6
Q ss_pred eEEEEecccCCCCeeecC
Q psy2748 104 GLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~ 121 (690)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999884
No 82
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=69.68 E-value=2.6 Score=42.31 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=20.9
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.|..++...+..++..|..||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 3445566666667779999999999883
No 83
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=69.45 E-value=2.4 Score=46.10 Aligned_cols=28 Identities=36% Similarity=0.442 Sum_probs=19.5
Q ss_pred HHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 93 PLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 93 plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.++..++.+. ..|+-.|.||||||++|.
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4555566654 455666999999997763
No 84
>PRK06921 hypothetical protein; Provisional
Probab=69.11 E-value=3.4 Score=43.68 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=22.3
Q ss_pred hHHHHHHHhc---cCCeEEEEecccCCCCeeecCC
Q psy2748 91 AHPLVANLIH---AKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 91 ~~plV~~~l~---G~N~~IfaYGqTGSGKTyTm~G 122 (690)
+...++++-. +....|+-||++|+||||.+..
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 3456665532 2345678899999999998854
No 85
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=69.08 E-value=2.9 Score=43.34 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=17.4
Q ss_pred hccCCeEEEEecccCCCCeeec
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm 120 (690)
++...+.++-+|+.|+|||+.+
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 3444667888999999999776
No 86
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=67.21 E-value=3.7 Score=45.35 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=28.6
Q ss_pred CCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 80 DVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 80 ~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..|+.+|+.+...+.. .....+|.-|.-|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 35699999998664432 44567799999999999977
No 87
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=65.38 E-value=3.2 Score=44.69 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=20.8
Q ss_pred HHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 92 HPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 92 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
..++..++.+ .+.|+-.|.||||||.+|
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3455556654 456779999999999887
No 88
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=63.96 E-value=4.4 Score=40.15 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=15.6
Q ss_pred eEEEEecccCCCCeeecCC
Q psy2748 104 GLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~G 122 (690)
-.|+-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 3488999999999998754
No 89
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=63.43 E-value=3.6 Score=40.96 Aligned_cols=27 Identities=37% Similarity=0.456 Sum_probs=19.6
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
|.+.+-.|.+.+++-||+.|+|||+.|
T Consensus 11 l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 11 LKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 444344566889999999999999866
No 90
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=62.90 E-value=2.7 Score=42.38 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=14.9
Q ss_pred EEEEecccCCCCeeecC
Q psy2748 105 LLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm~ 121 (690)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 57889999999999984
No 91
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=61.73 E-value=6.1 Score=43.98 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=41.9
Q ss_pred ceEEEecEEeCCCCChHHHHHHhhHHHHHHHhc----cCCeEEEEecccCCCCeee
Q psy2748 68 EVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIH----AKNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 68 ~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~----G~N~~IfaYGqTGSGKTyT 119 (690)
..++.|+.+.+...--..+.+.++..+..+++. -.--.|.-||+.|+|||+.
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll 164 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ 164 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH
Confidence 456889999888888888999999899999884 2233466799999999875
No 92
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=61.36 E-value=7.7 Score=41.31 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=15.3
Q ss_pred eEEEEecccCCCCeeecCC
Q psy2748 104 GLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~G 122 (690)
..|+-.|+||+|||+|+..
T Consensus 195 ~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3566679999999999853
No 93
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=61.31 E-value=6.1 Score=45.01 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=32.6
Q ss_pred ceEEEecEEeCCCCChHHHHHHhhHHHHHHH--hcc--CCeEEEEecccCCCCeeecCC
Q psy2748 68 EVQYVFKKIFNVDVGQKQVYSEVAHPLVANL--IHA--KNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 68 ~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~--l~G--~N~~IfaYGqTGSGKTyTm~G 122 (690)
...|+||.-... .+++..|..+ ..+.++. ..| +|. +|-||.+|+||||.+..
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~a-~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRIL-QEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeC-CcHHHHHHHH-HHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 346899987743 3455555443 4444332 223 454 67899999999998853
No 94
>PF13479 AAA_24: AAA domain
Probab=61.23 E-value=3.6 Score=41.77 Aligned_cols=20 Identities=40% Similarity=0.479 Sum_probs=16.8
Q ss_pred CeEEEEecccCCCCeeecCC
Q psy2748 103 NGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~G 122 (690)
+..++-||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45688999999999998754
No 95
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=61.07 E-value=5.9 Score=42.50 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=25.9
Q ss_pred EecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 72 VFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 72 ~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
+|+.+.+ |.++.+.+. .-+-.|....++-||++|+|||+++.
T Consensus 13 ~~~~~~g----~~~~~~~L~----~~~~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVERLS----RAVDSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHHHH----HHHhCCCCceEEEECCCCCCHHHHHH
Confidence 4666664 555544432 22223443457889999999999873
No 96
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=60.12 E-value=5.5 Score=37.94 Aligned_cols=19 Identities=32% Similarity=0.193 Sum_probs=14.8
Q ss_pred eEEEEecccCCCCeeecCC
Q psy2748 104 GLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~G 122 (690)
..++..|.||||||.++..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 25 RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred CcEEEECCCCCchhHHHHH
Confidence 3556788999999998743
No 97
>PHA00729 NTP-binding motif containing protein
Probab=59.65 E-value=6.9 Score=40.51 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=23.8
Q ss_pred hHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 91 AHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 91 ~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
+.-+++++..|--..|+-+|.+|+||||-..
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 4556777765555679999999999998764
No 98
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=59.54 E-value=8.3 Score=43.16 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=16.7
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4678899999999999983
No 99
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=59.40 E-value=4.1 Score=42.78 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=17.4
Q ss_pred hccCCeEEEEecccCCCCeeecC
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
+.-.++.++..|..|||||+||.
T Consensus 9 i~~~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 9 IRSTEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp HHS-SSEEEEEE-TTSSHHHHHH
T ss_pred HhCCCCCEEEEeCCCCCchHHHH
Confidence 33377888889999999999984
No 100
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=59.29 E-value=6.1 Score=43.08 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=19.6
Q ss_pred HHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 93 PLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 93 plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.++..++.+. +.|+-.|.||||||.+|.
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 3444455433 347789999999999883
No 101
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=58.84 E-value=6.2 Score=40.26 Aligned_cols=19 Identities=37% Similarity=0.716 Sum_probs=14.0
Q ss_pred CCeEEEEecccCCCCeeec
Q psy2748 102 KNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 102 ~N~~IfaYGqTGSGKTyTm 120 (690)
.+-.+++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5669999999999999765
No 102
>KOG1514|consensus
Probab=58.73 E-value=12 Score=44.60 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=38.7
Q ss_pred ccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHH
Q psy2748 100 HAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDIL 168 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~l 168 (690)
+|--+|++.-|+.|||||+|+.+ .++.|-...+..+-+.|.| ..+||+.+.+-.+.+
T Consensus 419 ~~~g~~mYIsGvPGtGKT~tV~~----------Vm~~Lq~~s~~~e~p~f~y--veINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 419 QGLGSCMYISGVPGTGKTATVLE----------VMKELQTSSAQKELPKFDY--VEINGLRLASPREIY 475 (767)
T ss_pred CCCceeEEEecCCCCCceehHHH----------HHHHHHHHHhhcCCCCccE--EEEcceeecCHHHHH
Confidence 46777999999999999999854 5555555555544444433 366777776654444
No 103
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=58.44 E-value=6.6 Score=41.75 Aligned_cols=44 Identities=25% Similarity=0.315 Sum_probs=27.0
Q ss_pred eCCCCChHHHHHHhhHHHHHHHhc--cCCeEEEEecccCCCCeeecC
Q psy2748 77 FNVDVGQKQVYSEVAHPLVANLIH--AKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 77 F~~~asQ~evF~~v~~plV~~~l~--G~N~~IfaYGqTGSGKTyTm~ 121 (690)
|.....|+++.+.+. .++..... +....++-||+.|+|||+...
T Consensus 3 ~~~~iG~~~~~~~l~-~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQ-LFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HHHHcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 444567788777653 33433322 222236679999999997663
No 104
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=57.87 E-value=4.3 Score=37.64 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=13.9
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
+|+..|..|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5789999999999864
No 105
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=57.83 E-value=3.6 Score=37.21 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=13.1
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999865
No 106
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=57.70 E-value=3.4 Score=39.84 Aligned_cols=22 Identities=36% Similarity=0.385 Sum_probs=12.9
Q ss_pred hccCCeEEEEecccCCCCeeec
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm 120 (690)
..|...+++-+|..|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 3566788999999999999875
No 107
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=57.29 E-value=4.5 Score=36.47 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=13.9
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999865
No 108
>PRK10536 hypothetical protein; Provisional
Probab=57.09 E-value=5.3 Score=42.22 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=31.2
Q ss_pred eEEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 69 VQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 69 ~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
..|.|..|-+-+..|..+...+ .+ +..++..|..|+||||..
T Consensus 50 ~~~~~~~i~p~n~~Q~~~l~al--------~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 50 DSRDTSPILARNEAQAHYLKAI--------ES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hhcCCccccCCCHHHHHHHHHH--------hc--CCeEEEECCCCCCHHHHH
Confidence 3577888888777776655522 22 359999999999999876
No 109
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=56.93 E-value=3.7 Score=41.10 Aligned_cols=17 Identities=47% Similarity=0.638 Sum_probs=12.9
Q ss_pred EEEEecccCCCCeeecC
Q psy2748 105 LLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm~ 121 (690)
-++.+|.||||||.+|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57899999999999874
No 110
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=56.85 E-value=5.6 Score=39.38 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=19.6
Q ss_pred HHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 92 HPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 92 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
..++..++.. ...+.-.|.||||||.+|
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 3445545543 346778899999999877
No 111
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=55.89 E-value=2.7 Score=46.26 Aligned_cols=51 Identities=24% Similarity=0.347 Sum_probs=30.1
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHH-Hhc--cC--CeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVAN-LIH--AK--NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~-~l~--G~--N~~IfaYGqTGSGKTyTm 120 (690)
.+.|+.+.|-+..-+++.+.+..|+... ++. |. ...|+-||++|+|||+.+
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 4566666665544455555554444322 111 11 234788999999999877
No 112
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=55.56 E-value=14 Score=38.34 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=28.3
Q ss_pred EeCCCCChHHHHHHhhHHHHHHHhcc--CCeEEEEecccCCCCeee
Q psy2748 76 IFNVDVGQKQVYSEVAHPLVANLIHA--KNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 76 VF~~~asQ~evF~~v~~plV~~~l~G--~N~~IfaYGqTGSGKTyT 119 (690)
-|++...|+++-+.. ..+++.+... .=.-++-||+.|.|||..
T Consensus 22 ~L~efiGQ~~l~~~l-~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNL-KILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp SCCCS-S-HHHHHHH-HHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred CHHHccCcHHHHhhh-HHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 356677899999875 5677766532 223578899999999753
No 113
>PRK09183 transposase/IS protein; Provisional
Probab=55.42 E-value=6.7 Score=41.29 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=16.2
Q ss_pred ccCCeEEEEecccCCCCeeecCC
Q psy2748 100 HAKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyTm~G 122 (690)
.|.| |+-||++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4544 55799999999998853
No 114
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=55.09 E-value=6.7 Score=42.91 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=18.2
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
++..++.+. +.|+..|.||||||.+|
T Consensus 152 ~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 152 FLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 444444433 34778899999999887
No 115
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=54.99 E-value=9.7 Score=40.63 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=24.1
Q ss_pred HhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 89 EVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 89 ~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
..+.||+ .++.--+..|.-||+|++|||.++
T Consensus 180 afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 180 AFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 3356666 356677889999999999999877
No 116
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=54.25 E-value=7.8 Score=38.25 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=16.9
Q ss_pred HHHhccCCeEEEEecccCCCCeee
Q psy2748 96 ANLIHAKNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 96 ~~~l~G~N~~IfaYGqTGSGKTyT 119 (690)
+.++.|.| ++..++||+|||.+
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHH
Confidence 44455877 56788999999987
No 117
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=53.74 E-value=6.4 Score=39.14 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=13.5
Q ss_pred EEEEecccCCCCeeecCC
Q psy2748 105 LLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm~G 122 (690)
..+..|+.|||||+|+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp -EEEE-STTSSHHHHHHH
T ss_pred CEEEECCCCCChHHHHHH
Confidence 567799999999988753
No 118
>KOG0989|consensus
Probab=53.36 E-value=10 Score=40.95 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=18.7
Q ss_pred HHHHHhcc-CCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHA-KNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G-~N~~IfaYGqTGSGKTyTm 120 (690)
++.+.+.+ .--..+-||+.|+|||.|.
T Consensus 47 ~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 47 VLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 33334444 3345678999999999997
No 119
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=53.18 E-value=9.3 Score=45.90 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=26.1
Q ss_pred HHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 85 QVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 85 evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.||.....-.-.-...+.|-+|+..|.+|||||.++
T Consensus 67 Hif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhhhcccccccccccccceeeccccccccccch
Confidence 456554332323334689999999999999999986
No 120
>PRK13764 ATPase; Provisional
Probab=52.94 E-value=7.1 Score=46.08 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.3
Q ss_pred cCCeEEEEecccCCCCeeecC
Q psy2748 101 AKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 101 G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.....|+..|.||||||+++.
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHH
Confidence 344558999999999999984
No 121
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=52.70 E-value=20 Score=43.39 Aligned_cols=34 Identities=29% Similarity=0.435 Sum_probs=26.6
Q ss_pred HHHh-hHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 87 YSEV-AHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 87 F~~v-~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
|... +..+++.+-+|.+-.|++. .||+|||||-+
T Consensus 169 yQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAi 203 (875)
T COG4096 169 YQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAI 203 (875)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHH
Confidence 4433 4667888999999977777 69999999954
No 122
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=52.24 E-value=9.5 Score=40.71 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=17.3
Q ss_pred cCCeEEEEecccCCCCeeec
Q psy2748 101 AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 101 G~N~~IfaYGqTGSGKTyTm 120 (690)
.-+.+|.-||.-|||||+-|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45788999999999999855
No 123
>PTZ00424 helicase 45; Provisional
Probab=51.81 E-value=7.7 Score=42.82 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=19.2
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..+++|.|.. ..++||||||.+.
T Consensus 58 ai~~i~~~~d~i--i~apTGsGKT~~~ 82 (401)
T PTZ00424 58 GIKPILDGYDTI--GQAQSGTGKTATF 82 (401)
T ss_pred HHHHHhCCCCEE--EECCCCChHHHHH
Confidence 455567899864 5689999999765
No 124
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=51.69 E-value=6.2 Score=37.21 Aligned_cols=49 Identities=24% Similarity=0.226 Sum_probs=27.5
Q ss_pred EEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHH
Q psy2748 105 LLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVD 166 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~ 166 (690)
.+--.|.||+||||+- -...+.||..- ..+.++-......-|--.+.++
T Consensus 55 VlSfHG~tGtGKn~v~----------~liA~~ly~~G---~~S~~V~~f~~~~hFP~~~~v~ 103 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVS----------RLIAEHLYKSG---MKSPFVHQFIATHHFPHNSNVD 103 (127)
T ss_pred EEEeecCCCCcHHHHH----------HHHHHHHHhcc---cCCCceeeecccccCCCchHHH
Confidence 3456799999999965 23566777643 2234444444444443333333
No 125
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=51.34 E-value=4.7 Score=36.26 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHh
Q psy2748 106 LLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSI 141 (690)
Q Consensus 106 IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i 141 (690)
|+-||.+|.|||+.+. ..+.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~~----------~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK----------ELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHH----------HHHHHHHHHh
Confidence 5789999999998773 3555565555
No 126
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=51.29 E-value=6.6 Score=39.30 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=14.6
Q ss_pred CCeEEEEecccCCCCeeec
Q psy2748 102 KNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 102 ~N~~IfaYGqTGSGKTyTm 120 (690)
.-.++|..|+.|||||+.+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp S-EEEEEES-TTSTTHHHH
T ss_pred CCEEEEEeCCCCCCHHHHH
Confidence 4568899999999998876
No 127
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=51.28 E-value=8.6 Score=43.62 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=18.4
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..+++|.| ++..++||||||.+.
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHHH
Confidence 444678888 667889999999664
No 128
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=50.98 E-value=4.3 Score=45.31 Aligned_cols=50 Identities=26% Similarity=0.371 Sum_probs=28.8
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHHH-Hhc--c--CCeEEEEecccCCCCeeec
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVAN-LIH--A--KNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~~-~l~--G--~N~~IfaYGqTGSGKTyTm 120 (690)
++|+.|-|-+..-+++.+.+..|+... ++. | ....|+-||++|+|||+..
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 455555555444455555554554432 222 1 1334778999999999765
No 129
>PRK06547 hypothetical protein; Provisional
Probab=50.95 E-value=12 Score=36.88 Aligned_cols=27 Identities=33% Similarity=0.300 Sum_probs=19.6
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
++..+..+.--.|..+|.+|||||+.-
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 444455556667777899999999765
No 130
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=49.98 E-value=9.4 Score=43.50 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=19.4
Q ss_pred cCCCCceeEEEEEeCCCCCCHHHHhhHHHHHh
Q psy2748 323 YFTGDGDVRMIVCVNPRVEDYDENLAVMKFAE 354 (690)
Q Consensus 323 sLgGnskt~mIvcVsP~~~~~~ETl~TLrFA~ 354 (690)
.|.-...+.+|+|+|..... +..|.+|-
T Consensus 319 ~f~iP~Nl~IIgTMNt~Drs----~~~lD~Al 346 (459)
T PRK11331 319 RFYVPENVYIIGLMNTADRS----LAVVDYAL 346 (459)
T ss_pred cccCCCCeEEEEecCccccc----hhhccHHH
Confidence 35556899999999996653 44455553
No 131
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=49.82 E-value=6.6 Score=38.68 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=14.7
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 56889999999999954
No 132
>PRK13342 recombination factor protein RarA; Reviewed
Probab=49.46 E-value=8.1 Score=43.37 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=25.0
Q ss_pred CCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 80 DVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 80 ~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
-..|+++... ...+...+-.+.-..++-||+.|+|||+...
T Consensus 14 ~vGq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 14 VVGQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred hcCcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 3456666544 1233333334554566669999999997663
No 133
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=49.29 E-value=9.5 Score=40.75 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=17.0
Q ss_pred ccC-CeEEEEecccCCCCeeecC
Q psy2748 100 HAK-NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 100 ~G~-N~~IfaYGqTGSGKTyTm~ 121 (690)
.|. ...++-||+.|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 454 4577779999999998873
No 134
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=48.90 E-value=6.5 Score=43.23 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=18.6
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
++..++.+ .+.|+..|.||||||.+|.
T Consensus 154 ~l~~~v~~-~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 154 FLHACVVG-RLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHc-CCeEEEECCCCccHHHHHH
Confidence 44444432 3447788999999999884
No 135
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=48.86 E-value=10 Score=41.61 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=20.1
Q ss_pred HHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 93 PLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 93 plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.++..++.+. +-|+-.|-||||||.++
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 3444455555 67888999999999877
No 136
>PHA02244 ATPase-like protein
Probab=48.62 E-value=15 Score=40.84 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=20.2
Q ss_pred HHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 86 VYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 86 vF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.|......+..-+-.|.+.+| +|+||+|||+..
T Consensus 104 ~~~~~~~ri~r~l~~~~PVLL--~GppGtGKTtLA 136 (383)
T PHA02244 104 TFHYETADIAKIVNANIPVFL--KGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHHHHHHHHhcCCCEEE--ECCCCCCHHHHH
Confidence 343333334444445666544 899999999765
No 137
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=48.00 E-value=10 Score=42.64 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=19.6
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..+++|.| ++..++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455678887 778899999999764
No 138
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=47.97 E-value=14 Score=44.41 Aligned_cols=30 Identities=33% Similarity=0.380 Sum_probs=20.5
Q ss_pred HHHHHHHhc-----cCCeEEEEecccCCCCeeecCC
Q psy2748 92 HPLVANLIH-----AKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 92 ~plV~~~l~-----G~N~~IfaYGqTGSGKTyTm~G 122 (690)
..+++.+.. |.+..|+.. .||||||+||..
T Consensus 248 ~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 248 KKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 456666665 344555444 899999999964
No 139
>KOG0331|consensus
Probab=47.00 E-value=13 Score=43.01 Aligned_cols=26 Identities=19% Similarity=0.246 Sum_probs=18.6
Q ss_pred CCCCchhhhcccccCCCC-ceeEEEEE
Q psy2748 310 PFRESKLTHLFKSYFTGD-GDVRMIVC 335 (690)
Q Consensus 310 PYRdSKLT~LLkdsLgGn-skt~mIvc 335 (690)
.=+.++|..||+++.++. +|+++.|.
T Consensus 323 ~~K~~~l~~lL~~~~~~~~~KvIIFc~ 349 (519)
T KOG0331|consen 323 TAKLRKLGKLLEDISSDSEGKVIIFCE 349 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEec
Confidence 346789999999999554 56655543
No 140
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=46.92 E-value=7.6 Score=34.90 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=13.0
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
|+-.|.+|||||...
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999876
No 141
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=46.83 E-value=6.8 Score=36.40 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=13.1
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999765
No 142
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=46.75 E-value=11 Score=42.08 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=24.8
Q ss_pred hHHHHHHhhHHHHHHHhcc----CCeEEEEecccCCCCeeecC
Q psy2748 83 QKQVYSEVAHPLVANLIHA----KNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 83 Q~evF~~v~~plV~~~l~G----~N~~IfaYGqTGSGKTyTm~ 121 (690)
+...|.....-+...++.- ..+.|.-.|+||.|||.|+-
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 179 DLRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred hhhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHH
Confidence 3344444433343333333 36778889999999999983
No 143
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=46.56 E-value=8.1 Score=43.01 Aligned_cols=19 Identities=42% Similarity=0.580 Sum_probs=16.5
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
...++-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4677889999999999984
No 144
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=46.41 E-value=12 Score=42.62 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=19.5
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.|..+++|.| +++-.+||||||.+.
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3455678988 677789999999874
No 145
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=45.75 E-value=6.4 Score=44.20 Aligned_cols=52 Identities=25% Similarity=0.417 Sum_probs=35.0
Q ss_pred eEEEecEEeCCCCChHHHHHHhhHHHHH-HHhc--c--CCeEEEEecccCCCCeeec
Q psy2748 69 VQYVFKKIFNVDVGQKQVYSEVAHPLVA-NLIH--A--KNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 69 ~~f~Fd~VF~~~asQ~evF~~v~~plV~-~~l~--G--~N~~IfaYGqTGSGKTyTm 120 (690)
...+|+.|-|.+..-+++-+.+..|+.. .++. | ....|+-||+.|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3467788887766666666666666653 2333 2 2345778999999999876
No 146
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=45.35 E-value=13 Score=40.20 Aligned_cols=44 Identities=25% Similarity=0.345 Sum_probs=26.5
Q ss_pred eCCCCChHHHHHHhhHHHHHHHhc-c-CCeEEEEecccCCCCeeecC
Q psy2748 77 FNVDVGQKQVYSEVAHPLVANLIH-A-KNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 77 F~~~asQ~evF~~v~~plV~~~l~-G-~N~~IfaYGqTGSGKTyTm~ 121 (690)
|.....|+++-+.+. -++..... | .-..++-||+.|+|||+...
T Consensus 24 ~~~~vG~~~~~~~l~-~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 24 LDEFIGQEKVKENLK-IFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred HHHhcCcHHHHHHHH-HHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 344456666666553 23333321 2 22356779999999998874
No 147
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=45.32 E-value=11 Score=42.13 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=18.2
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..++.|.|. ++-++||||||.+.
T Consensus 39 ip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 39 LPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHhCCCcE--EEECCCCchHHHHH
Confidence 3456889884 55679999999864
No 148
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=44.29 E-value=8.8 Score=42.35 Aligned_cols=43 Identities=30% Similarity=0.504 Sum_probs=28.9
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.|.|+.|-| |+++=. -|+-.+++-.-+-|+-+|.+|||||+.+
T Consensus 13 ~~pf~~ivG----q~~~k~----al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 13 VFPFTAIVG----QEEMKL----ALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCHHHHhC----hHHHHH----HHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 588887775 444333 3444444434456779999999999876
No 149
>KOG2543|consensus
Probab=44.10 E-value=8.7 Score=42.66 Aligned_cols=17 Identities=41% Similarity=0.880 Sum_probs=14.8
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
+.|+-||.+||||||++
T Consensus 31 S~~~iyG~sgTGKT~~~ 47 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV 47 (438)
T ss_pred eeEEEeccCCCchhHHH
Confidence 34699999999999987
No 150
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=43.77 E-value=14 Score=43.05 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=22.0
Q ss_pred HHHHHHHhccC--CeEEEEecccCCCCeeec
Q psy2748 92 HPLVANLIHAK--NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 92 ~plV~~~l~G~--N~~IfaYGqTGSGKTyTm 120 (690)
+..++..+.|. ...|+-+|++|+|||.|+
T Consensus 32 ~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 32 RSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 44555555554 357889999999999998
No 151
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=43.42 E-value=20 Score=43.19 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=26.5
Q ss_pred HHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 85 QVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 85 evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.||.-...-...-+-.|.|-+|+.-|.+|||||.|.
T Consensus 74 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 74 HVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 466655333333334689999999999999999987
No 152
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=43.34 E-value=7.2 Score=44.35 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=26.7
Q ss_pred EecEEeCCCCChHHHHHHhhHHHHHHH-hc--cC--CeEEEEecccCCCCeeec
Q psy2748 72 VFKKIFNVDVGQKQVYSEVAHPLVANL-IH--AK--NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 72 ~Fd~VF~~~asQ~evF~~v~~plV~~~-l~--G~--N~~IfaYGqTGSGKTyTm 120 (690)
+|+.|.|-+..-+++.+.+..|+...- +. |. ...++-||++|+|||.+.
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 445554444444555555545544321 11 11 123566899999998776
No 153
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=43.06 E-value=24 Score=40.13 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=16.2
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
-..|+-+|.+|+|||.|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4578889999999999983
No 154
>KOG0926|consensus
Probab=42.78 E-value=15 Score=44.32 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=16.3
Q ss_pred CCeEEEEecccCCCCeeec
Q psy2748 102 KNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 102 ~N~~IfaYGqTGSGKTyTm 120 (690)
-|-.++.+|+||||||.-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 3667888999999999887
No 155
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=42.09 E-value=8.8 Score=41.52 Aligned_cols=15 Identities=47% Similarity=0.720 Sum_probs=12.7
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
...||+|||||++-+
T Consensus 90 ~~VYGPTG~GKSqLl 104 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLL 104 (369)
T ss_pred EEEECCCCCCHHHHH
Confidence 467999999998866
No 156
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=41.74 E-value=10 Score=40.14 Aligned_cols=16 Identities=44% Similarity=0.671 Sum_probs=13.5
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.|+-||++|+|||++-
T Consensus 153 nVLFyGppGTGKTm~A 168 (368)
T COG1223 153 NVLFYGPPGTGKTMMA 168 (368)
T ss_pred eeEEECCCCccHHHHH
Confidence 4678999999998764
No 157
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=41.59 E-value=17 Score=44.26 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=25.0
Q ss_pred HHHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHH
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNS 140 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~ 140 (690)
+..+.+|+|++|.| +||||||-+- ++| +++.|+..
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeAA--------fLp-il~~l~~~ 65 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEAA--------FLP-VINELLSL 65 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHHH--------HHH-HHHHHHhc
Confidence 44457999999987 8999998653 455 55555554
No 158
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=41.47 E-value=16 Score=46.34 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=19.8
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeecCC
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm~G 122 (690)
+++.+.+|....|+. ..||||||+||.+
T Consensus 425 i~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 425 VEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHhccCCeEEE-eCCCCCHHHHHHH
Confidence 344445676655544 8999999999865
No 159
>KOG2373|consensus
Probab=41.43 E-value=23 Score=38.95 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=24.2
Q ss_pred CCCceeEEEEEeCCCCCCHHHHhhHHHHHhhhhcee
Q psy2748 325 TGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQ 360 (690)
Q Consensus 325 gGnskt~mIvcVsP~~~~~~ETl~TLrFA~rak~I~ 360 (690)
..|+.+.|+ |.|..++-+.-|.|-.|.--|+.-+
T Consensus 413 ~nn~HvTlV--vHPRKed~d~El~t~s~fGsAkatQ 446 (514)
T KOG2373|consen 413 QNNIHVTLV--VHPRKEDGDTELDTQSFFGSAKATQ 446 (514)
T ss_pred ccceeEEEE--ecccccCCCceeeehhhcccccccc
Confidence 346778887 4688888888888888866665443
No 160
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=41.21 E-value=16 Score=44.33 Aligned_cols=40 Identities=33% Similarity=0.457 Sum_probs=24.2
Q ss_pred CChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 81 VGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 81 asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
..|+.+-... ..+..-+-.+.-..++-||++|+|||++..
T Consensus 31 vGQe~ii~~~-~~L~~~i~~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 31 VGQDHILGEG-RLLRRAIKADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cCcHHHhhhh-HHHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 3555555431 222222334545577889999999998874
No 161
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=41.15 E-value=19 Score=38.17 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=16.1
Q ss_pred ccCCeEEEEecccCCCCeeec
Q psy2748 100 HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyTm 120 (690)
.|...-++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999999776
No 162
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=41.10 E-value=21 Score=37.48 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=17.1
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
++..+..|.+. +-+|.+|+|||...
T Consensus 14 ~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 14 ALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 34445556554 45899999998755
No 163
>KOG0335|consensus
Probab=41.06 E-value=11 Score=42.89 Aligned_cols=17 Identities=41% Similarity=0.432 Sum_probs=14.9
Q ss_pred EEEecccCCCCeeecCC
Q psy2748 106 LLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 106 IfaYGqTGSGKTyTm~G 122 (690)
+++++|||||||+...+
T Consensus 114 l~acAqTGsGKT~aFLi 130 (482)
T KOG0335|consen 114 LMACAQTGSGKTAAFLI 130 (482)
T ss_pred eEEEccCCCcchHHHHH
Confidence 59999999999998854
No 164
>PLN03025 replication factor C subunit; Provisional
Probab=40.97 E-value=20 Score=38.75 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=14.5
Q ss_pred EEEEecccCCCCeeecCC
Q psy2748 105 LLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm~G 122 (690)
-++-||+.|+|||++...
T Consensus 36 ~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 36 NLILSGPPGTGKTTSILA 53 (319)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 355699999999998753
No 165
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=40.82 E-value=21 Score=38.84 Aligned_cols=19 Identities=42% Similarity=0.585 Sum_probs=15.6
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
...|.-.|++|+|||.|+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIG 132 (318)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3467778999999999983
No 166
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=40.53 E-value=29 Score=38.48 Aligned_cols=45 Identities=18% Similarity=0.417 Sum_probs=27.1
Q ss_pred eEEEe-c-EEeCCCCChHHHHHHhhHHHHHHHhcc---CCeEEEEecccCCCCee
Q psy2748 69 VQYVF-K-KIFNVDVGQKQVYSEVAHPLVANLIHA---KNGLLLTYGVTGSGKTY 118 (690)
Q Consensus 69 ~~f~F-d-~VF~~~asQ~evF~~v~~plV~~~l~G---~N~~IfaYGqTGSGKTy 118 (690)
+.|.| + .|||. ++..+.++.-+ .....| .+-.|.-.|+.|||||.
T Consensus 44 ~~y~~F~~~~~G~----~~~i~~lv~~l-~~~a~g~~~~r~il~L~GPPGsGKSt 93 (361)
T smart00763 44 KRYRFFDHDFFGM----EEAIERFVNYF-KSAAQGLEERKQILYLLGPVGGGKSS 93 (361)
T ss_pred eeccccchhccCc----HHHHHHHHHHH-HHHHhcCCCCCcEEEEECCCCCCHHH
Confidence 34543 4 67764 44444444322 223333 56788999999999974
No 167
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=40.23 E-value=27 Score=35.76 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=23.8
Q ss_pred HHHHHHhhHHHHHHHhc-cCCeEEEEecccCCCCeeec
Q psy2748 84 KQVYSEVAHPLVANLIH-AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 84 ~evF~~v~~plV~~~l~-G~N~~IfaYGqTGSGKTyTm 120 (690)
..+|..++.-|..-+-. +..-.|.-.|.+|||||+.+
T Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 13 EAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 34566665544433333 55556777799999999765
No 168
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.20 E-value=17 Score=41.44 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=18.9
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.|..++.|.++ +...+||||||.+.
T Consensus 19 ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 45567789874 55679999999764
No 169
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=40.11 E-value=11 Score=39.45 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.4
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
.-++-||++|+|||++.
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 44677999999999876
No 170
>KOG0354|consensus
Probab=40.11 E-value=20 Score=43.18 Aligned_cols=25 Identities=40% Similarity=0.582 Sum_probs=20.1
Q ss_pred HHHHHHHhccCCeEEEEecccCCCCeee
Q psy2748 92 HPLVANLIHAKNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 92 ~plV~~~l~G~N~~IfaYGqTGSGKTyT 119 (690)
..+++.+| |.|..|.+ +||+|||+.
T Consensus 68 ~eivq~AL-gkNtii~l--PTG~GKTfI 92 (746)
T KOG0354|consen 68 EELVQPAL-GKNTIIAL--PTGSGKTFI 92 (746)
T ss_pred HHHhHHhh-cCCeEEEe--ecCCCccch
Confidence 44778889 99987654 899999985
No 171
>KOG0727|consensus
Probab=39.94 E-value=25 Score=37.09 Aligned_cols=73 Identities=23% Similarity=0.291 Sum_probs=46.4
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHHHHhc---cC--CeEEEEecccCCCCeeecC--------------CCC---CCCC
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIH---AK--NGLLLTYGVTGSGKTYTMN--------------GTN---SDGG 128 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~~~l~---G~--N~~IfaYGqTGSGKTyTm~--------------G~~---~~~G 128 (690)
-++..|=|-+..-++|-+.+-.||...-+- |. ---++.||+.|+|||-..- |+. .--|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 445666677777778888887787765442 32 2347889999999974321 211 0135
Q ss_pred hHHHHHHHHHHHhcc
Q psy2748 129 IMMRCIDVLFNSIGR 143 (690)
Q Consensus 129 IiPR~l~~LF~~i~~ 143 (690)
-=||.+.++|....+
T Consensus 232 egprmvrdvfrlake 246 (408)
T KOG0727|consen 232 EGPRMVRDVFRLAKE 246 (408)
T ss_pred cCcHHHHHHHHHHhc
Confidence 557888888876544
No 172
>PRK04195 replication factor C large subunit; Provisional
Probab=39.71 E-value=23 Score=40.63 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=21.2
Q ss_pred HHHHHHHhccC-CeEEEEecccCCCCeeec
Q psy2748 92 HPLVANLIHAK-NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 92 ~plV~~~l~G~-N~~IfaYGqTGSGKTyTm 120 (690)
...++...+|. .-.++-||+.|+|||++.
T Consensus 27 ~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 27 REWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 33455555664 456888999999999877
No 173
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=39.63 E-value=16 Score=38.73 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=18.5
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+++.++.. +--++-.|++|+|||-++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 44444433 556788999999998766
No 174
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.51 E-value=13 Score=40.57 Aligned_cols=17 Identities=47% Similarity=0.591 Sum_probs=13.7
Q ss_pred CeEEEEecccCCCCeee
Q psy2748 103 NGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyT 119 (690)
.+-|+-.|+||||||+-
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 34678899999999864
No 175
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=38.80 E-value=9.8 Score=39.91 Aligned_cols=47 Identities=11% Similarity=0.341 Sum_probs=33.5
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeE-EEEecccCCCCeeecCC
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGL-LLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~-IfaYGqTGSGKTyTm~G 122 (690)
..++...|-+...+.+.+.+ ..|+.|..+. ++-||..|+|||.++-+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVka 71 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVKA 71 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHHH
Confidence 46777777777666676666 4577777332 44599999999988743
No 176
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=38.60 E-value=27 Score=42.01 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=25.2
Q ss_pred HHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 85 QVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 85 evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.||...-.-.-.-+-.|.|-+|+.-|.+|||||.|.
T Consensus 70 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 70 HVFAIADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 355544222222233689999999999999999987
No 177
>KOG1029|consensus
Probab=38.56 E-value=1.4e+02 Score=36.11 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=12.6
Q ss_pred CHHHHhhHHHHHhhhhce
Q psy2748 342 DYDENLAVMKFAEMSQEV 359 (690)
Q Consensus 342 ~~~ETl~TLrFA~rak~I 359 (690)
..+|-+-.|.+.++|+.=
T Consensus 247 ~~dEfilam~liema~sG 264 (1118)
T KOG1029|consen 247 SADEFILAMHLIEMAKSG 264 (1118)
T ss_pred cHHHHHHHHHHHHHHhcC
Confidence 467777777777777654
No 178
>PRK04328 hypothetical protein; Provisional
Probab=38.53 E-value=21 Score=37.24 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=22.0
Q ss_pred HHHHHHHhcc---CCeEEEEecccCCCCee
Q psy2748 92 HPLVANLIHA---KNGLLLTYGVTGSGKTY 118 (690)
Q Consensus 92 ~plV~~~l~G---~N~~IfaYGqTGSGKTy 118 (690)
-+-+++++.| ...+++-+|.+|||||.
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 3457888877 58889999999999964
No 179
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=38.52 E-value=28 Score=39.26 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=16.0
Q ss_pred eEEEEecccCCCCeeecC
Q psy2748 104 GLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~ 121 (690)
..|+-.|++|+|||.|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 578899999999999984
No 180
>PF05729 NACHT: NACHT domain
Probab=38.47 E-value=14 Score=34.73 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=14.1
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.|+-+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 5788999999999876
No 181
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=38.30 E-value=32 Score=41.70 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=29.4
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHH-HHhccC----CeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVA-NLIHAK----NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~-~~l~G~----N~~IfaYGqTGSGKTyTm 120 (690)
.++|+.|-|.+..-+.+.+.+..|+-. .++..+ ...|+-||++|+|||+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 467777765554444444444433321 122211 235788999999999765
No 182
>KOG0953|consensus
Probab=38.29 E-value=21 Score=41.41 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=30.6
Q ss_pred eEEEEecccCCCCeeecC---CCCC---CCChHHHHHHHHHHHhccc
Q psy2748 104 GLLLTYGVTGSGKTYTMN---GTNS---DGGIMMRCIDVLFNSIGRY 144 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~---G~~~---~~GIiPR~l~~LF~~i~~~ 144 (690)
-.||..|+|+|||||--. ++.. -.|=+-.....+|+.++..
T Consensus 192 kIi~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred eEEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhc
Confidence 358999999999999763 2222 2577777888899888763
No 183
>PRK10865 protein disaggregation chaperone; Provisional
Probab=38.23 E-value=19 Score=44.52 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=26.8
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHHHHhccCC------eEEEEecccCCCCeeec
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKN------GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N------~~IfaYGqTGSGKTyTm 120 (690)
.-+.+|+|. ...-+.+..-+ ..+..|.. +.++-+|++|+|||++.
T Consensus 565 ~l~~~viGQ----~~ai~~l~~~i-~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 565 ELHHRVIGQ----NEAVEAVSNAI-RRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HhCCeEeCC----HHHHHHHHHHH-HHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 446677764 44444443322 22333322 57778899999999965
No 184
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=38.20 E-value=28 Score=41.85 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=25.5
Q ss_pred HHHHHhhHHHHHHH-hccCCeEEEEecccCCCCeeec
Q psy2748 85 QVYSEVAHPLVANL-IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 85 evF~~v~~plV~~~-l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.||.-.-. ....+ -.|.|-+|+.-|.+|||||.|.
T Consensus 68 HifaiA~~-Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYALADN-AYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHHHHHH-HHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 35654422 23333 3689999999999999999987
No 185
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=38.17 E-value=17 Score=43.27 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=19.1
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..++.|.+ |+..++||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 3455677877 677889999999864
No 186
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=38.15 E-value=12 Score=38.52 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=16.8
Q ss_pred CeEEEEecccCCCCeeecCC
Q psy2748 103 NGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~G 122 (690)
...++-||..|+|||+..-.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 35699999999999997754
No 187
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=38.11 E-value=26 Score=42.14 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=26.5
Q ss_pred HHHHHhhHHHHHHHh-ccCCeEEEEecccCCCCeeec
Q psy2748 85 QVYSEVAHPLVANLI-HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 85 evF~~v~~plV~~~l-~G~N~~IfaYGqTGSGKTyTm 120 (690)
.||.-. .....+++ .|.|-+|+.-|.+|||||.+.
T Consensus 68 HifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 68 HVFAIA-DRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 456543 44444444 589999999999999999987
No 188
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=37.83 E-value=13 Score=36.04 Aligned_cols=18 Identities=44% Similarity=0.767 Sum_probs=15.3
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
+++.+-||.+|+|||..|
T Consensus 19 ~g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp SEEEEEEESTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467788999999999876
No 189
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=37.75 E-value=28 Score=41.80 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=25.6
Q ss_pred HHHHHhhHHHHHHH-hccCCeEEEEecccCCCCeeec
Q psy2748 85 QVYSEVAHPLVANL-IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 85 evF~~v~~plV~~~-l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.||... ......+ -.|.|-+|+.-|.+|||||.|.
T Consensus 68 HifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 68 HIFAIS-DNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 355543 3333333 3689999999999999999987
No 190
>PHA02653 RNA helicase NPH-II; Provisional
Probab=37.74 E-value=26 Score=42.08 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=17.7
Q ss_pred HHHHHhccCCeEEEEecccCCCCeee
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyT 119 (690)
++..+++|.+ ++..|+||||||..
T Consensus 172 il~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 172 IFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHhCCC--EEEECCCCCCchhH
Confidence 4455566765 57899999999953
No 191
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=37.29 E-value=12 Score=34.65 Aligned_cols=16 Identities=50% Similarity=0.696 Sum_probs=13.4
Q ss_pred EEEecccCCCCeeecC
Q psy2748 106 LLTYGVTGSGKTYTMN 121 (690)
Q Consensus 106 IfaYGqTGSGKTyTm~ 121 (690)
++-||.+|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4679999999998764
No 192
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=37.21 E-value=27 Score=42.13 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=25.5
Q ss_pred HHHHHhhHHHHHHH-hccCCeEEEEecccCCCCeeec
Q psy2748 85 QVYSEVAHPLVANL-IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 85 evF~~v~~plV~~~-l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.||... .....++ -.|.|-||+.-|.+|||||.|.
T Consensus 76 Hiy~iA-~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 76 HIFAIA-DVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 355543 3333333 3688999999999999999987
No 193
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=37.19 E-value=32 Score=41.40 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=26.3
Q ss_pred HHHHHhhHHHHHHHh-ccCCeEEEEecccCCCCeeec
Q psy2748 85 QVYSEVAHPLVANLI-HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 85 evF~~v~~plV~~~l-~G~N~~IfaYGqTGSGKTyTm 120 (690)
.||... .....+++ .|.|-+|+.-|.+|||||.|.
T Consensus 74 HifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYAIA-DTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 466554 33344444 589999999999999999987
No 194
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=37.15 E-value=3e+02 Score=30.00 Aligned_cols=34 Identities=9% Similarity=0.082 Sum_probs=18.2
Q ss_pred ceeEEEEEeCCCCCC-HHHHhh----HHHHHhhhhceee
Q psy2748 328 GDVRMIVCVNPRVED-YDENLA----VMKFAEMSQEVQI 361 (690)
Q Consensus 328 skt~mIvcVsP~~~~-~~ETl~----TLrFA~rak~I~~ 361 (690)
.+++.|..--|...+ ++.... ++.+++.+.+++.
T Consensus 214 ~~~l~~~~~lp~~~~~~~~~~~l~~~v~~l~D~~~~~~l 252 (321)
T PF07946_consen 214 KKRLIFSFRLPSSSDDMEALEPLLKLVFYLIDKLARFKL 252 (321)
T ss_pred CcEEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhheeee
Confidence 455555555555555 655544 4455666654443
No 195
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=37.15 E-value=22 Score=38.52 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.7
Q ss_pred hccCCeEEEEecccCCCCeeecC
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
-...+.-++-||..|||||.+|.
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHH
Confidence 35667889999999999999985
No 196
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=37.14 E-value=17 Score=41.42 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=19.4
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..+++|.|..+ ..+||||||.+.
T Consensus 117 ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 117 VLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 4566789998665 559999999765
No 197
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=37.08 E-value=31 Score=41.52 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=26.1
Q ss_pred HHHHHhhHHHHHHHh-ccCCeEEEEecccCCCCeeec
Q psy2748 85 QVYSEVAHPLVANLI-HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 85 evF~~v~~plV~~~l-~G~N~~IfaYGqTGSGKTyTm 120 (690)
.||... .....+++ .|.|-+|+.-|.+|||||.|.
T Consensus 69 HifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 69 HLFAIA-NLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CHHHHH-HHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 356554 33333333 689999999999999999987
No 198
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=36.90 E-value=26 Score=42.50 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=25.4
Q ss_pred HHHHhhHHHHHHH-hccCCeEEEEecccCCCCeeec
Q psy2748 86 VYSEVAHPLVANL-IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 86 vF~~v~~plV~~~-l~G~N~~IfaYGqTGSGKTyTm 120 (690)
||.-. ......+ -.|.|-+|+.-|.+|||||.|.
T Consensus 74 ifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 74 VFAIA-DKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred HHHHH-HHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 55543 3333333 3689999999999999999987
No 199
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=36.58 E-value=19 Score=35.96 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=18.6
Q ss_pred HHHhccC---CeEEEEecccCCCCeeec
Q psy2748 96 ANLIHAK---NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 96 ~~~l~G~---N~~IfaYGqTGSGKTyTm 120 (690)
|.++.|- ...+.-||.+|||||.-.
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3455443 678899999999998654
No 200
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=36.43 E-value=14 Score=34.80 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=13.0
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
+|+-.|..|||||+.-
T Consensus 1 li~l~G~~GsGKST~a 16 (150)
T cd02021 1 IIVVMGVSGSGKSTVG 16 (150)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 3678899999998754
No 201
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=35.89 E-value=18 Score=40.51 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=28.9
Q ss_pred CChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeee
Q psy2748 81 VGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 81 asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyT 119 (690)
..|+.+... ..+|-.-+-.|.-...+-||+.|+|||.-
T Consensus 27 vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 27 VGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred cChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 467888766 35565656678888889999999999853
No 202
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=35.84 E-value=15 Score=30.33 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=12.7
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
..+-+|.+|||||..|
T Consensus 25 ~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLL 40 (62)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567899999998655
No 203
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=35.59 E-value=31 Score=41.62 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=26.0
Q ss_pred HHHHHhhHHHHHHHh-ccCCeEEEEecccCCCCeeec
Q psy2748 85 QVYSEVAHPLVANLI-HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 85 evF~~v~~plV~~~l-~G~N~~IfaYGqTGSGKTyTm 120 (690)
.||.-. .....+++ .|.|-+|+.-|.+|||||.+.
T Consensus 73 HiyaiA-~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 73 HIFAIA-DNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CHHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 466644 33333333 699999999999999999987
No 204
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.48 E-value=15 Score=41.65 Aligned_cols=18 Identities=44% Similarity=0.647 Sum_probs=15.0
Q ss_pred eEEEEecccCCCCeeecC
Q psy2748 104 GLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~ 121 (690)
..++-.|+||+|||+|+.
T Consensus 222 ~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLA 239 (424)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 366777999999999984
No 205
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=35.38 E-value=20 Score=39.35 Aligned_cols=29 Identities=34% Similarity=0.437 Sum_probs=22.1
Q ss_pred hHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 91 AHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 91 ~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
...++..++.+. +.|+-.|.||||||.+|
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 345666666654 78889999999998766
No 206
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=35.36 E-value=22 Score=36.11 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=23.1
Q ss_pred HHHHHHHhcc---CCeEEEEecccCCCCeeec
Q psy2748 92 HPLVANLIHA---KNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 92 ~plV~~~l~G---~N~~IfaYGqTGSGKTyTm 120 (690)
-+-++.++.| ...++.-||.+|||||.-+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 3557788876 4778899999999998754
No 207
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=35.30 E-value=20 Score=42.15 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=19.1
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
|..++.|.| |++..+||||||.+.
T Consensus 40 ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 40 LPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 455788998 566889999999765
No 208
>PRK05580 primosome assembly protein PriA; Validated
Probab=35.28 E-value=17 Score=43.61 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=22.5
Q ss_pred CCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 79 VDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 79 ~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
....|+++++.+... + ++ ..++.+|+||||||.+.
T Consensus 145 Lt~~Q~~ai~~i~~~----~--~~-~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 145 LNPEQAAAVEAIRAA----A--GF-SPFLLDGVTGSGKTEVY 179 (679)
T ss_pred CCHHHHHHHHHHHhc----c--CC-CcEEEECCCCChHHHHH
Confidence 344566665555321 1 23 34889999999999765
No 209
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=34.87 E-value=14 Score=41.40 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=15.3
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
+--++.+|.||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 446789999999999876
No 210
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=34.62 E-value=34 Score=41.56 Aligned_cols=18 Identities=50% Similarity=0.625 Sum_probs=16.0
Q ss_pred eEEEEecccCCCCeeecC
Q psy2748 104 GLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~ 121 (690)
..|.-.|+||+|||.|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 578889999999999983
No 211
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=34.32 E-value=28 Score=39.48 Aligned_cols=17 Identities=47% Similarity=0.622 Sum_probs=15.4
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
.-++.+|.||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 56899999999999987
No 212
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=34.29 E-value=24 Score=41.20 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=26.3
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeee
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyT 119 (690)
.+|+.+++.+. .- +.+...++.....-|+-||++|+|||+.
T Consensus 62 ~~f~~iiGqs~----~i----~~l~~al~~~~~~~vLi~Ge~GtGKt~l 102 (531)
T TIGR02902 62 KSFDEIIGQEE----GI----KALKAALCGPNPQHVIIYGPPGVGKTAA 102 (531)
T ss_pred CCHHHeeCcHH----HH----HHHHHHHhCCCCceEEEECCCCCCHHHH
Confidence 46788877543 22 2233334455556677899999999863
No 213
>KOG3859|consensus
Probab=34.23 E-value=22 Score=38.00 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHhhHHHH-HHHhccCCeEEEEecccCCCCeeec
Q psy2748 87 YSEVAHPLV-ANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 87 F~~v~~plV-~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
|+..-..|| .++-+|+.--|+|.|.||-|||.-|
T Consensus 25 FdsLPdQLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 25 FDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred cccChHHHHHHHHhcCceEEEEEeccCCccHHHHH
No 214
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=34.03 E-value=20 Score=39.63 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.9
Q ss_pred EEEecccCCCCeeecC
Q psy2748 106 LLTYGVTGSGKTYTMN 121 (690)
Q Consensus 106 IfaYGqTGSGKTyTm~ 121 (690)
++..|.||||||+++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999998874
No 215
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=33.98 E-value=16 Score=42.07 Aligned_cols=18 Identities=44% Similarity=0.604 Sum_probs=15.9
Q ss_pred eEEEEecccCCCCeeecC
Q psy2748 104 GLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~ 121 (690)
..+.-.|+||+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 578889999999999984
No 216
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=33.91 E-value=24 Score=37.99 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=19.5
Q ss_pred HHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 92 HPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 92 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
..++..++.+. ..+.-.|.||||||..|
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 34555555443 46677899999999876
No 217
>PF13173 AAA_14: AAA domain
Probab=33.85 E-value=17 Score=33.52 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=14.7
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
-.++-+|+.|+|||+.|
T Consensus 3 ~~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLL 19 (128)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35788999999999977
No 218
>PRK06696 uridine kinase; Validated
Probab=33.79 E-value=36 Score=34.64 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=22.2
Q ss_pred HHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 85 QVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 85 evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
++.+.++.-++. .-.+....|..-|.+|||||+..
T Consensus 5 ~~~~~la~~~~~-~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 5 QLIKELAEHILT-LNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHH-hCCCCceEEEEECCCCCCHHHHH
Confidence 344444443332 12456678888999999998754
No 219
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=33.76 E-value=28 Score=38.36 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=20.8
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+.+.+|.+..+|..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 34457788888899999999999764
No 220
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=33.62 E-value=17 Score=38.86 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=17.2
Q ss_pred ccCCeEEEEecccCCCCee
Q psy2748 100 HAKNGLLLTYGVTGSGKTY 118 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTy 118 (690)
.|++-.||..|++|+|||.
T Consensus 1 kg~~fnImVvG~sG~GKTT 19 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTT 19 (281)
T ss_dssp HEEEEEEEEEECTTSSHHH
T ss_pred CCceEEEEEECCCCCCHHH
Confidence 4888899999999999985
No 221
>PRK14974 cell division protein FtsY; Provisional
Probab=33.52 E-value=46 Score=36.55 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=16.6
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
...|.-.|++|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4688999999999999883
No 222
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=33.51 E-value=33 Score=41.40 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=25.1
Q ss_pred HHHHhhHHHHHHH-hccCCeEEEEecccCCCCeeec
Q psy2748 86 VYSEVAHPLVANL-IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 86 vF~~v~~plV~~~-l~G~N~~IfaYGqTGSGKTyTm 120 (690)
||.-. .....++ -.|.|-+|+.-|.+|||||.+.
T Consensus 69 ifaiA-~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 69 IFAIA-EEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred HHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 55544 2233333 3799999999999999999987
No 223
>PRK00131 aroK shikimate kinase; Reviewed
Probab=33.48 E-value=19 Score=34.33 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=14.5
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
-+|+-+|..|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999998764
No 224
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=33.10 E-value=30 Score=40.15 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=19.2
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..++.|.| +++..+||||||...
T Consensus 151 aip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 151 AIPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHHhcCCC--EEEEecCCCCccHHH
Confidence 3556678887 567789999999765
No 225
>PRK07261 topology modulation protein; Provisional
Probab=32.60 E-value=19 Score=35.30 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=12.6
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
|+-.|.+|||||.-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999998654
No 226
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.53 E-value=38 Score=38.44 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=15.6
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
...++..|++|+|||.|+.
T Consensus 223 ~~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3467778999999999874
No 227
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=32.48 E-value=29 Score=41.15 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=18.3
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+|..++.|.++++ .++||||||.+.
T Consensus 33 ai~~il~g~dvlv--~apTGsGKTl~y 57 (607)
T PRK11057 33 IIDAVLSGRDCLV--VMPTGGGKSLCY 57 (607)
T ss_pred HHHHHHcCCCEEE--EcCCCchHHHHH
Confidence 3445678988655 479999999754
No 228
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=32.46 E-value=16 Score=44.43 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=16.2
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
|.-++..|.||||||++|.
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 4567889999999999984
No 229
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=31.65 E-value=27 Score=41.69 Aligned_cols=19 Identities=42% Similarity=0.581 Sum_probs=16.1
Q ss_pred eEEEEecccCCCCeeecCC
Q psy2748 104 GLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~G 122 (690)
..++-.|+.|+|||||+..
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred CeEEEEcCCCCCHHHHHHH
Confidence 4567999999999999864
No 230
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=31.53 E-value=3.9e+02 Score=29.13 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=9.4
Q ss_pred CCCchhhhcccccCCCC
Q psy2748 311 FRESKLTHLFKSYFTGD 327 (690)
Q Consensus 311 YRdSKLT~LLkdsLgGn 327 (690)
|.+++. ||+.|+.-+
T Consensus 94 ~~~nPp--LF~EY~~a~ 108 (312)
T smart00787 94 LINNPP--LFKEYFSAS 108 (312)
T ss_pred hhcCcH--HHHHHHcCC
Confidence 445555 778887543
No 231
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=31.50 E-value=18 Score=44.92 Aligned_cols=21 Identities=48% Similarity=0.675 Sum_probs=18.1
Q ss_pred cCCeEEEEecccCCCCeeecC
Q psy2748 101 AKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 101 G~N~~IfaYGqTGSGKTyTm~ 121 (690)
..|+-.|..|.||||||++|.
T Consensus 473 ~~n~n~~I~G~TGSGKS~l~~ 493 (893)
T TIGR03744 473 KKNAHLLILGPTGAGKSATLT 493 (893)
T ss_pred CCcccEEEECCCCCCHHHHHH
Confidence 347888899999999999984
No 232
>KOG1029|consensus
Probab=31.17 E-value=3e+02 Score=33.48 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=12.9
Q ss_pred CeeEEecccccccccCCCC
Q psy2748 636 GAQVVFNELETLRQTSPLS 654 (690)
Q Consensus 636 g~~v~f~d~e~Lkq~sp~~ 654 (690)
|..+--..+|.|.+++|..
T Consensus 872 ~st~~~~s~es~sae~p~~ 890 (1118)
T KOG1029|consen 872 GSTTKIESPESLSAEAPGA 890 (1118)
T ss_pred cccccccCcccccccCccc
Confidence 4445566777788887774
No 233
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=31.13 E-value=29 Score=40.34 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=31.0
Q ss_pred ceEEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCC
Q psy2748 68 EVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGK 116 (690)
Q Consensus 68 ~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGK 116 (690)
...|+||.+.+.+..-.++-+. + ..+.+.+++|+-+|.||+||
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~-----a-kr~A~tdstVLi~GESGTGK 281 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLEL-----A-KRIAKTDSTVLILGESGTGK 281 (560)
T ss_pred ccccchhhhccCCHHHHHHHHH-----H-HhhcCCCCcEEEecCCCccH
Confidence 4569999999876432222222 1 24678999999999999999
No 234
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=30.65 E-value=36 Score=40.94 Aligned_cols=21 Identities=38% Similarity=0.282 Sum_probs=16.2
Q ss_pred ccCCeEEEEecccCCCCeeec
Q psy2748 100 HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyTm 120 (690)
.++..-++..|+||||||...
T Consensus 279 ~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 279 SPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred ccCCceEEEECCCCCcHHHHH
Confidence 344456788999999999765
No 235
>PHA02624 large T antigen; Provisional
Probab=30.60 E-value=39 Score=40.01 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=21.0
Q ss_pred HHHHHhccCCe--EEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNG--LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~--~IfaYGqTGSGKTyTm 120 (690)
+++.++.|.-. ||+-||+-|||||+-.
T Consensus 420 ~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 420 ILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 45667777655 8999999999998644
No 236
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=30.50 E-value=26 Score=40.68 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=31.5
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+.|+.+.|.+..=+++.+.+. . +...+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~-----~-~a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQAR-----V-VARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHHHH-----H-HhCcCCCEEEECCCCccHHHHH
Confidence 3789999987665555554442 2 2356788999999999997543
No 237
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=30.45 E-value=26 Score=40.66 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=31.6
Q ss_pred eEEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 69 VQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 69 ~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
..+.|+.+++.+..-..+.+.+. . +...+.-|+-+|.+||||++.-
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~-----~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQAR-----K-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccccceeECCHHHHHHHHHHH-----H-HhCCCCCEEEECCCCccHHHHH
Confidence 45799999987654444444432 1 2345778999999999997643
No 238
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=30.27 E-value=22 Score=34.61 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=12.4
Q ss_pred EEEecccCCCCeee
Q psy2748 106 LLTYGVTGSGKTYT 119 (690)
Q Consensus 106 IfaYGqTGSGKTyT 119 (690)
|+.+|..|||||+.
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 78999999999864
No 239
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=30.18 E-value=30 Score=41.11 Aligned_cols=42 Identities=24% Similarity=0.380 Sum_probs=29.0
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+|+.++|. ...... ++..+..++...++-||++|+|||+..
T Consensus 151 ~~~~~iiGq----s~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVGQ----ERAIKA----LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhceeC----cHHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 467777754 334433 344455677777888999999998765
No 240
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=29.95 E-value=41 Score=40.34 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=25.4
Q ss_pred HHHHHhhHHHHHHHh-ccCCeEEEEecccCCCCeeec
Q psy2748 85 QVYSEVAHPLVANLI-HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 85 evF~~v~~plV~~~l-~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+|... ......++ .+.|-+|+.-|.+|||||.|+
T Consensus 68 HifavA-~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 68 HIFAIA-DAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 356543 22333333 589999999999999999988
No 241
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=29.86 E-value=34 Score=34.90 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=21.5
Q ss_pred HHHHHHHhccC---CeEEEEecccCCCCeeec
Q psy2748 92 HPLVANLIHAK---NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 92 ~plV~~~l~G~---N~~IfaYGqTGSGKTyTm 120 (690)
-+-++.++.|= .++++-+|.+|||||+-.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 34567777542 778888899999998654
No 242
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=29.85 E-value=31 Score=40.59 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=19.0
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+|..+++|.|+ ++..+||+|||.+.
T Consensus 21 ~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 21 IISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 45556789985 55579999999875
No 243
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=29.65 E-value=35 Score=40.71 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=23.9
Q ss_pred ChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 82 sQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.|.++++.+..-+ -+ +..+++-..||+|||+..
T Consensus 1 ~Q~~~~~~i~~al----~~--~~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 1 EQALFYLNCLTSL----RQ--KRIGMLEASTGVGKTLAM 33 (636)
T ss_pred CHHHHHHHHHHHH----hc--CCeEEEEcCCCCcHHHHH
Confidence 3788887775433 22 356888999999999765
No 244
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=29.22 E-value=41 Score=34.04 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=22.3
Q ss_pred HHHHHHHhccC---CeEEEEecccCCCCeeec
Q psy2748 92 HPLVANLIHAK---NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 92 ~plV~~~l~G~---N~~IfaYGqTGSGKTyTm 120 (690)
-+-++.++.|- ...+.-||.+|||||...
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 45577888543 567899999999998765
No 245
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=29.21 E-value=21 Score=37.83 Aligned_cols=14 Identities=50% Similarity=0.729 Sum_probs=12.1
Q ss_pred EEecccCCCCeeec
Q psy2748 107 LTYGVTGSGKTYTM 120 (690)
Q Consensus 107 faYGqTGSGKTyTm 120 (690)
.-.|.+|||||.||
T Consensus 31 vliGpSGsGKTTtL 44 (309)
T COG1125 31 VLIGPSGSGKTTTL 44 (309)
T ss_pred EEECCCCCcHHHHH
Confidence 34699999999998
No 246
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=29.14 E-value=41 Score=41.12 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=25.5
Q ss_pred HHHHHhhHHHHHHHh-ccCCeEEEEecccCCCCeeec
Q psy2748 85 QVYSEVAHPLVANLI-HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 85 evF~~v~~plV~~~l-~G~N~~IfaYGqTGSGKTyTm 120 (690)
.||... .....+++ .|.|-+|+.-|.+|||||.|.
T Consensus 68 HifaiA-~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 68 HIYSLA-QTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 355544 22333333 689999999999999999987
No 247
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=29.12 E-value=44 Score=31.31 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=19.4
Q ss_pred hHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 91 AHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 91 ~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
++.+...+-.| ..|+-+|.-|||||+-.-
T Consensus 5 a~~l~~~l~~g--~vi~L~GdLGaGKTtf~r 33 (123)
T PF02367_consen 5 AKKLAQILKPG--DVILLSGDLGAGKTTFVR 33 (123)
T ss_dssp HHHHHHHHSS---EEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhCCCC--CEEEEECCCCCCHHHHHH
Confidence 44444444222 578999999999997653
No 248
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.93 E-value=22 Score=39.81 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=16.5
Q ss_pred CeEEEEecccCCCCeeecCC
Q psy2748 103 NGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~G 122 (690)
...++-.|++|+|||+|+..
T Consensus 206 ~~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34678899999999999853
No 249
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=28.84 E-value=19 Score=34.35 Aligned_cols=14 Identities=43% Similarity=0.726 Sum_probs=10.9
Q ss_pred EEEecccCCCCeee
Q psy2748 106 LLTYGVTGSGKTYT 119 (690)
Q Consensus 106 IfaYGqTGSGKTyT 119 (690)
|+-.|.+|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35679999999753
No 250
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=28.84 E-value=22 Score=33.19 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.2
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
+|+.+|..|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999998654
No 251
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=28.79 E-value=31 Score=41.47 Aligned_cols=42 Identities=24% Similarity=0.350 Sum_probs=29.0
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCee
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTY 118 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTy 118 (690)
+.|+.++|.+..-..+.+.+.. +...+..|+-+|.+|||||+
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~------~a~~~~pVLI~GE~GTGK~~ 414 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEM------VAQSDSTVLILGETGTGKEL 414 (686)
T ss_pred ccccceeecCHHHHHHHHHHHH------HhCCCCCEEEECCCCcCHHH
Confidence 5677777766545555444421 34567789999999999986
No 252
>PRK01172 ski2-like helicase; Provisional
Probab=28.32 E-value=35 Score=40.81 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=16.1
Q ss_pred HHhccCCeEEEEecccCCCCeee
Q psy2748 97 NLIHAKNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 97 ~~l~G~N~~IfaYGqTGSGKTyT 119 (690)
.+..|.| ++..++||||||..
T Consensus 33 ~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 33 QLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHhcCCc--EEEECCCCchHHHH
Confidence 3467777 56678999999975
No 253
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=28.28 E-value=23 Score=34.42 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=14.1
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
+|+-.|.+|||||..+
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999877
No 254
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=28.17 E-value=34 Score=35.50 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=22.7
Q ss_pred EEecccCCCCeeecC------CCC-----CCCChHHHHHHHHHHHhc
Q psy2748 107 LTYGVTGSGKTYTMN------GTN-----SDGGIMMRCIDVLFNSIG 142 (690)
Q Consensus 107 faYGqTGSGKTyTm~------G~~-----~~~GIiPR~l~~LF~~i~ 142 (690)
..+|++|+|||.|+- |-. -+.++=..++..||.-+.
T Consensus 36 ~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~ 82 (231)
T PF12774_consen 36 ALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLA 82 (231)
T ss_dssp EEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHH
T ss_pred CCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHh
Confidence 469999999999983 322 245555566666665443
No 255
>CHL00181 cbbX CbbX; Provisional
Probab=28.17 E-value=34 Score=36.59 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=12.9
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 667999999999865
No 256
>KOG1803|consensus
Probab=28.13 E-value=43 Score=39.30 Aligned_cols=26 Identities=42% Similarity=0.552 Sum_probs=19.1
Q ss_pred HHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
|.-+++-+ -+.+-.|+.|+|||||+.
T Consensus 194 v~~~~~~k-~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 194 VSFAINNK-DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred HHHHhccC-CceEeeCCCCCCceeeHH
Confidence 33333334 577889999999999985
No 257
>PRK08118 topology modulation protein; Reviewed
Probab=28.12 E-value=25 Score=34.35 Aligned_cols=13 Identities=38% Similarity=0.675 Sum_probs=11.7
Q ss_pred EEEecccCCCCee
Q psy2748 106 LLTYGVTGSGKTY 118 (690)
Q Consensus 106 IfaYGqTGSGKTy 118 (690)
|+-.|+.|||||.
T Consensus 4 I~I~G~~GsGKST 16 (167)
T PRK08118 4 IILIGSGGSGKST 16 (167)
T ss_pred EEEECCCCCCHHH
Confidence 7889999999985
No 258
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.11 E-value=25 Score=39.79 Aligned_cols=19 Identities=42% Similarity=0.536 Sum_probs=16.6
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
...+.-.|+||+|||.|+-
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4578899999999999983
No 259
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=28.08 E-value=18 Score=41.91 Aligned_cols=15 Identities=47% Similarity=0.775 Sum_probs=12.7
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
|+-||++|+|||+..
T Consensus 219 ILLyGPPGTGKT~LA 233 (512)
T TIGR03689 219 VLLYGPPGCGKTLIA 233 (512)
T ss_pred eEEECCCCCcHHHHH
Confidence 677999999998754
No 260
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=28.00 E-value=55 Score=34.05 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=22.3
Q ss_pred HHHHHHHhc--cCCeEEEEecccCCCCeeec
Q psy2748 92 HPLVANLIH--AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 92 ~plV~~~l~--G~N~~IfaYGqTGSGKTyTm 120 (690)
..|.+.+.. .....|.-||..|+|||...
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 445555555 67889999999999998654
No 261
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=27.81 E-value=25 Score=34.32 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=12.6
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998544
No 262
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=27.78 E-value=5.3e+02 Score=28.06 Aligned_cols=8 Identities=50% Similarity=1.240 Sum_probs=5.6
Q ss_pred cccccCCC
Q psy2748 319 LFKSYFTG 326 (690)
Q Consensus 319 LLkdsLgG 326 (690)
||+.|+..
T Consensus 105 Lf~EY~~a 112 (325)
T PF08317_consen 105 LFREYYTA 112 (325)
T ss_pred HHHHHHcC
Confidence 77777754
No 263
>PHA01747 putative ATP-dependent protease
Probab=27.76 E-value=35 Score=38.00 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=27.3
Q ss_pred HHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 88 SEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 88 ~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
=.-.-|+|+.-..+.|.-++-.|+-|+||||+.
T Consensus 175 L~RLiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 175 LPRLLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred HHhhhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 333578888777888999999999999999976
No 264
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=27.65 E-value=34 Score=40.03 Aligned_cols=43 Identities=26% Similarity=0.410 Sum_probs=28.1
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCee
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTY 118 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTy 118 (690)
.|.|+.++|.+..=+.+.+.+ . .+...+..|+-+|.+||||++
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~i-----~-~~A~s~~pVLI~GE~GTGKe~ 257 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQTI-----L-LYARSSAAVLIQGETGTGKEL 257 (538)
T ss_pred ccchhheeeCCHHHHHHHHHH-----H-HHhCCCCcEEEECCCCCCHHH
Confidence 467777777654333333322 2 245668899999999999964
No 265
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=27.26 E-value=27 Score=37.13 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=18.3
Q ss_pred ccCCeEEEEecccCCCCeeec
Q psy2748 100 HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyTm 120 (690)
.|+.-.|+..|.+|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488899999999999998654
No 266
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=27.25 E-value=2.7e+02 Score=26.65 Aligned_cols=55 Identities=13% Similarity=0.311 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcc
Q psy2748 424 LRMMKERQEEKTKATKSKLSQKFQSKMQAQAETYE---SKLRHNEKKVIRKVKNLIDSQ 479 (690)
Q Consensus 424 ~~~L~~el~e~e~~~k~~le~~~~~kl~~~~ek~e---~kl~~~eek~L~qlk~il~~~ 479 (690)
++.|+....|-....-+.+.+++...+.+-++..+ .++.++.++ |.++++.+.+.
T Consensus 11 iR~lra~~re~~~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~k-l~~~r~~m~~~ 68 (135)
T PRK10947 11 IRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRK-LQQYREMLIAD 68 (135)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc
Confidence 34444444444444445555555555555555444 455566677 88888888764
No 267
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=27.09 E-value=41 Score=40.73 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=35.8
Q ss_pred CCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCC---------CC-----CCCChHHHHHHHHHHHhc
Q psy2748 79 VDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG---------TN-----SDGGIMMRCIDVLFNSIG 142 (690)
Q Consensus 79 ~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G---------~~-----~~~GIiPR~l~~LF~~i~ 142 (690)
-+..|...++.+.. .+ .|+ ...+-+|+||||||-..+. -. .+-++.|+.++.+=...+
T Consensus 199 Ln~~Q~~a~~~i~~----~~-~~~-~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg 270 (730)
T COG1198 199 LNQEQQAAVEAILS----SL-GGF-APFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG 270 (730)
T ss_pred cCHHHHHHHHHHHH----hc-ccc-cceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC
Confidence 34556666666543 23 344 4566799999999955432 11 356777777776655554
No 268
>PRK08233 hypothetical protein; Provisional
Probab=27.04 E-value=28 Score=33.58 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=12.8
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.|+--|.+|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999998755
No 269
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=27.00 E-value=28 Score=36.97 Aligned_cols=18 Identities=44% Similarity=0.684 Sum_probs=14.2
Q ss_pred eEEEEecccCCCCeeecC
Q psy2748 104 GLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~ 121 (690)
.+|...|++|+|||.|..
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 455555999999999984
No 270
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=26.88 E-value=1.1e+02 Score=30.27 Aligned_cols=31 Identities=19% Similarity=0.550 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy2748 444 QKFQSKMQAQAETYESKLRHNEKKVIRKVKNLIDSQ 479 (690)
Q Consensus 444 ~~~~~kl~~~~ek~e~kl~~~eek~L~qlk~il~~~ 479 (690)
+.+.+.|.+.+|++.++|.+ |+|++.|.+.+
T Consensus 50 ~eLkNeLREVREELkEKmeE-----IKQIKdiMDKD 80 (205)
T PF15079_consen 50 QELKNELREVREELKEKMEE-----IKQIKDIMDKD 80 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhh
No 271
>PRK06217 hypothetical protein; Validated
Probab=26.85 E-value=26 Score=34.43 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=12.5
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998643
No 272
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=26.78 E-value=30 Score=37.41 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=13.3
Q ss_pred eEEEEecccCCCCee
Q psy2748 104 GLLLTYGVTGSGKTY 118 (690)
Q Consensus 104 ~~IfaYGqTGSGKTy 118 (690)
-.|+-.|+||||||-
T Consensus 5 ~ii~I~GpTasGKS~ 19 (300)
T PRK14729 5 KIVFIFGPTAVGKSN 19 (300)
T ss_pred cEEEEECCCccCHHH
Confidence 478999999999986
No 273
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=26.61 E-value=25 Score=34.88 Aligned_cols=15 Identities=40% Similarity=0.426 Sum_probs=12.6
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
|.-.|.+|||||+.-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999999764
No 274
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.56 E-value=23 Score=38.38 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=15.7
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
...|+-.|.||||||..|.
T Consensus 143 ~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 143 RKSIIICGGTASGKTTLLN 161 (312)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3457889999999999884
No 275
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=26.52 E-value=3.6e+02 Score=24.45 Aligned_cols=28 Identities=18% Similarity=0.429 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2748 448 SKMQAQAETYESKLRHNEKKVIRKVKNLI 476 (690)
Q Consensus 448 ~kl~~~~ek~e~kl~~~eek~L~qlk~il 476 (690)
.+|..+++++++++...++. |..+++-|
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~-i~~le~~I 99 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKE-IDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 33445555555555555555 55555443
No 276
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.47 E-value=33 Score=40.94 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=22.1
Q ss_pred CceeeEEEeeccCCCCeeecCCCCeeEEecccccccc
Q psy2748 613 GEMETHLFKVNYLDGDVLPTVGGGAQVVFNELETLRQ 649 (690)
Q Consensus 613 ge~eTkl~K~~~~~gdv~~t~ggg~~v~f~d~e~Lkq 649 (690)
|+|.+=+.+ +-+|++.-.+-.-++||..|++
T Consensus 544 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 574 (637)
T TIGR00602 544 TQLLPYLAL------DTIPMRNDAQISFIDDLGRLPL 574 (637)
T ss_pred ccccceeec------ccccccchhhhHHhhccccccc
Confidence 445554444 8888887777778888887765
No 277
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=26.45 E-value=50 Score=37.51 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=16.6
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
-..|+-.|.+|+|||.|..
T Consensus 100 ~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4678999999999999984
No 278
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=26.44 E-value=28 Score=32.13 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=12.4
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
|+-.|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999998743
No 279
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=26.30 E-value=25 Score=42.67 Aligned_cols=19 Identities=53% Similarity=0.714 Sum_probs=17.0
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
|+-++..|.||||||++|.
T Consensus 434 ~~n~~I~G~tGsGKS~~~~ 452 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLLN 452 (785)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 7788999999999999883
No 280
>PRK13767 ATP-dependent helicase; Provisional
Probab=26.12 E-value=36 Score=42.22 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=17.5
Q ss_pred HHHhccCCeEEEEecccCCCCeeec
Q psy2748 96 ANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 96 ~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
..++.|.|++| ..+||||||...
T Consensus 42 ~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 42 PLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHcCCCEEE--ECCCCCcHHHHH
Confidence 34578998655 569999999874
No 281
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=26.00 E-value=33 Score=37.55 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=17.5
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
++-.+.. +.-|+-.|.+|+|||...
T Consensus 57 vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 57 ICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 4444443 445888999999998755
No 282
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=25.88 E-value=41 Score=34.08 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=26.3
Q ss_pred HHHHHhcc-C--CeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcc
Q psy2748 94 LVANLIHA-K--NGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGR 143 (690)
Q Consensus 94 lV~~~l~G-~--N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~ 143 (690)
-++.++.| . +++++.+|.+|||||.- +++.+++.+..
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l-------------~~q~l~~~~~~ 46 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTL-------------ALQFLYNGLKN 46 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHH-------------HHHHHHHHHHH
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHH-------------HHHHHHHhhhh
Confidence 45667743 3 88899999999999642 56667666554
No 283
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=25.78 E-value=36 Score=39.74 Aligned_cols=44 Identities=23% Similarity=0.401 Sum_probs=29.0
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeee
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyT 119 (690)
.|.|+.++|.+..=+.+.+.+ + .+...+..|+-+|.+||||++.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i-----~-~~A~~~~pVLI~GE~GTGKe~l 251 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALV-----R-LYARSDATVLILGESGTGKELV 251 (526)
T ss_pred ccchhheeeCCHHHHHHHHHH-----H-HHhCCCCcEEEECCCCcCHHHH
Confidence 477888887654333333332 2 2455678999999999999653
No 284
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=25.67 E-value=28 Score=29.09 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=12.6
Q ss_pred EEEecccCCCCeeecC
Q psy2748 106 LLTYGVTGSGKTYTMN 121 (690)
Q Consensus 106 IfaYGqTGSGKTyTm~ 121 (690)
++.+|..|+|||.+..
T Consensus 2 ~~~~g~~G~Gktt~~~ 17 (99)
T cd01983 2 IVVTGKGGVGKTTLAA 17 (99)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5667888999998763
No 285
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=25.58 E-value=26 Score=37.36 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=13.7
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
-|+-+|++|+|||+.-
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4788999999999765
No 286
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=25.50 E-value=46 Score=40.99 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=19.7
Q ss_pred HHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 92 HPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 92 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
..+++.+-++. .|+..|+||||||..+
T Consensus 11 ~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 11 PELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 45666655444 4677999999999876
No 287
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=25.30 E-value=48 Score=33.60 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=20.9
Q ss_pred HHHHHHhc-cC--CeEEEEecccCCCCeeec
Q psy2748 93 PLVANLIH-AK--NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 93 plV~~~l~-G~--N~~IfaYGqTGSGKTyTm 120 (690)
+-++.++. |+ ..++.-+|.+|+|||+..
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 44666664 43 678888999999998754
No 288
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=25.24 E-value=5.7e+02 Score=24.36 Aligned_cols=34 Identities=15% Similarity=0.394 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2748 444 QKFQSKMQAQAETYESKLRHNEKKVIRKVKNLIDS 478 (690)
Q Consensus 444 ~~~~~kl~~~~ek~e~kl~~~eek~L~qlk~il~~ 478 (690)
++++.++.+..+++.++++++|+. |+.++++|..
T Consensus 107 ~~L~~E~~~~~~el~~~v~e~e~l-l~~v~~~i~~ 140 (144)
T PF11221_consen 107 KELEEENEEAEEELQEAVKEAEEL-LKQVQELIRE 140 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 344555666667777777888887 8888888865
No 289
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=25.20 E-value=26 Score=40.31 Aligned_cols=73 Identities=21% Similarity=0.244 Sum_probs=39.1
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHH-Hhc--cC--CeEEEEecccCCCCeeecCC------CC------C-----CC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVAN-LIH--AK--NGLLLTYGVTGSGKTYTMNG------TN------S-----DG 127 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~-~l~--G~--N~~IfaYGqTGSGKTyTm~G------~~------~-----~~ 127 (690)
..+|+.|.+.+...+++-+.+ ..+-.. .+. |. ...++-||+.|+|||+..-. -+ . ..
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~-~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~ 129 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIV-DFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 129 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHH-HHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHh
Confidence 467888877655444444322 211100 111 11 22477899999999988632 11 0 12
Q ss_pred ChHHHHHHHHHHHhcc
Q psy2748 128 GIMMRCIDVLFNSIGR 143 (690)
Q Consensus 128 GIiPR~l~~LF~~i~~ 143 (690)
|.-...+..+|.....
T Consensus 130 g~~~~~l~~~f~~a~~ 145 (495)
T TIGR01241 130 GVGASRVRDLFEQAKK 145 (495)
T ss_pred cccHHHHHHHHHHHHh
Confidence 3444567778877644
No 290
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=25.18 E-value=24 Score=39.31 Aligned_cols=18 Identities=44% Similarity=0.641 Sum_probs=13.0
Q ss_pred eEEEEecccCCCCeeecC
Q psy2748 104 GLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~ 121 (690)
.-++..|.||||||.+|.
T Consensus 16 ~~~li~G~~GsGKT~~i~ 33 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAIR 33 (386)
T ss_dssp G-EEEEE-TTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 346789999999997663
No 291
>PTZ00110 helicase; Provisional
Probab=25.16 E-value=40 Score=39.40 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=18.6
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..++.|.|.. +.++||||||.+.
T Consensus 161 ip~~l~G~dvI--~~ApTGSGKTlay 184 (545)
T PTZ00110 161 WPIALSGRDMI--GIAETGSGKTLAF 184 (545)
T ss_pred HHHHhcCCCEE--EEeCCCChHHHHH
Confidence 44577898764 5679999999875
No 292
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=25.12 E-value=51 Score=33.89 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=19.7
Q ss_pred HHHHHHhc-cC--CeEEEEecccCCCCee
Q psy2748 93 PLVANLIH-AK--NGLLLTYGVTGSGKTY 118 (690)
Q Consensus 93 plV~~~l~-G~--N~~IfaYGqTGSGKTy 118 (690)
+-++.++. |+ ..+++-+|.+|||||.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 44666665 43 6788999999999974
No 293
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=25.03 E-value=3.6e+02 Score=34.25 Aligned_cols=8 Identities=25% Similarity=0.218 Sum_probs=3.5
Q ss_pred cccccCCC
Q psy2748 540 RRRSRSAG 547 (690)
Q Consensus 540 ~rrs~sa~ 547 (690)
|--|-|.+
T Consensus 660 ~~~~~~~~ 667 (1021)
T PTZ00266 660 HDGNFSRG 667 (1021)
T ss_pred CCcccccc
Confidence 44444444
No 294
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=24.99 E-value=51 Score=33.13 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=21.0
Q ss_pred HHHHHHhc-cC--CeEEEEecccCCCCeeec
Q psy2748 93 PLVANLIH-AK--NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 93 plV~~~l~-G~--N~~IfaYGqTGSGKTyTm 120 (690)
+-++.++. |. ...+.-+|.+|||||...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 45677775 43 456889999999998764
No 295
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=24.98 E-value=28 Score=35.28 Aligned_cols=16 Identities=44% Similarity=0.503 Sum_probs=13.6
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.|+-.|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999664
No 296
>PRK04040 adenylate kinase; Provisional
Probab=24.97 E-value=32 Score=34.32 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=14.0
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.|+.+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 5789999999999765
No 297
>CHL00176 ftsH cell division protein; Validated
Probab=24.87 E-value=27 Score=41.75 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=14.1
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
-|+-||++|+|||+..
T Consensus 218 gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 218 GVLLVGPPGTGKTLLA 233 (638)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4788999999999876
No 298
>KOG0340|consensus
Probab=24.77 E-value=73 Score=35.29 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=21.4
Q ss_pred HHHHHHhccCCeEEEEecccCCCCeeecCC
Q psy2748 93 PLVANLIHAKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 93 plV~~~l~G~N~~IfaYGqTGSGKTyTm~G 122 (690)
..|-.+|.|.+|. ....||||||..+-+
T Consensus 36 ~cIpkILeGrdci--g~AkTGsGKT~AFaL 63 (442)
T KOG0340|consen 36 ACIPKILEGRDCI--GCAKTGSGKTAAFAL 63 (442)
T ss_pred hhhHHHhcccccc--cccccCCCcchhhhH
Confidence 3566678999974 566899999988754
No 299
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=24.68 E-value=46 Score=34.65 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=18.3
Q ss_pred HHHHhcc---CCeEEEEecccCCCCee
Q psy2748 95 VANLIHA---KNGLLLTYGVTGSGKTY 118 (690)
Q Consensus 95 V~~~l~G---~N~~IfaYGqTGSGKTy 118 (690)
++.++.| ....++-||..|||||-
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~ 38 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTI 38 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHH
Confidence 4555654 37788999999999963
No 300
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=24.65 E-value=33 Score=32.71 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=13.3
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.|.-+|..|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998654
No 301
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=24.48 E-value=59 Score=36.82 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=29.4
Q ss_pred ChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 82 sQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
..+..-+.+.. -++.+-+|....-|..|.-||||||.+.
T Consensus 29 Gr~~e~~~l~~-~l~~v~~G~s~~kfi~G~YGsGKTf~l~ 67 (416)
T PF10923_consen 29 GREREIEALDR-DLDRVADGGSSFKFIRGEYGSGKTFFLR 67 (416)
T ss_pred chHHHHHHHHH-HHHHHhCCCCeEEEEEeCCCCcHHHHHH
Confidence 33444444444 3577889999999999999999999874
No 302
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=24.46 E-value=49 Score=35.35 Aligned_cols=36 Identities=25% Similarity=0.135 Sum_probs=24.5
Q ss_pred CCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 79 VDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 79 ~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+-..|.++-+.+ .+.+-.|.+ ++.=.+||+|||.+.
T Consensus 9 ~r~~Q~~~m~~v----~~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00488 9 PYPIQYEFMEEL----KRVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CCHHHHHHHHHH----HHHHHcCCc--EEEECCCCcchhHHH
Confidence 455677766655 344556654 556779999999877
No 303
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=24.46 E-value=49 Score=35.35 Aligned_cols=36 Identities=25% Similarity=0.135 Sum_probs=24.5
Q ss_pred CCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 79 VDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 79 ~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+-..|.++-+.+ .+.+-.|.+ ++.=.+||+|||.+.
T Consensus 9 ~r~~Q~~~m~~v----~~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00489 9 PYPIQYEFMEEL----KRVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CCHHHHHHHHHH----HHHHHcCCc--EEEECCCCcchhHHH
Confidence 455677766655 344556654 556779999999877
No 304
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=24.31 E-value=73 Score=42.28 Aligned_cols=48 Identities=31% Similarity=0.274 Sum_probs=37.8
Q ss_pred cceEEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 67 KEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 67 ~~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+++++..+.-|-+-.+|-.||+.++. .|+ .|.-+.-.|.||+|||-++
T Consensus 1820 ~err~~l~~~~~~l~sql~vlEsV~~-cIn-----~nwPlIlvG~t~~GKt~~l 1867 (4600)
T COG5271 1820 KERRPRLDDSFVLLHSQLQVLESVMR-CIN-----MNWPLILVGDTGVGKTSLL 1867 (4600)
T ss_pred cccCCCcccchhhhhhhhHHHHHHHH-HHh-----cCCCEEEEcCCCCchHHHH
Confidence 45578888888888899999998865 222 4666778899999999876
No 305
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=24.31 E-value=33 Score=33.24 Aligned_cols=15 Identities=40% Similarity=0.412 Sum_probs=12.5
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
++-+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 578999999998644
No 306
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=24.14 E-value=35 Score=37.41 Aligned_cols=20 Identities=45% Similarity=0.559 Sum_probs=17.1
Q ss_pred cCCeEEEEecccCCCCeeec
Q psy2748 101 AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 101 G~N~~IfaYGqTGSGKTyTm 120 (690)
+.-..|+-.|+.|+|||.|+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTI 156 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTI 156 (340)
T ss_pred CCcEEEEEEecCCCchHhHH
Confidence 44567889999999999998
No 307
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=24.13 E-value=34 Score=30.32 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=12.6
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
|+..|..|+|||.-+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678999999998654
No 308
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=24.12 E-value=26 Score=42.91 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=15.4
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
.+-.+.+|+||||||..|
T Consensus 426 ~g~~~I~G~tGsGKS~l~ 443 (789)
T PRK13853 426 VGMTAIFGPIGRGKTTLM 443 (789)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456789999999999887
No 309
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=24.10 E-value=32 Score=31.41 Aligned_cols=17 Identities=35% Similarity=0.261 Sum_probs=14.1
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
-.+.-.|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45677899999999876
No 310
>PRK06762 hypothetical protein; Provisional
Probab=24.08 E-value=34 Score=32.74 Aligned_cols=14 Identities=50% Similarity=0.769 Sum_probs=11.9
Q ss_pred EEEEecccCCCCee
Q psy2748 105 LLLTYGVTGSGKTY 118 (690)
Q Consensus 105 ~IfaYGqTGSGKTy 118 (690)
+|.-.|..|||||+
T Consensus 4 li~i~G~~GsGKST 17 (166)
T PRK06762 4 LIIIRGNSGSGKTT 17 (166)
T ss_pred EEEEECCCCCCHHH
Confidence 56678999999986
No 311
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=23.99 E-value=64 Score=39.40 Aligned_cols=18 Identities=44% Similarity=0.479 Sum_probs=15.9
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
.+.++-+|+||+|||+..
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 467999999999999876
No 312
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=23.99 E-value=48 Score=36.44 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=21.7
Q ss_pred HHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 93 PLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 93 plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
-|+-.+++..-+-++-.|.+|+|||..+
T Consensus 15 al~~~~~~~~~g~vli~G~~G~gKttl~ 42 (337)
T TIGR02030 15 ALLLNVIDPKIGGVMVMGDRGTGKSTAV 42 (337)
T ss_pred HHHHHhcCCCCCeEEEEcCCCCCHHHHH
Confidence 3455666766677889999999998766
No 313
>KOG0739|consensus
Probab=23.98 E-value=43 Score=36.35 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=36.5
Q ss_pred EecEEeCCCCChHHHHHHhhHHH-HHHHhccC---CeEEEEecccCCCCeeec
Q psy2748 72 VFKKIFNVDVGQKQVYSEVAHPL-VANLIHAK---NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 72 ~Fd~VF~~~asQ~evF~~v~~pl-V~~~l~G~---N~~IfaYGqTGSGKTyTm 120 (690)
..+-|-|-+.--+.+=+.|..|+ .-.++.|. ...|+-||+.|+||+|--
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLA 183 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLA 183 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHH
Confidence 45677777766667777777775 35567776 477999999999999854
No 314
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=23.97 E-value=36 Score=33.00 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.7
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.|+..|..|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778999999999865
No 315
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=23.93 E-value=56 Score=38.89 Aligned_cols=17 Identities=41% Similarity=0.323 Sum_probs=13.9
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
.-.+..|+||||||...
T Consensus 257 ~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 257 MNRLLQGDVGSGKTLVA 273 (630)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 34688999999999764
No 316
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=23.90 E-value=36 Score=40.50 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=14.8
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
.-++++|.||||||.++
T Consensus 212 ~H~lv~ApTgsGKgvg~ 228 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSV 228 (623)
T ss_pred ceEEEEeCCCCCcccee
Confidence 46789999999999976
No 317
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=23.75 E-value=60 Score=32.64 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=22.2
Q ss_pred HHHHHHHhccC---CeEEEEecccCCCCeeec
Q psy2748 92 HPLVANLIHAK---NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 92 ~plV~~~l~G~---N~~IfaYGqTGSGKTyTm 120 (690)
-+-++.++.|- ...+.-+|.+|+|||..+
T Consensus 5 ~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 5 SKALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred cHHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 45677888643 567888999999998765
No 318
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=23.71 E-value=24 Score=43.35 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=14.8
Q ss_pred eEEEEecccCCCCeeecC
Q psy2748 104 GLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~ 121 (690)
+-.+..|+||||||+.|.
T Consensus 442 gn~~I~G~tGsGKS~l~~ 459 (811)
T PRK13873 442 GHTLVVGPTGAGKSVLLA 459 (811)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 355679999999999883
No 319
>PRK10867 signal recognition particle protein; Provisional
Probab=23.70 E-value=75 Score=36.21 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=15.8
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
-..|+..|.+|||||.|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 3567888999999999873
No 320
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=23.63 E-value=45 Score=36.94 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=0.0
Q ss_pred ccCCeEEEEecccCCCCe
Q psy2748 100 HAKNGLLLTYGVTGSGKT 117 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKT 117 (690)
.|+.-+||+.|+.|+|||
T Consensus 20 ~Gi~f~im~~G~sG~GKt 37 (373)
T COG5019 20 KGIDFTIMVVGESGLGKT 37 (373)
T ss_pred cCCceEEEEecCCCCchh
No 321
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=23.58 E-value=29 Score=34.37 Aligned_cols=15 Identities=40% Similarity=0.421 Sum_probs=12.6
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
|.--|.+|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999877
No 322
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.43 E-value=59 Score=35.84 Aligned_cols=41 Identities=29% Similarity=0.460 Sum_probs=25.3
Q ss_pred EecEEeCCCCChHHHHHHhhHHHHHHHhccC-CeEEEEecccCCCCeeec
Q psy2748 72 VFKKIFNVDVGQKQVYSEVAHPLVANLIHAK-NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 72 ~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~-N~~IfaYGqTGSGKTyTm 120 (690)
+|+.|. .|+.+-+. +...+..|. .-.++-||+.|+|||.+.
T Consensus 14 ~~~~ii----Gq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDII----GQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhcc----ChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 456665 45554443 233333443 446789999999999766
No 323
>KOG0987|consensus
Probab=23.27 E-value=73 Score=37.32 Aligned_cols=36 Identities=33% Similarity=0.691 Sum_probs=25.9
Q ss_pred CCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 80 DVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 80 ~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
...|+.||+. ++..+.+..-+.+| ||.-|+||||-.
T Consensus 119 ~~eqk~v~d~----~~~~v~~~~g~~ff-~g~~gtgKt~l~ 154 (540)
T KOG0987|consen 119 TPEQKRVYDA----ILEAVENNLGGVFF-YGFGGTGKTYLL 154 (540)
T ss_pred CHHHHHHHHH----HHHHHhccccceee-eccCCccceeeH
Confidence 3468889983 33445555566777 999999999865
No 324
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.16 E-value=59 Score=35.65 Aligned_cols=41 Identities=27% Similarity=0.432 Sum_probs=25.2
Q ss_pred EecEEeCCCCChHHHHHHhhHHHHHHHhccC-CeEEEEecccCCCCeeec
Q psy2748 72 VFKKIFNVDVGQKQVYSEVAHPLVANLIHAK-NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 72 ~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~-N~~IfaYGqTGSGKTyTm 120 (690)
+|+.|. .|+.+.+ .+...+-.|. ...++-||+.|+|||++.
T Consensus 15 ~~~~ii----g~~~~~~----~l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 15 TFDDVV----GQSHITN----TLLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred cHHhcC----CcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 455554 3444433 3334444564 346778999999999766
No 325
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=23.07 E-value=7.9e+02 Score=30.16 Aligned_cols=19 Identities=11% Similarity=0.244 Sum_probs=9.4
Q ss_pred CHHHHhhHHHHHhhhhcee
Q psy2748 342 DYDENLAVMKFAEMSQEVQ 360 (690)
Q Consensus 342 ~~~ETl~TLrFA~rak~I~ 360 (690)
..+.+++.|-+-....+|+
T Consensus 364 EvE~cislLPav~g~tniq 382 (861)
T PF15254_consen 364 EVEACISLLPAVSGSTNIQ 382 (861)
T ss_pred HHHHHHHhhhhhhccccch
Confidence 3455555555544444443
No 326
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.95 E-value=55 Score=37.68 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=25.1
Q ss_pred EecEEeCCCCChHHHHHHhhHHHHHHHhccCC-eEEEEecccCCCCeeec
Q psy2748 72 VFKKIFNVDVGQKQVYSEVAHPLVANLIHAKN-GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 72 ~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N-~~IfaYGqTGSGKTyTm 120 (690)
+|+.|.| |+++ ...|...+-.|.- ..++-||+.|+|||.+.
T Consensus 12 ~~~divG----q~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 12 TFSEVVG----QDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CHHHccC----cHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5566665 4444 2223333334443 45789999999999776
No 327
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=22.94 E-value=41 Score=32.56 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=13.9
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
..|.-.|++|||||..+
T Consensus 2 ~ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLV 18 (180)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788999999998744
No 328
>PRK14531 adenylate kinase; Provisional
Probab=22.75 E-value=36 Score=33.47 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=12.8
Q ss_pred EEEEecccCCCCeee
Q psy2748 105 LLLTYGVTGSGKTYT 119 (690)
Q Consensus 105 ~IfaYGqTGSGKTyT 119 (690)
-|+.+|..|||||..
T Consensus 4 ~i~i~G~pGsGKsT~ 18 (183)
T PRK14531 4 RLLFLGPPGAGKGTQ 18 (183)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999865
No 329
>PTZ00014 myosin-A; Provisional
Probab=22.70 E-value=73 Score=39.28 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.4
Q ss_pred ccCCeEEEEecccCCCCeeec
Q psy2748 100 HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+.|-+|+.-|.+|||||.+.
T Consensus 180 ~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 180 VKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 688999999999999999876
No 330
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=22.69 E-value=44 Score=38.50 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=16.5
Q ss_pred CeEEEEecccCCCCeeecCC
Q psy2748 103 NGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~G 122 (690)
.-.++-.|++|||||+.|-+
T Consensus 32 GEiv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 32 SSLLFLCGSSGDGKSEILAE 51 (504)
T ss_pred CCEEEEECCCCCCHHHHHhc
Confidence 45678899999999998863
No 331
>PRK00300 gmk guanylate kinase; Provisional
Probab=22.65 E-value=34 Score=33.89 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=14.5
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
...|.-.|++|||||..+
T Consensus 5 g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456888999999998644
No 332
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=22.65 E-value=24 Score=36.15 Aligned_cols=13 Identities=31% Similarity=0.348 Sum_probs=11.1
Q ss_pred EecccCCCCeeec
Q psy2748 108 TYGVTGSGKTYTM 120 (690)
Q Consensus 108 aYGqTGSGKTyTm 120 (690)
--|.+|||||+++
T Consensus 4 I~G~sGSGKTTla 16 (220)
T cd02025 4 IAGSVAVGKSTTA 16 (220)
T ss_pred eeCCCCCCHHHHH
Confidence 3499999999887
No 333
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=22.64 E-value=38 Score=31.58 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=16.8
Q ss_pred hccCCeEEEEecccCCCCeeec
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+...+.-|+-+|..||||++..
T Consensus 17 ~a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 17 LAKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HHCSSS-EEEECCTTSSHHHHH
T ss_pred HhCCCCcEEEEcCCCCCHHHHH
Confidence 3467778899999999997654
No 334
>KOG0990|consensus
Probab=22.62 E-value=87 Score=34.30 Aligned_cols=62 Identities=29% Similarity=0.426 Sum_probs=38.1
Q ss_pred EEEEecccCCCCeeecCCC-------------------CCCCCh-HHHHHHHHHHHhcccCCCCc--cccCCCCCcceeh
Q psy2748 105 LLLTYGVTGSGKTYTMNGT-------------------NSDGGI-MMRCIDVLFNSIGRYQPRKR--TFRPDKLNGFEVQ 162 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm~G~-------------------~~~~GI-iPR~l~~LF~~i~~~~~~~~--~~~p~~~~~~~i~ 162 (690)
-++-||+.|.|||-||.-. .+++|| ++|-=..+|+.....+.-.- .|| +.|.
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fK------lvIL 137 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFK------LVIL 137 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCcee------EEEe
Confidence 4678999999999998531 134565 34555678887765332221 222 3456
Q ss_pred hHHHHHHHHH
Q psy2748 163 SQVDILLQEQ 172 (690)
Q Consensus 163 ~e~~~ll~~~ 172 (690)
.|+|++-...
T Consensus 138 DEADaMT~~A 147 (360)
T KOG0990|consen 138 DEADAMTRDA 147 (360)
T ss_pred cchhHhhHHH
Confidence 7777764333
No 335
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=22.55 E-value=5.7e+02 Score=25.93 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2748 436 KATKSKLSQKFQSKMQAQAETYE 458 (690)
Q Consensus 436 ~~~k~~le~~~~~kl~~~~ek~e 458 (690)
..++..|..+++..+.+.+++..
T Consensus 120 e~ErdeL~~kf~~~i~evqQk~~ 142 (201)
T PF13851_consen 120 EQERDELYRKFESAIQEVQQKTG 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888888877
No 336
>KOG0579|consensus
Probab=22.40 E-value=5.4e+02 Score=31.13 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=5.7
Q ss_pred HHHHHHHHH
Q psy2748 459 SKLRHNEKK 467 (690)
Q Consensus 459 ~kl~~~eek 467 (690)
+-||+++|+
T Consensus 971 aaiWElEe~ 979 (1187)
T KOG0579|consen 971 AAIWELEEK 979 (1187)
T ss_pred HHHhHhHHH
Confidence 556666666
No 337
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=22.34 E-value=51 Score=41.03 Aligned_cols=35 Identities=29% Similarity=0.589 Sum_probs=22.8
Q ss_pred CCeEEEEecccCCCCe-------eecCCCCCCCChHHHHHHHHH
Q psy2748 102 KNGLLLTYGVTGSGKT-------YTMNGTNSDGGIMMRCIDVLF 138 (690)
Q Consensus 102 ~N~~IfaYGqTGSGKT-------yTm~G~~~~~GIiPR~l~~LF 138 (690)
..++.+-+|+|||||| |.+||...-.| ....+++.
T Consensus 24 ~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~--~~~~~~~i 65 (908)
T COG0419 24 DSGIFLIVGPNGAGKSSILDAITFALYGKTPRLG--AFSLDDLI 65 (908)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc--chhhhHHH
Confidence 4456678999999996 55677665444 34444444
No 338
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=22.32 E-value=75 Score=35.94 Aligned_cols=17 Identities=47% Similarity=0.561 Sum_probs=14.5
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
+.|+-+|+||+|||+..
T Consensus 109 ~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 109 SNILLIGPTGSGKTLLA 125 (412)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 56889999999998755
No 339
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=22.30 E-value=64 Score=34.85 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=22.9
Q ss_pred ChHHHHHHhhHHHHHHHhccC-CeEEEEecccCCCCeeec
Q psy2748 82 GQKQVYSEVAHPLVANLIHAK-NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 82 sQ~evF~~v~~plV~~~l~G~-N~~IfaYGqTGSGKTyTm 120 (690)
.|+++.+.+ ...+-.|. ...++-||+.|+|||.+.
T Consensus 18 g~~~~~~~l----~~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 18 GQEHIVQTL----KNAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CcHHHHHHH----HHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 455555543 33334454 446789999999999766
No 340
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=22.23 E-value=34 Score=32.57 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=12.1
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
|+..|..|||||+..
T Consensus 2 i~i~G~~GsGKSTla 16 (149)
T cd02027 2 IWLTGLSGSGKSTIA 16 (149)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999997643
No 341
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=22.20 E-value=32 Score=31.01 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=13.0
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
-|..+|.+|||||..|
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999754
No 342
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=22.17 E-value=69 Score=38.91 Aligned_cols=38 Identities=26% Similarity=0.332 Sum_probs=0.0
Q ss_pred ChHHHHHHhhHHHHHHHh-----ccCCeEEEEecccCCCCeee
Q psy2748 82 GQKQVYSEVAHPLVANLI-----HAKNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 82 sQ~evF~~v~~plV~~~l-----~G~N~~IfaYGqTGSGKTyT 119 (690)
.|.+.-+.++..+...-. +.-.+.++-+|+||+|||++
T Consensus 458 GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~l 500 (731)
T TIGR02639 458 GQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTEL 500 (731)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHH
No 343
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=22.08 E-value=33 Score=42.31 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.0
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
|.-.+..|.||||||++|.
T Consensus 449 N~N~~I~G~sGsGKS~l~k 467 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLIQ 467 (844)
T ss_pred cccEEEEcCCCCCHHHHHH
Confidence 4557889999999999983
No 344
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=21.85 E-value=38 Score=35.00 Aligned_cols=16 Identities=44% Similarity=0.576 Sum_probs=12.1
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.+.-+|+||+|||..-
T Consensus 3 v~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEEE-STTSSHHHHH
T ss_pred EEEEECCCCCChhHHH
Confidence 4667999999998754
No 345
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=21.84 E-value=28 Score=43.06 Aligned_cols=18 Identities=33% Similarity=0.626 Sum_probs=15.9
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
++-.+..|+||||||+.|
T Consensus 488 ~gh~~I~G~tGsGKS~l~ 505 (852)
T PRK13891 488 LGHTFMFGPTGAGKSTHL 505 (852)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 566799999999999987
No 346
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=21.84 E-value=58 Score=34.14 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=14.2
Q ss_pred CeEEEEecccCCCCee
Q psy2748 103 NGLLLTYGVTGSGKTY 118 (690)
Q Consensus 103 N~~IfaYGqTGSGKTy 118 (690)
..+++-+|.+|+|||.
T Consensus 36 gs~~lI~G~pGtGKT~ 51 (259)
T TIGR03878 36 YSVINITGVSDTGKSL 51 (259)
T ss_pred CcEEEEEcCCCCCHHH
Confidence 6788899999999975
No 347
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=21.68 E-value=80 Score=39.14 Aligned_cols=17 Identities=47% Similarity=0.692 Sum_probs=15.0
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
+.++-+|+||+|||+..
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57889999999999876
No 348
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=21.64 E-value=50 Score=37.76 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=25.2
Q ss_pred EecEEeCCCCChHHHHHHhhHHHHHHHhccCC-eEEEEecccCCCCeeec
Q psy2748 72 VFKKIFNVDVGQKQVYSEVAHPLVANLIHAKN-GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 72 ~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N-~~IfaYGqTGSGKTyTm 120 (690)
+|+.|+|. +.+- ..|...+-.|.- ..++-||+.|+|||.+.
T Consensus 15 ~~~diiGq----~~~v----~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 15 TFSEILGQ----DAVV----AVLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred CHHHhcCc----HHHH----HHHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 56777753 3332 233344445543 34566999999999766
No 349
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.61 E-value=37 Score=39.68 Aligned_cols=18 Identities=44% Similarity=0.698 Sum_probs=14.8
Q ss_pred eEEEEecccCCCCeeecC
Q psy2748 104 GLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~ 121 (690)
..|.-.|++|+|||+|+.
T Consensus 351 ~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIA 368 (559)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 456666999999999984
No 350
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=21.52 E-value=52 Score=35.78 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=26.5
Q ss_pred ecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeee
Q psy2748 73 FKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 73 Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyT 119 (690)
|+.+.|.+..-..+.+.+. .+ ...+.-|+-+|.+||||++.
T Consensus 5 ~~~liG~S~~~~~~~~~i~-----~~-a~~~~pVlI~GE~GtGK~~l 45 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVS-----RL-APLDKPVLIIGERGTGKELI 45 (326)
T ss_pred cCccEECCHHHHHHHHHHH-----HH-hCCCCCEEEECCCCCcHHHH
Confidence 5566666555555555442 22 34567788899999999754
No 351
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=21.29 E-value=42 Score=41.05 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=22.1
Q ss_pred ChHHHHHHhhHHHHHHHhcc--CCeEEEEecccCCCCeeec
Q psy2748 82 GQKQVYSEVAHPLVANLIHA--KNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 82 sQ~evF~~v~~plV~~~l~G--~N~~IfaYGqTGSGKTyTm 120 (690)
.|+++-+.+..-+....+.| ....++-||++|+|||+..
T Consensus 324 G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 324 GLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred ChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHH
Confidence 35555555543222222222 1224777999999998765
No 352
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=21.26 E-value=64 Score=32.64 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=18.9
Q ss_pred HHHHHhc-c--CCeEEEEecccCCCCeee
Q psy2748 94 LVANLIH-A--KNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 94 lV~~~l~-G--~N~~IfaYGqTGSGKTyT 119 (690)
-++.++. | ....++-+|.+|+|||.-
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~ 32 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTF 32 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence 3566664 4 366777799999999863
No 353
>PRK00254 ski2-like helicase; Provisional
Probab=21.21 E-value=54 Score=39.68 Aligned_cols=21 Identities=33% Similarity=0.270 Sum_probs=16.1
Q ss_pred HhccCCeEEEEecccCCCCeeec
Q psy2748 98 LIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 98 ~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
++.|.|. +...+||||||...
T Consensus 36 ~~~g~nv--lv~apTGsGKT~~~ 56 (720)
T PRK00254 36 VLEGKNL--VLAIPTASGKTLVA 56 (720)
T ss_pred HhCCCcE--EEECCCCcHHHHHH
Confidence 5788875 45569999999765
No 354
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=21.00 E-value=42 Score=40.04 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=17.6
Q ss_pred CCeEEEEecccCCCCeeecCC
Q psy2748 102 KNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 102 ~N~~IfaYGqTGSGKTyTm~G 122 (690)
..+-++..|..|||||.||..
T Consensus 13 ~~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 13 VTGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCCCEEEEecCCCCHHHHHHH
Confidence 456788999999999999964
No 355
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=21.00 E-value=39 Score=34.29 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=13.6
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.+.-.|+.|||||.+|
T Consensus 27 i~~ivGpNGaGKSTll 42 (212)
T cd03274 27 FSAIVGPNGSGKSNVI 42 (212)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4557899999999887
No 356
>KOG0729|consensus
Probab=20.94 E-value=48 Score=35.37 Aligned_cols=15 Identities=47% Similarity=0.727 Sum_probs=12.8
Q ss_pred EEEEecccCCCCeee
Q psy2748 105 LLLTYGVTGSGKTYT 119 (690)
Q Consensus 105 ~IfaYGqTGSGKTyT 119 (690)
-|+.||+.|+|||..
T Consensus 213 gvllygppgtgktl~ 227 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLC 227 (435)
T ss_pred ceEEeCCCCCchhHH
Confidence 478999999999854
No 357
>KOG0651|consensus
Probab=20.91 E-value=24 Score=38.41 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=39.5
Q ss_pred CcceEEEecEEeCCCCChHHHHHHhhHHHHHHHhc---cCC--eEEEEecccCCCCeee
Q psy2748 66 NKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIH---AKN--GLLLTYGVTGSGKTYT 119 (690)
Q Consensus 66 ~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~---G~N--~~IfaYGqTGSGKTyT 119 (690)
.....|+|++|-|-.-.-.++-+.+..||+...|- |.. --+.-||+.|+|||+-
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTll 182 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLL 182 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHH
Confidence 34567899999887766667777778888877652 332 2357899999999873
No 358
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=20.81 E-value=33 Score=42.68 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=14.4
Q ss_pred cCCeEEEEecccCCCCeeecCC
Q psy2748 101 AKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 101 G~N~~IfaYGqTGSGKTyTm~G 122 (690)
.++.+.|.. .|||||||||.+
T Consensus 58 ~~~n~~~~M-~TGtGKT~~~~~ 78 (986)
T PRK15483 58 DKANIDIKM-ETGTGKTYVYTR 78 (986)
T ss_pred ccceEEEEe-CCCCCHHHHHHH
Confidence 334444444 699999998876
No 359
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=20.76 E-value=30 Score=42.58 Aligned_cols=19 Identities=42% Similarity=0.639 Sum_probs=16.3
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
++-.+..|+||||||..|.
T Consensus 456 ~g~~~i~G~tGsGKS~l~~ 474 (818)
T PRK13830 456 VGHTLIFGPTGSGKSTLLA 474 (818)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5668999999999998873
No 360
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=20.71 E-value=47 Score=36.03 Aligned_cols=16 Identities=44% Similarity=0.499 Sum_probs=13.9
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.|+-+|+|+||||...
T Consensus 5 ~i~I~GPTAsGKT~la 20 (308)
T COG0324 5 LIVIAGPTASGKTALA 20 (308)
T ss_pred EEEEECCCCcCHHHHH
Confidence 6889999999998764
No 361
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=20.68 E-value=46 Score=39.82 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=15.2
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
+.-++++|.||||||..+
T Consensus 224 ~~H~Lv~ApTgsGKt~g~ 241 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSV 241 (641)
T ss_pred CceEEEEeCCCCCccceE
Confidence 346789999999999975
No 362
>PRK14532 adenylate kinase; Provisional
Probab=20.52 E-value=46 Score=32.58 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=12.6
Q ss_pred EEEEecccCCCCeee
Q psy2748 105 LLLTYGVTGSGKTYT 119 (690)
Q Consensus 105 ~IfaYGqTGSGKTyT 119 (690)
.||..|..|||||..
T Consensus 2 ~i~~~G~pGsGKsT~ 16 (188)
T PRK14532 2 NLILFGPPAAGKGTQ 16 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999764
No 363
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=20.48 E-value=40 Score=35.83 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=15.5
Q ss_pred eEEEEecccCCCCeeecC
Q psy2748 104 GLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~ 121 (690)
-.+.-+|++|+|||.++.
T Consensus 76 ~~i~~~G~~g~GKTtl~~ 93 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLA 93 (270)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 578889999999998874
No 364
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=20.47 E-value=47 Score=35.99 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=13.3
Q ss_pred eEEEEecccCCCCeee
Q psy2748 104 GLLLTYGVTGSGKTYT 119 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyT 119 (690)
-.|+..|+||||||.-
T Consensus 5 ~~i~i~GptgsGKt~l 20 (307)
T PRK00091 5 KVIVIVGPTASGKTAL 20 (307)
T ss_pred eEEEEECCCCcCHHHH
Confidence 3688999999999753
No 365
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=20.34 E-value=62 Score=38.94 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=17.1
Q ss_pred cCCeEEEEecccCCCCeeec
Q psy2748 101 AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 101 G~N~~IfaYGqTGSGKTyTm 120 (690)
+-+.-++++|.||||||..+
T Consensus 137 ~~~~hvlviApTgSGKgvg~ 156 (670)
T PRK13850 137 GEQPHSLVVAPTRAGKGVGV 156 (670)
T ss_pred CCCceEEEEecCCCCceeee
Confidence 44667899999999999888
No 366
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=20.33 E-value=54 Score=37.96 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=30.4
Q ss_pred EecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 72 VFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 72 ~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.|+.+.+.+..=+.+++.+.. +...+..|+-+|.+|+||++.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~------~a~~~~pVlI~Ge~GtGK~~~A 227 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV------VAASDLNVLILGETGVGKELVA 227 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH------HhCCCCcEEEECCCCccHHHHH
Confidence 677777766555555555422 4566889999999999997543
No 367
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=20.31 E-value=40 Score=34.99 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=13.2
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.+.-.|++|||||.-|
T Consensus 33 ~vaI~GpSGSGKSTLL 48 (226)
T COG1136 33 FVAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4577899999998765
No 368
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=20.31 E-value=44 Score=33.48 Aligned_cols=17 Identities=35% Similarity=0.304 Sum_probs=13.5
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
..|.-.|.+|||||+.+
T Consensus 7 ~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45678899999999643
No 369
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=20.25 E-value=57 Score=39.76 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=19.5
Q ss_pred HHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
|..++.+ +..++-.|..|+||||+|-
T Consensus 361 v~~i~~s-~~~~il~G~aGTGKTtll~ 386 (744)
T TIGR02768 361 VRHVTGS-GDIAVVVGRAGTGKSTMLK 386 (744)
T ss_pred HHHHhcC-CCEEEEEecCCCCHHHHHH
Confidence 3444544 4577899999999999985
No 370
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=20.24 E-value=41 Score=38.02 Aligned_cols=17 Identities=47% Similarity=0.561 Sum_probs=14.9
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
+.|+-+|+||+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57899999999999765
No 371
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=20.14 E-value=53 Score=39.84 Aligned_cols=15 Identities=40% Similarity=0.731 Sum_probs=12.6
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
|+-||+.|+|||+..
T Consensus 490 iLL~GppGtGKT~la 504 (733)
T TIGR01243 490 VLLFGPPGTGKTLLA 504 (733)
T ss_pred EEEECCCCCCHHHHH
Confidence 566999999998765
No 372
>CHL00195 ycf46 Ycf46; Provisional
Probab=20.10 E-value=39 Score=39.09 Aligned_cols=17 Identities=41% Similarity=0.610 Sum_probs=14.5
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 45889999999999765
No 373
>PRK14527 adenylate kinase; Provisional
Probab=20.09 E-value=47 Score=32.80 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=14.2
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
-.|+.+|..|||||...
T Consensus 7 ~~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQA 23 (191)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999997654
No 374
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=20.08 E-value=43 Score=33.79 Aligned_cols=18 Identities=50% Similarity=0.850 Sum_probs=14.8
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
+..+.-.|++|||||..|
T Consensus 28 ~~~~~i~G~NGsGKSTll 45 (213)
T cd03279 28 NGLFLICGPTGAGKSTIL 45 (213)
T ss_pred cCEEEEECCCCCCHHHHH
Confidence 446678999999999876
No 375
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=20.06 E-value=66 Score=37.12 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=21.8
Q ss_pred HHHHHHHhcc---CCeEEEEecccCCCCeee
Q psy2748 92 HPLVANLIHA---KNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 92 ~plV~~~l~G---~N~~IfaYGqTGSGKTyT 119 (690)
-+-++.++.| ...+++-+|.+|||||.-
T Consensus 17 I~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l 47 (509)
T PRK09302 17 IEGFDDITHGGLPKGRPTLVSGTAGTGKTLF 47 (509)
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCHHHH
Confidence 4456777765 478899999999999753
No 376
>KOG1547|consensus
Probab=20.01 E-value=1.2e+02 Score=32.04 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=18.6
Q ss_pred hccCCeEEEEecccCCCCeee
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyT 119 (690)
-.|+.--||..||+|.|||.-
T Consensus 42 k~GF~FNIMVVgqSglgkstl 62 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTL 62 (336)
T ss_pred hccCceEEEEEecCCCCchhh
Confidence 479999999999999999753
No 377
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=20.00 E-value=45 Score=35.27 Aligned_cols=17 Identities=47% Similarity=0.667 Sum_probs=13.9
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
-+|+..|..|||||+--
T Consensus 3 ~liil~G~pGSGKSTla 19 (300)
T PHA02530 3 KIILTVGVPGSGKSTWA 19 (300)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 36888999999998653
Done!