Query psy2748
Match_columns 690
No_of_seqs 316 out of 1747
Neff 6.5
Searched_HMMs 29240
Date Sat Aug 17 00:11:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bfn_A Kinesin-like protein KI 100.0 9.8E-69 3.3E-73 582.2 20.3 270 18-370 16-358 (388)
2 2vvg_A Kinesin-2; motor protei 100.0 4.1E-68 1.4E-72 572.1 22.5 269 21-370 2-346 (350)
3 3nwn_A Kinesin-like protein KI 100.0 8.9E-68 3E-72 571.2 21.9 267 17-359 18-359 (359)
4 1goj_A Kinesin, kinesin heavy 100.0 4.4E-67 1.5E-71 565.4 26.2 263 20-370 3-341 (355)
5 3b6u_A Kinesin-like protein KI 100.0 3.8E-67 1.3E-71 567.9 24.1 270 17-369 15-363 (372)
6 3cob_A Kinesin heavy chain-lik 100.0 1.4E-67 4.9E-72 571.1 19.5 263 20-368 2-336 (369)
7 1t5c_A CENP-E protein, centrom 100.0 1.5E-66 5.3E-71 560.0 25.9 263 21-373 2-342 (349)
8 3lre_A Kinesin-like protein KI 100.0 5.5E-67 1.9E-71 565.0 20.6 264 18-359 5-355 (355)
9 2wbe_C Bipolar kinesin KRP-130 100.0 7.7E-67 2.6E-71 566.9 21.6 264 18-368 18-370 (373)
10 2zfi_A Kinesin-like protein KI 100.0 8.7E-67 3E-71 565.6 21.8 268 22-367 3-362 (366)
11 1bg2_A Kinesin; motor protein, 100.0 1.9E-66 6.5E-71 554.7 22.8 247 20-359 4-325 (325)
12 2y65_A Kinesin, kinesin heavy 100.0 1.3E-66 4.3E-71 563.4 21.7 259 19-369 7-343 (365)
13 2owm_A Nckin3-434, related to 100.0 2.2E-66 7.6E-71 573.9 23.8 281 18-367 33-421 (443)
14 1x88_A Kinesin-like protein KI 100.0 2.2E-66 7.5E-71 561.1 21.8 266 19-367 4-358 (359)
15 2h58_A Kinesin-like protein KI 100.0 9.2E-66 3.1E-70 550.4 19.8 254 20-360 1-329 (330)
16 3gbj_A KIF13B protein; kinesin 100.0 5.1E-66 1.7E-70 557.3 17.8 264 24-359 2-350 (354)
17 4a14_A Kinesin, kinesin-like p 100.0 3E-65 1E-69 549.9 22.4 251 19-357 7-344 (344)
18 2nr8_A Kinesin-like protein KI 100.0 2.8E-65 9.5E-70 551.6 21.9 265 18-359 18-358 (358)
19 2heh_A KIF2C protein; kinesin, 100.0 1.3E-65 4.3E-70 557.6 18.9 262 21-362 49-385 (387)
20 3u06_A Protein claret segregat 100.0 5.5E-66 1.9E-70 566.0 16.1 274 11-364 47-387 (412)
21 2rep_A Kinesin-like protein KI 100.0 4.1E-65 1.4E-69 553.1 22.0 272 13-359 12-376 (376)
22 1ry6_A Internal kinesin; kines 100.0 7.4E-66 2.5E-70 556.4 15.2 263 24-367 1-339 (360)
23 1v8k_A Kinesin-like protein KI 100.0 3.5E-65 1.2E-69 557.4 16.2 263 21-363 69-406 (410)
24 1f9v_A Kinesin-like protein KA 100.0 1.6E-64 5.5E-69 544.2 18.5 266 22-363 2-345 (347)
25 3t0q_A AGR253WP; kinesin, alph 100.0 4.5E-64 1.5E-68 541.5 20.6 268 20-363 2-348 (349)
26 4etp_A Kinesin-like protein KA 100.0 2.4E-64 8.3E-69 552.8 18.5 277 11-363 47-401 (403)
27 3dc4_A Kinesin-like protein NO 100.0 3.1E-62 1.1E-66 525.3 19.7 247 17-360 16-336 (344)
28 4h1g_A Maltose binding protein 100.0 1.4E-58 4.8E-63 542.9 18.7 260 19-361 370-713 (715)
29 3vhx_B Kinesin-like protein KI 100.0 9.7E-54 3.3E-58 379.1 7.7 108 532-657 10-117 (120)
30 2kin_B Kinesin; motor protein, 99.9 3.3E-28 1.1E-32 215.4 5.2 86 280-369 1-86 (100)
31 3kin_B Kinesin heavy chain; mo 99.9 4.9E-26 1.7E-30 207.9 9.4 82 284-369 1-82 (117)
32 2o0a_A S.cerevisiae chromosome 99.9 4E-25 1.4E-29 226.6 8.2 241 11-363 12-293 (298)
33 3ec2_A DNA replication protein 92.4 0.023 7.9E-07 53.9 -0.0 50 71-121 7-56 (180)
34 2w58_A DNAI, primosome compone 89.9 0.07 2.4E-06 51.3 0.5 50 70-120 21-71 (202)
35 2qgz_A Helicase loader, putati 88.4 0.11 3.7E-06 54.4 0.7 50 71-121 121-170 (308)
36 3t15_A Ribulose bisphosphate c 83.1 0.43 1.5E-05 49.2 2.0 48 73-120 2-53 (293)
37 1jbk_A CLPB protein; beta barr 82.4 0.61 2.1E-05 43.0 2.6 28 93-120 33-60 (195)
38 2bjv_A PSP operon transcriptio 80.7 0.57 1.9E-05 47.0 1.8 45 70-120 2-46 (265)
39 2p65_A Hypothetical protein PF 80.6 0.68 2.3E-05 42.8 2.2 28 93-120 33-60 (187)
40 3te6_A Regulatory protein SIR3 80.1 0.55 1.9E-05 49.5 1.5 34 87-120 29-62 (318)
41 2r62_A Cell division protease 76.9 0.59 2E-05 46.8 0.6 50 70-120 7-61 (268)
42 3h4m_A Proteasome-activating n 74.3 0.72 2.5E-05 46.5 0.4 51 70-120 13-68 (285)
43 3cf0_A Transitional endoplasmi 73.4 0.86 3E-05 47.0 0.7 51 70-120 11-66 (301)
44 1g8p_A Magnesium-chelatase 38 73.1 0.85 2.9E-05 47.3 0.6 43 70-120 20-62 (350)
45 1vec_A ATP-dependent RNA helic 73.0 1.5 5.2E-05 41.7 2.3 24 95-120 34-57 (206)
46 1qde_A EIF4A, translation init 72.7 1.4 4.7E-05 42.7 2.0 25 94-120 44-68 (224)
47 2gxq_A Heat resistant RNA depe 71.6 1.5 5.3E-05 41.6 2.0 24 95-120 32-55 (207)
48 1ixz_A ATP-dependent metallopr 71.6 0.57 2E-05 46.6 -1.1 50 70-120 12-66 (254)
49 1p9r_A General secretion pathw 71.1 1.7 5.7E-05 47.5 2.3 28 93-120 157-184 (418)
50 3uk6_A RUVB-like 2; hexameric 70.9 1.9 6.5E-05 45.1 2.7 46 70-120 40-87 (368)
51 1iy2_A ATP-dependent metallopr 70.4 0.79 2.7E-05 46.5 -0.4 50 70-120 36-90 (278)
52 2chg_A Replication factor C sm 70.1 1.9 6.4E-05 40.7 2.3 21 100-120 35-55 (226)
53 1l8q_A Chromosomal replication 70.0 1.3 4.5E-05 45.8 1.2 49 70-121 7-55 (324)
54 1d2n_A N-ethylmaleimide-sensit 69.1 2.4 8.1E-05 42.6 2.9 21 100-120 61-81 (272)
55 3jvv_A Twitching mobility prot 69.1 1.8 6.2E-05 46.1 2.1 27 94-120 114-140 (356)
56 3dkp_A Probable ATP-dependent 68.5 1.9 6.7E-05 42.3 2.0 25 94-120 59-83 (245)
57 3bor_A Human initiation factor 67.9 1.3 4.4E-05 43.6 0.6 25 94-120 60-84 (237)
58 2v1u_A Cell division control p 67.2 0.84 2.9E-05 47.7 -1.0 45 75-120 16-61 (387)
59 3bos_A Putative DNA replicatio 66.3 2.7 9.3E-05 40.4 2.5 44 71-120 25-69 (242)
60 3d8b_A Fidgetin-like protein 1 66.2 1.1 3.6E-05 47.6 -0.5 51 70-120 80-134 (357)
61 1fnn_A CDC6P, cell division co 65.9 3.5 0.00012 43.1 3.4 40 80-120 19-61 (389)
62 3b9p_A CG5977-PA, isoform A; A 65.8 1.2 4.1E-05 45.3 -0.2 51 70-120 17-71 (297)
63 2pl3_A Probable ATP-dependent 65.7 2.4 8.2E-05 41.4 2.0 25 94-120 55-79 (236)
64 2kjq_A DNAA-related protein; s 65.2 1.9 6.6E-05 39.7 1.2 17 104-120 37-53 (149)
65 3b6e_A Interferon-induced heli 64.8 1.3 4.6E-05 42.1 -0.0 22 97-120 44-65 (216)
66 1t6n_A Probable ATP-dependent 64.7 2.5 8.5E-05 40.7 1.9 25 94-120 44-68 (220)
67 3ly5_A ATP-dependent RNA helic 63.8 2.1 7.2E-05 43.0 1.2 25 94-120 84-108 (262)
68 1wrb_A DJVLGB; RNA helicase, D 63.1 2.7 9.2E-05 41.6 1.8 24 95-120 54-77 (253)
69 3iuy_A Probable ATP-dependent 62.6 2.9 0.0001 40.5 2.0 24 95-120 51-74 (228)
70 2z4s_A Chromosomal replication 62.2 2.4 8.4E-05 46.3 1.4 48 70-121 101-148 (440)
71 1xwi_A SKD1 protein; VPS4B, AA 62.1 1.6 5.4E-05 45.6 -0.1 50 71-120 9-62 (322)
72 3eiq_A Eukaryotic initiation f 62.0 3.1 0.00011 43.8 2.2 25 94-120 70-94 (414)
73 2x8a_A Nuclear valosin-contain 61.4 1.5 5.3E-05 44.6 -0.3 50 71-120 7-61 (274)
74 3ber_A Probable ATP-dependent 61.0 3.1 0.00011 41.4 1.9 25 94-120 73-97 (249)
75 2c9o_A RUVB-like 1; hexameric 60.9 4.1 0.00014 44.5 3.0 46 70-120 33-80 (456)
76 3fe2_A Probable ATP-dependent 60.9 3.1 0.00011 40.9 1.8 24 95-120 60-83 (242)
77 3syl_A Protein CBBX; photosynt 60.5 2.9 0.0001 42.4 1.6 18 103-120 67-84 (309)
78 3llm_A ATP-dependent RNA helic 60.3 3.3 0.00011 40.7 1.9 25 94-120 69-93 (235)
79 2eyu_A Twitching motility prot 60.1 3 0.0001 42.3 1.5 20 101-120 23-42 (261)
80 2oxc_A Probable ATP-dependent 60.1 3.4 0.00012 40.2 2.0 24 95-120 55-78 (230)
81 2qby_B CDC6 homolog 3, cell di 59.0 4 0.00014 42.6 2.3 40 80-120 22-62 (384)
82 2qz4_A Paraplegin; AAA+, SPG7, 58.9 5.6 0.00019 39.1 3.3 18 103-120 39-56 (262)
83 3fmo_B ATP-dependent RNA helic 58.9 3.4 0.00011 42.6 1.7 27 94-120 122-148 (300)
84 3co5_A Putative two-component 58.5 4.9 0.00017 36.3 2.6 19 103-121 27-45 (143)
85 1q0u_A Bstdead; DEAD protein, 57.3 2.7 9.2E-05 40.6 0.6 24 95-120 35-58 (219)
86 4b4t_K 26S protease regulatory 56.7 3.7 0.00013 44.9 1.7 73 71-143 169-263 (428)
87 4b4t_M 26S protease regulatory 56.2 3.1 0.00011 45.6 0.9 51 70-120 177-232 (434)
88 4etp_B Spindle POLE BODY-assoc 56.0 34 0.0012 35.7 8.5 81 17-112 53-137 (333)
89 1njg_A DNA polymerase III subu 55.7 5.3 0.00018 37.8 2.5 17 104-120 46-62 (250)
90 1tue_A Replication protein E1; 55.2 3.6 0.00012 40.7 1.1 28 94-121 47-76 (212)
91 2j0s_A ATP-dependent RNA helic 54.9 4.4 0.00015 42.7 1.8 25 94-120 67-91 (410)
92 1rif_A DAR protein, DNA helica 53.9 3.7 0.00012 41.5 1.0 22 97-120 124-145 (282)
93 3pfi_A Holliday junction ATP-d 53.9 6 0.0002 40.8 2.7 44 72-120 27-72 (338)
94 3h1t_A Type I site-specific re 53.8 5.7 0.00019 44.6 2.6 26 95-121 191-216 (590)
95 3eie_A Vacuolar protein sortin 53.5 2.1 7.3E-05 44.4 -0.9 50 71-120 15-68 (322)
96 1f5n_A Interferon-induced guan 53.4 56 0.0019 37.1 10.7 21 100-120 35-55 (592)
97 1lv7_A FTSH; alpha/beta domain 53.3 6.7 0.00023 38.8 2.8 46 70-120 8-62 (257)
98 1s2m_A Putative ATP-dependent 53.2 4.8 0.00016 42.2 1.8 24 95-120 52-75 (400)
99 3vfd_A Spastin; ATPase, microt 53.2 2.2 7.7E-05 45.4 -0.8 51 70-120 111-165 (389)
100 1sxj_C Activator 1 40 kDa subu 53.1 5.6 0.00019 41.3 2.3 42 72-121 23-64 (340)
101 3fht_A ATP-dependent RNA helic 53.1 5 0.00017 42.1 1.9 27 94-120 55-81 (412)
102 3n70_A Transport activator; si 52.8 5.2 0.00018 36.2 1.7 20 101-120 22-41 (145)
103 3pey_A ATP-dependent RNA helic 52.7 4.9 0.00017 41.7 1.8 27 94-120 35-61 (395)
104 3fmp_B ATP-dependent RNA helic 52.7 6.1 0.00021 42.9 2.6 26 94-119 122-147 (479)
105 2z0m_A 337AA long hypothetical 52.6 5.1 0.00017 40.6 1.8 24 95-120 25-48 (337)
106 3pvs_A Replication-associated 52.6 4.7 0.00016 44.2 1.6 40 80-120 28-67 (447)
107 2fz4_A DNA repair protein RAD2 52.5 4.7 0.00016 39.9 1.5 22 97-120 104-125 (237)
108 1gvn_B Zeta; postsegregational 52.5 11 0.00038 38.5 4.4 32 89-120 14-50 (287)
109 1u0j_A DNA replication protein 52.0 6.8 0.00023 40.1 2.6 29 92-120 90-121 (267)
110 1hqc_A RUVB; extended AAA-ATPa 51.8 7.3 0.00025 39.7 2.9 44 72-120 10-55 (324)
111 4fcw_A Chaperone protein CLPB; 51.7 5.6 0.00019 40.3 2.0 38 82-120 21-64 (311)
112 2qby_A CDC6 homolog 1, cell di 51.4 2.5 8.5E-05 43.9 -0.8 20 101-120 43-62 (386)
113 1in4_A RUVB, holliday junction 51.0 7.1 0.00024 40.7 2.7 44 72-120 23-68 (334)
114 2ewv_A Twitching motility prot 50.9 3.9 0.00013 43.7 0.7 27 94-120 127-153 (372)
115 1iqp_A RFCS; clamp loader, ext 50.6 7 0.00024 39.6 2.5 36 81-120 28-63 (327)
116 1ofh_A ATP-dependent HSL prote 50.0 6.6 0.00022 39.5 2.2 18 103-120 50-67 (310)
117 2oap_1 GSPE-2, type II secreti 49.6 6.7 0.00023 43.8 2.3 19 100-120 259-277 (511)
118 2qp9_X Vacuolar protein sortin 49.5 3.4 0.00012 43.7 -0.1 50 71-120 48-101 (355)
119 3hu3_A Transitional endoplasmi 49.3 4.8 0.00017 44.7 1.1 19 102-120 237-255 (489)
120 1sxj_D Activator 1 41 kDa subu 48.6 4.3 0.00015 41.8 0.5 41 72-120 35-75 (353)
121 2i4i_A ATP-dependent RNA helic 48.4 6.5 0.00022 41.4 1.9 24 95-120 46-69 (417)
122 4b4t_L 26S protease subunit RP 46.8 4.7 0.00016 44.2 0.5 51 70-120 177-232 (437)
123 2zan_A Vacuolar protein sortin 46.4 3.5 0.00012 45.0 -0.6 51 70-120 130-184 (444)
124 1w5s_A Origin recognition comp 46.3 7 0.00024 41.1 1.7 25 96-120 40-69 (412)
125 2r44_A Uncharacterized protein 45.8 4.4 0.00015 41.7 0.1 34 81-120 30-63 (331)
126 3oiy_A Reverse gyrase helicase 45.5 7.5 0.00025 41.2 1.8 24 94-119 29-52 (414)
127 3fho_A ATP-dependent RNA helic 45.0 7.7 0.00026 42.9 1.9 26 95-120 150-175 (508)
128 3u61_B DNA polymerase accessor 44.7 10 0.00035 38.8 2.6 18 103-120 48-65 (324)
129 2p5t_B PEZT; postsegregational 44.4 9.1 0.00031 38.0 2.2 32 88-119 12-48 (253)
130 1xti_A Probable ATP-dependent 44.1 7.9 0.00027 40.2 1.7 25 94-120 38-62 (391)
131 3i5x_A ATP-dependent RNA helic 44.0 9.6 0.00033 42.3 2.5 26 94-119 102-127 (563)
132 1n0w_A DNA repair protein RAD5 43.4 8.4 0.00029 37.2 1.7 29 92-120 10-41 (243)
133 1c4o_A DNA nucleotide excision 42.7 10 0.00036 43.6 2.6 40 77-121 7-46 (664)
134 2chq_A Replication factor C sm 42.7 6.6 0.00023 39.6 0.8 21 100-120 35-55 (319)
135 1fuu_A Yeast initiation factor 42.3 5.8 0.0002 41.2 0.3 25 94-120 51-75 (394)
136 3upu_A ATP-dependent DNA helic 41.9 11 0.00038 41.0 2.5 36 80-120 27-62 (459)
137 4a2p_A RIG-I, retinoic acid in 41.0 10 0.00035 41.5 2.0 25 94-120 15-39 (556)
138 4b4t_J 26S protease regulatory 40.2 7.5 0.00026 42.2 0.8 50 71-120 145-199 (405)
139 4b4t_H 26S protease regulatory 40.1 6.3 0.00022 43.5 0.2 50 71-120 206-260 (467)
140 1jr3_A DNA polymerase III subu 40.0 14 0.00049 38.1 3.0 37 80-120 18-55 (373)
141 3b85_A Phosphate starvation-in 39.6 12 0.0004 36.5 2.0 26 93-120 14-39 (208)
142 3c8u_A Fructokinase; YP_612366 39.5 14 0.00048 35.3 2.6 29 92-120 9-39 (208)
143 2db3_A ATP-dependent RNA helic 39.2 13 0.00044 40.1 2.4 24 95-120 87-110 (434)
144 3vem_A Helicase protein MOM1; 39.2 1.8E+02 0.0062 25.7 9.2 24 440-463 60-83 (115)
145 2v1x_A ATP-dependent DNA helic 39.2 15 0.00051 41.7 3.1 25 94-120 52-76 (591)
146 3tbk_A RIG-I helicase domain; 38.9 11 0.00039 40.9 2.0 24 95-120 13-36 (555)
147 1hv8_A Putative ATP-dependent 38.8 11 0.00037 38.5 1.8 25 95-120 37-61 (367)
148 1rz3_A Hypothetical protein rb 38.8 16 0.00054 34.8 2.8 29 92-120 8-39 (201)
149 2w0m_A SSO2452; RECA, SSPF, un 38.6 9.8 0.00034 36.2 1.3 28 93-120 10-40 (235)
150 3pxg_A Negative regulator of g 38.3 16 0.00055 40.0 3.1 42 72-121 178-219 (468)
151 2fwr_A DNA repair protein RAD2 38.0 11 0.00037 40.8 1.6 23 96-120 103-125 (472)
152 1sxj_B Activator 1 37 kDa subu 38.0 11 0.00039 37.9 1.7 35 82-120 25-59 (323)
153 2cvh_A DNA repair and recombin 37.9 12 0.0004 35.6 1.7 28 93-120 7-37 (220)
154 4gl2_A Interferon-induced heli 37.6 11 0.00038 42.9 1.7 25 94-120 15-39 (699)
155 1w36_D RECD, exodeoxyribonucle 37.4 11 0.00039 42.7 1.8 19 103-121 164-182 (608)
156 1um8_A ATP-dependent CLP prote 36.8 14 0.00048 38.8 2.3 18 103-120 72-89 (376)
157 3sqw_A ATP-dependent RNA helic 36.2 15 0.00051 41.1 2.5 26 94-119 51-76 (579)
158 4gp7_A Metallophosphoesterase; 36.1 8.9 0.0003 35.7 0.5 18 104-121 10-27 (171)
159 4ag6_A VIRB4 ATPase, type IV s 34.8 8.6 0.00029 40.8 0.2 19 102-120 34-52 (392)
160 1ojl_A Transcriptional regulat 34.8 16 0.00056 37.4 2.3 20 101-120 23-42 (304)
161 4a74_A DNA repair and recombin 34.5 15 0.00052 34.9 1.9 28 93-120 12-42 (231)
162 3lw7_A Adenylate kinase relate 34.4 11 0.00038 33.9 0.9 15 105-119 3-17 (179)
163 3nr7_A DNA-binding protein H-N 34.4 1.1E+02 0.0036 25.8 6.8 54 425-479 15-71 (86)
164 4b4t_I 26S protease regulatory 34.1 12 0.0004 41.1 1.0 49 72-120 180-233 (437)
165 1qvr_A CLPB protein; coiled co 33.7 11 0.00036 44.8 0.7 29 94-122 182-210 (854)
166 1sxj_E Activator 1 40 kDa subu 33.1 11 0.00037 38.9 0.6 15 106-120 39-53 (354)
167 3tau_A Guanylate kinase, GMP k 33.0 12 0.0004 36.0 0.8 18 103-120 8-25 (208)
168 3hws_A ATP-dependent CLP prote 32.9 20 0.0007 37.4 2.7 18 103-120 51-68 (363)
169 2jlq_A Serine protease subunit 32.6 12 0.00039 40.8 0.7 25 95-120 12-36 (451)
170 2ykg_A Probable ATP-dependent 32.6 18 0.00062 41.1 2.4 24 95-120 22-45 (696)
171 2gza_A Type IV secretion syste 32.2 18 0.0006 38.3 2.1 20 99-120 173-192 (361)
172 3b9q_A Chloroplast SRP recepto 32.0 30 0.001 35.6 3.7 17 104-120 101-117 (302)
173 3nbx_X ATPase RAVA; AAA+ ATPas 31.9 19 0.00065 40.0 2.4 22 97-120 37-58 (500)
174 2ce7_A Cell division protein F 31.8 8.6 0.00029 42.6 -0.5 16 105-120 51-66 (476)
175 2gk6_A Regulator of nonsense t 31.7 16 0.00055 41.5 1.8 19 103-121 195-213 (624)
176 2dr3_A UPF0273 protein PH0284; 31.5 15 0.00051 35.4 1.3 26 95-120 12-40 (247)
177 3e70_C DPA, signal recognition 31.5 25 0.00087 36.7 3.1 18 103-120 129-146 (328)
178 1e9r_A Conjugal transfer prote 31.4 9.6 0.00033 41.0 -0.2 19 102-120 52-70 (437)
179 1sxj_A Activator 1 95 kDa subu 30.7 19 0.00065 39.9 2.1 17 104-120 78-94 (516)
180 1wp9_A ATP-dependent RNA helic 30.4 16 0.00056 38.4 1.5 23 95-120 18-40 (494)
181 3tr0_A Guanylate kinase, GMP k 30.3 13 0.00043 35.0 0.5 16 105-120 9-24 (205)
182 1oyw_A RECQ helicase, ATP-depe 30.0 11 0.00036 42.1 -0.1 25 94-120 33-57 (523)
183 1qvr_A CLPB protein; coiled co 29.9 29 0.001 40.9 3.7 17 104-120 589-605 (854)
184 1ly1_A Polynucleotide kinase; 29.8 14 0.0005 33.6 0.8 16 104-119 3-18 (181)
185 4b3f_X DNA-binding protein smu 29.8 18 0.00063 41.2 1.8 26 95-121 198-223 (646)
186 1kgd_A CASK, peripheral plasma 29.4 13 0.00045 34.7 0.4 16 105-120 7-22 (180)
187 3pxi_A Negative regulator of g 29.4 28 0.00095 40.4 3.3 38 82-120 495-538 (758)
188 2b8t_A Thymidine kinase; deoxy 29.4 10 0.00034 37.6 -0.4 21 102-122 11-31 (223)
189 1lkx_A Myosin IE heavy chain; 29.3 28 0.00095 40.4 3.2 22 99-120 90-111 (697)
190 2d7d_A Uvrabc system protein B 29.2 24 0.00082 40.5 2.7 46 71-121 5-50 (661)
191 3nmd_A CGMP dependent protein 29.0 1.7E+02 0.0058 23.8 6.8 23 455-478 43-65 (72)
192 1r6b_X CLPA protein; AAA+, N-t 28.5 24 0.00082 40.9 2.5 42 72-121 184-225 (758)
193 1ypw_A Transitional endoplasmi 28.3 21 0.00072 42.1 2.0 75 69-143 199-295 (806)
194 1odf_A YGR205W, hypothetical 3 28.3 29 0.001 35.5 2.9 36 85-120 11-48 (290)
195 3trf_A Shikimate kinase, SK; a 28.2 16 0.00055 33.8 0.8 15 105-119 7-21 (185)
196 3a00_A Guanylate kinase, GMP k 28.1 13 0.00045 34.8 0.2 16 105-120 3-18 (186)
197 3lfu_A DNA helicase II; SF1 he 28.1 16 0.00054 41.2 0.9 21 101-121 20-40 (647)
198 1rj9_A FTSY, signal recognitio 28.1 15 0.00052 37.9 0.7 17 104-120 103-119 (304)
199 1qhx_A CPT, protein (chloramph 28.0 16 0.00056 33.4 0.8 17 104-120 4-20 (178)
200 2oca_A DAR protein, ATP-depend 27.9 18 0.00062 39.4 1.3 34 77-120 112-145 (510)
201 1w9i_A Myosin II heavy chain; 27.7 31 0.001 40.5 3.2 22 99-120 168-189 (770)
202 1r6b_X CLPA protein; AAA+, N-t 27.6 34 0.0012 39.6 3.6 17 104-120 489-505 (758)
203 2r8r_A Sensor protein; KDPD, P 27.5 14 0.00047 36.9 0.2 19 104-122 7-25 (228)
204 3pxi_A Negative regulator of g 27.3 33 0.0011 39.8 3.5 41 72-120 178-218 (758)
205 1zp6_A Hypothetical protein AT 27.2 15 0.00051 34.1 0.4 17 104-120 10-26 (191)
206 4a2w_A RIG-I, retinoic acid in 27.2 22 0.00074 42.6 1.9 24 95-120 257-280 (936)
207 1gm5_A RECG; helicase, replica 27.1 25 0.00085 41.3 2.3 24 97-120 383-406 (780)
208 2v26_A Myosin VI; calmodulin-b 27.1 32 0.0011 40.5 3.2 22 99-120 136-157 (784)
209 4a4z_A Antiviral helicase SKI2 27.0 27 0.00093 42.2 2.7 23 95-119 48-70 (997)
210 2og2_A Putative signal recogni 26.8 42 0.0014 35.6 3.8 17 104-120 158-174 (359)
211 4a2q_A RIG-I, retinoic acid in 26.6 24 0.00081 41.3 2.0 24 95-120 257-280 (797)
212 3e1s_A Exodeoxyribonuclease V, 26.3 18 0.00062 40.8 0.9 19 103-121 204-222 (574)
213 1f2t_A RAD50 ABC-ATPase; DNA d 26.0 18 0.00062 33.0 0.7 17 104-120 24-40 (149)
214 3uie_A Adenylyl-sulfate kinase 26.0 22 0.00076 33.6 1.4 21 100-120 22-42 (200)
215 3iij_A Coilin-interacting nucl 25.9 17 0.00057 33.6 0.5 17 104-120 12-28 (180)
216 3kta_A Chromosome segregation 25.8 16 0.00056 33.7 0.4 16 105-120 28-43 (182)
217 3cf2_A TER ATPase, transitiona 25.8 35 0.0012 40.3 3.2 74 70-143 200-295 (806)
218 1g8x_A Myosin II heavy chain f 25.8 33 0.0011 41.5 3.1 22 99-120 168-189 (1010)
219 1lvg_A Guanylate kinase, GMP k 25.7 15 0.00051 35.0 0.1 16 105-120 6-21 (198)
220 2px0_A Flagellar biosynthesis 25.6 16 0.00055 37.5 0.3 18 104-121 106-123 (296)
221 1w7j_A Myosin VA; motor protei 25.5 35 0.0012 40.2 3.2 21 100-120 153-173 (795)
222 2ycu_A Non muscle myosin 2C, a 25.5 35 0.0012 41.2 3.3 22 99-120 142-163 (995)
223 2j41_A Guanylate kinase; GMP, 25.4 17 0.00059 34.0 0.5 16 105-120 8-23 (207)
224 1i84_S Smooth muscle myosin he 25.4 34 0.0012 42.1 3.2 22 99-120 165-186 (1184)
225 2orw_A Thymidine kinase; TMTK, 25.3 17 0.00057 34.5 0.3 17 105-121 5-21 (184)
226 1kk8_A Myosin heavy chain, str 25.3 33 0.0011 40.6 2.9 21 100-120 166-186 (837)
227 1ye8_A Protein THEP1, hypothet 25.1 16 0.00056 34.4 0.2 15 106-120 3-17 (178)
228 2ze6_A Isopentenyl transferase 25.0 21 0.00072 35.5 1.0 14 105-118 3-16 (253)
229 2qen_A Walker-type ATPase; unk 24.8 30 0.001 35.0 2.2 17 104-120 32-48 (350)
230 3oja_B Anopheles plasmodium-re 24.7 3.1E+02 0.011 30.2 10.8 27 333-359 391-417 (597)
231 4db1_A Myosin-7; S1DC, cardiac 24.6 38 0.0013 39.8 3.2 22 99-120 167-188 (783)
232 3lnc_A Guanylate kinase, GMP k 24.5 22 0.00074 34.4 1.0 16 105-120 29-44 (231)
233 1w4r_A Thymidine kinase; type 24.4 21 0.0007 34.8 0.8 20 99-118 16-35 (195)
234 2bdt_A BH3686; alpha-beta prot 24.4 18 0.00063 33.6 0.4 16 105-120 4-19 (189)
235 1gku_B Reverse gyrase, TOP-RG; 24.4 30 0.001 42.0 2.4 23 94-118 64-86 (1054)
236 1uaa_A REP helicase, protein ( 24.3 22 0.00074 40.7 1.1 20 102-121 14-33 (673)
237 2xzl_A ATP-dependent helicase 24.3 25 0.00085 41.4 1.6 19 103-121 375-393 (802)
238 2qag_C Septin-7; cell cycle, c 24.3 18 0.00062 39.3 0.4 23 98-120 26-48 (418)
239 2dhr_A FTSH; AAA+ protein, hex 24.2 41 0.0014 37.3 3.3 37 106-142 67-120 (499)
240 2ehv_A Hypothetical protein PH 24.2 18 0.00063 34.8 0.4 18 103-120 30-47 (251)
241 2qnr_A Septin-2, protein NEDD5 24.1 19 0.00066 36.9 0.6 23 98-120 13-35 (301)
242 2v6i_A RNA helicase; membrane, 24.1 25 0.00086 37.9 1.5 16 105-120 4-19 (431)
243 2wjy_A Regulator of nonsense t 23.9 27 0.00092 41.1 1.8 18 104-121 372-389 (800)
244 1kht_A Adenylate kinase; phosp 23.6 23 0.00078 32.6 0.9 17 104-120 4-20 (192)
245 3dm5_A SRP54, signal recogniti 23.5 41 0.0014 36.8 3.1 19 103-121 100-118 (443)
246 1j8m_F SRP54, signal recogniti 23.2 49 0.0017 33.9 3.4 17 105-121 100-116 (297)
247 1xx6_A Thymidine kinase; NESG, 23.1 14 0.00049 35.5 -0.6 19 104-122 9-27 (191)
248 2pt7_A CAG-ALFA; ATPase, prote 23.0 18 0.00062 37.7 0.1 19 100-120 170-188 (330)
249 4anj_A Unconventional myosin-V 22.8 42 0.0014 40.8 3.2 22 99-120 140-161 (1052)
250 3vaa_A Shikimate kinase, SK; s 22.7 24 0.00081 33.4 0.9 16 105-120 27-42 (199)
251 3sop_A Neuronal-specific septi 22.6 21 0.00072 36.1 0.5 18 103-120 2-19 (270)
252 2yhs_A FTSY, cell division pro 22.5 34 0.0012 38.0 2.2 17 104-120 294-310 (503)
253 3kb2_A SPBC2 prophage-derived 22.3 24 0.00083 31.8 0.8 16 105-120 3-18 (173)
254 1znw_A Guanylate kinase, GMP k 22.3 21 0.00073 34.0 0.4 16 105-120 22-37 (207)
255 2i3b_A HCR-ntpase, human cance 22.2 20 0.0007 34.2 0.3 16 105-120 3-18 (189)
256 2z83_A Helicase/nucleoside tri 22.1 28 0.00095 37.9 1.4 16 105-120 23-38 (459)
257 3kl4_A SRP54, signal recogniti 22.1 61 0.0021 35.3 4.1 19 103-121 97-115 (433)
258 2ga8_A Hypothetical 39.9 kDa p 21.8 53 0.0018 34.9 3.4 21 100-120 21-41 (359)
259 2rhm_A Putative kinase; P-loop 21.6 25 0.00084 32.5 0.7 17 104-120 6-22 (193)
260 1kag_A SKI, shikimate kinase I 21.4 23 0.0008 32.1 0.5 16 105-120 6-21 (173)
261 2fna_A Conserved hypothetical 21.4 26 0.00088 35.6 0.9 17 104-120 31-47 (357)
262 1yks_A Genome polyprotein [con 21.4 27 0.00091 37.8 1.0 21 98-120 5-25 (440)
263 2iut_A DNA translocase FTSK; n 21.4 21 0.00072 40.4 0.2 18 104-121 215-232 (574)
264 4egx_A Kinesin-like protein KI 21.3 2.1E+02 0.0072 27.2 7.3 31 447-478 18-48 (184)
265 3rc3_A ATP-dependent RNA helic 21.2 24 0.00081 40.8 0.6 14 105-118 157-170 (677)
266 1vma_A Cell division protein F 21.1 27 0.00093 36.1 1.0 17 104-120 105-121 (306)
267 1uf9_A TT1252 protein; P-loop, 21.0 31 0.0011 32.1 1.3 20 100-119 5-24 (203)
268 2yvu_A Probable adenylyl-sulfa 21.0 27 0.00091 32.4 0.8 19 102-120 12-30 (186)
269 1tev_A UMP-CMP kinase; ploop, 20.9 27 0.00091 32.1 0.8 16 104-119 4-19 (196)
270 2zj8_A DNA helicase, putative 20.8 25 0.00087 40.4 0.7 30 82-120 27-56 (720)
271 1z6g_A Guanylate kinase; struc 20.5 22 0.00075 34.4 0.1 16 105-120 25-40 (218)
272 2qor_A Guanylate kinase; phosp 20.2 26 0.00088 33.3 0.5 16 105-120 14-29 (204)
No 1
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.8e-69 Score=582.22 Aligned_cols=270 Identities=25% Similarity=0.437 Sum_probs=216.2
Q ss_pred CCCCCCCEEEEEEecCCCCCCC----CceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHH
Q psy2748 18 NNGSSDPLQVFCRIRPMDNSYD----ESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHP 93 (690)
Q Consensus 18 ~~~~~~~V~V~~RvRP~~~~e~----~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~p 93 (690)
.....++|+|+|||||+...|. ..|+...++.++.+..+.. ......|+||+||+++++|++||+.++.|
T Consensus 16 ~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~------~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~p 89 (388)
T 3bfn_A 16 FQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRN------HQETLKYQFDAFYGERSTQQDIYAGSVQP 89 (388)
T ss_dssp SSSCCCCCEEEEEECCCC-----------------------------------CEEEEECSEEECTTCCHHHHHHHHTGG
T ss_pred ccCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCC------CCCeeEEEcceEecCCCCHhHHHHHHHHH
Confidence 3567899999999999987653 4588777777777765433 13467899999999999999999999999
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHH
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQA 173 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~ 173 (690)
+|+++++|||+||||||||||||||||+|++.++|||||++++||+.+.....
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~--------------------------- 142 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGA--------------------------- 142 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTS---------------------------
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhc---------------------------
Confidence 99999999999999999999999999999999999999999999998865211
Q ss_pred HhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEe
Q psy2748 174 EMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIR 253 (690)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ir 253 (690)
.+....|.|++||+|||||.|||||.+.. ..+.++
T Consensus 143 ------------------------------------~~~~~~~~V~vS~lEIYnE~i~DLL~~~~---------~~l~ir 177 (388)
T 3bfn_A 143 ------------------------------------EGRPWALSVTMSYLEIYQEKVLDLLDPAS---------GDLVIR 177 (388)
T ss_dssp ------------------------------------TTCSEEEEEEEEEEEEETTEEEESSSCSS---------CBCCCE
T ss_pred ------------------------------------cCCCceEEEEEEEEEEECCeeeehhccCC---------CCceEE
Confidence 02345799999999999999999998654 346789
Q ss_pred ecCCCCeEEeeeEEEEecCchhhhhh------------------------------------------------------
Q psy2748 254 EDGDKNMFVHGVNEIEVTTPDEAFQS------------------------------------------------------ 279 (690)
Q Consensus 254 ed~~~~~~V~gl~~v~V~s~eea~~~------------------------------------------------------ 279 (690)
||..++++|.|++++.|.+.+|++.+
T Consensus 178 ed~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~skL~lVDLAGS 257 (388)
T 3bfn_A 178 EDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGS 257 (388)
T ss_dssp ECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCEEEEEEEEEECCCT
T ss_pred EcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCceeEEEEEEEECCCC
Confidence 99999999999999999999999876
Q ss_pred ---------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHH
Q psy2748 280 ---------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYD 344 (690)
Q Consensus 280 ---------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ 344 (690)
+++||+||++||+||.+|.+++ .||||||||||+||||+||||++|+||+||+|+..+++
T Consensus 258 Er~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-----~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ 332 (388)
T 3bfn_A 258 EDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL-----PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYL 332 (388)
T ss_dssp TC--------------CCCCHHHHHHHHHHHHHHTTC-----SCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHH
T ss_pred cccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCC-----CCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHH
Confidence 5789999999999999998864 69999999999999999999999999999999999999
Q ss_pred HHhhHHHHHhhhhceeeccCCCCcCC
Q psy2748 345 ENLAVMKFAEMSQEVQISKALPSRLD 370 (690)
Q Consensus 345 ETl~TLrFA~rak~I~~~~~v~~~~~ 370 (690)
||++||+||+||++|+|.|.+|...+
T Consensus 333 ETlsTLrfA~rak~I~n~p~~n~~~~ 358 (388)
T 3bfn_A 333 DTVSALNFAARSKEVINRPFTNESLQ 358 (388)
T ss_dssp HHHHHHHHHCSEEEEC----------
T ss_pred HHHHHHHHHHHHhhCcCcCcccCCCC
Confidence 99999999999999999999987654
No 2
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=4.1e-68 Score=572.07 Aligned_cols=269 Identities=25% Similarity=0.464 Sum_probs=230.5
Q ss_pred CCCCEEEEEEecCCCCCC----CCceEEEec-CcEEEEcCCCCC-CCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHH
Q psy2748 21 SSDPLQVFCRIRPMDNSY----DESCISVVS-DTTVQLTPPDGS-NPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPL 94 (690)
Q Consensus 21 ~~~~V~V~~RvRP~~~~e----~~~~i~v~~-~~tv~l~~p~~~-~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~pl 94 (690)
..++|+||||+||+...| ...|+.+.+ +.+|.+.+|... .........+.|.||+||+++++|++||+.++.|+
T Consensus 2 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~pl 81 (350)
T 2vvg_A 2 SSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPL 81 (350)
T ss_dssp --CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHH
T ss_pred CCCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHH
Confidence 367899999999998654 345677654 468888887653 11122345689999999999999999999999999
Q ss_pred HHHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHHH
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAE 174 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~ 174 (690)
|+++++|||+||||||||||||||||+|+..++|||||++++||+.+...
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~------------------------------ 131 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSS------------------------------ 131 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTC------------------------------
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhh------------------------------
Confidence 99999999999999999999999999999999999999999999988641
Q ss_pred hhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEee
Q psy2748 175 MNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIRE 254 (690)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ire 254 (690)
..+..|.|++||+|||||.|||||.+. ..+.+++
T Consensus 132 ------------------------------------~~~~~~~v~vS~~EIYnE~i~DLL~~~----------~~l~i~e 165 (350)
T 2vvg_A 132 ------------------------------------SSNQNFLVIGSYLELYNEEIRDLIKNN----------TKLPLKE 165 (350)
T ss_dssp ------------------------------------CTTEEEEEEEEEEEEETTEEEETTTTE----------EEECEEE
T ss_pred ------------------------------------ccCCcEEEEEEEEEEeCCEEEEcccCC----------cCceeeE
Confidence 134579999999999999999999732 2457999
Q ss_pred cCCCCeEEeeeEEEEecCchhhhhh-------------------------------------------------------
Q psy2748 255 DGDKNMFVHGVNEIEVTTPDEAFQS------------------------------------------------------- 279 (690)
Q Consensus 255 d~~~~~~V~gl~~v~V~s~eea~~~------------------------------------------------------- 279 (690)
|+.+++||.|++++.|.+.+|++.+
T Consensus 166 ~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~lVDLAGS 245 (350)
T 2vvg_A 166 DKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLAGS 245 (350)
T ss_dssp ETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEEEEEEEECCCC
T ss_pred cCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEEEeCCCC
Confidence 9999999999999999999999877
Q ss_pred ---------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHH
Q psy2748 280 ---------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYD 344 (690)
Q Consensus 280 ---------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ 344 (690)
+.+||+||++||+||.+|.+++ .||||||||||+||||+||||++|+||+||+|+..+++
T Consensus 246 Er~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-----~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ 320 (350)
T 2vvg_A 246 ERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-----THIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYD 320 (350)
T ss_dssp CC---------------CTTHHHHHHHHHHHHHHHTC-----SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHH
T ss_pred CccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC-----CCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHH
Confidence 5689999999999999999865 79999999999999999999999999999999999999
Q ss_pred HHhhHHHHHhhhhceeeccCCCCcCC
Q psy2748 345 ENLAVMKFAEMSQEVQISKALPSRLD 370 (690)
Q Consensus 345 ETl~TLrFA~rak~I~~~~~v~~~~~ 370 (690)
||++||+||+||++|++.|.+|...+
T Consensus 321 ETl~TL~fA~rak~i~n~~~~n~~~~ 346 (350)
T 2vvg_A 321 ETMSTLRYADRAKQIKNKPRINEDPK 346 (350)
T ss_dssp HHHHHHHHHHHHTTCBCCCCCCBSCT
T ss_pred HHHHHHHHHHHHhhccccceecCCch
Confidence 99999999999999999999987654
No 3
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.9e-68 Score=571.22 Aligned_cols=267 Identities=26% Similarity=0.443 Sum_probs=218.7
Q ss_pred CCCCCCCCEEEEEEecCCCCCCCCceEEEecCcEEEEcCCCCC--CCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHH
Q psy2748 17 QNNGSSDPLQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGS--NPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPL 94 (690)
Q Consensus 17 ~~~~~~~~V~V~~RvRP~~~~e~~~~i~v~~~~tv~l~~p~~~--~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~pl 94 (690)
.+.+.+++|+|||||||+...+.+.+....+..+|.+..+... ...+.....+.|+||+||+ +++|++||+.+++||
T Consensus 18 ~~~~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~pl 96 (359)
T 3nwn_A 18 GSMGTRKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDV 96 (359)
T ss_dssp ------CCEEEEEEECCCSSCCTTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHH
T ss_pred CCCCCCCCEEEEEEcCCCCcccccceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHH
Confidence 4467789999999999998666554444445678888877664 1122334567899999997 689999999999999
Q ss_pred HHHHhccCCeEEEEecccCCCCeeecCCCCC---CCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHH
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTMNGTNS---DGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQE 171 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~---~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~ 171 (690)
|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.+...
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~--------------------------- 149 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEER--------------------------- 149 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTC---------------------------
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcC---------------------------
Confidence 9999999999999999999999999999764 4899999999999987651
Q ss_pred HHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccce
Q psy2748 172 QAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRL 251 (690)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ 251 (690)
.+..|.|++||+|||||.|||||++.....+ ......
T Consensus 150 ----------------------------------------~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~---~~~~~~ 186 (359)
T 3nwn_A 150 ----------------------------------------PTHAITVRVSYLEIYNESLFDLLSTLPYVGP---SVTPMT 186 (359)
T ss_dssp ----------------------------------------TTSCEEEEEEEEEEETTEEEETTSSSTTSCT---TTSCCE
T ss_pred ----------------------------------------CCCcEEEEEEEEEEecccccccccccccccc---ccccce
Confidence 2346899999999999999999987653211 123445
Q ss_pred EeecCCCCeEEeeeEEEEecCchhhhhh----------------------------------------------------
Q psy2748 252 IREDGDKNMFVHGVNEIEVTTPDEAFQS---------------------------------------------------- 279 (690)
Q Consensus 252 ired~~~~~~V~gl~~v~V~s~eea~~~---------------------------------------------------- 279 (690)
++++. .+++|.|++++.|.+.+|++.+
T Consensus 187 ~~~~~-~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~skL~lVDL 265 (359)
T 3nwn_A 187 IVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDL 265 (359)
T ss_dssp EEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEEEEEEEEEC
T ss_pred EEecC-CceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccCcccccccceeeec
Confidence 66776 4699999999999999999887
Q ss_pred ------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCC
Q psy2748 280 ------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVE 341 (690)
Q Consensus 280 ------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~ 341 (690)
+.+||+||++||+||.+|++++ ..||||||||||+||||+||||++|+|||||+|+..
T Consensus 266 AGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~----~~hVPYRdSkLT~lLqdsLgGnskt~mI~~isP~~~ 341 (359)
T 3nwn_A 266 AGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQK----RDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAA 341 (359)
T ss_dssp CCCC----------------CCSTHHHHHHHHHHHHHC---------CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGG
T ss_pred cccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcC----CCcCCcccCHHHHHHHHhcCCCccEEEEEEeCCchh
Confidence 6789999999999999998753 369999999999999999999999999999999999
Q ss_pred CHHHHhhHHHHHhhhhce
Q psy2748 342 DYDENLAVMKFAEMSQEV 359 (690)
Q Consensus 342 ~~~ETl~TLrFA~rak~I 359 (690)
+|+|||+||+||+|||+|
T Consensus 342 ~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 342 QLEETLSSLRFASRMKLV 359 (359)
T ss_dssp GHHHHHHHHHHHTTGGGC
T ss_pred hHHHHHHHHHHHHHHcCC
Confidence 999999999999999986
No 4
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=4.4e-67 Score=565.44 Aligned_cols=263 Identities=25% Similarity=0.511 Sum_probs=234.9
Q ss_pred CCCCCEEEEEEecCCCCC----CCCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHH
Q psy2748 20 GSSDPLQVFCRIRPMDNS----YDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLV 95 (690)
Q Consensus 20 ~~~~~V~V~~RvRP~~~~----e~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV 95 (690)
...++|+|+|||||+... ....|+.+.++.++.+.... ....|.||+||+++++|++||+.++.|+|
T Consensus 3 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~---------~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 73 (355)
T 1goj_A 3 SSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKE---------AQGSFTFDRVFDMSCKQSDIFDFSIKPTV 73 (355)
T ss_dssp CSSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTT---------CCEEEECSEEECTTCCHHHHHHHHTHHHH
T ss_pred CCCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccCC---------CccEEeeCeEECCCCccHHHHHHHHHHHH
Confidence 457899999999999853 34567888888887765322 35789999999999999999999999999
Q ss_pred HHHhccCCeEEEEecccCCCCeeecCCCC----CCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHH
Q psy2748 96 ANLIHAKNGLLLTYGVTGSGKTYTMNGTN----SDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQE 171 (690)
Q Consensus 96 ~~~l~G~N~~IfaYGqTGSGKTyTm~G~~----~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~ 171 (690)
+++++|||+||||||||||||||||+|+. .++|||||++++||+.|...
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~--------------------------- 126 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSS--------------------------- 126 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTS---------------------------
T ss_pred HHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhc---------------------------
Confidence 99999999999999999999999999963 56899999999999988651
Q ss_pred HHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccce
Q psy2748 172 QAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRL 251 (690)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ 251 (690)
..+..|.|++||+|||||.|||||.+.. ..+.
T Consensus 127 ---------------------------------------~~~~~~~v~vS~~EIYnE~i~DLL~~~~---------~~l~ 158 (355)
T 1goj_A 127 ---------------------------------------AANIEYTVRVSYMEIYMERIRDLLAPQN---------DNLP 158 (355)
T ss_dssp ---------------------------------------CTTEEEEEEEEEEEEETTEEEETTSTTC---------CSCC
T ss_pred ---------------------------------------ccCceEEEEEEEEEEECCEEEEcccCcc---------CCce
Confidence 1345799999999999999999998754 3456
Q ss_pred EeecCCCCeEEeeeEEEEecCchhhhhh----------------------------------------------------
Q psy2748 252 IREDGDKNMFVHGVNEIEVTTPDEAFQS---------------------------------------------------- 279 (690)
Q Consensus 252 ired~~~~~~V~gl~~v~V~s~eea~~~---------------------------------------------------- 279 (690)
+++|+.++++|.|++++.|.+.+|++.+
T Consensus 159 i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAG 238 (355)
T 1goj_A 159 VHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAG 238 (355)
T ss_dssp EEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEECCC
T ss_pred eEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEEECCC
Confidence 8999999999999999999999999877
Q ss_pred ----------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCH
Q psy2748 280 ----------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDY 343 (690)
Q Consensus 280 ----------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~ 343 (690)
+.+||+||++|++||.+|++++ ..||||||||||+||||+||||++|+||+||+|+..++
T Consensus 239 SEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~----~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~ 314 (355)
T 1goj_A 239 SEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGK----SSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYND 314 (355)
T ss_dssp CSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCS----CSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGH
T ss_pred CCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCC----CCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccH
Confidence 6789999999999999998853 37999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHhhhhceeeccCCCCcCC
Q psy2748 344 DENLAVMKFAEMSQEVQISKALPSRLD 370 (690)
Q Consensus 344 ~ETl~TLrFA~rak~I~~~~~v~~~~~ 370 (690)
+||++||+||+||++|++.+.+|...+
T Consensus 315 ~ETl~TL~fA~rak~I~n~~~vn~~~~ 341 (355)
T 1goj_A 315 AETLSTLRFGMRAKSIKNKAKVNAELS 341 (355)
T ss_dssp HHHHHHHHHHHHHHTCBCCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhhccCCceeCCCCC
Confidence 999999999999999999999987654
No 5
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=3.8e-67 Score=567.91 Aligned_cols=270 Identities=26% Similarity=0.481 Sum_probs=231.7
Q ss_pred CCCCCCCCEEEEEEecCCCCCC----CCceEEEec-CcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhh
Q psy2748 17 QNNGSSDPLQVFCRIRPMDNSY----DESCISVVS-DTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVA 91 (690)
Q Consensus 17 ~~~~~~~~V~V~~RvRP~~~~e----~~~~i~v~~-~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~ 91 (690)
..+..+++|+|+|||||+...| ...|+.+.. ..+|.+..|... .....+.|+||+||+++++|++||+.++
T Consensus 15 ~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~----~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~ 90 (372)
T 3b6u_A 15 YFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGT----AHEMPKTFTFDAVYDWNAKQFELYDETF 90 (372)
T ss_dssp ------CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCT----TTCCCEEEECSEEECTTCCHHHHHHHTH
T ss_pred ccCCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCC----CCCCceEEEcCeEeCCcCchHHHHHHHH
Confidence 3467789999999999998643 345666654 568888877652 1234678999999999999999999999
Q ss_pred HHHHHHHhccCCeEEEEecccCCCCeeecCCCCC---CCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHH
Q psy2748 92 HPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNS---DGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDIL 168 (690)
Q Consensus 92 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~---~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~l 168 (690)
.|+|+++++|||+||||||||||||||||+|... ++|||||++++||+.+..
T Consensus 91 ~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~------------------------- 145 (372)
T 3b6u_A 91 RPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISR------------------------- 145 (372)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHT-------------------------
T ss_pred HHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhh-------------------------
Confidence 9999999999999999999999999999999754 579999999999998864
Q ss_pred HHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccc
Q psy2748 169 LQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLN 248 (690)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~ 248 (690)
..+..|.|++||+|||||.|||||.+... .
T Consensus 146 ------------------------------------------~~~~~~~v~vS~~EIYnE~i~DLL~~~~~--------~ 175 (372)
T 3b6u_A 146 ------------------------------------------SQNQQYLVRASYLEIYQEEIRDLLSKDQT--------K 175 (372)
T ss_dssp ------------------------------------------CSSCEEEEEEEEEEEETTEEEETTSSCTT--------C
T ss_pred ------------------------------------------ccCCceEEEEEEEEEeCCEEEECCCCCCC--------C
Confidence 13457999999999999999999986542 3
Q ss_pred cceEeecCCCCeEEeeeEEEEecCchhhhhh-------------------------------------------------
Q psy2748 249 NRLIREDGDKNMFVHGVNEIEVTTPDEAFQS------------------------------------------------- 279 (690)
Q Consensus 249 ~~~ired~~~~~~V~gl~~v~V~s~eea~~~------------------------------------------------- 279 (690)
.+.+++++.++++|.|++++.|.+.+|++.+
T Consensus 176 ~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~ 255 (372)
T 3b6u_A 176 RLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLN 255 (372)
T ss_dssp CBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEE
T ss_pred CceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEE
Confidence 4678999999999999999999999999877
Q ss_pred ----------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeC
Q psy2748 280 ----------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVN 337 (690)
Q Consensus 280 ----------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVs 337 (690)
+.+||+||++|++||.+|++++ ..||||||||||+||||+||||++|+||+||+
T Consensus 256 lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~----~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vs 331 (372)
T 3b6u_A 256 LVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGK----STHIPYRDSKLTRLLQDSLGGNAKTVMVANVG 331 (372)
T ss_dssp EEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC-------CCCGGGSHHHHHTTTTTTSSSEEEEEEEEC
T ss_pred EEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCC----CCCCcccccHHHHHHHHhcCCCccEEEEEEeC
Confidence 6789999999999999998753 36999999999999999999999999999999
Q ss_pred CCCCCHHHHhhHHHHHhhhhceeeccCCCCcC
Q psy2748 338 PRVEDYDENLAVMKFAEMSQEVQISKALPSRL 369 (690)
Q Consensus 338 P~~~~~~ETl~TLrFA~rak~I~~~~~v~~~~ 369 (690)
|+..+++||++||+||+||++|++.|.+|...
T Consensus 332 P~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~ 363 (372)
T 3b6u_A 332 PASYNVEETLTTLRYANRAKNIKNKPRVNEDP 363 (372)
T ss_dssp CBGGGHHHHHHHHHHHHHHTTCBCCCCCCC--
T ss_pred CcccCHHHHHHHHHHHHHHhhccccceecCCh
Confidence 99999999999999999999999999988754
No 6
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1.4e-67 Score=571.08 Aligned_cols=263 Identities=24% Similarity=0.390 Sum_probs=227.8
Q ss_pred CCCCCEEEEEEecCCCCCC--CCceEEEec--CcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHH
Q psy2748 20 GSSDPLQVFCRIRPMDNSY--DESCISVVS--DTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLV 95 (690)
Q Consensus 20 ~~~~~V~V~~RvRP~~~~e--~~~~i~v~~--~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV 95 (690)
+.+++|+|||||||+...| ...|+.+.. ..+|...... ...+.|.||+||+++++|++||+. +.|+|
T Consensus 2 e~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv 72 (369)
T 3cob_A 2 DMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKD--------DKAKQHMYDRVFDGNATQDDVFED-TKYLV 72 (369)
T ss_dssp --CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECTT--------SCEEEEECSEEECTTCCHHHHHHT-TTHHH
T ss_pred CCCCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCCC--------CCceEEecCEEECCCCCcceehhh-hhhhh
Confidence 5689999999999998644 223443333 3344432221 245789999999999999999999 58999
Q ss_pred HHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHHHh
Q psy2748 96 ANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEM 175 (690)
Q Consensus 96 ~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~~ 175 (690)
+++++|||+||||||||||||||||+|++.++|||||++++||+.+...
T Consensus 73 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~------------------------------- 121 (369)
T 3cob_A 73 QSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKD------------------------------- 121 (369)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHT-------------------------------
T ss_pred HhhhcCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhh-------------------------------
Confidence 9999999999999999999999999999999999999999999988652
Q ss_pred hcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEeec
Q psy2748 176 NGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIRED 255 (690)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ired 255 (690)
.....|.|++||+|||||.|||||.+.... ...+.+++|
T Consensus 122 -----------------------------------~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~------~~~l~i~e~ 160 (369)
T 3cob_A 122 -----------------------------------SNKFSFSLKAYMVELYQDTLVDLLLPKQAK------RLKLDIKKD 160 (369)
T ss_dssp -----------------------------------TTTEEEEEEEEEEEECSSCEEESSCCSSSC------CCCCEEEEC
T ss_pred -----------------------------------ccCceeEEEEEEEEEeCceeeecCCCcccC------CcceEEEEC
Confidence 123479999999999999999999875421 235679999
Q ss_pred CCCCeEEeeeEEEEecCchhhhhh--------------------------------------------------------
Q psy2748 256 GDKNMFVHGVNEIEVTTPDEAFQS-------------------------------------------------------- 279 (690)
Q Consensus 256 ~~~~~~V~gl~~v~V~s~eea~~~-------------------------------------------------------- 279 (690)
+.++++|.|++++.|.+.+|++.+
T Consensus 161 ~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~ 240 (369)
T 3cob_A 161 SKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERV 240 (369)
T ss_dssp TTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSSCC
T ss_pred CCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEeCCCCCcc
Confidence 999999999999999999999887
Q ss_pred ------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHHHHh
Q psy2748 280 ------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENL 347 (690)
Q Consensus 280 ------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl 347 (690)
+.+||+||++||+||.+|++++ .||||||||||+||||+||||++|+|||||+|+..+++||+
T Consensus 241 ~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-----~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl 315 (369)
T 3cob_A 241 KKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-----QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETH 315 (369)
T ss_dssp CCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTC-----SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHH
T ss_pred cccCccchhhHHHHHHHHHHHHHHHHHHHHhcCC-----CcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHH
Confidence 5679999999999999999865 79999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhceeeccCCCCc
Q psy2748 348 AVMKFAEMSQEVQISKALPSR 368 (690)
Q Consensus 348 ~TLrFA~rak~I~~~~~v~~~ 368 (690)
+||+||+||++|++.|.+|..
T Consensus 316 ~TLrfA~rak~i~~~~~~n~~ 336 (369)
T 3cob_A 316 NSLTYASRVRSIVNDPSKNVS 336 (369)
T ss_dssp HHHHHHHHHHTCBCCCCCCEE
T ss_pred HHHHHHHHHhhcccCCcccCC
Confidence 999999999999999988764
No 7
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.5e-66 Score=559.99 Aligned_cols=263 Identities=29% Similarity=0.507 Sum_probs=227.1
Q ss_pred CCCCEEEEEEecCCCCCCC----CceEEEe-cCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHH
Q psy2748 21 SSDPLQVFCRIRPMDNSYD----ESCISVV-SDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLV 95 (690)
Q Consensus 21 ~~~~V~V~~RvRP~~~~e~----~~~i~v~-~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV 95 (690)
..++|+|+|||||+...|. ..++.+. ++.++...+ ..+.|.||+||+++++|++||+.++.|+|
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~-----------~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv 70 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVD-----------GSKSFNFDRVFHGNETTKNVYEEIAAPII 70 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEETT-----------SSCEEECSCEECTTSCHHHHHHHTTHHHH
T ss_pred CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEECC-----------CCeEEECCEEECCCCCHHHHHHHHHHHHH
Confidence 4689999999999987653 2233333 344443321 23589999999999999999999999999
Q ss_pred HHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHHHh
Q psy2748 96 ANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEM 175 (690)
Q Consensus 96 ~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~~~ 175 (690)
+++++|||+||||||||||||||||+|++.++|||||++++||+.++..
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~------------------------------- 119 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKF------------------------------- 119 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGC-------------------------------
T ss_pred HHHHcCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhC-------------------------------
Confidence 9999999999999999999999999999999999999999999988651
Q ss_pred hcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEeec
Q psy2748 176 NGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIRED 255 (690)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ired 255 (690)
.+..|.|++||+|||||.|||||.+... ...+.++||
T Consensus 120 ------------------------------------~~~~~~v~vS~~EIYnE~i~DLL~~~~~-------~~~l~i~ed 156 (349)
T 1t5c_A 120 ------------------------------------PDREFLLRVSYMEIYNETITDLLCGTQK-------MKPLIIRED 156 (349)
T ss_dssp ------------------------------------TTEEEEEEEEEEEEETTEEEESSSSSCT-------TCCEEEEET
T ss_pred ------------------------------------cCCcEEEEEEEEEEeCCEEEEccCCCCC-------CCCceEEEC
Confidence 2456999999999999999999986542 245679999
Q ss_pred CCCCeEEeeeEEEEecCchhhhhh--------------------------------------------------------
Q psy2748 256 GDKNMFVHGVNEIEVTTPDEAFQS-------------------------------------------------------- 279 (690)
Q Consensus 256 ~~~~~~V~gl~~v~V~s~eea~~~-------------------------------------------------------- 279 (690)
+.++++|.|++++.|.+.+|++.+
T Consensus 157 ~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLA 236 (349)
T 1t5c_A 157 VNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLA 236 (349)
T ss_dssp TTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECC
T ss_pred CCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECC
Confidence 999999999999999999999876
Q ss_pred -----------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCC
Q psy2748 280 -----------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVED 342 (690)
Q Consensus 280 -----------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~ 342 (690)
+.+||+||++|++||.+|++++. ..||||||||||+||||+||||++|+||+||+|. +
T Consensus 237 GSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~---~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~ 311 (349)
T 1t5c_A 237 GSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQV---GGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--S 311 (349)
T ss_dssp CGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCC---TTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--C
T ss_pred CCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCC---CCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--C
Confidence 56799999999999999998752 3699999999999999999999999999999995 6
Q ss_pred HHHHhhHHHHHhhhhceeeccCCCCcCCCCC
Q psy2748 343 YDENLAVMKFAEMSQEVQISKALPSRLDFGL 373 (690)
Q Consensus 343 ~~ETl~TLrFA~rak~I~~~~~v~~~~~~~~ 373 (690)
++||++||+||+||++|+|.|.+|...+..+
T Consensus 312 ~~ETlsTL~fA~rak~I~n~~~vn~~~~~~~ 342 (349)
T 1t5c_A 312 FDETLTALQFASTAKYMKNTPYVNEVSTDEL 342 (349)
T ss_dssp SHHHHHHHHHHHHHTTCCCCCCCCEEC----
T ss_pred HHHHHHHHHHHHHHhhcccCceeccCCCCCC
Confidence 9999999999999999999999998765444
No 8
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=5.5e-67 Score=565.04 Aligned_cols=264 Identities=28% Similarity=0.500 Sum_probs=213.2
Q ss_pred CCCCCCCEEEEEEecCCCCCC----CCceEEEecCcEEEEcCCCCC-CCC-----------cCCCcceEEEecEEeCCCC
Q psy2748 18 NNGSSDPLQVFCRIRPMDNSY----DESCISVVSDTTVQLTPPDGS-NPR-----------YFNNKEVQYVFKKIFNVDV 81 (690)
Q Consensus 18 ~~~~~~~V~V~~RvRP~~~~e----~~~~i~v~~~~tv~l~~p~~~-~~r-----------~~~~~~~~f~Fd~VF~~~a 81 (690)
.++.+++|+|+|||||+...| ...|+.+.++.++.+.++... ... ....+...|.||+||++++
T Consensus 5 ~~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~ 84 (355)
T 3lre_A 5 EEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETS 84 (355)
T ss_dssp -------CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTC
T ss_pred hhhccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCC
Confidence 456789999999999998654 456778877776666554332 100 0123567899999999999
Q ss_pred ChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCccee
Q psy2748 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEV 161 (690)
Q Consensus 82 sQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i 161 (690)
+|++||+.++.|+|+++++|||+||||||||||||||||+|++.++|||||++++||+.+...
T Consensus 85 ~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~----------------- 147 (355)
T 3lre_A 85 TQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEI----------------- 147 (355)
T ss_dssp CHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHT-----------------
T ss_pred ChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhh-----------------
Confidence 999999999999999999999999999999999999999999999999999999999988762
Q ss_pred hhHHHHHHHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCC
Q psy2748 162 QSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGN 241 (690)
Q Consensus 162 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~ 241 (690)
.....|.|.+||+|||||.|||||.+..
T Consensus 148 -------------------------------------------------~~~~~~~v~vS~~EIYnE~i~DLL~~~~--- 175 (355)
T 3lre_A 148 -------------------------------------------------KEEKICSTAVSYLEVYNEQIRDLLVNSG--- 175 (355)
T ss_dssp -------------------------------------------------TTTEEEEEEEEEEEEETTEEEESSSCCC---
T ss_pred -------------------------------------------------ccCceEEEEEEEEEEECCEEEECcCCCC---
Confidence 1234689999999999999999997533
Q ss_pred ccccccccceEeecCCCCeEEeeeEEEEecCchhhhhh------------------------------------------
Q psy2748 242 NARIQLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQS------------------------------------------ 279 (690)
Q Consensus 242 ~~~~~~~~~~ired~~~~~~V~gl~~v~V~s~eea~~~------------------------------------------ 279 (690)
.+.++||+.++++|.|++++.|.+.+|++.+
T Consensus 176 -------~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~ 248 (355)
T 3lre_A 176 -------PLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQN 248 (355)
T ss_dssp -------CBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSCTTCC
T ss_pred -------CceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCCCCCC
Confidence 4679999999999999999999999999887
Q ss_pred -----------------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCcee
Q psy2748 280 -----------------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDV 330 (690)
Q Consensus 280 -----------------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt 330 (690)
+.+||+||++||+||.+|++++. +..||||||||||+||||+||||++|
T Consensus 249 ~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~--~~~hiPyRdSkLT~lL~dsLgGnskt 326 (355)
T 3lre_A 249 VRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKR--KNQHIPYRNSKLTRLLKDSLGGNCQT 326 (355)
T ss_dssp CCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC----------CCGGGSHHHHHTTTTSSTTSEE
T ss_pred EEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCcCCcccCHHHHHHHHhcCCCceE
Confidence 56899999999999999998652 34799999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHhhHHHHHhhhhce
Q psy2748 331 RMIVCVNPRVEDYDENLAVMKFAEMSQEV 359 (690)
Q Consensus 331 ~mIvcVsP~~~~~~ETl~TLrFA~rak~I 359 (690)
+||+||+|+..+|+||++||+||+||++|
T Consensus 327 ~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 327 IMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999986
No 9
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=7.7e-67 Score=566.94 Aligned_cols=264 Identities=28% Similarity=0.505 Sum_probs=230.1
Q ss_pred CCCCCCCEEEEEEecCCCCCC----CCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHH
Q psy2748 18 NNGSSDPLQVFCRIRPMDNSY----DESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHP 93 (690)
Q Consensus 18 ~~~~~~~V~V~~RvRP~~~~e----~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~p 93 (690)
....+++|+|||||||+...| ...|+.+.++.++.+.++.. ....+.|+||+||+++++|++||+.++.|
T Consensus 18 ~~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~p 91 (373)
T 2wbe_C 18 QKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLD------SKLTKKFTFDRSFGPESKQCDVYSVVVSP 91 (373)
T ss_dssp CCCCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSS------STTCEEEECSEEECTTCCHHHHHHHHHHH
T ss_pred CcCCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCC------CCCceEEeccEEeccccchhHHHHHHHHH
Confidence 346688999999999998654 45678888888888765433 13467899999999999999999999999
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeecCCCCC-----------CCChHHHHHHHHHHHhcccCCCCccccCCCCCcceeh
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTMNGTNS-----------DGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQ 162 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~-----------~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~ 162 (690)
||+++++|||+||||||||||||||||+|+.. ++|||||++++||+.+..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~------------------- 152 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRM------------------- 152 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHh-------------------
Confidence 99999999999999999999999999999764 689999999999998854
Q ss_pred hHHHHHHHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCc
Q psy2748 163 SQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNN 242 (690)
Q Consensus 163 ~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~ 242 (690)
.+..|.|++||+|||||.|||||.+...
T Consensus 153 -------------------------------------------------~~~~~~v~vS~~EIYnE~i~DLL~~~~~--- 180 (373)
T 2wbe_C 153 -------------------------------------------------MEVEYTMRISYLELYNEELCDLLSTDDT--- 180 (373)
T ss_dssp -------------------------------------------------CCSCEEEEEEEEEEETTEEEESSCTTSC---
T ss_pred -------------------------------------------------cCceEEEEEEEEEEeCCeEEECCCCCCC---
Confidence 1235899999999999999999986542
Q ss_pred cccccccceEeec--CCCCeEEeeeEEEEecCchhhhhh-----------------------------------------
Q psy2748 243 ARIQLNNRLIRED--GDKNMFVHGVNEIEVTTPDEAFQS----------------------------------------- 279 (690)
Q Consensus 243 ~~~~~~~~~ired--~~~~~~V~gl~~v~V~s~eea~~~----------------------------------------- 279 (690)
..+.+++| ..++++|.|++++.|.+.+|++.+
T Consensus 181 -----~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 255 (373)
T 2wbe_C 181 -----TKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGED 255 (373)
T ss_dssp -----SCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCC
T ss_pred -----CCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCCc
Confidence 23456776 457899999999999999999877
Q ss_pred -------------------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCc
Q psy2748 280 -------------------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDG 328 (690)
Q Consensus 280 -------------------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGns 328 (690)
+.+||+||++|++||.+|.+++ .||||||||||+||||+||||+
T Consensus 256 ~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-----~hvPyRdSkLT~lLqdsLgGns 330 (373)
T 2wbe_C 256 MLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRA-----PHVPYRESKLTRLLQESLGGRT 330 (373)
T ss_dssp EEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCS-----SCCCGGGCHHHHHTHHHHHSSS
T ss_pred ceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCC-----CcCccccchHHHHHHHHhCCCc
Confidence 4589999999999999999865 7999999999999999999999
Q ss_pred eeEEEEEeCCCCCCHHHHhhHHHHHhhhhceeeccCCCCc
Q psy2748 329 DVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQISKALPSR 368 (690)
Q Consensus 329 kt~mIvcVsP~~~~~~ETl~TLrFA~rak~I~~~~~v~~~ 368 (690)
+|+||+||+|+..+++|||+||+||+||++|+|.|.+|..
T Consensus 331 kt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~ 370 (373)
T 2wbe_C 331 KTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQK 370 (373)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEE
T ss_pred eEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceeccc
Confidence 9999999999999999999999999999999999998864
No 10
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=8.7e-67 Score=565.58 Aligned_cols=268 Identities=28% Similarity=0.484 Sum_probs=220.2
Q ss_pred CCCEEEEEEecCCCCCC---CCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCC--------CChHHHHHHh
Q psy2748 22 SDPLQVFCRIRPMDNSY---DESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVD--------VGQKQVYSEV 90 (690)
Q Consensus 22 ~~~V~V~~RvRP~~~~e---~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~--------asQ~evF~~v 90 (690)
..+|+|+|||||+...| ...|+...++.++.+..|... ....+.|+||+||+++ ++|++||+.+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~-----~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~ 77 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQP-----KETPKSFSFDYSYWSHTSPEDINYASQKQVYRDI 77 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCT-----TSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHT
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCC-----CCCceEEecceEeecCccccccccCcHHHHHHHH
Confidence 46899999999998653 334555555666666665442 2346789999999987 8999999999
Q ss_pred hHHHHHHHhccCCeEEEEecccCCCCeeecCCCC--CCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHH
Q psy2748 91 AHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTN--SDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDIL 168 (690)
Q Consensus 91 ~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~--~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~l 168 (690)
+.|+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.|....
T Consensus 78 ~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~----------------------- 134 (366)
T 2zfi_A 78 GEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTT----------------------- 134 (366)
T ss_dssp HHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCC-----------------------
T ss_pred HHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcc-----------------------
Confidence 9999999999999999999999999999999985 468999999999999987521
Q ss_pred HHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccc
Q psy2748 169 LQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLN 248 (690)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~ 248 (690)
+.+..|.|++||+|||||.|||||.+... .
T Consensus 135 ------------------------------------------~~~~~~~v~vS~~EIYnE~v~DLL~~~~~--------~ 164 (366)
T 2zfi_A 135 ------------------------------------------NDNMSYSVEVSYMEIYCERVRDLLNPKNK--------G 164 (366)
T ss_dssp ------------------------------------------CTTEEEEEEEEEEEEETTEEEETTCTTTC--------S
T ss_pred ------------------------------------------cCCeeEEEEEEEEEeeCCeEEEccccccC--------C
Confidence 23457999999999999999999986542 3
Q ss_pred cceEeecCCCCeEEeeeEEEEecCchhhhhh-------------------------------------------------
Q psy2748 249 NRLIREDGDKNMFVHGVNEIEVTTPDEAFQS------------------------------------------------- 279 (690)
Q Consensus 249 ~~~ired~~~~~~V~gl~~v~V~s~eea~~~------------------------------------------------- 279 (690)
.+.+++|+..+++|.|++++.|.+.+|++.+
T Consensus 165 ~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL 244 (366)
T 2zfi_A 165 NLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKI 244 (366)
T ss_dssp CBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEEEE
T ss_pred CceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeEeEE
Confidence 4679999999999999999999999999877
Q ss_pred -----------------------ccccccccchHHHHHHHHhhhcc-------cCCCCCCCCCCchhhhcccccCCCCce
Q psy2748 280 -----------------------IGNINNSLMTLRTCLEILRENQL-------QGTNKIPPFRESKLTHLFKSYFTGDGD 329 (690)
Q Consensus 280 -----------------------a~~IN~SL~aL~~cI~aL~~~q~-------~g~~~~VPYRdSKLT~LLkdsLgGnsk 329 (690)
+.+||+||++|++||.+|++++. .++..||||||||||+||||+||||++
T Consensus 245 ~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnsk 324 (366)
T 2zfi_A 245 SLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSR 324 (366)
T ss_dssp EEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTTCE
T ss_pred EEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCCce
Confidence 56799999999999999998642 124579999999999999999999999
Q ss_pred eEEEEEeCCCCCCHHHHhhHHHHHhhhhceeeccCCCC
Q psy2748 330 VRMIVCVNPRVEDYDENLAVMKFAEMSQEVQISKALPS 367 (690)
Q Consensus 330 t~mIvcVsP~~~~~~ETl~TLrFA~rak~I~~~~~v~~ 367 (690)
|+||+||+|+..+++||++||+||+||++|++.+.++.
T Consensus 325 t~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 325 TAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 99999999999999999999999999999999888764
No 11
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=1.9e-66 Score=554.69 Aligned_cols=247 Identities=30% Similarity=0.548 Sum_probs=222.7
Q ss_pred CCCCCEEEEEEecCCCCCC----CCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHH
Q psy2748 20 GSSDPLQVFCRIRPMDNSY----DESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLV 95 (690)
Q Consensus 20 ~~~~~V~V~~RvRP~~~~e----~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV 95 (690)
..+++|+|+|||||+...| ...|+.+.++.+|.+. .+.|.||+||+++++|++||+.++.|+|
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~-------------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv 70 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA-------------SKPYAFDRVFQSSTSQEQVYNDCAKKIV 70 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET-------------TEEEECSEEECTTCCHHHHHHHHTHHHH
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC-------------CEEEECCeEeCCCCCHHHHHHHHhhhhH
Confidence 4578999999999998654 3456777777777663 3579999999999999999999999999
Q ss_pred HHHhccCCeEEEEecccCCCCeeecCCCCCC---CChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHH
Q psy2748 96 ANLIHAKNGLLLTYGVTGSGKTYTMNGTNSD---GGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQ 172 (690)
Q Consensus 96 ~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~---~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~ 172 (690)
+++++|||+||||||||||||||||+|+..+ .|||||++++||+.+...
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~---------------------------- 122 (325)
T 1bg2_A 71 KDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSM---------------------------- 122 (325)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhc----------------------------
Confidence 9999999999999999999999999997544 599999999999988651
Q ss_pred HHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceE
Q psy2748 173 AEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLI 252 (690)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~i 252 (690)
+++..|.|++||+|||||.|||||++.. ..+.+
T Consensus 123 --------------------------------------~~~~~~~v~vS~~EIYnE~v~DLL~~~~---------~~l~i 155 (325)
T 1bg2_A 123 --------------------------------------DENLEFHIKVSYFEIYLDKIRDLLDVSK---------TNLSV 155 (325)
T ss_dssp --------------------------------------CSSEEEEEEEEEEEEETTEEEESSCTTC---------CSBCE
T ss_pred --------------------------------------cCCceEEEEEEEEEEecCeeeecccCCC---------CCceE
Confidence 2345799999999999999999998644 34679
Q ss_pred eecCCCCeEEeeeEEEEecCchhhhhh-----------------------------------------------------
Q psy2748 253 REDGDKNMFVHGVNEIEVTTPDEAFQS----------------------------------------------------- 279 (690)
Q Consensus 253 red~~~~~~V~gl~~v~V~s~eea~~~----------------------------------------------------- 279 (690)
++|+.++++|.|++++.|.+.+|++.+
T Consensus 156 ~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lVDLAGS 235 (325)
T 1bg2_A 156 HEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGS 235 (325)
T ss_dssp EECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCS
T ss_pred EECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEEECCCC
Confidence 999999999999999999999999877
Q ss_pred ---------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHH
Q psy2748 280 ---------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYD 344 (690)
Q Consensus 280 ---------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ 344 (690)
+.+||+||++|++||.+|++++ .||||||||||+||||+||||++|+||+||+|+..+++
T Consensus 236 Er~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-----~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ 310 (325)
T 1bg2_A 236 EKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-----TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNES 310 (325)
T ss_dssp CCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTC-----SCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHH
T ss_pred CcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCC-----CCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHH
Confidence 5689999999999999999864 79999999999999999999999999999999999999
Q ss_pred HHhhHHHHHhhhhce
Q psy2748 345 ENLAVMKFAEMSQEV 359 (690)
Q Consensus 345 ETl~TLrFA~rak~I 359 (690)
||++||+||+||++|
T Consensus 311 ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 311 ETKSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999999986
No 12
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.3e-66 Score=563.41 Aligned_cols=259 Identities=29% Similarity=0.533 Sum_probs=224.2
Q ss_pred CCCCCCEEEEEEecCCCCCC----CCceEEEec---CcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhh
Q psy2748 19 NGSSDPLQVFCRIRPMDNSY----DESCISVVS---DTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVA 91 (690)
Q Consensus 19 ~~~~~~V~V~~RvRP~~~~e----~~~~i~v~~---~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~ 91 (690)
...+++|+|||||||+...| ...|+.+.+ +.+|.+ ..+.|+||+||+++++|++||+.++
T Consensus 7 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~-------------~~~~f~FD~Vf~~~~~Q~~Vy~~~~ 73 (365)
T 2y65_A 7 IPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI-------------AGKVYLFDKVFKPNASQEKVYNEAA 73 (365)
T ss_dssp -CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE-------------TTEEEECSEEECTTCCHHHHHHHHT
T ss_pred CCCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE-------------CCEEEeCceEecCCCCHHHHHHHhh
Confidence 34678899999999998654 223444433 233332 1357999999999999999999999
Q ss_pred HHHHHHHhccCCeEEEEecccCCCCeeecCCCCC---CCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHH
Q psy2748 92 HPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNS---DGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDIL 168 (690)
Q Consensus 92 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~---~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~l 168 (690)
.|+|+++++|||+||||||||||||||||+|... ++|||||++++||+.+...
T Consensus 74 ~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~------------------------ 129 (365)
T 2y65_A 74 KSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAM------------------------ 129 (365)
T ss_dssp HHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHC------------------------
T ss_pred hhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhc------------------------
Confidence 9999999999999999999999999999999754 4799999999999988651
Q ss_pred HHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccc
Q psy2748 169 LQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLN 248 (690)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~ 248 (690)
..+..|.|++||+|||||.|||||++.. .
T Consensus 130 ------------------------------------------~~~~~~~v~vS~~EIYnE~i~DLL~~~~---------~ 158 (365)
T 2y65_A 130 ------------------------------------------EVNLEFHIKVSYYEIYMDKIRDLLDVSK---------V 158 (365)
T ss_dssp ------------------------------------------CSCEEEEEEEEEEEEETTEEEETTCTTC---------C
T ss_pred ------------------------------------------cCCceEEEEEEEEEEECCeeeecccCCc---------C
Confidence 2345799999999999999999998644 3
Q ss_pred cceEeecCCCCeEEeeeEEEEecCchhhhhh-------------------------------------------------
Q psy2748 249 NRLIREDGDKNMFVHGVNEIEVTTPDEAFQS------------------------------------------------- 279 (690)
Q Consensus 249 ~~~ired~~~~~~V~gl~~v~V~s~eea~~~------------------------------------------------- 279 (690)
.+.+++|+.++++|.|++++.|.+.+|++.+
T Consensus 159 ~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVD 238 (365)
T 2y65_A 159 NLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVD 238 (365)
T ss_dssp SBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEE
T ss_pred CceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEEEEEE
Confidence 4679999999999999999999999999877
Q ss_pred -------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCC
Q psy2748 280 -------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340 (690)
Q Consensus 280 -------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~ 340 (690)
+.+||+||++||+||.+|++++ ..||||||||||+||||+||||++|+||+||+|+.
T Consensus 239 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~----~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~ 314 (365)
T 2y65_A 239 LAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGN----KTHIPYRDSKLTRILQESLGGNARTTIVICCSPAS 314 (365)
T ss_dssp CCCCCC----------------CCHHHHHHHHHHHHHHHCC----CSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBG
T ss_pred CCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCccccCHHHHHHHhhcCCCccEEEEEEecCcc
Confidence 6789999999999999999853 37999999999999999999999999999999999
Q ss_pred CCHHHHhhHHHHHhhhhceeeccCCCCcC
Q psy2748 341 EDYDENLAVMKFAEMSQEVQISKALPSRL 369 (690)
Q Consensus 341 ~~~~ETl~TLrFA~rak~I~~~~~v~~~~ 369 (690)
.+++||++||+||+||++|+|.+.+|...
T Consensus 315 ~~~~ETl~TL~fA~rak~I~n~~~~n~~~ 343 (365)
T 2y65_A 315 FNESETKSTLDFGRRAKTVKNVVCVNEEL 343 (365)
T ss_dssp GGHHHHHHHHHHHHHHTTCEEECCCEEEC
T ss_pred CCHHHHHHHHHHHHHHhcccCcceeCCCC
Confidence 99999999999999999999999988754
No 13
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=2.2e-66 Score=573.91 Aligned_cols=281 Identities=28% Similarity=0.464 Sum_probs=229.1
Q ss_pred CCCCCCCEEEEEEecCCCCCC---CCceEEEecC--cEEEEcCCCCCC---CC----cCCCcceEEEecEEeCC------
Q psy2748 18 NNGSSDPLQVFCRIRPMDNSY---DESCISVVSD--TTVQLTPPDGSN---PR----YFNNKEVQYVFKKIFNV------ 79 (690)
Q Consensus 18 ~~~~~~~V~V~~RvRP~~~~e---~~~~i~v~~~--~tv~l~~p~~~~---~r----~~~~~~~~f~Fd~VF~~------ 79 (690)
..+.+++|+|||||||+...| ...|+...++ ..+.+..|.... .+ ......+.|+||+||++
T Consensus 33 ~~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~ 112 (443)
T 2owm_A 33 SKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDE 112 (443)
T ss_dssp -CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTST
T ss_pred cCCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCc
Confidence 457789999999999998643 3334444332 355666554321 01 01134689999999976
Q ss_pred -CCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCc
Q psy2748 80 -DVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNG 158 (690)
Q Consensus 80 -~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~ 158 (690)
+++|++||+.++.|||+++++|||+||||||||||||||||+|++.++|||||++++||+.|...+.
T Consensus 113 ~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~------------ 180 (443)
T 2owm_A 113 HYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQD------------ 180 (443)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTT------------
T ss_pred cCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhc------------
Confidence 4899999999999999999999999999999999999999999999999999999999999876221
Q ss_pred ceehhHHHHHHHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCC
Q psy2748 159 FEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMP 238 (690)
Q Consensus 159 ~~i~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~ 238 (690)
...+..|.|+|||+|||||.|||||.+..
T Consensus 181 ---------------------------------------------------~~~~~~~~V~vS~lEIYnE~i~DLL~~~~ 209 (443)
T 2owm_A 181 ---------------------------------------------------ETPNISYNVKVSYFEVYNEHVRDLLAPVV 209 (443)
T ss_dssp ---------------------------------------------------TSTTCEEEEEEEEEEEETTEEEETTSCCC
T ss_pred ---------------------------------------------------ccCCceEEEEEEEEEEECCEeeEccCccc
Confidence 12356799999999999999999998743
Q ss_pred CCCccccccccceEeecCCCCeEEeeeEEEEecCchhhhhh---------------------------------------
Q psy2748 239 EGNNARIQLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQS--------------------------------------- 279 (690)
Q Consensus 239 ~~~~~~~~~~~~~ired~~~~~~V~gl~~v~V~s~eea~~~--------------------------------------- 279 (690)
.. .....+.++||+.+++||.|++++.|.+.+|++.+
T Consensus 210 ~~----~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~ 285 (443)
T 2owm_A 210 PN----KPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLET 285 (443)
T ss_dssp SS----CCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEEEEEEEC-----
T ss_pred cC----CcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEEEEEEeecccCC
Confidence 21 12245789999999999999999999999999876
Q ss_pred ---------------------------------ccccccccchHHHHHHHHhhhccc-----------------CCCCCC
Q psy2748 280 ---------------------------------IGNINNSLMTLRTCLEILRENQLQ-----------------GTNKIP 309 (690)
Q Consensus 280 ---------------------------------a~~IN~SL~aL~~cI~aL~~~q~~-----------------g~~~~V 309 (690)
+.+||+||++||+||.+|++++.. ....||
T Consensus 286 ~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hV 365 (443)
T 2owm_A 286 DDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVV 365 (443)
T ss_dssp --CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC-------------------------CC
T ss_pred CCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccccccccccccccCCCcc
Confidence 568999999999999999986532 123699
Q ss_pred CCCCchhhhcccccCCCCceeEEEEEeCCCCCCHHHHhhHHHHHhhhhceeeccCCCC
Q psy2748 310 PFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQISKALPS 367 (690)
Q Consensus 310 PYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl~TLrFA~rak~I~~~~~v~~ 367 (690)
||||||||+||||+||||++|+||+||+|+ +|+|||+||+||+||++|++.+.+|.
T Consensus 366 PYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~ 421 (443)
T 2owm_A 366 PYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQ 421 (443)
T ss_dssp CGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCC
T ss_pred cCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecc
Confidence 999999999999999999999999999995 69999999999999999999999886
No 14
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=2.2e-66 Score=561.12 Aligned_cols=266 Identities=28% Similarity=0.472 Sum_probs=221.9
Q ss_pred CCCCCCEEEEEEecCCCCCC----CCceEEEecC-cEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHH
Q psy2748 19 NGSSDPLQVFCRIRPMDNSY----DESCISVVSD-TTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHP 93 (690)
Q Consensus 19 ~~~~~~V~V~~RvRP~~~~e----~~~~i~v~~~-~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~p 93 (690)
.+..++|+|+|||||+...| ...|+.+.+. .+|.+..+... .....+.|+||+||+++++|++||+.++.|
T Consensus 4 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~----~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~p 79 (359)
T 1x88_A 4 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLA----DKSSRKTYTFDMVFGASTKQIDVYRSVVCP 79 (359)
T ss_dssp -----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEET----TEEEEEEEECSEEECTTCCHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCcc----CCcCceEEeceEEEeccCchhHHHHHHHHH
Confidence 45678999999999998643 3345655543 46666432110 112467899999999999999999999999
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeecCCCCC-----------CCChHHHHHHHHHHHhcccCCCCccccCCCCCcceeh
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTMNGTNS-----------DGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQ 162 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~-----------~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~ 162 (690)
+|+++++|||+||||||||||||||||+|+.. .+|||||++++||+.+..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~------------------- 140 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD------------------- 140 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS-------------------
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc-------------------
Confidence 99999999999999999999999999999764 369999999999998754
Q ss_pred hHHHHHHHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCc
Q psy2748 163 SQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNN 242 (690)
Q Consensus 163 ~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~ 242 (690)
.+..|.|++||+|||||.|||||.+....
T Consensus 141 -------------------------------------------------~~~~~~v~vS~~EIYnE~i~DLL~~~~~~-- 169 (359)
T 1x88_A 141 -------------------------------------------------NGTEFSVKVSLLEIYNEELFDLLNPSSDV-- 169 (359)
T ss_dssp -------------------------------------------------SSEEEEEEEEEEEEETTEEEETTCTTSCT--
T ss_pred -------------------------------------------------cCceEEEEEEEEEEeCceeeehhcccccc--
Confidence 23469999999999999999999875421
Q ss_pred cccccccceEeecCC--CCeEEeeeEEEEecCchhhhhh-----------------------------------------
Q psy2748 243 ARIQLNNRLIREDGD--KNMFVHGVNEIEVTTPDEAFQS----------------------------------------- 279 (690)
Q Consensus 243 ~~~~~~~~~ired~~--~~~~V~gl~~v~V~s~eea~~~----------------------------------------- 279 (690)
...+.+++|+. ++++|.|++++.|.+.+|++.+
T Consensus 170 ----~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~ 245 (359)
T 1x88_A 170 ----SERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 245 (359)
T ss_dssp ----TCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSCE
T ss_pred ----cccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCCCc
Confidence 13456888874 7899999999999999999877
Q ss_pred ------------------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCce
Q psy2748 280 ------------------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGD 329 (690)
Q Consensus 280 ------------------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnsk 329 (690)
+++||+||++||+||.+|.+++ .||||||||||+||||+||||++
T Consensus 246 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-----~hvPyRdSkLT~lLqdsLgGnsk 320 (359)
T 1x88_A 246 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERT-----PHVPYRESKLTRILQDSLGGRTR 320 (359)
T ss_dssp EEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTC-----SCCCGGGSHHHHHTGGGSSSSSE
T ss_pred eEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCC-----CCCccccchHHHHHHHHhCCCCe
Confidence 5789999999999999999864 79999999999999999999999
Q ss_pred eEEEEEeCCCCCCHHHHhhHHHHHhhhhceeeccCCCC
Q psy2748 330 VRMIVCVNPRVEDYDENLAVMKFAEMSQEVQISKALPS 367 (690)
Q Consensus 330 t~mIvcVsP~~~~~~ETl~TLrFA~rak~I~~~~~v~~ 367 (690)
|+||+||+|+..+++||++||+||.||++|+|.|.+|.
T Consensus 321 t~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 321 TSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp EEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred EEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 99999999999999999999999999999999998874
No 15
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=9.2e-66 Score=550.45 Aligned_cols=254 Identities=34% Similarity=0.550 Sum_probs=213.9
Q ss_pred CCCCCEEEEEEecCCCCCCCC-----ceEEEe--cCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhH
Q psy2748 20 GSSDPLQVFCRIRPMDNSYDE-----SCISVV--SDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAH 92 (690)
Q Consensus 20 ~~~~~V~V~~RvRP~~~~e~~-----~~i~v~--~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~ 92 (690)
+.+++|+|+|||||+...|.+ .++.+. ++..+.+.. ......|.||+||+++++|++||+.+ .
T Consensus 1 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~ 70 (330)
T 2h58_A 1 GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLH---------KGKPVSFELDKVFSPQASQQDVFQEV-Q 70 (330)
T ss_dssp ----CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEE---------TTEEEEEECSEEECTTCCHHHHHTTT-H
T ss_pred CCCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcC---------CCCeeEEecCeEeCCCCCcHhHHHHH-H
Confidence 357899999999999876532 344442 223333322 12467899999999999999999986 8
Q ss_pred HHHHHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHH
Q psy2748 93 PLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQ 172 (690)
Q Consensus 93 plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~ 172 (690)
|+|+++++|||+||||||||||||||||+|++.++|||||++++||+.++..
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~---------------------------- 122 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEK---------------------------- 122 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTS----------------------------
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcc----------------------------
Confidence 9999999999999999999999999999999999999999999999988651
Q ss_pred HHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceE
Q psy2748 173 AEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLI 252 (690)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~i 252 (690)
..+..|.|++||+|||||.|||||.+.... .....+
T Consensus 123 --------------------------------------~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~------~l~i~~ 158 (330)
T 2h58_A 123 --------------------------------------ASDWEYTITVSAAEIYNEVLRDLLGKEPQE------KLEIRL 158 (330)
T ss_dssp --------------------------------------CTTEEEEEEEEEEEEETTEEEETTSCSSCC------CCCCEE
T ss_pred --------------------------------------cCCceEEEEEEEEEEECCChhhcccccccc------cceEEE
Confidence 134579999999999999999999865421 112345
Q ss_pred eecCCCCeEEeeeEEEEecCchhhhhh-----------------------------------------------------
Q psy2748 253 REDGDKNMFVHGVNEIEVTTPDEAFQS----------------------------------------------------- 279 (690)
Q Consensus 253 red~~~~~~V~gl~~v~V~s~eea~~~----------------------------------------------------- 279 (690)
++|+.++++|.|++++.|.+.+|++.+
T Consensus 159 ~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGS 238 (330)
T 2h58_A 159 CPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGS 238 (330)
T ss_dssp CTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEEEECCCC
T ss_pred eecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEEEeCCCC
Confidence 578899999999999999999999887
Q ss_pred ---------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHH
Q psy2748 280 ---------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYD 344 (690)
Q Consensus 280 ---------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ 344 (690)
+.+||+||++|++||.+|++++ .||||||||||+||||+||||++|+||+||+|+..+++
T Consensus 239 Er~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~-----~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ 313 (330)
T 2h58_A 239 ERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQ-----GHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTS 313 (330)
T ss_dssp CCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTC-----SCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHH
T ss_pred CcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCC-----CCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHH
Confidence 5689999999999999998865 79999999999999999999999999999999999999
Q ss_pred HHhhHHHHHhhhhcee
Q psy2748 345 ENLAVMKFAEMSQEVQ 360 (690)
Q Consensus 345 ETl~TLrFA~rak~I~ 360 (690)
||++||+||+||++|+
T Consensus 314 ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 314 ETLYSLKFAERVRSVE 329 (330)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhhCc
Confidence 9999999999999986
No 16
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=5.1e-66 Score=557.29 Aligned_cols=264 Identities=30% Similarity=0.493 Sum_probs=214.2
Q ss_pred CEEEEEEecCCCCCC---CCceEEEecCcEEEEcCCCCC-CCCcCCCcceEEEecEEe--------CCCCChHHHHHHhh
Q psy2748 24 PLQVFCRIRPMDNSY---DESCISVVSDTTVQLTPPDGS-NPRYFNNKEVQYVFKKIF--------NVDVGQKQVYSEVA 91 (690)
Q Consensus 24 ~V~V~~RvRP~~~~e---~~~~i~v~~~~tv~l~~p~~~-~~r~~~~~~~~f~Fd~VF--------~~~asQ~evF~~v~ 91 (690)
+|+|+|||||++..| ...|+...+++++.+.++... .........+.|+||+|| ++.++|++||+.++
T Consensus 2 ~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~ 81 (354)
T 3gbj_A 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLG 81 (354)
T ss_dssp CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHH
T ss_pred CcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHhh
Confidence 699999999998654 345666667778888776543 112223457889999999 45689999999999
Q ss_pred HHHHHHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHH
Q psy2748 92 HPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQE 171 (690)
Q Consensus 92 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~ 171 (690)
.|+|+++++|||+||||||||||||||||+|+..++|||||++++||+.+...
T Consensus 82 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~--------------------------- 134 (354)
T 3gbj_A 82 ENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKE--------------------------- 134 (354)
T ss_dssp HHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhh---------------------------
Confidence 99999999999999999999999999999999999999999999999988641
Q ss_pred HHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccce
Q psy2748 172 QAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRL 251 (690)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ 251 (690)
.+.+..|.|+|||+|||||.|||||++... ...+.
T Consensus 135 --------------------------------------~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~-------~~~l~ 169 (354)
T 3gbj_A 135 --------------------------------------ENEEQSFKVEVSYMEIYNEKVRDLLDPKGS-------RQTLK 169 (354)
T ss_dssp --------------------------------------CBTTEEEEEEEEEEEEETTEEEETTC-------------CBC
T ss_pred --------------------------------------cccccceeeeceeEEEecCeeeEccCCCCC-------CcceE
Confidence 123457999999999999999999987542 13567
Q ss_pred EeecCCCCeEEeeeEEEEecCchhhhhh----------------------------------------------------
Q psy2748 252 IREDGDKNMFVHGVNEIEVTTPDEAFQS---------------------------------------------------- 279 (690)
Q Consensus 252 ired~~~~~~V~gl~~v~V~s~eea~~~---------------------------------------------------- 279 (690)
++|++..+++|.|++++.|.+.+|++.+
T Consensus 170 i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~lV 249 (354)
T 3gbj_A 170 VREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLV 249 (354)
T ss_dssp BC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred EEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCCeeEEEEEEE
Confidence 8999999999999999999999999887
Q ss_pred --------------------ccccccccchHHHHHHHHhhhccc-CCCCCCCCCCchhhhcccccCCCCceeEEEEEeCC
Q psy2748 280 --------------------IGNINNSLMTLRTCLEILRENQLQ-GTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNP 338 (690)
Q Consensus 280 --------------------a~~IN~SL~aL~~cI~aL~~~q~~-g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP 338 (690)
+.+||+||++||+||.+|++++.. ++..||||||||||+||||+||||++|+||+||||
T Consensus 250 DLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP 329 (354)
T 3gbj_A 250 DLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSP 329 (354)
T ss_dssp ECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCEEEEEEEECC
T ss_pred ECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCeEEEEEEeCC
Confidence 567999999999999999986532 34589999999999999999999999999999999
Q ss_pred CCCCHHHHhhHHHHHhhhhce
Q psy2748 339 RVEDYDENLAVMKFAEMSQEV 359 (690)
Q Consensus 339 ~~~~~~ETl~TLrFA~rak~I 359 (690)
+..+|+|||+||+||.+|+.-
T Consensus 330 ~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 330 AADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp BGGGHHHHHHHHHHHHHHC--
T ss_pred CcchHHHHHHHHHHHHHhhhc
Confidence 999999999999999999853
No 17
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=3e-65 Score=549.91 Aligned_cols=251 Identities=32% Similarity=0.542 Sum_probs=218.3
Q ss_pred CCCCCCEEEEEEecCCCCCC----CCceEEEecCc-EEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHH
Q psy2748 19 NGSSDPLQVFCRIRPMDNSY----DESCISVVSDT-TVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHP 93 (690)
Q Consensus 19 ~~~~~~V~V~~RvRP~~~~e----~~~~i~v~~~~-tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~p 93 (690)
....++|+|+|||||+...| ...|+.+.++. .+.+. ..+.|.||+||+++++|++||+.++.|
T Consensus 7 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~------------~~~~f~FD~Vf~~~~~Q~~vy~~~~~p 74 (344)
T 4a14_A 7 GAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG------------RDRHFGFHVVLAEDAGQEAVYQACVQP 74 (344)
T ss_dssp --CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET------------TTEEEECSEEECTTCCHHHHHHHHTHH
T ss_pred CccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEec------------ccceEEEEEEEecCcchhHHHHHHHHH
Confidence 34578999999999998654 46788776654 33331 246899999999999999999999999
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeecCCCC------CCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHH
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTMNGTN------SDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDI 167 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~------~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ 167 (690)
+|+++++|||+||||||||||||||||+|.. .++|||||++++||+.++..
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~----------------------- 131 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEN----------------------- 131 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccc-----------------------
Confidence 9999999999999999999999999999974 67999999999999988651
Q ss_pred HHHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCcccccc
Q psy2748 168 LLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQL 247 (690)
Q Consensus 168 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~ 247 (690)
....|.|++||+|||||.|||||++... .
T Consensus 132 --------------------------------------------~~~~~~v~vS~~EIYnE~i~DLL~~~~~-------~ 160 (344)
T 4a14_A 132 --------------------------------------------DLLDCLVHVSYLEVYKEEFRDLLEVGTA-------S 160 (344)
T ss_dssp --------------------------------------------TTSEEEEEEEEEEEETTEEEETTSSCCC-------G
T ss_pred --------------------------------------------cceeeEEEEehhhhhHHHHHHHHHhccc-------c
Confidence 2346899999999999999999986442 1
Q ss_pred ccceEeecCCCCeEEeeeEEEEecCchhhhhh------------------------------------------------
Q psy2748 248 NNRLIREDGDKNMFVHGVNEIEVTTPDEAFQS------------------------------------------------ 279 (690)
Q Consensus 248 ~~~~ired~~~~~~V~gl~~v~V~s~eea~~~------------------------------------------------ 279 (690)
..+.+++|..++++|.|++++.|.+.+|++.+
T Consensus 161 ~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~ 240 (344)
T 4a14_A 161 RDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQL 240 (344)
T ss_dssp GGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CE
T ss_pred ccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccce
Confidence 45679999999999999999999999999877
Q ss_pred ----------------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeE
Q psy2748 280 ----------------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVR 331 (690)
Q Consensus 280 ----------------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~ 331 (690)
+.+||+||++|++||.+|++++. +..||||||||||+||||+||||++|+
T Consensus 241 ~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~--~~~hvPyRdSkLT~lLqdsLgGnskt~ 318 (344)
T 4a14_A 241 LVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQR--RGSHIPYRDSKITRILKDSLGGNAKTV 318 (344)
T ss_dssp EEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTT--TTSCCCGGGCHHHHHTTTSSSTTSEEE
T ss_pred eeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccc--cCCCCCcchhhHHHHhHhhcCCCcceE
Confidence 56799999999999999988653 347999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHhhHHHHHhhhh
Q psy2748 332 MIVCVNPRVEDYDENLAVMKFAEMSQ 357 (690)
Q Consensus 332 mIvcVsP~~~~~~ETl~TLrFA~rak 357 (690)
||+||+|+..+|+||++||+||+|||
T Consensus 319 mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 319 MIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999999999999996
No 18
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=2.8e-65 Score=551.58 Aligned_cols=265 Identities=26% Similarity=0.463 Sum_probs=219.4
Q ss_pred CCCCCCCEEEEEEecCCCCCCCCceEEEe-cCcEEEEcCCCCCC--CCcCCCcceEEEecEEeCCCCChHHHHHHhhHHH
Q psy2748 18 NNGSSDPLQVFCRIRPMDNSYDESCISVV-SDTTVQLTPPDGSN--PRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPL 94 (690)
Q Consensus 18 ~~~~~~~V~V~~RvRP~~~~e~~~~i~v~-~~~tv~l~~p~~~~--~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~pl 94 (690)
+.+.+++|+|||||||+...+ ..++.+. ++.+|.+..+.... .-+.......|+||+||+ +++|++||+.++.|+
T Consensus 18 ~~~~~g~IrV~vRvRP~~~~~-~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~~l 95 (358)
T 2nr8_A 18 GSGTRKKVHAFVRVKPTDDFA-HEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDV 95 (358)
T ss_dssp -----CCEEEEEEECCCSSCC-TTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHH
T ss_pred CCCCCCCeEEEEEcCCCCCCc-cceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHHHHH
Confidence 357799999999999987543 3455554 56788888776531 112234567899999995 899999999999999
Q ss_pred HHHHhccCCeEEEEecccCCCCeeecCCCCCC---CChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHH
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTMNGTNSD---GGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQE 171 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~---~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~ 171 (690)
|+++++|||+||||||||||||||||+|+..+ +|||||++++||+.++..
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~--------------------------- 148 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEER--------------------------- 148 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTC---------------------------
T ss_pred HHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhc---------------------------
Confidence 99999999999999999999999999998765 899999999999988651
Q ss_pred HHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccce
Q psy2748 172 QAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRL 251 (690)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ 251 (690)
.+..|.|++||+|||||.|||||++....++ ....+.
T Consensus 149 ----------------------------------------~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~---~~~~l~ 185 (358)
T 2nr8_A 149 ----------------------------------------PTHAITVRVSYLEIYNESLFDLLSTLPYVGP---SVTPMT 185 (358)
T ss_dssp ----------------------------------------TTSCEEEEEEEEEEETTEEEETTSSSTTSCT---TTSCCE
T ss_pred ----------------------------------------CCceEEEEEEEEEEeCCeeeECcCCccccCc---cCCceE
Confidence 2335899999999999999999987543211 224567
Q ss_pred EeecCCCCeEEeeeEEEEecCchhhhhh----------------------------------------------------
Q psy2748 252 IREDGDKNMFVHGVNEIEVTTPDEAFQS---------------------------------------------------- 279 (690)
Q Consensus 252 ired~~~~~~V~gl~~v~V~s~eea~~~---------------------------------------------------- 279 (690)
+++++ .+++|.|++++.|.+.+|++.+
T Consensus 186 i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDL 264 (358)
T 2nr8_A 186 IVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDL 264 (358)
T ss_dssp EEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEEEEEEEEEC
T ss_pred EEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCCCCCEEEEEEEEEEC
Confidence 88998 6799999999999999999876
Q ss_pred ------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCC
Q psy2748 280 ------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVE 341 (690)
Q Consensus 280 ------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~ 341 (690)
+.+||+||++|++||.+|++++ ..||||||||||+||||+||||++|+||+||+|+..
T Consensus 265 AGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~----~~hiPyRdSkLT~LLqdsLgGnskt~mIa~isP~~~ 340 (358)
T 2nr8_A 265 AGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQK----RDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAA 340 (358)
T ss_dssp CCCC----------------CCSTHHHHHHHHHHHHHC---------CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGG
T ss_pred CCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCC----CCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCchh
Confidence 5789999999999999998743 369999999999999999999999999999999999
Q ss_pred CHHHHhhHHHHHhhhhce
Q psy2748 342 DYDENLAVMKFAEMSQEV 359 (690)
Q Consensus 342 ~~~ETl~TLrFA~rak~I 359 (690)
+|+|||+||+||+||+.|
T Consensus 341 ~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 341 QLEETLSSLRFASRMKLV 358 (358)
T ss_dssp GHHHHHHHHHHHTTGGGC
T ss_pred hHHHHHHHHHHHHHhccC
Confidence 999999999999999986
No 19
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=1.3e-65 Score=557.64 Aligned_cols=262 Identities=26% Similarity=0.414 Sum_probs=221.3
Q ss_pred CCCCEEEEEEecCCCCCC----CCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHH
Q psy2748 21 SSDPLQVFCRIRPMDNSY----DESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVA 96 (690)
Q Consensus 21 ~~~~V~V~~RvRP~~~~e----~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~ 96 (690)
..++|+|+|||||+...| ...|+.+.++.++.++.|............+.|+||+||+++++|++||+.++.|||+
T Consensus 49 ~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~ 128 (387)
T 2heh_A 49 EEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ 128 (387)
T ss_dssp CCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHH
Confidence 388999999999998654 3457777778888887665431111112457899999999999999999999999999
Q ss_pred HHhccCCeEEEEecccCCCCeeecCCCC------CCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHH
Q psy2748 97 NLIHAKNGLLLTYGVTGSGKTYTMNGTN------SDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQ 170 (690)
Q Consensus 97 ~~l~G~N~~IfaYGqTGSGKTyTm~G~~------~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~ 170 (690)
++++|||+||||||||||||||||+|+. .++|||||++++||..+....
T Consensus 129 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~------------------------- 183 (387)
T 2heh_A 129 TIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPC------------------------- 183 (387)
T ss_dssp HHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHH-------------------------
T ss_pred HHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhccc-------------------------
Confidence 9999999999999999999999999963 468999999999999886410
Q ss_pred HHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccc
Q psy2748 171 EQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNR 250 (690)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~ 250 (690)
..+..|.|++||+|||||.|||||.+.. .+
T Consensus 184 ----------------------------------------~~~~~~~V~vS~~EIYnE~v~DLL~~~~----------~l 213 (387)
T 2heh_A 184 ----------------------------------------YRKLGLEVYVTFFEIYNGKLFDLLNKKA----------KL 213 (387)
T ss_dssp ----------------------------------------HHTTTCEEEEEEEEEETTEEEETTTTTE----------EC
T ss_pred ----------------------------------------ccCceEEEEEEEEEecCCeEEECCCCCc----------cc
Confidence 1133588999999999999999997532 45
Q ss_pred eEeecCCCCeEEeeeEEEEecCchhhhhh---------------------------------------------------
Q psy2748 251 LIREDGDKNMFVHGVNEIEVTTPDEAFQS--------------------------------------------------- 279 (690)
Q Consensus 251 ~ired~~~~~~V~gl~~v~V~s~eea~~~--------------------------------------------------- 279 (690)
.++||+.++++|.|++++.|.+.+|++.+
T Consensus 214 ~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~skL~lVDLAGSER~ 293 (387)
T 2heh_A 214 RVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHGKFSLVDLAGNERG 293 (387)
T ss_dssp EEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESSSSEEEEEEEEECCCCC--
T ss_pred eEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEECCeeeeEEEEEECCCCccc
Confidence 78999999999999999999999999887
Q ss_pred -------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhccccc-CCCCceeEEEEEeCCCCCCHHH
Q psy2748 280 -------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSY-FTGDGDVRMIVCVNPRVEDYDE 345 (690)
Q Consensus 280 -------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkds-LgGnskt~mIvcVsP~~~~~~E 345 (690)
+.+||+||++|++||.+|++++ .||||||||||+||||+ ||||++|+||+||+|+..+++|
T Consensus 294 ~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~-----~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP~~~~~~E 368 (387)
T 2heh_A 294 ADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-----AHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEY 368 (387)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHTTC-----SCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECCBGGGHHH
T ss_pred cccccccccchhhHHHHhHHHHHHHHHHHHHhcCC-----CCCCccccHHHHHHhhhccCCCCeEEEEEEeCCccchHHH
Confidence 4579999999999999998754 79999999999999999 5999999999999999999999
Q ss_pred HhhHHHHHhhhhceeec
Q psy2748 346 NLAVMKFAEMSQEVQIS 362 (690)
Q Consensus 346 Tl~TLrFA~rak~I~~~ 362 (690)
||+||+||+||++|++.
T Consensus 369 TlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 369 TLNTLRYADRVKELSPH 385 (387)
T ss_dssp HHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhccCcCC
Confidence 99999999999999863
No 20
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=5.5e-66 Score=566.04 Aligned_cols=274 Identities=29% Similarity=0.497 Sum_probs=230.8
Q ss_pred CcccCCCCCCCCCCEEEEEEecCCCCCCC--Cce-EEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHH
Q psy2748 11 RKVAFSQNNGSSDPLQVFCRIRPMDNSYD--ESC-ISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVY 87 (690)
Q Consensus 11 ~~~~~~~~~~~~~~V~V~~RvRP~~~~e~--~~~-i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF 87 (690)
||.+++..++.+|+|+|||||||+...+. ..| +...++.+|.+..+..... .......|+||+||+++++|++||
T Consensus 47 rr~l~n~~~~l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~F~FD~VF~~~~~Q~~Vf 124 (412)
T 3u06_A 47 RKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAK--SKMGQQIFSFDQVFHPLSSQSDIF 124 (412)
T ss_dssp HHHHHHHHHHHTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC---------CCCEEECSEEECTTCCHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccc--cccCceEEeeCeEcCCCCCHHHHH
Confidence 45567777888999999999999976553 233 4556778888876554311 112356899999999999999999
Q ss_pred HHhhHHHHHHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHH
Q psy2748 88 SEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDI 167 (690)
Q Consensus 88 ~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ 167 (690)
+.+ .|+|+++++|||+||||||||||||||||+|.+.++|||||++++||+.|....
T Consensus 125 ~~v-~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~---------------------- 181 (412)
T 3u06_A 125 EMV-SPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYR---------------------- 181 (412)
T ss_dssp TTT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHG----------------------
T ss_pred HHH-HHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhc----------------------
Confidence 965 699999999999999999999999999999999999999999999999987521
Q ss_pred HHHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCcccccc
Q psy2748 168 LLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQL 247 (690)
Q Consensus 168 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~ 247 (690)
+.+..|.|++||+|||||.|||||.+....
T Consensus 182 -------------------------------------------~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~------- 211 (412)
T 3u06_A 182 -------------------------------------------NLGWEYEIKATFLEIYNEVLYDLLSNEQKD------- 211 (412)
T ss_dssp -------------------------------------------GGTEEEEEEEEEEEEETTEEEETTCCSCCC-------
T ss_pred -------------------------------------------ccCceEEEEEEEEEEeCCeeEEcCCCCCCC-------
Confidence 124579999999999999999999764421
Q ss_pred ccceEeecCCCCeEEeeeEEEEecCchhhhhh------------------------------------------------
Q psy2748 248 NNRLIREDGDKNMFVHGVNEIEVTTPDEAFQS------------------------------------------------ 279 (690)
Q Consensus 248 ~~~~ired~~~~~~V~gl~~v~V~s~eea~~~------------------------------------------------ 279 (690)
....+.+++.+++||.|++++.|.+.+|++.+
T Consensus 212 ~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lV 291 (412)
T 3u06_A 212 MEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLV 291 (412)
T ss_dssp CCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred ceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCCCCEEEEEEEEE
Confidence 22345578889999999999999999999887
Q ss_pred ----------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCH
Q psy2748 280 ----------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDY 343 (690)
Q Consensus 280 ----------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~ 343 (690)
+.+||+||++||+||.+|++++ .||||||||||+||||+||||++|+|||||||+..+|
T Consensus 292 DLAGSEr~~~~~rl~E~~~INkSL~aLg~vI~aL~~~~-----~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~ 366 (412)
T 3u06_A 292 DLAGSESPKTSTRMTETKNINRSLSELTNVILALLQKQ-----DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCF 366 (412)
T ss_dssp ECCCCCC----------CTTTHHHHHHHHHHHHHHTTC-----SCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGH
T ss_pred ECCCCCcCCccchhHhHHHHhHHHHHHHHHHHHHhccC-----CCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhH
Confidence 6789999999999999999865 7999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHhhhhceeeccC
Q psy2748 344 DENLAVMKFAEMSQEVQISKA 364 (690)
Q Consensus 344 ~ETl~TLrFA~rak~I~~~~~ 364 (690)
+||++||+||++++.|+..+.
T Consensus 367 ~ETl~TLrfA~rv~~i~~~~~ 387 (412)
T 3u06_A 367 QESVKSLRFAASVNSCKMTKA 387 (412)
T ss_dssp HHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhcccccc
Confidence 999999999999999986543
No 21
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.1e-65 Score=553.11 Aligned_cols=272 Identities=28% Similarity=0.420 Sum_probs=207.1
Q ss_pred ccCCCCCCCCCCEEEEEEecCCCCCCCCc---eEEE--------ecCcEEEEcCCCCCC---CC-cCCCcceEEEecEEe
Q psy2748 13 VAFSQNNGSSDPLQVFCRIRPMDNSYDES---CISV--------VSDTTVQLTPPDGSN---PR-YFNNKEVQYVFKKIF 77 (690)
Q Consensus 13 ~~~~~~~~~~~~V~V~~RvRP~~~~e~~~---~i~v--------~~~~tv~l~~p~~~~---~r-~~~~~~~~f~Fd~VF 77 (690)
.+++..++.+++|+|||||||+...|... |+.+ .++.+|.+..|.... .+ ......+.|+||+||
T Consensus 12 ~~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf 91 (376)
T 2rep_A 12 SGLVPRGSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVF 91 (376)
T ss_dssp -----------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEE
T ss_pred cccchhhccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEc
Confidence 45788889999999999999998776432 3332 345678777654321 11 112345689999999
Q ss_pred CCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCCCCC----CCChHHHHHHHHHHHhcccCCCCccccC
Q psy2748 78 NVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNS----DGGIMMRCIDVLFNSIGRYQPRKRTFRP 153 (690)
Q Consensus 78 ~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~----~~GIiPR~l~~LF~~i~~~~~~~~~~~p 153 (690)
+++++|++||+.++ |+|+++++|||+||||||||||||||||+|... ++|||||++++||+.++...
T Consensus 92 ~~~~~Q~~Vy~~v~-~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~-------- 162 (376)
T 2rep_A 92 PPGSGQDEVFEEIA-MLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELS-------- 162 (376)
T ss_dssp CTTCCHHHHHHHHH-HHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGG--------
T ss_pred CCcccchhhhhhHH-HHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhh--------
Confidence 99999999999975 899999999999999999999999999999754 68999999999999886521
Q ss_pred CCCCcceehhHHHHHHHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeec
Q psy2748 154 DKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDL 233 (690)
Q Consensus 154 ~~~~~~~i~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DL 233 (690)
+.+..|.|++||+|||||.||||
T Consensus 163 ---------------------------------------------------------~~~~~~~v~vS~~EIYnE~i~DL 185 (376)
T 2rep_A 163 ---------------------------------------------------------GQGWTYSFVASYVEIYNETVRDL 185 (376)
T ss_dssp ---------------------------------------------------------GGTEEEEEEEEEEEEETTEEEET
T ss_pred ---------------------------------------------------------cCCeEEEEEEEEEEEECCEeeEc
Confidence 13457999999999999999999
Q ss_pred ccCCCCCCccccccccceEeec--CCCCeEEeeeEEEEecCchhhhhh--------------------------------
Q psy2748 234 LEDMPEGNNARIQLNNRLIRED--GDKNMFVHGVNEIEVTTPDEAFQS-------------------------------- 279 (690)
Q Consensus 234 L~~~~~~~~~~~~~~~~~ired--~~~~~~V~gl~~v~V~s~eea~~~-------------------------------- 279 (690)
|.+.... .....+.++++ +.++++|.|++++.|.+.+|++.+
T Consensus 186 L~~~~~~----~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~ 261 (376)
T 2rep_A 186 LATGTRK----GQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISG 261 (376)
T ss_dssp TCCC------------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEEEEEEE
T ss_pred ccccccc----ccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEE
Confidence 9875311 01123557777 678999999999999999999877
Q ss_pred ----------------------------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhc
Q psy2748 280 ----------------------------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHL 319 (690)
Q Consensus 280 ----------------------------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~L 319 (690)
+.+||+||++|++||.+|++++ .||||||||||+|
T Consensus 262 ~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~-----~hVPYRdSkLT~L 336 (376)
T 2rep_A 262 EHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKE-----SHVPYRNSKLTYL 336 (376)
T ss_dssp EESSSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTC-----SCCCGGGSHHHHH
T ss_pred EecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCC-----CccCCcCCHHHHH
Confidence 3479999999999999999864 7999999999999
Q ss_pred ccccCCCCceeEEEEEeCCCCCCHHHHhhHHHHHhhhhce
Q psy2748 320 FKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEV 359 (690)
Q Consensus 320 LkdsLgGnskt~mIvcVsP~~~~~~ETl~TLrFA~rak~I 359 (690)
|||+||||++|+||+||+|+..+|+|||+||+||.|++++
T Consensus 337 LqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 337 LQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp TGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999864
No 22
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=7.4e-66 Score=556.42 Aligned_cols=263 Identities=27% Similarity=0.457 Sum_probs=215.1
Q ss_pred CEEEEEEecCCCCCC----CCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHHHHh
Q psy2748 24 PLQVFCRIRPMDNSY----DESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLI 99 (690)
Q Consensus 24 ~V~V~~RvRP~~~~e----~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~~~l 99 (690)
.|+|||||||+...| ...|+.+.++.+|.+..|..............|.||+||+++++|++||+.++.|+|++++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 489999999998654 4568888888999888765421111112356899999999999999999999999999999
Q ss_pred c-cCCeEEEEecccCCCCeeecCCCC-----CCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHHH
Q psy2748 100 H-AKNGLLLTYGVTGSGKTYTMNGTN-----SDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQA 173 (690)
Q Consensus 100 ~-G~N~~IfaYGqTGSGKTyTm~G~~-----~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~~ 173 (690)
+ |||+||||||||||||||||+|+. .++|||||++++||..++..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~----------------------------- 131 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIY----------------------------- 131 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHH-----------------------------
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhh-----------------------------
Confidence 5 999999999999999999999974 57999999999999988652
Q ss_pred HhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceEe
Q psy2748 174 EMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIR 253 (690)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~ir 253 (690)
+.+..|.|++||+|||||.|||||.+.. .+.++
T Consensus 132 -------------------------------------~~~~~~~v~vS~~EIYnE~v~DLL~~~~----------~~~~~ 164 (360)
T 1ry6_A 132 -------------------------------------DKDNTKGIFISFYEIYCGKLYDLLQKRK----------MVAAL 164 (360)
T ss_dssp -------------------------------------CSSSCEEEEEEEEEEETTEEEESCCC-----------------
T ss_pred -------------------------------------ccCCceEEEEEEEEeeCCeeEEcccCCc----------cceee
Confidence 1234689999999999999999997543 23467
Q ss_pred ecCCCCeEEeeeEEEEecCchhhhhh------------------------------------------------------
Q psy2748 254 EDGDKNMFVHGVNEIEVTTPDEAFQS------------------------------------------------------ 279 (690)
Q Consensus 254 ed~~~~~~V~gl~~v~V~s~eea~~~------------------------------------------------------ 279 (690)
+++.++++|.|++++.|.+.+|++.+
T Consensus 165 e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~skL~lVDLAGSEr~~ 244 (360)
T 1ry6_A 165 ENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINKNTSLGKIAFIDLAGSERGA 244 (360)
T ss_dssp ----CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETTTTEEEEEEEEEECCCTTGGG
T ss_pred EcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEeccCCcceeEEEEEECCCCcccc
Confidence 89999999999999999999999876
Q ss_pred ------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHHHHh
Q psy2748 280 ------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENL 347 (690)
Q Consensus 280 ------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl 347 (690)
+.+||+||++||+||.+|.+++ .||||||||||+||||+||||++|+||+||+|+..+++|||
T Consensus 245 ~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~-----~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl 319 (360)
T 1ry6_A 245 DTVSQNKQTQTDGANINRSLLALKECIRAMDSDK-----NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTL 319 (360)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTST-----TSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHhcCC-----CCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcccHHHHH
Confidence 4579999999999999997754 79999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhceeeccCCCC
Q psy2748 348 AVMKFAEMSQEVQISKALPS 367 (690)
Q Consensus 348 ~TLrFA~rak~I~~~~~v~~ 367 (690)
+||+||+||++|++.+..+.
T Consensus 320 sTLrfA~rak~i~n~~~~~~ 339 (360)
T 1ry6_A 320 NTLRYSSRVKNKGNSKLEGK 339 (360)
T ss_dssp HHHHHHHHHCC---------
T ss_pred HHHHHHHHHhhcccCcccCC
Confidence 99999999999999766443
No 23
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=3.5e-65 Score=557.37 Aligned_cols=263 Identities=27% Similarity=0.416 Sum_probs=221.1
Q ss_pred CCCCEEEEEEecCCCCCC----CCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhHHHHH
Q psy2748 21 SSDPLQVFCRIRPMDNSY----DESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVA 96 (690)
Q Consensus 21 ~~~~V~V~~RvRP~~~~e----~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~plV~ 96 (690)
..++|+|||||||+...| ...|+.+.++.++.++.|..............|+||+||+++++|++||+.++.|||+
T Consensus 69 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~ 148 (410)
T 1v8k_A 69 EEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ 148 (410)
T ss_dssp SCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHH
Confidence 378999999999998653 3457777778888887665431111112357899999999999999999999999999
Q ss_pred HHhccCCeEEEEecccCCCCeeecCCCC------CCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHH
Q psy2748 97 NLIHAKNGLLLTYGVTGSGKTYTMNGTN------SDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQ 170 (690)
Q Consensus 97 ~~l~G~N~~IfaYGqTGSGKTyTm~G~~------~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~ 170 (690)
++++|||+||||||||||||||||+|+. .++|||||++++||..+....
T Consensus 149 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~------------------------- 203 (410)
T 1v8k_A 149 TIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPR------------------------- 203 (410)
T ss_dssp HHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHH-------------------------
T ss_pred HHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhc-------------------------
Confidence 9999999999999999999999999963 368999999999999886410
Q ss_pred HHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccc
Q psy2748 171 EQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNR 250 (690)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~ 250 (690)
..+..|.|++||+|||||.|||||.+. ..+
T Consensus 204 ----------------------------------------~~~~~~~V~vS~lEIYnE~i~DLL~~~----------~~l 233 (410)
T 1v8k_A 204 ----------------------------------------YRNLNLEVYVTFFEIYNGKVFDLLNKK----------AKL 233 (410)
T ss_dssp ----------------------------------------HHTTCCEEEEEEEEEETTEEEETTTTT----------EEE
T ss_pred ----------------------------------------ccCccEEEEEEEEEeeCCEEEECCCCC----------CCc
Confidence 123458999999999999999999753 246
Q ss_pred eEeecCCCCeEEeeeEEEEecCchhhhhh---------------------------------------------------
Q psy2748 251 LIREDGDKNMFVHGVNEIEVTTPDEAFQS--------------------------------------------------- 279 (690)
Q Consensus 251 ~ired~~~~~~V~gl~~v~V~s~eea~~~--------------------------------------------------- 279 (690)
.+++|+.++++|.|++++.|.+.+|++.+
T Consensus 234 ~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~skL~lVDLAGSER~ 313 (410)
T 1v8k_A 234 RVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERG 313 (410)
T ss_dssp EEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSSSEEEEEEEEECCCCCC-
T ss_pred eEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCCcceeEEEEEECCCcccc
Confidence 79999999999999999999999999887
Q ss_pred -------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhccccc-CCCCceeEEEEEeCCCCCCHHH
Q psy2748 280 -------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSY-FTGDGDVRMIVCVNPRVEDYDE 345 (690)
Q Consensus 280 -------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkds-LgGnskt~mIvcVsP~~~~~~E 345 (690)
+.+||+||++||+||.+|++++ .||||||||||+||||+ ||||++|+||+||||+..+++|
T Consensus 314 ~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~-----~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP~~~~~~E 388 (410)
T 1v8k_A 314 ADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-----AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEY 388 (410)
T ss_dssp -----------TTHHHHHHHHHHHHHHHHHHTC-----------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHH
T ss_pred ccccccccchhHHHHHHhHHHHHHHHHHHHHhcCC-----CCCCcccchhHHHHhhcccCCCceEEEEEEeCCccccHHH
Confidence 3479999999999999998754 79999999999999999 5999999999999999999999
Q ss_pred HhhHHHHHhhhhceeecc
Q psy2748 346 NLAVMKFAEMSQEVQISK 363 (690)
Q Consensus 346 Tl~TLrFA~rak~I~~~~ 363 (690)
||+||+||++|++|...|
T Consensus 389 TlsTLrfA~rak~i~~~~ 406 (410)
T 1v8k_A 389 TLNTLRYADRVKELSHHH 406 (410)
T ss_dssp HHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHhccCCCCC
Confidence 999999999999997644
No 24
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=1.6e-64 Score=544.22 Aligned_cols=266 Identities=29% Similarity=0.439 Sum_probs=213.5
Q ss_pred CCCEEEEEEecCCCCC-C--CCceEEEec------CcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhhH
Q psy2748 22 SDPLQVFCRIRPMDNS-Y--DESCISVVS------DTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAH 92 (690)
Q Consensus 22 ~~~V~V~~RvRP~~~~-e--~~~~i~v~~------~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~~ 92 (690)
+++|+|||||||+... + ..+++.+.. ..++.+..+.. ....+.|.||+||+++++|++||+.+ .
T Consensus 2 k~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~ 74 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQN------TAQVHEFKFDKIFDQQDTNVDVFKEV-G 74 (347)
T ss_dssp -CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGG------TTCEEEEEESEEECTTCCHHHHHHHH-H
T ss_pred CCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCC------CcCceEEeeCEEECCCCCHHHHHHHH-H
Confidence 6889999999999862 2 334554431 12455554322 23467899999999999999999996 5
Q ss_pred HHHHHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHHH
Q psy2748 93 PLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQ 172 (690)
Q Consensus 93 plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~~ 172 (690)
|+|+++++|||+||||||||||||||||+|. ++|||||++++||+.|....
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~--------------------------- 125 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLK--------------------------- 125 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHG---------------------------
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhh---------------------------
Confidence 8999999999999999999999999999995 57999999999999886521
Q ss_pred HHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccccccccceE
Q psy2748 173 AEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLI 252 (690)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~~~~~~~~i 252 (690)
+.+..|.|++||+|||||.|||||.+.............+.+
T Consensus 126 --------------------------------------~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i 167 (347)
T 1f9v_A 126 --------------------------------------TKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 167 (347)
T ss_dssp --------------------------------------GGTCEEEEEEEEEEEETTEEEETTC-------------CCCE
T ss_pred --------------------------------------hcCCceEEEEEEEEEECCeeeeccCCccccccccccCCceeE
Confidence 124469999999999999999999876431111111123456
Q ss_pred eec-CCCCeEEeeeEEEEecCchhhhhh----------------------------------------------------
Q psy2748 253 RED-GDKNMFVHGVNEIEVTTPDEAFQS---------------------------------------------------- 279 (690)
Q Consensus 253 red-~~~~~~V~gl~~v~V~s~eea~~~---------------------------------------------------- 279 (690)
+++ ..++++|.|++++.|.+.+|++.+
T Consensus 168 ~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAG 247 (347)
T 1f9v_A 168 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTLNLVDLAG 247 (347)
T ss_dssp EEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEEEEEEEEEECCC
T ss_pred EEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCCCceeeeEEEEEECCC
Confidence 665 567899999999999999999876
Q ss_pred ----------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCH
Q psy2748 280 ----------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDY 343 (690)
Q Consensus 280 ----------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~ 343 (690)
+.+||+||++|++||.+|++++ +...||||||||||+||||+||||++|+||+||+|+..++
T Consensus 248 SEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~--~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~ 325 (347)
T 1f9v_A 248 SERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD--STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHI 325 (347)
T ss_dssp CCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGH
T ss_pred CccccccccchhhhHHHHHHhHHHHHHHHHHHHHhccc--CCCCcCccccCHHHHHHHHHhCCCccEEEEEEeCCccccH
Confidence 5689999999999999998765 2347999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHhhhhceeecc
Q psy2748 344 DENLAVMKFAEMSQEVQISK 363 (690)
Q Consensus 344 ~ETl~TLrFA~rak~I~~~~ 363 (690)
+||++||+||+|+++|++.+
T Consensus 326 ~ETl~TLrfA~r~~~i~~~~ 345 (347)
T 1f9v_A 326 NETLNSLRFASKVNSTRLVS 345 (347)
T ss_dssp HHHHHHHHHHHHHCCTTTC-
T ss_pred HHHHHHHHHHHHHhhhccCC
Confidence 99999999999999998654
No 25
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=4.5e-64 Score=541.46 Aligned_cols=268 Identities=27% Similarity=0.457 Sum_probs=210.9
Q ss_pred CCCCCEEEEEEecCCCCCCCC--ceEEEe--c----CcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHhh
Q psy2748 20 GSSDPLQVFCRIRPMDNSYDE--SCISVV--S----DTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVA 91 (690)
Q Consensus 20 ~~~~~V~V~~RvRP~~~~e~~--~~i~v~--~----~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v~ 91 (690)
+.+|+|+|||||||+...|.. +++.+. + ..++.+..+.+ ....+.|.||+||+++++|++||+.+
T Consensus 2 ~lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~f~FD~Vf~~~~~Q~~vf~~v- 74 (349)
T 3t0q_A 2 ALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEG------RILSYNFQFDMIFEPSHTNKEIFEEI- 74 (349)
T ss_dssp ---CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--------CEEEEEEESEEECTTCCHHHHHHHH-
T ss_pred CCCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCC------cccceeeecCEEECCCccHHHHHHHH-
Confidence 468999999999999876533 233332 1 12455544333 23467899999999999999999986
Q ss_pred HHHHHHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhHHHHHHHH
Q psy2748 92 HPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQE 171 (690)
Q Consensus 92 ~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e~~~ll~~ 171 (690)
.|+|+++++|||+||||||||||||||||+|+ ++|||||++++||+.+....
T Consensus 75 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~-------------------------- 126 (349)
T 3t0q_A 75 RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLK-------------------------- 126 (349)
T ss_dssp HHHHHGGGTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHG--------------------------
T ss_pred HHHHHHHHCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhh--------------------------
Confidence 58999999999999999999999999999996 56999999999999887521
Q ss_pred HHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccc--ccccc
Q psy2748 172 QAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNAR--IQLNN 249 (690)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~--~~~~~ 249 (690)
+.+..|.|++||+|||||.|+|||.+........ .....
T Consensus 127 ---------------------------------------~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~ 167 (349)
T 3t0q_A 127 ---------------------------------------ERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQK 167 (349)
T ss_dssp ---------------------------------------GGTEEEEEEEEEEEEETTEEEETTC---------------C
T ss_pred ---------------------------------------hcCceeEEEEEEEEEEcchhhcccccccccccccccccccc
Confidence 1244799999999999999999998754211111 11233
Q ss_pred ceEeecC-CCCeEEeeeEEEEecCchhhhhh-------------------------------------------------
Q psy2748 250 RLIREDG-DKNMFVHGVNEIEVTTPDEAFQS------------------------------------------------- 279 (690)
Q Consensus 250 ~~ired~-~~~~~V~gl~~v~V~s~eea~~~------------------------------------------------- 279 (690)
+.++++. .++++|.|++++.|.+.+|++.+
T Consensus 168 ~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVD 247 (349)
T 3t0q_A 168 HDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGKLNLVD 247 (349)
T ss_dssp CCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTTCCEEEEEEEEEE
T ss_pred ceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCCCCeeEEEEEEEe
Confidence 4566654 56799999999999999999887
Q ss_pred -------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCC
Q psy2748 280 -------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340 (690)
Q Consensus 280 -------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~ 340 (690)
+.+||+||++||+||.+|++++. ...||||||||||+||||+||||++|+||+||+|+.
T Consensus 248 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~--~~~hiPyRdSkLT~lLqdsLgGnskt~mi~~vsP~~ 325 (349)
T 3t0q_A 248 LAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDA--GKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDP 325 (349)
T ss_dssp CCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTG--GGSCCCGGGSHHHHHHGGGSSTTCEEEEEEEECCCG
T ss_pred CCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccC--CCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCch
Confidence 56899999999999999988652 236999999999999999999999999999999999
Q ss_pred CCHHHHhhHHHHHhhhhceeecc
Q psy2748 341 EDYDENLAVMKFAEMSQEVQISK 363 (690)
Q Consensus 341 ~~~~ETl~TLrFA~rak~I~~~~ 363 (690)
.+++||++||+||+|+++|+..+
T Consensus 326 ~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 326 NHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp GGHHHHHHHHHHHHHHHC-----
T ss_pred hhHHHHHHHHHHHHHhhhcccCC
Confidence 99999999999999999998754
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-64 Score=552.77 Aligned_cols=277 Identities=29% Similarity=0.428 Sum_probs=221.4
Q ss_pred CcccCCCCCCCCCCEEEEEEecCCCCC-C--CCceEEEec--C----cEEEEcCCCCCCCCcCCCcceEEEecEEeCCCC
Q psy2748 11 RKVAFSQNNGSSDPLQVFCRIRPMDNS-Y--DESCISVVS--D----TTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDV 81 (690)
Q Consensus 11 ~~~~~~~~~~~~~~V~V~~RvRP~~~~-e--~~~~i~v~~--~----~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~a 81 (690)
||.+++..++.+|+|+|||||||+... + ..+++.+.. + .++.+..+.. ....+.|.||+||++++
T Consensus 47 rr~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~~~~~~F~FD~VF~~~~ 120 (403)
T 4etp_A 47 RRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQN------TAQVHEFKFDKIFDQQD 120 (403)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSS------SCEEEEEEESEEECTTC
T ss_pred HHHHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCC------CcCceEEEcCEEECCCC
Confidence 455677778889999999999998755 2 234444431 1 1334433222 23467899999999999
Q ss_pred ChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCccee
Q psy2748 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEV 161 (690)
Q Consensus 82 sQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i 161 (690)
+|++||+.++ |+|+++++|||+||||||||||||||||+|+ ++|||||++++||+.|....
T Consensus 121 ~Q~~Vf~~v~-~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~---------------- 181 (403)
T 4etp_A 121 TNVDVFKEVG-QLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLK---------------- 181 (403)
T ss_dssp CHHHHHHHHH-HHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHH-HHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhh----------------
Confidence 9999999865 8999999999999999999999999999995 56999999999999887521
Q ss_pred hhHHHHHHHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCC
Q psy2748 162 QSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGN 241 (690)
Q Consensus 162 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~ 241 (690)
..+..|.|++||+|||||.|||||.+.....
T Consensus 182 -------------------------------------------------~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 212 (403)
T 4etp_A 182 -------------------------------------------------TKGWDYKVNAEFIEIYNENIVDLLRSDNNNK 212 (403)
T ss_dssp -------------------------------------------------TTTEEEEEEEEEEEEETTEEEETTCC-----
T ss_pred -------------------------------------------------ccCceEEEEEEEEEEecceeeEccCCccccc
Confidence 1245799999999999999999998765221
Q ss_pred ccccccccceEeecC-CCCeEEeeeEEEEecCchhhhhh-----------------------------------------
Q psy2748 242 NARIQLNNRLIREDG-DKNMFVHGVNEIEVTTPDEAFQS----------------------------------------- 279 (690)
Q Consensus 242 ~~~~~~~~~~ired~-~~~~~V~gl~~v~V~s~eea~~~----------------------------------------- 279 (690)
........+.++++. .++++|.|++++.|.+.+|++.+
T Consensus 213 ~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 292 (403)
T 4etp_A 213 EDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHS 292 (403)
T ss_dssp ---CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTTCCEE
T ss_pred cccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCCCCee
Confidence 111112234456554 56799999999999999999876
Q ss_pred ---------------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEE
Q psy2748 280 ---------------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRM 332 (690)
Q Consensus 280 ---------------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~m 332 (690)
+.+||+||++||+||.+|++++ +...||||||||||+||||+||||++|+|
T Consensus 293 ~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~--~~~~hiPyRdSkLT~LLqdsLgGnskt~m 370 (403)
T 4etp_A 293 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPD--STKRHIPFRNSKLTYLLQYSLTGDSKTLM 370 (403)
T ss_dssp EEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSC--TTTSCCCGGGSHHHHHTGGGTSTTCEEEE
T ss_pred EEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCcCCcccchHHHHHHHhcCCCceEEE
Confidence 5789999999999999998764 33469999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHhhHHHHHhhhhceeecc
Q psy2748 333 IVCVNPRVEDYDENLAVMKFAEMSQEVQISK 363 (690)
Q Consensus 333 IvcVsP~~~~~~ETl~TLrFA~rak~I~~~~ 363 (690)
|+||||+..+|+||++||+||+|++.|+..+
T Consensus 371 i~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~ 401 (403)
T 4etp_A 371 FVNISPSSSHINETLNSLRFASKVNSTRLVS 401 (403)
T ss_dssp EEEECCSGGGHHHHHHHHHHHHHHCCC----
T ss_pred EEEeCCchhhHHHHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999998754
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=3.1e-62 Score=525.25 Aligned_cols=247 Identities=21% Similarity=0.414 Sum_probs=196.4
Q ss_pred CCCCCCCCEEEEEEecCCCCCCC---CceEEEec---CcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChHHHHHHh
Q psy2748 17 QNNGSSDPLQVFCRIRPMDNSYD---ESCISVVS---DTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEV 90 (690)
Q Consensus 17 ~~~~~~~~V~V~~RvRP~~~~e~---~~~i~v~~---~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~evF~~v 90 (690)
......++|+|+|||||+...+. .+++.+.+ +.++.+ ..+.|.||+||+++++|++||+.+
T Consensus 16 m~~~~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~-------------~~~~F~FD~Vf~~~~sQ~~Vy~~~ 82 (344)
T 3dc4_A 16 MEGAKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIV-------------DQNEFHFDHAFPATISQDEMYQAL 82 (344)
T ss_dssp ---CCCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEE-------------TTEEEECSEEECTTCCHHHHHHHH
T ss_pred CCCCCCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEe-------------cCcEEEcceEECCCCCHHHHHHhh
Confidence 34466889999999999875432 23333322 222222 246899999999999999999999
Q ss_pred hHHHHHHHhccCCeEEEEecccCCCCeeecCCCC------CCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehhH
Q psy2748 91 AHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTN------SDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQ 164 (690)
Q Consensus 91 ~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~------~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~e 164 (690)
+.|+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.|...+.
T Consensus 83 ~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~------------------ 144 (344)
T 3dc4_A 83 ILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQE------------------ 144 (344)
T ss_dssp THHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSS------------------
T ss_pred ccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhh------------------
Confidence 9999999999999999999999999999999875 4689999999999999876221
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCccc
Q psy2748 165 VDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNAR 244 (690)
Q Consensus 165 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~~ 244 (690)
+....|.|++||+|||||.|||||.+......
T Consensus 145 ----------------------------------------------~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~-- 176 (344)
T 3dc4_A 145 ----------------------------------------------NNKDAIQVYASFIEIYNEKPFDLLGSTPHMPM-- 176 (344)
T ss_dssp ----------------------------------------------SCSSCCEEEEEEEEEESSCEEETTSSCTTSBC--
T ss_pred ----------------------------------------------ccccceEEEEEEEEEeCCeeEEccCCCCCCcc--
Confidence 12235889999999999999999987542100
Q ss_pred cccccceEeecCCCCeEEeeeEEEEecCchhhhhh---------------------------------------------
Q psy2748 245 IQLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQS--------------------------------------------- 279 (690)
Q Consensus 245 ~~~~~~~ired~~~~~~V~gl~~v~V~s~eea~~~--------------------------------------------- 279 (690)
+ ...+.|++++.|.+.+|++.+
T Consensus 177 -------~------~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~skl~lVDLA 243 (344)
T 3dc4_A 177 -------V------AARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSRMNIVDLA 243 (344)
T ss_dssp -------C------SSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECSSCEEEEEEEECC
T ss_pred -------c------cccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEecCcEEEEEEEECC
Confidence 0 001125555555555555544
Q ss_pred -----------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCC
Q psy2748 280 -----------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVED 342 (690)
Q Consensus 280 -----------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~ 342 (690)
+.+||+||++|++||.+|++++ .||||||||||+||||+||||++|+||+||||+..+
T Consensus 244 GSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~-----~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~ 318 (344)
T 3dc4_A 244 GSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-----TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCD 318 (344)
T ss_dssp CCCCC-------------CCSCCHHHHHHHHHHHHHTTC-----SSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGG
T ss_pred CCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccC-----CcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhh
Confidence 7889999999999999998865 799999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHhhhhcee
Q psy2748 343 YDENLAVMKFAEMSQEVQ 360 (690)
Q Consensus 343 ~~ETl~TLrFA~rak~I~ 360 (690)
++|||+||+||+||++..
T Consensus 319 ~~ETlsTL~fA~ra~~~~ 336 (344)
T 3dc4_A 319 LSETLSTLRFGTSAKAAA 336 (344)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 999999999999999764
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.4e-58 Score=542.94 Aligned_cols=260 Identities=28% Similarity=0.466 Sum_probs=207.7
Q ss_pred CCCCCCEEEEEEec-----CCCCCCCCc--eEEEec--------CcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCCh
Q psy2748 19 NGSSDPLQVFCRIR-----PMDNSYDES--CISVVS--------DTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQ 83 (690)
Q Consensus 19 ~~~~~~V~V~~RvR-----P~~~~e~~~--~i~v~~--------~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ 83 (690)
....+.++|||||| |+..+++.+ .+.+.. ...|.+.++.. +....++|+||+||+++++|
T Consensus 370 ~~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~f~fd~vf~~~~~q 444 (715)
T 4h1g_A 370 AALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNIN-----NNFSNLRFLFDKIFEREQSN 444 (715)
T ss_dssp SSSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEET-----TEEEEEEEECSEEECSSCCH
T ss_pred HHHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCC-----CCCCCeEEEeceEeCCCCCH
Confidence 34568899999999 443322221 122211 22333333222 24567899999999999999
Q ss_pred HHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcccCCCCccccCCCCCcceehh
Q psy2748 84 KQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQS 163 (690)
Q Consensus 84 ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~~~~~~~~~~p~~~~~~~i~~ 163 (690)
++||+.+ .|+|+++++|||+||||||||||||||||+| .++|||||++++||+.|....
T Consensus 445 ~~v~~~~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g--~~~Giipr~~~~lf~~~~~~~------------------ 503 (715)
T 4h1g_A 445 DLVFEEL-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSH--PTNGMIPLSLKKIFNDIEELK------------------ 503 (715)
T ss_dssp HHHGGGT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHC--TTTSHHHHHHHHHHHHHHHHG------------------
T ss_pred HHHHHHH-HHHHHHHhCCceEEEEccCCCCCchhhccCC--CCCCcHHHHHHHHHHHHHHhh------------------
Confidence 9999986 5899999999999999999999999999999 468999999999999887521
Q ss_pred HHHHHHHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEEccceeecccCCCCCCcc
Q psy2748 164 QVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNA 243 (690)
Q Consensus 164 e~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIYNe~v~DLL~~~~~~~~~ 243 (690)
+.+..|.|++||+|||||.|||||.+....
T Consensus 504 -----------------------------------------------~~~~~~~v~~s~~Eiyne~i~DLl~~~~~~--- 533 (715)
T 4h1g_A 504 -----------------------------------------------EKGWSYTVRGKFIEIYNEAIVDLLNPKIDP--- 533 (715)
T ss_dssp -----------------------------------------------GGTEEEEEEEEEEEEETTEEEESSSCCCCT---
T ss_pred -----------------------------------------------cCCceEEEEEEEEEEECCEEEECCCCCCCC---
Confidence 234579999999999999999999875421
Q ss_pred ccccccceEe-ecCCCCeEEeeeEEEEecCchhhhhh-------------------------------------------
Q psy2748 244 RIQLNNRLIR-EDGDKNMFVHGVNEIEVTTPDEAFQS------------------------------------------- 279 (690)
Q Consensus 244 ~~~~~~~~ir-ed~~~~~~V~gl~~v~V~s~eea~~~------------------------------------------- 279 (690)
...+.++ ++..++++|.|++++.|.+.+|++.+
T Consensus 534 ---~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~~~~~~~ 610 (715)
T 4h1g_A 534 ---NTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSYG 610 (715)
T ss_dssp ---TCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETTTCCEEEE
T ss_pred ---CCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecCCCCEeEE
Confidence 1123344 45566799999999999999999877
Q ss_pred -------------------------ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEE
Q psy2748 280 -------------------------IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIV 334 (690)
Q Consensus 280 -------------------------a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIv 334 (690)
+.+||+||++|++||.+|+.++ ..|||||||||||||||+|||||+|+|||
T Consensus 611 ~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~----~~~vpyR~SkLT~lL~~slggn~~t~~i~ 686 (715)
T 4h1g_A 611 TLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKD----GSHVPYRNSKLTYLLKHSLGGNSKTLMFV 686 (715)
T ss_dssp EEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCS----CCCCCGGGCHHHHHTGGGTSTTCEEEEEE
T ss_pred EEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCcCCCccCHHHHHHHhhcCCCceEEEEE
Confidence 5679999999999999998743 37999999999999999999999999999
Q ss_pred EeCCCCCCHHHHhhHHHHHhhhhceee
Q psy2748 335 CVNPRVEDYDENLAVMKFAEMSQEVQI 361 (690)
Q Consensus 335 cVsP~~~~~~ETl~TLrFA~rak~I~~ 361 (690)
||||+..+|+|||+||+||+||++|++
T Consensus 687 ~isp~~~~~~et~~tL~fa~r~~~i~~ 713 (715)
T 4h1g_A 687 NISPLTKDLNETINSLRFATKVNNTRI 713 (715)
T ss_dssp EECCBGGGHHHHHHHHHHHHHHCC---
T ss_pred EECCChhhHHHHHHHHHHHHHhcccee
Confidence 999999999999999999999999974
No 29
>3vhx_B Kinesin-like protein KIF23; small GTPase, GTP binding, flemming BODY, cytokinesis, cell signaling protein complex; HET: GTP; 2.81A {Homo sapiens}
Probab=100.00 E-value=9.7e-54 Score=379.08 Aligned_cols=108 Identities=43% Similarity=0.655 Sum_probs=102.6
Q ss_pred CCCCCCCccccccCCCCCCCCCCccccccCCCCcCCCCCCcccccCCCCCceeeeccCCccccccccccceeeeeeccCC
Q psy2748 532 APAPPRSTRRRSRSAGPPTNPAGTWLHHTPGQVLLNTPHGTVFQPTGWKKRKSVTALTDVKDIVDPKLAKYSLMTQEPNT 611 (690)
Q Consensus 532 ~~~~~~~~~rrs~sa~~~~~~~~~w~~h~p~~~~~~~~~~tv~qp~~~~~~~~v~~~~~~k~~~~~k~~~y~l~~qe~~~ 611 (690)
++||+|||||||+||| +|||||+|.++ ||+||||||+ |+|+|+|++|++ |+| +||++|||||||+|+
T Consensus 10 ~~~p~~~~hRRS~Sag------~rWldH~P~~~---vp~gTvlQP~-~p~~~~v~~ps~-k~l--~K~~kY~LthQE~ds 76 (120)
T 3vhx_B 10 NAPPIRLRHRRSRSAG------DRWVDHKPASN---MQTETVMQPH-VPHAITVSVANE-KAL--AKCEKYMLTHQELAS 76 (120)
T ss_dssp CCCCSSCCSCCCCSSS------CCEEEECCTTC---CCCSCSEEEC-CTTEEEESSCCH-HHH--HHCSEEEEEEEEECT
T ss_pred CCCCcCcceecccCCC------CcceecCCCCC---CCCCcccccc-ccCceeeecCCh-hhh--hcccceEEEeeeecC
Confidence 7899999999999998 99999999999 9999999999 899999999999 999 999999999999999
Q ss_pred CCceeeEEEeeccCCCCeeecCCCCeeEEecccccccccCCCCCcc
Q psy2748 612 DGEMETHLFKVNYLDGDVLPTVGGGAQVVFNELETLRQTSPLSSPV 657 (690)
Q Consensus 612 ~ge~eTkl~K~~~~~gdv~~t~ggg~~v~f~d~e~Lkq~sp~~~~~ 657 (690)
|||||||||| ||||||||||+||||||||||||+||+++++
T Consensus 77 dGeieTkL~K-----GdV~~T~gGG~~V~FtDiE~Lkq~sP~~~rk 117 (120)
T 3vhx_B 77 DGEIETKLIK-----GDIYKTRGGGQSVQFTDIETLKQESPNGSRK 117 (120)
T ss_dssp TSCEEEEEEE-----EEEEECTTSCEEEEEEEEEEEEEECCC----
T ss_pred CCcEEEEEEE-----eeEEeecCCceEEEecchheeeccCCCcccc
Confidence 9999999999 9999999999999999999999999998543
No 30
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.94 E-value=3.3e-28 Score=215.41 Aligned_cols=86 Identities=23% Similarity=0.459 Sum_probs=81.0
Q ss_pred ccccccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHHHHhhHHHHHhhhhce
Q psy2748 280 IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEV 359 (690)
Q Consensus 280 a~~IN~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl~TLrFA~rak~I 359 (690)
|++||+||++||+||.+|++++ ..||||||||||+||+|+||||++|+||+||+|+..+++||++||+||++|+.|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~----~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i 76 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGT----KTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTI 76 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTC----CSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTC
T ss_pred CCcchHHHHHHHHHHHHHHhcC----CCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999853 379999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCcC
Q psy2748 360 QISKALPSRL 369 (690)
Q Consensus 360 ~~~~~v~~~~ 369 (690)
++.+.+|...
T Consensus 77 ~~~~~~n~~~ 86 (100)
T 2kin_B 77 KNTVSVNLEL 86 (100)
T ss_dssp EEEECCEEEC
T ss_pred cCcceeccCC
Confidence 9999988754
No 31
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.93 E-value=4.9e-26 Score=207.86 Aligned_cols=82 Identities=22% Similarity=0.453 Sum_probs=77.6
Q ss_pred ccccchHHHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHHHHhhHHHHHhhhhceeecc
Q psy2748 284 NNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQISK 363 (690)
Q Consensus 284 N~SL~aL~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl~TLrFA~rak~I~~~~ 363 (690)
|+||++||+||.+|++++ ..||||||||||+||+|+||||++|+||+||+|+..+++||++||+||++|+.|++.+
T Consensus 1 N~SL~~Lg~vi~aL~~~~----~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~ 76 (117)
T 3kin_B 1 NKSLSALGNVISALAEGT----KTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 76 (117)
T ss_dssp CCHHHHHHHHHHHHHHSC----CSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHHHHHhCC----CCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCc
Confidence 899999999999999853 3699999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcC
Q psy2748 364 ALPSRL 369 (690)
Q Consensus 364 ~v~~~~ 369 (690)
.+|...
T Consensus 77 ~~n~~~ 82 (117)
T 3kin_B 77 SVNLEL 82 (117)
T ss_dssp CCCBCC
T ss_pred eecCcC
Confidence 988754
No 32
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4e-25 Score=226.56 Aligned_cols=241 Identities=10% Similarity=0.130 Sum_probs=166.0
Q ss_pred CcccCCCCCCCCCCEEEEEEecCCCCCCCCceEEEecCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCCChH--HHHH
Q psy2748 11 RKVAFSQNNGSSDPLQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVGQK--QVYS 88 (690)
Q Consensus 11 ~~~~~~~~~~~~~~V~V~~RvRP~~~~e~~~~i~v~~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~asQ~--evF~ 88 (690)
||.+++..++.+|+|+|||||||..-+ ..|...-.+..|.+. . + .+.|.||+||++.++|+ +||+
T Consensus 12 RRkL~NsI~ELKGnIRVFcrvrp~~~p--~~~~v~y~~~~I~v~-~-~---------~k~f~FDRVf~p~s~Qe~~~vf~ 78 (298)
T 2o0a_A 12 SRRLENSIIEQKGTMRCYAYVMEQNLP--ENLLFDYENGVITQG-L-S---------EHVYKFNRVIPHLKVSEDKFFTQ 78 (298)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECGGGSC--TTEEEETTTTEEEET-T-T---------CCEEECSEEEETTTSCHHHHHHH
T ss_pred HHHHHhHHHHhhCceEEEEEeccccCC--ccceeecCccceeec-C-C---------CceEEeeeEECccccccHHHHHH
Confidence 445566677889999999999996411 456433333445542 1 2 26899999999999999 9999
Q ss_pred HhhHHHHHHHhc-cCCeEEEEecccCCCCeeecCCCCCCCChHHHHHHHHHHHhcc-cCCCCccccCCCCCcceehhHHH
Q psy2748 89 EVAHPLVANLIH-AKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIGR-YQPRKRTFRPDKLNGFEVQSQVD 166 (690)
Q Consensus 89 ~v~~plV~~~l~-G~N~~IfaYGqTGSGKTyTm~G~~~~~GIiPR~l~~LF~~i~~-~~~~~~~~~p~~~~~~~i~~e~~ 166 (690)
++ .++|+.+|+ |||+||||||||||||| ||++..+|..... +
T Consensus 79 E~-~~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~---------------------- 122 (298)
T 2o0a_A 79 EY-SVYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTIY---------------------- 122 (298)
T ss_dssp TT-HHHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHH----------------------
T ss_pred HH-HHHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhc----------------------
Confidence 96 889999999 99999999999999999 9999999986543 1
Q ss_pred HHHHHHHHhhcccccCCCCCCCccCCCCCCCccccccccccccccCCceEEEEEEEEEEE-ccceeecccCCCCCCcccc
Q psy2748 167 ILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIY-NNSVHDLLEDMPEGNNARI 245 (690)
Q Consensus 167 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sV~vSyiEIY-Ne~v~DLL~~~~~~~~~~~ 245 (690)
. ..|.+.++|+||| |+.++|||...+..
T Consensus 123 ---------------------------------------------~-~~Y~~tlq~veLy~Ne~~~DLL~~~~~~----- 151 (298)
T 2o0a_A 123 ---------------------------------------------Q-KQYVITLQFVFLSDDEFSQDMLLDYSHN----- 151 (298)
T ss_dssp ---------------------------------------------H-HHEEEEEEEEEEECC-CEEETTSCCC-------
T ss_pred ---------------------------------------------c-cceEEEEEEEEEecCCchHHhcCCCCCC-----
Confidence 0 3589999999999 99999999854432
Q ss_pred ccccceEeecCCCCeEEeeeEEEEecC-chhhhhhc-----cccc---cccchH--------------------------
Q psy2748 246 QLNNRLIREDGDKNMFVHGVNEIEVTT-PDEAFQSI-----GNIN---NSLMTL-------------------------- 290 (690)
Q Consensus 246 ~~~~~~ired~~~~~~V~gl~~v~V~s-~eea~~~a-----~~IN---~SL~aL-------------------------- 290 (690)
....|+.+..+..+|.|++.+.|.+ .+|+..+- -+.| ..++.|
T Consensus 152 --~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~~~~~~gi~i~k~~~~~~~~~~~~~~~~~~~d~yf~e~~ 229 (298)
T 2o0a_A 152 --DKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEHPNLPHSGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELN 229 (298)
T ss_dssp ------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC-------CEEEEEEEEEEESCC-------CCCEEEEEEEEC
T ss_pred --CcceEEecCCCCEEecccEEEEccccHHHHHHHhhcccccccCCCCceEEEEEEecCcccccccCCCCceEEEEEEeC
Confidence 1335777888999999999999999 88776542 1111 112222
Q ss_pred -HHHHHHHhhhcccCCCCCCCCCCchhhhcccccCCCCceeEEEEEeCCCCCCHHHHhhHHHHHhhhhceeecc
Q psy2748 291 -RTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQISK 363 (690)
Q Consensus 291 -~~cI~aL~~~q~~g~~~~VPYRdSKLT~LLkdsLgGnskt~mIvcVsP~~~~~~ETl~TLrFA~rak~I~~~~ 363 (690)
.+.|..|...-..+ -+-.|.++-+|+..|- ..|.+++++++-..... ..|..++..+.+.|.+
T Consensus 230 ~~~~~~~l~~~~~~~-----~~~~spi~~il~~ll~-~tks~~~~~l~~~~~~~----~lL~~s~~i~~~~~~~ 293 (298)
T 2o0a_A 230 NLKSIEQFDKSIFKK-----ESCETPIALVLKKLIS-DTKSFFLLNLNDSKNVN----KLLTISEEVQTQLCKR 293 (298)
T ss_dssp SHHHHHHHHHHHHTC------CCCSHHHHHHHHHHH-HSBCEEEEEECCGGGHH----HHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHhhcccc-----cccCCcHHHHHHHHHh-cCcceEEEEecCCCchh----HHHHHHHHhhcccCcc
Confidence 11233332211111 2556788888877664 36788888887643332 2677777777766533
No 33
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.43 E-value=0.023 Score=53.87 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=36.2
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
++||.....+..|+++++.+ ..+++++-......++-||++|+|||+.+.
T Consensus 7 ~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 7 ANLDTYHPKNVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp CCSSSCCCCSHHHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CccccccCCCHHHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 57887666566788888765 556666544444567889999999999873
No 34
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.90 E-value=0.07 Score=51.35 Aligned_cols=50 Identities=24% Similarity=0.205 Sum_probs=33.4
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccC-CeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAK-NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~-N~~IfaYGqTGSGKTyTm 120 (690)
.++|+.....+..+.++++.+ ..+++..-.+. +..|+-||++|+|||+.+
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFA-ERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHH-HHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHH-HHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 457877666555677777754 33444433322 267888999999999976
No 35
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.42 E-value=0.11 Score=54.40 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=32.1
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
++|+.+......+..++.. +...++.+-.+....|+-||++|+||||.+.
T Consensus 121 ~tfd~f~~~~~~~~~~~~~-~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSA-ILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHH-HHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred CCHhhCcCCChHHHHHHHH-HHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 5676655444355566663 3445554433334567889999999999874
No 36
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.09 E-value=0.43 Score=49.21 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=31.8
Q ss_pred ecEEeCCCCChHHHHHHhhHHHHHHHhccCC----eEEEEecccCCCCeeec
Q psy2748 73 FKKIFNVDVGQKQVYSEVAHPLVANLIHAKN----GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 73 Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N----~~IfaYGqTGSGKTyTm 120 (690)
|+.+|+..---..+.+.++..++.+++...+ ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4445544444456777777777777664222 35677999999999855
No 37
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.37 E-value=0.61 Score=43.04 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=21.4
Q ss_pred HHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 93 PLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 93 plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+++.+..+....++-||++|+|||+.+
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 3444455566677899999999999877
No 38
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=80.70 E-value=0.57 Score=46.99 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=21.7
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.|+|+.+.|.+..-..+.+.+ ..+.. .+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~~-----~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQV-----SHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHHHH-----HHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHHHH-----HHHhC-CCCCEEEECCCCCcHHHHH
Confidence 378888876544333333322 22332 3456778999999999765
No 39
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=80.58 E-value=0.68 Score=42.77 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=21.3
Q ss_pred HHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 93 PLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 93 plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+++.+..+....++-||++|+|||+.+
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 3444455566777899999999999866
No 40
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=80.14 E-value=0.55 Score=49.48 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=24.2
Q ss_pred HHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 87 YSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 87 F~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
|+.+...|-..+-.|...+|+-||++|+|||.++
T Consensus 29 ~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 29 FTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3344333334444678889999999999999876
No 41
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=76.95 E-value=0.59 Score=46.83 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=31.8
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHH-HHHhc----cCCeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLV-ANLIH----AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV-~~~l~----G~N~~IfaYGqTGSGKTyTm 120 (690)
.+.|+.+.|.+...+.+.+.+. .+- ...+. .....|+-||++|+|||+.+
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 4688999988877666665432 211 01111 22334789999999999866
No 42
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=74.29 E-value=0.72 Score=46.54 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=31.5
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHH-----HHhccCCeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVA-----NLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~-----~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+.|+.+.|.+..-+.+.+.+..++.. .+--.....|+-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 467888887665555555555433221 110123445888999999999865
No 43
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=73.44 E-value=0.86 Score=46.95 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=32.0
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHH-HHhc----cCCeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVA-NLIH----AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~-~~l~----G~N~~IfaYGqTGSGKTyTm 120 (690)
.++|+.|.|.+..-+.+.+.+..|+.. +.+. .....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 357788877665555566655544321 1111 23456888999999999765
No 44
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=73.10 E-value=0.85 Score=47.29 Aligned_cols=43 Identities=21% Similarity=0.397 Sum_probs=27.9
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.|+|+.++|. +.+... +...++.+..+-|+-||.+|+|||+..
T Consensus 20 ~~~f~~i~G~----~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 20 VFPFSAIVGQ----EDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCGGGSCSC----HHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCchhccCh----HHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 4788888764 333332 223344444455889999999999865
No 45
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=73.02 E-value=1.5 Score=41.66 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=17.7
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..+++|.| ++..++||||||.+.
T Consensus 34 i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 34 IPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHccCCC--EEEECCCCCchHHHH
Confidence 444567776 567889999999654
No 46
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=72.74 E-value=1.4 Score=42.65 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=19.0
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..++.|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGTF 68 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 3445677877 678899999999773
No 47
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=71.65 E-value=1.5 Score=41.57 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=17.9
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..+++|.| ++..++||||||.+.
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHHH
Confidence 344667876 566789999999864
No 48
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=71.57 E-value=0.57 Score=46.64 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=28.0
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHH-HHHhccC----CeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLV-ANLIHAK----NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV-~~~l~G~----N~~IfaYGqTGSGKTyTm 120 (690)
.++|+.|.+.+....++-+ +...+- ..++++. ...++-||++|+|||+.+
T Consensus 12 ~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 4688888876543333322 221110 1122222 122889999999999876
No 49
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=71.10 E-value=1.7 Score=47.51 Aligned_cols=28 Identities=39% Similarity=0.593 Sum_probs=22.7
Q ss_pred HHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 93 PLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 93 plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.++.+++....+.+.-.|+||||||.||
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 3555566666788999999999999988
No 50
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=70.92 E-value=1.9 Score=45.08 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=30.7
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCe--EEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNG--LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~--~IfaYGqTGSGKTyTm 120 (690)
.+.|+.+.+ |+.+...+ ..+++.+..|... .++-||++|+|||+..
T Consensus 40 ~~~~~~ivG----~~~~~~~l-~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVG----QLAARRAA-GVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEES----CHHHHHHH-HHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccC----hHHHHHHH-HHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 355777765 44554443 3355555566653 7889999999999766
No 51
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=70.40 E-value=0.79 Score=46.47 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=27.6
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHH-HHHhccC----CeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLV-ANLIHAK----NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV-~~~l~G~----N~~IfaYGqTGSGKTyTm 120 (690)
.++|+.|.+.+....++-+-+ ..+- ..++++. ...|+-||++|+|||+.+
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~-~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHH-HHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHH-HHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 467888776654333332222 1110 1122222 112889999999999876
No 52
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=70.11 E-value=1.9 Score=40.66 Aligned_cols=21 Identities=38% Similarity=0.374 Sum_probs=16.4
Q ss_pred ccCCeEEEEecccCCCCeeec
Q psy2748 100 HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+....++-||++|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445999999999999875
No 53
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=69.99 E-value=1.3 Score=45.76 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=28.7
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.|+||..... ..+...+.. +..+++.-- +....++-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~g-~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIVG-EGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCCC-TTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCCC-CcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 4788876532 234444444 233333211 123468889999999998773
No 54
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=69.13 E-value=2.4 Score=42.60 Aligned_cols=21 Identities=29% Similarity=0.126 Sum_probs=17.7
Q ss_pred ccCCeEEEEecccCCCCeeec
Q psy2748 100 HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyTm 120 (690)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 556678999999999999865
No 55
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=69.07 E-value=1.8 Score=46.11 Aligned_cols=27 Identities=37% Similarity=0.585 Sum_probs=22.3
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+.+++.-..+.+.-.|+||||||.+|
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 455666667779999999999999988
No 56
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=68.47 E-value=1.9 Score=42.30 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=19.0
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..++.|.+ ++..++||||||.+.
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3455677877 678899999999763
No 57
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=67.91 E-value=1.3 Score=43.63 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=19.0
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..++.|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3445677877 567999999999763
No 58
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=67.17 E-value=0.84 Score=47.67 Aligned_cols=45 Identities=27% Similarity=0.325 Sum_probs=28.3
Q ss_pred EEeCCCCChHHHHHHhhHHHHHHHh-ccCCeEEEEecccCCCCeeec
Q psy2748 75 KIFNVDVGQKQVYSEVAHPLVANLI-HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 75 ~VF~~~asQ~evF~~v~~plV~~~l-~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+++.-..+++.++.+.. .+..++ .+....++-||++|+|||+.+
T Consensus 16 ~~p~~~~gr~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAE-VLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCSCCTTCHHHHHHHHH-TTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred cCCCCCCCHHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 333444556666666533 233333 345567899999999999876
No 59
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=66.27 E-value=2.7 Score=40.41 Aligned_cols=44 Identities=14% Similarity=0.273 Sum_probs=26.4
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHHHHhc-cCCeEEEEecccCCCCeeec
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIH-AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~~~l~-G~N~~IfaYGqTGSGKTyTm 120 (690)
++|+.+++. ..++.++..+ ..++. +....|+-||++|+|||+.+
T Consensus 25 ~~~~~~~~~-~~~~~~~~~l-----~~~~~~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGAL-----KSAASGDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSTTTSCC---CCHHHHHHH-----HHHHHTCSCSEEEEECSTTSSHHHHH
T ss_pred CChhhccCC-CCCHHHHHHH-----HHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 456655542 2334454433 23333 35667889999999999876
No 60
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=66.17 E-value=1.1 Score=47.57 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=29.4
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHH----hccCCeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANL----IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~----l~G~N~~IfaYGqTGSGKTyTm 120 (690)
...|+.+.|.+..-+.+.+.+..|+...- +.+....|+-||++|+|||+.+
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 35677776654333334444333322111 2234567889999999999765
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=65.89 E-value=3.5 Score=43.06 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=26.9
Q ss_pred CCChHHHHHHhhHHHHHHHhccCC-e--EEEEecccCCCCeeec
Q psy2748 80 DVGQKQVYSEVAHPLVANLIHAKN-G--LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 80 ~asQ~evF~~v~~plV~~~l~G~N-~--~IfaYGqTGSGKTyTm 120 (690)
-..+++..+.+.. .+..++.|.. . .++-||++|+|||+++
T Consensus 19 l~gr~~~~~~l~~-~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 19 LPHREQQLQQLDI-LLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp CTTCHHHHHHHHH-HHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred CCChHHHHHHHHH-HHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 3455666666533 4555555543 4 6889999999999876
No 62
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=65.77 E-value=1.2 Score=45.25 Aligned_cols=51 Identities=27% Similarity=0.369 Sum_probs=31.0
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHH-HHhcc---CCeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVA-NLIHA---KNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~-~~l~G---~N~~IfaYGqTGSGKTyTm 120 (690)
...|+.+.|.+..-+.+.+.+..|+.. .++.| ....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 357788877654444444444444321 11122 3457889999999999865
No 63
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=65.69 E-value=2.4 Score=41.38 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=18.5
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..+++|.+ ++..++||||||.+.
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 3445677877 456789999999864
No 64
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=65.23 E-value=1.9 Score=39.73 Aligned_cols=17 Identities=24% Similarity=0.604 Sum_probs=14.5
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
..++-||++|+|||+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp SEEEEESSSTTTTCHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45677999999999987
No 65
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=64.76 E-value=1.3 Score=42.08 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=16.8
Q ss_pred HHhccCCeEEEEecccCCCCeeec
Q psy2748 97 NLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 97 ~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.++.|.+ ++..++||||||.+.
T Consensus 44 ~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 44 PALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHhcCCC--EEEEcCCCCCHHHHH
Confidence 3456766 556899999999876
No 66
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=64.65 E-value=2.5 Score=40.72 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=18.3
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..+++|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 3445667877 566779999999765
No 67
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=63.77 E-value=2.1 Score=43.00 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=18.7
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
++..++.|.| ++..++||||||.+.
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHHH
Confidence 3445567877 677899999999764
No 68
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=63.08 E-value=2.7 Score=41.56 Aligned_cols=24 Identities=25% Similarity=0.577 Sum_probs=17.5
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..++.|.| ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 344567877 456689999999764
No 69
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=62.64 E-value=2.9 Score=40.52 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=18.3
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..+++|.|. +..++||||||.+.
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 4456678775 67789999999874
No 70
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=62.17 E-value=2.4 Score=46.25 Aligned_cols=48 Identities=23% Similarity=0.394 Sum_probs=27.2
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.|+||..... .++...+..+ ..+++. .|....+|-||++|+|||+.+.
T Consensus 101 ~~tfd~fv~g-~~n~~a~~~~-~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 101 DYTFENFVVG-PGNSFAYHAA-LEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TCSGGGCCCC-TTTHHHHHHH-HHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCChhhcCCC-CchHHHHHHH-HHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 4788775422 2333333322 223322 1213468899999999999873
No 71
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=62.07 E-value=1.6 Score=45.58 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=30.7
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHH-HHhccC---CeEEEEecccCCCCeeec
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVA-NLIHAK---NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~-~~l~G~---N~~IfaYGqTGSGKTyTm 120 (690)
.+|+.|.|.+..-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 36777777655444555555444431 233332 245788999999999765
No 72
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=61.98 E-value=3.1 Score=43.77 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=19.8
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..++.|.+ ++..++||||||.+.
T Consensus 70 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 70 AILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HhHHHhCCCC--EEEECCCCCcccHHH
Confidence 4566778888 677999999999764
No 73
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=61.36 E-value=1.5 Score=44.64 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=28.3
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHH-HHhccCC----eEEEEecccCCCCeeec
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVA-NLIHAKN----GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~-~~l~G~N----~~IfaYGqTGSGKTyTm 120 (690)
.+|+.|-|.+.-.+++.+.+..|+-. .++++.+ .-++-||+.|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 56777776665555666666555532 2333332 12889999999999765
No 74
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=60.96 E-value=3.1 Score=41.36 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=18.0
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..++.|.+ ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 3445667877 456679999999764
No 75
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=60.93 E-value=4.1 Score=44.51 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=30.9
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhccCC--eEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKN--GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N--~~IfaYGqTGSGKTyTm 120 (690)
.|.|+.+.| |+++.+.+ ..+++.+..|.. ..++-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 456677664 55666654 345666666653 35677999999999765
No 76
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=60.90 E-value=3.1 Score=40.91 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=17.4
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..++.|.|. +..++||||||.+.
T Consensus 60 i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCcCHHHHHH
Confidence 3445678774 45679999999874
No 77
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=60.45 E-value=2.9 Score=42.43 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.2
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
...|+-||++|+|||+..
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 446899999999999865
No 78
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=60.30 E-value=3.3 Score=40.73 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=18.1
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
++..+..|. .++..|+||||||..+
T Consensus 69 ~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 69 ILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 445555665 4678899999999755
No 79
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=60.12 E-value=3 Score=42.33 Aligned_cols=20 Identities=55% Similarity=0.773 Sum_probs=17.2
Q ss_pred cCCeEEEEecccCCCCeeec
Q psy2748 101 AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 101 G~N~~IfaYGqTGSGKTyTm 120 (690)
.....+.-.|+||||||.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 45668889999999999988
No 80
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=60.10 E-value=3.4 Score=40.24 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=17.7
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..++.|.| ++..++||||||.+.
T Consensus 55 i~~~~~~~~--~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 55 IPLGRCGLD--LIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 344677877 456789999999764
No 81
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=58.96 E-value=4 Score=42.65 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=26.9
Q ss_pred CCChHHHHHHhhHHHHHHHhccC-CeEEEEecccCCCCeeec
Q psy2748 80 DVGQKQVYSEVAHPLVANLIHAK-NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 80 ~asQ~evF~~v~~plV~~~l~G~-N~~IfaYGqTGSGKTyTm 120 (690)
-..+++..+.+.. .+..++.|. ...|+-||++|+|||+.+
T Consensus 22 l~gr~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 22 IPFREDILRDAAI-AIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CTTCHHHHHHHHH-HHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred CCChHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3455666666543 445554443 458999999999999865
No 82
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=58.91 E-value=5.6 Score=39.11 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=15.3
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
...|+-||++|+|||+..
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456889999999999866
No 83
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=58.90 E-value=3.4 Score=42.55 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=19.8
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..++.|...-++.+++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 345567774445788999999999763
No 84
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=58.54 E-value=4.9 Score=36.28 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=14.9
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
+.-|+-||.+|+|||+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp SSCEEEEEETTCCHHHHHG
T ss_pred CCcEEEECCCCccHHHHHH
Confidence 3446779999999998763
No 85
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=57.28 E-value=2.7 Score=40.58 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=17.5
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..+++|.|+ +..++||||||.+.
T Consensus 35 i~~~~~~~~~--lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 35 IPGALRGESM--VGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHTCCE--EEECCSSHHHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 3445678774 56789999999764
No 86
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.66 E-value=3.7 Score=44.91 Aligned_cols=73 Identities=23% Similarity=0.357 Sum_probs=46.1
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHH-HHhc--cC--CeEEEEecccCCCCeeecC--------------CC---CCCCC
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVA-NLIH--AK--NGLLLTYGVTGSGKTYTMN--------------GT---NSDGG 128 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~-~~l~--G~--N~~IfaYGqTGSGKTyTm~--------------G~---~~~~G 128 (690)
-+|+.|-|-+.--+++.+.+..|+.. .++. |. ---|+-||+.|+|||+..- |+ ....|
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~G 248 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLG 248 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccc
Confidence 57888888776666677777666653 2333 32 2348899999999996542 11 12346
Q ss_pred hHHHHHHHHHHHhcc
Q psy2748 129 IMMRCIDVLFNSIGR 143 (690)
Q Consensus 129 IiPR~l~~LF~~i~~ 143 (690)
--.+.+..+|.....
T Consensus 249 e~e~~ir~lF~~A~~ 263 (428)
T 4b4t_K 249 EGPRMVRDVFRLARE 263 (428)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 666777777765543
No 87
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.25 E-value=3.1 Score=45.62 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=35.4
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHH-HHhc--cC--CeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVA-NLIH--AK--NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~-~~l~--G~--N~~IfaYGqTGSGKTyTm 120 (690)
.-+|+.|-|-+.--+++.+.+..|+.. +++. |. -..|+-||+.|+|||+..
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 347888888877667777777777752 2332 32 235777999999998654
No 88
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=56.00 E-value=34 Score=35.74 Aligned_cols=81 Identities=11% Similarity=0.046 Sum_probs=53.8
Q ss_pred CCCCCCCCEEEEEEecCCCCCCCCceEEEe-cCcEEEEcCCCCCCCCcCCCcceEEEecEEeCCCC--ChHHHHHHhhHH
Q psy2748 17 QNNGSSDPLQVFCRIRPMDNSYDESCISVV-SDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDV--GQKQVYSEVAHP 93 (690)
Q Consensus 17 ~~~~~~~~V~V~~RvRP~~~~e~~~~i~v~-~~~tv~l~~p~~~~~r~~~~~~~~f~Fd~VF~~~a--sQ~evF~~v~~p 93 (690)
.-.+.+|.|++|+=+-.-.-++ .| .+. .+.+|. +- .....|.|++|+..+. .+.-+|++. +.
T Consensus 53 SIdElKG~IRcFAYi~~~~~p~--~~-~idY~~~~It--~~---------~~~~~y~FnRiIp~~~~~e~~~l~qE~-q~ 117 (333)
T 4etp_B 53 SIIEQKGTMRVYAYVMEQNLPE--NL-LFDYENGVIT--QG---------LSEHVYKFNRVIPHLKVSEDCFFTQEY-SV 117 (333)
T ss_dssp HHHHHHTCCEEEEEECCSSCCS--SC-EEETTTTEEE--C-----------CCCEEECSEEEETTTCCHHHHHHHTT-HH
T ss_pred hHHHhcCcEEEEEEECcccCCc--cE-EEecccceEe--ec---------CCcceEEEeeeechhhcchHHHHHHHH-HH
Confidence 3345689999999987732221 22 332 233553 11 1245799999997765 444555554 88
Q ss_pred HHHHHh-ccCCeEEEEeccc
Q psy2748 94 LVANLI-HAKNGLLLTYGVT 112 (690)
Q Consensus 94 lV~~~l-~G~N~~IfaYGqT 112 (690)
.++-+| .+.|+.||+-|..
T Consensus 118 y~DmcL~~~~NfslIsis~~ 137 (333)
T 4etp_B 118 YHDMALNQKKNFNLISLSTT 137 (333)
T ss_dssp HHHHHHHTTCCEEEEEEESS
T ss_pred HHHHHHccCCCeeEEEecCC
Confidence 999999 8999999999865
No 89
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=55.68 E-value=5.3 Score=37.82 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=14.7
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
..++-||+.|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47889999999999865
No 90
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=55.16 E-value=3.6 Score=40.70 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=20.5
Q ss_pred HHHHHhccC--CeEEEEecccCCCCeeecC
Q psy2748 94 LVANLIHAK--NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 94 lV~~~l~G~--N~~IfaYGqTGSGKTyTm~ 121 (690)
.+..++.|. ..+|+-||+.|+|||+...
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 345566663 3468999999999998763
No 91
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=54.86 E-value=4.4 Score=42.75 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=18.9
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..++.|.| ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 3455677887 567789999999764
No 92
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=53.93 E-value=3.7 Score=41.47 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=16.0
Q ss_pred HHhccCCeEEEEecccCCCCeeec
Q psy2748 97 NLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 97 ~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.++.|.+++| .++||||||.+.
T Consensus 124 ~~l~~~~~ll--~~~tGsGKT~~~ 145 (282)
T 1rif_A 124 EGLVNRRRIL--NLPTSAGRSLIQ 145 (282)
T ss_dssp HHHHHSEEEE--CCCTTSCHHHHH
T ss_pred HHHhcCCeEE--EcCCCCCcHHHH
Confidence 3455555544 999999999876
No 93
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=53.87 E-value=6 Score=40.76 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=27.3
Q ss_pred EecEEeCCCCChHHHHHHhhHHHHHHHh--ccCCeEEEEecccCCCCeeec
Q psy2748 72 VFKKIFNVDVGQKQVYSEVAHPLVANLI--HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 72 ~Fd~VF~~~asQ~evF~~v~~plV~~~l--~G~N~~IfaYGqTGSGKTyTm 120 (690)
+|+.+. .|+.+...+. .++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~ii----G~~~~~~~l~-~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYI----GQESIKKNLN-VFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCC----SCHHHHHHHH-HHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhC----ChHHHHHHHH-HHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 455554 4556655543 3444433 234457899999999999755
No 94
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=53.80 E-value=5.7 Score=44.61 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=18.2
Q ss_pred HHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
++.+..|.+.+|++ ++||||||.++.
T Consensus 191 ~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 191 VQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 34444576655555 899999999874
No 95
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=53.47 E-value=2.1 Score=44.35 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=29.3
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHHH-HhccC---CeEEEEecccCCCCeeec
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVAN-LIHAK---NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~~-~l~G~---N~~IfaYGqTGSGKTyTm 120 (690)
.+|+.|.|.+.--+.+.+.+..|+... ++.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 467777765544444444444443211 12221 245888999999999865
No 96
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=53.41 E-value=56 Score=37.11 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=12.5
Q ss_pred ccCCeEEEEecccCCCCeeec
Q psy2748 100 HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+....|...|.+|+|||+.|
T Consensus 35 ~~~~~~VaivG~pnvGKStLi 55 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLM 55 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHH
Confidence 444455666677777776543
No 97
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=53.29 E-value=6.7 Score=38.76 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=27.3
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHHHHhc---------cCCeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVANLIH---------AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~~~l~---------G~N~~IfaYGqTGSGKTyTm 120 (690)
.+.|+.+.|.+..-+.+.+ ++..+.. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAE-----LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHH-----HHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHH-----HHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 3577777765543333332 3332211 12345889999999999866
No 98
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=53.17 E-value=4.8 Score=42.22 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=18.0
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..++.|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 445567877 567889999999754
No 99
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=53.17 E-value=2.2 Score=45.44 Aligned_cols=51 Identities=27% Similarity=0.370 Sum_probs=28.2
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHH-HHhc---cCCeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVA-NLIH---AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~-~~l~---G~N~~IfaYGqTGSGKTyTm 120 (690)
.+.|+.+.|.+.--+.+.+.+..++.. .++. .....|+-||++|+|||+..
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 456777776443333333333333221 0111 22357889999999999765
No 100
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.08 E-value=5.6 Score=41.31 Aligned_cols=42 Identities=31% Similarity=0.437 Sum_probs=25.8
Q ss_pred EecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 72 VFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 72 ~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.|+.+++ |.++.+.+ -..+-.|.-.-++-||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~~L----~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVITTV----RKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHHHH----HHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHHHH----HHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 4555664 55554433 233334543337779999999999873
No 101
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=53.06 E-value=5 Score=42.07 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=20.0
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..++.|.+.-++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 345566775556788899999999764
No 102
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=52.76 E-value=5.2 Score=36.19 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=15.7
Q ss_pred cCCeEEEEecccCCCCeeec
Q psy2748 101 AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 101 G~N~~IfaYGqTGSGKTyTm 120 (690)
..+.-|+-||.+|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 34556888999999998754
No 103
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=52.67 E-value=4.9 Score=41.69 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=19.2
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..++.|...-++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 344556774455678899999999764
No 104
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=52.66 E-value=6.1 Score=42.95 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=20.6
Q ss_pred HHHHHhccCCeEEEEecccCCCCeee
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyT 119 (690)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 34556777667789999999999976
No 105
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=52.65 E-value=5.1 Score=40.62 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=17.4
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..+++|.+ ++..++||||||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 344567776 556789999999764
No 106
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=52.58 E-value=4.7 Score=44.22 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=27.0
Q ss_pred CCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 80 DVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 80 ~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
-..|+++.... ..|...+-.|.-..++-||++|+|||+..
T Consensus 28 ivGq~~~~~~~-~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 28 YIGQQHLLAAG-KPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CCSCHHHHSTT-SHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred hCCcHHHHhch-HHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 34567766431 33444445566668899999999999765
No 107
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=52.49 E-value=4.7 Score=39.88 Aligned_cols=22 Identities=32% Similarity=0.161 Sum_probs=16.5
Q ss_pred HHhccCCeEEEEecccCCCCeeec
Q psy2748 97 NLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 97 ~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.++.+.+ ++.+|+||+|||+..
T Consensus 104 ~~~~~~~--~ll~~~tG~GKT~~a 125 (237)
T 2fz4_A 104 RWLVDKR--GCIVLPTGSGKTHVA 125 (237)
T ss_dssp HHTTTSE--EEEEESSSTTHHHHH
T ss_pred HHHhCCC--EEEEeCCCCCHHHHH
Confidence 4556655 566789999999875
No 108
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=52.46 E-value=11 Score=38.49 Aligned_cols=32 Identities=31% Similarity=0.311 Sum_probs=22.6
Q ss_pred HhhHHHHHHHhccC-----CeEEEEecccCCCCeeec
Q psy2748 89 EVAHPLVANLIHAK-----NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 89 ~v~~plV~~~l~G~-----N~~IfaYGqTGSGKTyTm 120 (690)
.+...++..++.|+ -.+|+..|+.|||||+..
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 34455666666553 357889999999998754
No 109
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=52.03 E-value=6.8 Score=40.08 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=22.6
Q ss_pred HHHHHHHhccC---CeEEEEecccCCCCeeec
Q psy2748 92 HPLVANLIHAK---NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 92 ~plV~~~l~G~---N~~IfaYGqTGSGKTyTm 120 (690)
...+.++++|. -.+|+-||+.|+|||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 33467788887 347999999999998754
No 110
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=51.80 E-value=7.3 Score=39.66 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=25.5
Q ss_pred EecEEeCCCCChHHHHHHhhHHHHHHHhc--cCCeEEEEecccCCCCeeec
Q psy2748 72 VFKKIFNVDVGQKQVYSEVAHPLVANLIH--AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 72 ~Fd~VF~~~asQ~evF~~v~~plV~~~l~--G~N~~IfaYGqTGSGKTyTm 120 (690)
+|+.+.+ +..+...+ ..++..+.. +....|+-||++|+|||+..
T Consensus 10 ~~~~~ig----~~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIG----QERLKQKL-RVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCS----CHHHHHHH-HHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhC----HHHHHHHH-HHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 4555554 44444443 223333322 34456788999999999765
No 111
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=51.75 E-value=5.6 Score=40.27 Aligned_cols=38 Identities=32% Similarity=0.350 Sum_probs=24.0
Q ss_pred ChHHHHHHhhHHHHHHHhccC------CeEEEEecccCCCCeeec
Q psy2748 82 GQKQVYSEVAHPLVANLIHAK------NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 82 sQ~evF~~v~~plV~~~l~G~------N~~IfaYGqTGSGKTyTm 120 (690)
.|..+.+.+..-+ .....|. ...++-||++|+|||++.
T Consensus 21 G~~~~~~~l~~~i-~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADAI-RRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHHH-HHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHHH-HHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 5666666654332 3332221 357899999999999765
No 112
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=51.42 E-value=2.5 Score=43.92 Aligned_cols=20 Identities=40% Similarity=0.707 Sum_probs=16.4
Q ss_pred cCCeEEEEecccCCCCeeec
Q psy2748 101 AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 101 G~N~~IfaYGqTGSGKTyTm 120 (690)
+....++-||+.|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34568899999999999766
No 113
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=51.01 E-value=7.1 Score=40.65 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=24.9
Q ss_pred EecEEeCCCCChHHHHHHhhHHHHHH-HhccC-CeEEEEecccCCCCeeec
Q psy2748 72 VFKKIFNVDVGQKQVYSEVAHPLVAN-LIHAK-NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 72 ~Fd~VF~~~asQ~evF~~v~~plV~~-~l~G~-N~~IfaYGqTGSGKTyTm 120 (690)
.|+.+++ |..+.+.+.. .|+. ...|. -..++-||++|+|||+.+
T Consensus 23 ~l~~~~g----~~~~~~~l~~-~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 23 SLDEFIG----QENVKKKLSL-ALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SGGGCCS----CHHHHHHHHH-HHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred cHHHccC----cHHHHHHHHH-HHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 4566664 4555555432 2222 11221 134667999999999876
No 114
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=50.88 E-value=3.9 Score=43.66 Aligned_cols=27 Identities=52% Similarity=0.695 Sum_probs=20.6
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
++.++.--....+.-.|+||||||.+|
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 344444445678889999999999988
No 115
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=50.64 E-value=7 Score=39.59 Aligned_cols=36 Identities=28% Similarity=0.330 Sum_probs=23.2
Q ss_pred CChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 81 VGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 81 asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
..|+++.+.+. ..+-.|....++-||+.|+|||++.
T Consensus 28 ~g~~~~~~~l~----~~l~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 28 VGQEHIVKRLK----HYVKTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CSCHHHHHHHH----HHHHHTCCCEEEEESCTTSSHHHHH
T ss_pred hCCHHHHHHHH----HHHHcCCCCeEEEECcCCCCHHHHH
Confidence 34566655442 2233455445888999999999866
No 116
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=49.97 E-value=6.6 Score=39.52 Aligned_cols=18 Identities=39% Similarity=0.403 Sum_probs=15.0
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
...|+-||++|+|||+..
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456788999999999866
No 117
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=49.63 E-value=6.7 Score=43.82 Aligned_cols=19 Identities=42% Similarity=0.515 Sum_probs=15.9
Q ss_pred ccCCeEEEEecccCCCCeeec
Q psy2748 100 HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyTm 120 (690)
.|.+ +.-.|+||||||.||
T Consensus 259 ~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 5665 677899999999987
No 118
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=49.46 E-value=3.4 Score=43.66 Aligned_cols=50 Identities=20% Similarity=0.414 Sum_probs=29.7
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHH-HHhccC---CeEEEEecccCCCCeeec
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVA-NLIHAK---NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~-~~l~G~---N~~IfaYGqTGSGKTyTm 120 (690)
.+|+.|.|.+.--+.+.+.+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 57788777655444555554444321 122221 234777999999999765
No 119
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=49.27 E-value=4.8 Score=44.68 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=15.5
Q ss_pred CCeEEEEecccCCCCeeec
Q psy2748 102 KNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 102 ~N~~IfaYGqTGSGKTyTm 120 (690)
....|+-||++|+|||+..
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3456888999999999865
No 120
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.61 E-value=4.3 Score=41.80 Aligned_cols=41 Identities=29% Similarity=0.341 Sum_probs=25.1
Q ss_pred EecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 72 VFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 72 ~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.|+.+.+.+. +. ..+...+..|.-..++-||+.|+|||+++
T Consensus 35 ~~~~i~g~~~----~~----~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 35 NLDEVTAQDH----AV----TVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp STTTCCSCCT----TH----HHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred CHHHhhCCHH----HH----HHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 4666665443 22 22333344553334888999999999876
No 121
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=48.44 E-value=6.5 Score=41.38 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=18.0
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..++.|.|. +..++||||||.+.
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 3445678774 56889999999765
No 122
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.85 E-value=4.7 Score=44.24 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=34.3
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHH-HHhc--cC--CeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVA-NLIH--AK--NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~-~~l~--G~--N~~IfaYGqTGSGKTyTm 120 (690)
..+|+.|-|-+.--+++-+.+..|+.. .++. |. -.-|+-||+.|+|||+..
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 346788887776666677777666652 2333 22 245778999999998754
No 123
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=46.43 E-value=3.5 Score=45.04 Aligned_cols=51 Identities=18% Similarity=0.341 Sum_probs=27.9
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHH-HHhcc---CCeEEEEecccCCCCeeec
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVA-NLIHA---KNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~-~~l~G---~N~~IfaYGqTGSGKTyTm 120 (690)
...|+.|.|.+.--+.+.+.+..|+-. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 356777766443333333333333221 12222 2346778999999999765
No 124
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=46.27 E-value=7 Score=41.11 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=19.6
Q ss_pred HHHhcc---CCeEEEE--ecccCCCCeeec
Q psy2748 96 ANLIHA---KNGLLLT--YGVTGSGKTYTM 120 (690)
Q Consensus 96 ~~~l~G---~N~~Ifa--YGqTGSGKTyTm 120 (690)
..++.| ....++- ||..|+|||..+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555556 5567888 999999999866
No 125
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=45.82 E-value=4.4 Score=41.75 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=22.0
Q ss_pred CChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 81 VGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 81 asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
..|+++...+. ..+..|. -|+-||++|+|||+.+
T Consensus 30 ~g~~~~~~~l~----~~l~~~~--~vll~G~pGtGKT~la 63 (331)
T 2r44_A 30 VGQKYMINRLL----IGICTGG--HILLEGVPGLAKTLSV 63 (331)
T ss_dssp CSCHHHHHHHH----HHHHHTC--CEEEESCCCHHHHHHH
T ss_pred eCcHHHHHHHH----HHHHcCC--eEEEECCCCCcHHHHH
Confidence 34555554443 3334443 5677999999999876
No 126
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=45.46 E-value=7.5 Score=41.22 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=18.1
Q ss_pred HHHHHhccCCeEEEEecccCCCCeee
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyT 119 (690)
.+..+++|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3445567876 56889999999983
No 127
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=44.99 E-value=7.7 Score=42.86 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=19.1
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..++.|.+.-++..++||||||.+.
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHHH
Confidence 34566774455678899999999873
No 128
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=44.72 E-value=10 Score=38.81 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.3
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
...++-||++|+|||+++
T Consensus 48 ~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CSEEEECSSTTSSHHHHH
T ss_pred CeEEEeeCcCCCCHHHHH
Confidence 356888999999999876
No 129
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=44.38 E-value=9.1 Score=38.04 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=20.6
Q ss_pred HHhhHHHHHHHhccC-----CeEEEEecccCCCCeee
Q psy2748 88 SEVAHPLVANLIHAK-----NGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 88 ~~v~~plV~~~l~G~-----N~~IfaYGqTGSGKTyT 119 (690)
+.+...++..++.|+ ...|+..|+.|||||..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHH
Confidence 333334444555443 35689999999999864
No 130
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=44.10 E-value=7.9 Score=40.21 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=18.4
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..++.|.+ ++..++||||||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3455677877 556789999999764
No 131
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=44.01 E-value=9.6 Score=42.26 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=19.9
Q ss_pred HHHHHhccCCeEEEEecccCCCCeee
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyT 119 (690)
.+..++.|.+.-++..++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 44556666566788999999999986
No 132
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=43.39 E-value=8.4 Score=37.25 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=22.3
Q ss_pred HHHHHHHhcc---CCeEEEEecccCCCCeeec
Q psy2748 92 HPLVANLIHA---KNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 92 ~plV~~~l~G---~N~~IfaYGqTGSGKTyTm 120 (690)
-+-++.++.| ...++.-+|.+|||||..+
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 3567778854 2567888999999999876
No 133
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=42.71 E-value=10 Score=43.59 Aligned_cols=40 Identities=30% Similarity=0.302 Sum_probs=29.1
Q ss_pred eCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 77 FNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 77 F~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
|.|.-.|..-+.. +++.+-.|... ....|.|||||||||.
T Consensus 7 ~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 7 PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMA 46 (664)
T ss_dssp CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHH
Confidence 3788889887765 45555566533 3457999999999995
No 134
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=42.65 E-value=6.6 Score=39.59 Aligned_cols=21 Identities=38% Similarity=0.374 Sum_probs=16.3
Q ss_pred ccCCeEEEEecccCCCCeeec
Q psy2748 100 HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyTm 120 (690)
.|....++-||+.|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 354334888999999999865
No 135
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=42.27 E-value=5.8 Score=41.22 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=18.5
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455667877 456789999999764
No 136
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=41.91 E-value=11 Score=41.02 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=25.7
Q ss_pred CCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 80 DVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 80 ~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..|++.+..+.. . +....+.++..|..|||||+++
T Consensus 27 n~~Q~~av~~~~~----~-i~~~~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVMK----A-IKEKKHHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHHH----H-HHSSSCEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHHH----H-HhcCCCEEEEEeCCCCCHHHHH
Confidence 4578888776643 2 2223458899999999999876
No 137
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=41.00 E-value=10 Score=41.51 Aligned_cols=25 Identities=44% Similarity=0.563 Sum_probs=18.4
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3445567877 456789999999764
No 138
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.15 E-value=7.5 Score=42.16 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=35.4
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHH-HHhc--cC--CeEEEEecccCCCCeeec
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVA-NLIH--AK--NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~-~~l~--G~--N~~IfaYGqTGSGKTyTm 120 (690)
-+|+.|-|-+.--+++-+.+..|+.. +++. |. -.-|+-||+.|+|||...
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 57788888777677777777777752 2333 32 245789999999998654
No 139
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.07 E-value=6.3 Score=43.53 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=33.6
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHH-HHhc--c--CCeEEEEecccCCCCeeec
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVA-NLIH--A--KNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~-~~l~--G--~N~~IfaYGqTGSGKTyTm 120 (690)
-+|+.|-|-+.--+++.+.+..|+.. .++. | .---|+-||+.|+|||+..
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 57788877766566666666666652 2333 3 2345889999999998643
No 140
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=40.02 E-value=14 Score=38.08 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=23.6
Q ss_pred CCChHHHHHHhhHHHHHHHhccC-CeEEEEecccCCCCeeec
Q psy2748 80 DVGQKQVYSEVAHPLVANLIHAK-NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 80 ~asQ~evF~~v~~plV~~~l~G~-N~~IfaYGqTGSGKTyTm 120 (690)
-..|+++.+.+.. .+-.|. ...++-||+.|+|||+++
T Consensus 18 ~vg~~~~~~~L~~----~l~~~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 18 VVGQEHVLTALAN----GLSLGRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SCSCHHHHHHHHH----HHHHTCCCSEEEEESCTTSSHHHHH
T ss_pred ccCcHHHHHHHHH----HHHhCCCCeEEEEECCCCCCHHHHH
Confidence 3456666654432 222343 346789999999999865
No 141
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=39.56 E-value=12 Score=36.54 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=18.1
Q ss_pred HHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 93 PLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 93 plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+++++-.|.- +.-.|++|||||..|
T Consensus 14 ~~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHHhccCCCE--EEEECCCCCCHHHHH
Confidence 34555555554 445899999999876
No 142
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=39.48 E-value=14 Score=35.28 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=19.2
Q ss_pred HHHHHHHh--ccCCeEEEEecccCCCCeeec
Q psy2748 92 HPLVANLI--HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 92 ~plV~~~l--~G~N~~IfaYGqTGSGKTyTm 120 (690)
..|++.+. ....-.|.-.|++|||||..+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 33444443 234456777899999999865
No 143
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=39.25 E-value=13 Score=40.07 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=18.3
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..++.|.+ ++..++||||||...
T Consensus 87 i~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 87 IPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEECCCCCCchHHH
Confidence 444677877 577889999999765
No 144
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=39.25 E-value=1.8e+02 Score=25.73 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2748 440 SKLSQKFQSKMQAQAETYESKLRH 463 (690)
Q Consensus 440 ~~le~~~~~kl~~~~ek~e~kl~~ 463 (690)
..|+..++.++++.+.|+..+|++
T Consensus 60 lqLkse~e~E~ae~k~KYD~~lqe 83 (115)
T 3vem_A 60 SILKAELERKMAEVQAEFRRKFHE 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433333
No 145
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=39.19 E-value=15 Score=41.66 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=18.8
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+|..++.|.+ ++..++||||||.+.
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHHH
Confidence 3445577888 567889999999753
No 146
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=38.85 E-value=11 Score=40.92 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=17.6
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..++.|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 444567877 456789999999763
No 147
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=38.82 E-value=11 Score=38.52 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=17.1
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..++.|.. -++..++||||||.+.
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 344456632 3567899999999774
No 148
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=38.76 E-value=16 Score=34.80 Aligned_cols=29 Identities=28% Similarity=0.234 Sum_probs=19.7
Q ss_pred HHHHHHHhc---cCCeEEEEecccCCCCeeec
Q psy2748 92 HPLVANLIH---AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 92 ~plV~~~l~---G~N~~IfaYGqTGSGKTyTm 120 (690)
..+++.++. .....|.-.|.+|||||..+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 334444443 33457888999999999765
No 149
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=38.59 E-value=9.8 Score=36.23 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=20.0
Q ss_pred HHHHHHhc-cC--CeEEEEecccCCCCeeec
Q psy2748 93 PLVANLIH-AK--NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 93 plV~~~l~-G~--N~~IfaYGqTGSGKTyTm 120 (690)
+.++.++. |. ...+.-+|.+|||||..+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 44566665 33 346677999999999876
No 150
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=38.29 E-value=16 Score=39.98 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=25.9
Q ss_pred EecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 72 VFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 72 ~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.||.|.| +++.... +++.+..+....++-||++|+|||+...
T Consensus 178 ~ld~iiG----r~~~i~~----l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 178 SLDPVIG----RSKEIQR----VIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CSCCCCC----CHHHHHH----HHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccC----cHHHHHH----HHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 3555554 4444433 3443444555567789999999998763
No 151
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=38.05 E-value=11 Score=40.80 Aligned_cols=23 Identities=30% Similarity=0.154 Sum_probs=16.7
Q ss_pred HHHhccCCeEEEEecccCCCCeeec
Q psy2748 96 ANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 96 ~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+.++.|.+ ++..++||||||.+.
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHH
Confidence 34555654 566789999999874
No 152
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=38.04 E-value=11 Score=37.89 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=21.7
Q ss_pred ChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 82 sQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.|+++.+.+ ...+-.|.-..++-||+.|+|||+..
T Consensus 25 g~~~~~~~l----~~~l~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 25 GNKETIDRL----QQIAKDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCTHHHHHH----HHHHHSCCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHHHHH----HHHHHcCCCCeEEEECcCCCCHHHHH
Confidence 445554443 22233444333888999999999876
No 153
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=37.87 E-value=12 Score=35.58 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=21.9
Q ss_pred HHHHHHhc-cC--CeEEEEecccCCCCeeec
Q psy2748 93 PLVANLIH-AK--NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 93 plV~~~l~-G~--N~~IfaYGqTGSGKTyTm 120 (690)
+-++.++. |. ...+.-+|.+|||||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 55777776 44 457899999999999765
No 154
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=37.60 E-value=11 Score=42.91 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=18.8
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+|+.++.|.| ++..++||||||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 3445567877 567899999999865
No 155
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=37.37 E-value=11 Score=42.73 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=16.4
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
+..++..|.+|||||+|+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 4678899999999999984
No 156
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=36.77 E-value=14 Score=38.77 Aligned_cols=18 Identities=44% Similarity=0.558 Sum_probs=15.1
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
...|+-||++|+|||+..
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456889999999999865
No 157
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=36.19 E-value=15 Score=41.09 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=19.3
Q ss_pred HHHHHhccCCeEEEEecccCCCCeee
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyT 119 (690)
+|..++.|.+.-++..++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 44555655555678899999999986
No 158
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=36.11 E-value=8.9 Score=35.68 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=15.0
Q ss_pred eEEEEecccCCCCeeecC
Q psy2748 104 GLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~ 121 (690)
.++.-.|++|||||..+-
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 467789999999998874
No 159
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=34.83 E-value=8.6 Score=40.83 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.2
Q ss_pred CCeEEEEecccCCCCeeec
Q psy2748 102 KNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 102 ~N~~IfaYGqTGSGKTyTm 120 (690)
.|.-++..|.||||||++|
T Consensus 34 ~~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred ccCceEEEcCCCCCHHHHH
Confidence 3445677899999999887
No 160
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=34.75 E-value=16 Score=37.42 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=16.0
Q ss_pred cCCeEEEEecccCCCCeeec
Q psy2748 101 AKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 101 G~N~~IfaYGqTGSGKTyTm 120 (690)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 44667888999999998754
No 161
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=34.50 E-value=15 Score=34.94 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=21.0
Q ss_pred HHHHHHhc-cC--CeEEEEecccCCCCeeec
Q psy2748 93 PLVANLIH-AK--NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 93 plV~~~l~-G~--N~~IfaYGqTGSGKTyTm 120 (690)
+-++.++. |. ...+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 45677774 33 457888999999999776
No 162
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=34.40 E-value=11 Score=33.89 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=12.9
Q ss_pred EEEEecccCCCCeee
Q psy2748 105 LLLTYGVTGSGKTYT 119 (690)
Q Consensus 105 ~IfaYGqTGSGKTyT 119 (690)
.|+-.|..|||||+.
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999873
No 163
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=34.35 E-value=1.1e+02 Score=25.81 Aligned_cols=54 Identities=13% Similarity=0.317 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcc
Q psy2748 425 RMMKERQEEKTKATKSKLSQKFQSKMQAQAETYE---SKLRHNEKKVIRKVKNLIDSQ 479 (690)
Q Consensus 425 ~~L~~el~e~e~~~k~~le~~~~~kl~~~~ek~e---~kl~~~eek~L~qlk~il~~~ 479 (690)
+.|+....+-....-+.+-+++...+.+-++..+ .+..++++| |..+++.+..+
T Consensus 15 R~LRA~arel~le~Lee~leKl~~VveERree~~~~~~~~~er~~K-l~~~~e~l~~~ 71 (86)
T 3nr7_A 15 RTLRAQARESTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRK-LQQYREMLIAD 71 (86)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc
Confidence 4444444444444445555556655655555555 344456666 66666666553
No 164
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.05 E-value=12 Score=41.09 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=29.2
Q ss_pred EecEEeCCCCChHHHHHHhhHHHHH-HHhc--cC--CeEEEEecccCCCCeeec
Q psy2748 72 VFKKIFNVDVGQKQVYSEVAHPLVA-NLIH--AK--NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 72 ~Fd~VF~~~asQ~evF~~v~~plV~-~~l~--G~--N~~IfaYGqTGSGKTyTm 120 (690)
+|+.|-|-+.--+++.+.+..|+.. +++. |. -.-|+-||+.|+|||...
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHH
Confidence 5555555544445555555555531 2222 32 346889999999998643
No 165
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=33.65 E-value=11 Score=44.77 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=20.2
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeecCC
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm~G 122 (690)
+++-+..+....++-||++|+|||+.+.+
T Consensus 182 l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 182 VIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp HHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred HHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 44444455544567799999999987743
No 166
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=33.15 E-value=11 Score=38.92 Aligned_cols=15 Identities=47% Similarity=0.773 Sum_probs=13.6
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
++-||+.|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999876
No 167
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=33.04 E-value=12 Score=36.00 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=14.5
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
...|.-.|++|||||.++
T Consensus 8 g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECcCCCCHHHHH
Confidence 346777899999999865
No 168
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=32.88 E-value=20 Score=37.36 Aligned_cols=18 Identities=44% Similarity=0.545 Sum_probs=14.5
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 345777999999999865
No 169
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=32.61 E-value=12 Score=40.81 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=18.9
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..++.|.+ .++..|+||||||...
T Consensus 12 i~~~l~~~~-~~lv~a~TGsGKT~~~ 36 (451)
T 2jlq_A 12 DEDIFRKKR-LTIMDLHPGAGKTKRI 36 (451)
T ss_dssp CGGGGSTTC-EEEECCCTTSSCCTTH
T ss_pred HHHHHhcCC-eEEEECCCCCCHhhHH
Confidence 445677766 4568899999999863
No 170
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=32.57 E-value=18 Score=41.08 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=17.6
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..++.|.| ++..++||||||...
T Consensus 22 i~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 22 ALPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Confidence 344567877 457789999999853
No 171
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=32.23 E-value=18 Score=38.28 Aligned_cols=20 Identities=40% Similarity=0.476 Sum_probs=14.7
Q ss_pred hccCCeEEEEecccCCCCeeec
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm 120 (690)
-.|.+ +.-.|+||||||.++
T Consensus 173 ~~G~~--i~ivG~sGsGKSTll 192 (361)
T 2gza_A 173 QLERV--IVVAGETGSGKTTLM 192 (361)
T ss_dssp HTTCC--EEEEESSSSCHHHHH
T ss_pred hcCCE--EEEECCCCCCHHHHH
Confidence 35654 444599999999877
No 172
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=31.98 E-value=30 Score=35.65 Aligned_cols=17 Identities=35% Similarity=0.753 Sum_probs=15.0
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
..+.-.|++|||||.++
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 46778999999999988
No 173
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=31.85 E-value=19 Score=40.03 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=16.4
Q ss_pred HHhccCCeEEEEecccCCCCeeec
Q psy2748 97 NLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 97 ~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.+..|. -|+-||++|+|||+..
T Consensus 37 al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 37 AALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHhcCC--eeEeecCchHHHHHHH
Confidence 344454 5677999999999875
No 174
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=31.77 E-value=8.6 Score=42.57 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=14.0
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.|+-||++|+|||+.+
T Consensus 51 gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLA 66 (476)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4889999999999865
No 175
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=31.69 E-value=16 Score=41.54 Aligned_cols=19 Identities=42% Similarity=0.480 Sum_probs=15.7
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
+..++..|+.|||||+|+.
T Consensus 195 ~~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp CSEEEEECCTTSCHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3466789999999999974
No 176
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=31.54 E-value=15 Score=35.42 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=19.2
Q ss_pred HHHHhcc-C--CeEEEEecccCCCCeeec
Q psy2748 95 VANLIHA-K--NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G-~--N~~IfaYGqTGSGKTyTm 120 (690)
++.++.| . ..++.-+|.+|||||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4666544 2 457788999999999874
No 177
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=31.47 E-value=25 Score=36.71 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=15.5
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
...+.-.|++|||||.|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457788999999999887
No 178
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=31.44 E-value=9.6 Score=41.00 Aligned_cols=19 Identities=37% Similarity=0.580 Sum_probs=16.3
Q ss_pred CCeEEEEecccCCCCeeec
Q psy2748 102 KNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 102 ~N~~IfaYGqTGSGKTyTm 120 (690)
.+.-++..|.||||||.++
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 3567889999999999987
No 179
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=30.70 E-value=19 Score=39.87 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.9
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
..++-||++|+|||++.
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57888999999999876
No 180
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=30.42 E-value=16 Score=38.37 Aligned_cols=23 Identities=35% Similarity=0.232 Sum_probs=16.6
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..++.| + ++..++||+|||.++
T Consensus 18 i~~~~~~-~--~ll~~~tG~GKT~~~ 40 (494)
T 1wp9_A 18 YAKCKET-N--CLIVLPTGLGKTLIA 40 (494)
T ss_dssp HHHGGGS-C--EEEECCTTSCHHHHH
T ss_pred HHHHhhC-C--EEEEcCCCCCHHHHH
Confidence 4455667 3 445789999999876
No 181
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=30.28 E-value=13 Score=35.02 Aligned_cols=16 Identities=31% Similarity=0.519 Sum_probs=13.1
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.|.-.|++|||||..+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4566799999999766
No 182
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=29.96 E-value=11 Score=42.05 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=17.8
Q ss_pred HHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+|..++.|.+++ ..++||||||.+.
T Consensus 33 ~i~~il~g~d~l--v~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRDCL--VVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCCEE--EECSCHHHHHHHH
T ss_pred HHHHHHcCCCEE--EECCCCcHHHHHH
Confidence 344556788754 4679999999754
No 183
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=29.90 E-value=29 Score=40.95 Aligned_cols=17 Identities=47% Similarity=0.565 Sum_probs=15.1
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
+.|+-||++|+|||+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68899999999998765
No 184
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=29.81 E-value=14 Score=33.62 Aligned_cols=16 Identities=44% Similarity=0.661 Sum_probs=13.5
Q ss_pred eEEEEecccCCCCeee
Q psy2748 104 GLLLTYGVTGSGKTYT 119 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyT 119 (690)
..|+-.|..|||||+.
T Consensus 3 ~~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEecCCCCCHHHH
Confidence 3688999999999873
No 185
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=29.76 E-value=18 Score=41.18 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=18.0
Q ss_pred HHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
|..++.. +...+-.|+.|||||+|+.
T Consensus 198 V~~al~~-~~~~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 198 VLFALSQ-KELAIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHC-SSEEEEECCTTSCHHHHHH
T ss_pred HHHHhcC-CCceEEECCCCCCHHHHHH
Confidence 4444432 3355788999999999973
No 186
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=29.44 E-value=13 Score=34.70 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=13.3
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.+.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999998765
No 187
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=29.44 E-value=28 Score=40.44 Aligned_cols=38 Identities=32% Similarity=0.367 Sum_probs=23.7
Q ss_pred ChHHHHHHhhHHHHHHHhccCC------eEEEEecccCCCCeeec
Q psy2748 82 GQKQVYSEVAHPLVANLIHAKN------GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 82 sQ~evF~~v~~plV~~~l~G~N------~~IfaYGqTGSGKTyTm 120 (690)
.|.+....+... +.....|.. +.++-||++|+|||+..
T Consensus 495 Gq~~a~~~l~~~-i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 495 GQDEAVVAVAKA-VRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp SCHHHHHHHHHH-HHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred ChHHHHHHHHHH-HHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 455555555433 333333433 36889999999999865
No 188
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=29.44 E-value=10 Score=37.60 Aligned_cols=21 Identities=19% Similarity=0.048 Sum_probs=17.1
Q ss_pred CCeEEEEecccCCCCeeecCC
Q psy2748 102 KNGLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 102 ~N~~IfaYGqTGSGKTyTm~G 122 (690)
.-..++-||..|||||..+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHH
Confidence 346888899999999987754
No 189
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=29.25 E-value=28 Score=40.39 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.0
Q ss_pred hccCCeEEEEecccCCCCeeec
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm 120 (690)
-++.|-||+.-|.+|||||.+.
T Consensus 90 ~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 90 QSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HHCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCCcEEEecCCCCCCchhhH
Confidence 4699999999999999999875
No 190
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=29.23 E-value=24 Score=40.54 Aligned_cols=46 Identities=22% Similarity=0.383 Sum_probs=34.1
Q ss_pred EEecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 71 f~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
|....=|.|...|..-+..+ ++.+-.|... ....|.|||||||+|-
T Consensus 5 ~~~~~~~~p~~~Q~~~i~~l----~~~~~~~~~~-~~l~g~~gs~k~~~~a 50 (661)
T 2d7d_A 5 FELVSKYQPQGDQPKAIEKL----VKGIQEGKKH-QTLLGATGTGKTFTVS 50 (661)
T ss_dssp CCCCCSCCCCTTHHHHHHHH----HHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred ceeecCCCCCCCCHHHHHHH----HHHHhcCCCc-EEEECcCCcHHHHHHH
Confidence 66666688999998887764 5555566532 3456999999999995
No 191
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.04 E-value=1.7e+02 Score=23.83 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q psy2748 455 ETYESKLRHNEKKVIRKVKNLIDS 478 (690)
Q Consensus 455 ek~e~kl~~~eek~L~qlk~il~~ 478 (690)
+.++.+|.++|+. |+.|+.-|+.
T Consensus 43 ~eLEk~L~ekd~e-I~~LqseLDK 65 (72)
T 3nmd_A 43 DELELELDQKDEL-IQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3455777788888 8888888876
No 192
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=28.52 E-value=24 Score=40.91 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=26.3
Q ss_pred EecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeecC
Q psy2748 72 VFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 72 ~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm~ 121 (690)
.||.|.| +++.... +++.+.......++-||.+|+|||+.+.
T Consensus 184 ~~d~~iG----r~~~i~~----l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 184 GIDPLIG----REKELER----AIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp CSCCCCS----CHHHHHH----HHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred CCCCccC----CHHHHHH----HHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 4555554 4444333 4444444455567789999999998774
No 193
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=28.28 E-value=21 Score=42.06 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=48.9
Q ss_pred eEEEecEEeCCCCChHHHHHHhhHHHHHH-Hhc----cCCeEEEEecccCCCCeeecC------CC-----------CCC
Q psy2748 69 VQYVFKKIFNVDVGQKQVYSEVAHPLVAN-LIH----AKNGLLLTYGVTGSGKTYTMN------GT-----------NSD 126 (690)
Q Consensus 69 ~~f~Fd~VF~~~asQ~evF~~v~~plV~~-~l~----G~N~~IfaYGqTGSGKTyTm~------G~-----------~~~ 126 (690)
..+.|+.|.|.+..-+.+.+.+..|+... ++. .....|+-||++|+|||+.+- |. ...
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 35788999888877777777776555422 222 123457889999999997652 11 123
Q ss_pred CChHHHHHHHHHHHhcc
Q psy2748 127 GGIMMRCIDVLFNSIGR 143 (690)
Q Consensus 127 ~GIiPR~l~~LF~~i~~ 143 (690)
.|-....+..+|+....
T Consensus 279 ~g~~~~~l~~vf~~a~~ 295 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEK 295 (806)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 46667777888877654
No 194
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=28.27 E-value=29 Score=35.46 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=21.9
Q ss_pred HHHHHhhHHHHHHHh--ccCCeEEEEecccCCCCeeec
Q psy2748 85 QVYSEVAHPLVANLI--HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 85 evF~~v~~plV~~~l--~G~N~~IfaYGqTGSGKTyTm 120 (690)
++++.++..+..... .+....|.-.|.+|||||..+
T Consensus 11 ~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 11 YTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHH
Confidence 355555443433211 244556778899999999765
No 195
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=28.19 E-value=16 Score=33.78 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=12.8
Q ss_pred EEEEecccCCCCeee
Q psy2748 105 LLLTYGVTGSGKTYT 119 (690)
Q Consensus 105 ~IfaYGqTGSGKTyT 119 (690)
.|+-.|.+|||||..
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999863
No 196
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=28.12 E-value=13 Score=34.82 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=12.8
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.+.-.|++|||||.++
T Consensus 3 ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 3 PIVISGPSGTGKSTLL 18 (186)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456899999999876
No 197
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=28.10 E-value=16 Score=41.22 Aligned_cols=21 Identities=38% Similarity=0.401 Sum_probs=17.7
Q ss_pred cCCeEEEEecccCCCCeeecC
Q psy2748 101 AKNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 101 G~N~~IfaYGqTGSGKTyTm~ 121 (690)
-.++.++..|..|||||+|+.
T Consensus 20 ~~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 20 APRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CCSSCEEEEECTTSCHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHH
Confidence 346778899999999999984
No 198
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=28.08 E-value=15 Score=37.93 Aligned_cols=17 Identities=47% Similarity=0.726 Sum_probs=14.4
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
..|.-.|++|||||.++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46667799999999988
No 199
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=28.02 E-value=16 Score=33.43 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=14.3
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
.+|+-.|..|||||...
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999998754
No 200
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=27.94 E-value=18 Score=39.41 Aligned_cols=34 Identities=15% Similarity=0.047 Sum_probs=22.2
Q ss_pred eCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 77 FNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 77 F~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
|.+..-|.+.+.. ++.|.+ ++..|+||||||.+.
T Consensus 112 ~~l~~~Q~~ai~~--------~~~~~~--~ll~~~tGsGKT~~~ 145 (510)
T 2oca_A 112 IEPHWYQKDAVFE--------GLVNRR--RILNLPTSAGRSLIQ 145 (510)
T ss_dssp ECCCHHHHHHHHH--------HHHHSE--EEEECCSTTTHHHHH
T ss_pred CCCCHHHHHHHHH--------HHhcCC--cEEEeCCCCCHHHHH
Confidence 3445556555444 445555 456799999999886
No 201
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=27.71 E-value=31 Score=40.50 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=20.0
Q ss_pred hccCCeEEEEecccCCCCeeec
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm 120 (690)
-++.|-||+.-|.+|||||.+.
T Consensus 168 ~~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 168 DDRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HHCCCEEEEEECSTTSSHHHHH
T ss_pred hhcCCcEEEEecCCCCcchHHH
Confidence 3689999999999999999875
No 202
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=27.56 E-value=34 Score=39.60 Aligned_cols=17 Identities=47% Similarity=0.550 Sum_probs=15.0
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
+.++-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57899999999999876
No 203
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=27.54 E-value=14 Score=36.94 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=16.3
Q ss_pred eEEEEecccCCCCeeecCC
Q psy2748 104 GLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~G 122 (690)
..||..|..|+||||+|..
T Consensus 7 l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4589999999999999853
No 204
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=27.30 E-value=33 Score=39.76 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=25.4
Q ss_pred EecEEeCCCCChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 72 VFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 72 ~Fd~VF~~~asQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
.||.|.| +++.... +++.+..+....++-||++|+|||...
T Consensus 178 ~ld~iiG----~~~~i~~----l~~~l~~~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 178 SLDPVIG----RSKEIQR----VIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp CSCCCCC----CHHHHHH----HHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred CCCCccC----chHHHHH----HHHHHhCCCCCCeEEECCCCCCHHHHH
Confidence 3455554 4444443 344444455556788999999999765
No 205
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=27.23 E-value=15 Score=34.13 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=14.4
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
..|.-.|..|||||..+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46778999999999866
No 206
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=27.19 E-value=22 Score=42.62 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=17.8
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..++.|.|+ +..++||||||.+.
T Consensus 257 i~~il~g~~~--ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 257 AQPAINGKNA--LICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHcCCCE--EEEeCCCchHHHHH
Confidence 3445778874 56789999999774
No 207
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=27.14 E-value=25 Score=41.34 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=17.4
Q ss_pred HHhccCCeEEEEecccCCCCeeec
Q psy2748 97 NLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 97 ~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
++-.|....++..|+||||||...
T Consensus 383 ~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 383 DMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHSSSCCCCEEECCSSSSHHHHH
T ss_pred hccccCCCcEEEEcCCCCCHHHHH
Confidence 334455456778899999999765
No 208
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=27.12 E-value=32 Score=40.50 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.9
Q ss_pred hccCCeEEEEecccCCCCeeec
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm 120 (690)
-.+.|-||+.-|.+|||||.+.
T Consensus 136 ~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 136 VLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HHTCCEEEEEECSTTSSHHHHH
T ss_pred hcCCCcEEEEcCCCCCCceehH
Confidence 3689999999999999999875
No 209
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=27.01 E-value=27 Score=42.17 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=17.3
Q ss_pred HHHHhccCCeEEEEecccCCCCeee
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyT 119 (690)
|..++.|.+ ++..++||||||.+
T Consensus 48 I~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 48 VYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHcCCC--EEEEECCCCcHHHH
Confidence 445567765 67899999999954
No 210
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=26.76 E-value=42 Score=35.57 Aligned_cols=17 Identities=35% Similarity=0.753 Sum_probs=15.0
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
..+.-.|++|||||.|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46788999999999988
No 211
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=26.62 E-value=24 Score=41.28 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=17.8
Q ss_pred HHHHhccCCeEEEEecccCCCCeeec
Q psy2748 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 95 V~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+..++.|.| ++..++||||||.+.
T Consensus 257 i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCChHHHHH
Confidence 444577877 456789999999764
No 212
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=26.32 E-value=18 Score=40.85 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=16.0
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
+..++-.|..|||||+++.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp CSEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 4677789999999999874
No 213
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=26.03 E-value=18 Score=32.98 Aligned_cols=17 Identities=41% Similarity=0.675 Sum_probs=13.8
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
+...-||++|||||..|
T Consensus 24 g~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35678999999998765
No 214
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=26.00 E-value=22 Score=33.57 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=16.3
Q ss_pred ccCCeEEEEecccCCCCeeec
Q psy2748 100 HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyTm 120 (690)
.....+|+-.|.+|||||..+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 344567888999999998765
No 215
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=25.93 E-value=17 Score=33.62 Aligned_cols=17 Identities=35% Similarity=0.333 Sum_probs=13.9
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
..|+..|..|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999998744
No 216
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=25.82 E-value=16 Score=33.69 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=13.6
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
+..-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 6678999999999765
No 217
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=25.78 E-value=35 Score=40.26 Aligned_cols=74 Identities=23% Similarity=0.272 Sum_probs=51.0
Q ss_pred EEEecEEeCCCCChHHHHHHhhHHHHH-HHhccCC----eEEEEecccCCCCeeecC------CC-----------CCCC
Q psy2748 70 QYVFKKIFNVDVGQKQVYSEVAHPLVA-NLIHAKN----GLLLTYGVTGSGKTYTMN------GT-----------NSDG 127 (690)
Q Consensus 70 ~f~Fd~VF~~~asQ~evF~~v~~plV~-~~l~G~N----~~IfaYGqTGSGKTyTm~------G~-----------~~~~ 127 (690)
..+|+.|-|-+..-+++.+.+..||.. .++.++. ..|+-||+.|+|||...- |- ....
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 357888888887777787777767653 2444443 368899999999986541 21 1235
Q ss_pred ChHHHHHHHHHHHhcc
Q psy2748 128 GIMMRCIDVLFNSIGR 143 (690)
Q Consensus 128 GIiPR~l~~LF~~i~~ 143 (690)
|---..+..+|.....
T Consensus 280 gese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 280 GESESNLRKAFEEAEK 295 (806)
T ss_dssp THHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6677888888887654
No 218
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=25.76 E-value=33 Score=41.52 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=19.6
Q ss_pred hccCCeEEEEecccCCCCeeec
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm 120 (690)
-.+.|-||+.-|.+|||||.+.
T Consensus 168 ~~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 168 DDRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HHTCCEEEEEEESTTSSHHHHH
T ss_pred hcCCCeEEEEeCCCCCCcchHH
Confidence 3689999999999999999764
No 219
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=25.65 E-value=15 Score=35.01 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=13.6
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.+.-.|++|||||..|
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999877
No 220
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=25.60 E-value=16 Score=37.53 Aligned_cols=18 Identities=39% Similarity=0.713 Sum_probs=14.8
Q ss_pred eEEEEecccCCCCeeecC
Q psy2748 104 GLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~ 121 (690)
..|.-.|++|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 366667999999999983
No 221
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=25.52 E-value=35 Score=40.16 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.4
Q ss_pred ccCCeEEEEecccCCCCeeec
Q psy2748 100 HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyTm 120 (690)
++.|-||+.-|.+|||||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 689999999999999999875
No 222
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=25.47 E-value=35 Score=41.21 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.0
Q ss_pred hccCCeEEEEecccCCCCeeec
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm 120 (690)
-++.|-||+.-|.+|||||.+.
T Consensus 142 ~~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 142 QDREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HHCCCEEEEEECBTTSSHHHHH
T ss_pred hcCCCcEEEecCCCCCCchhhH
Confidence 3689999999999999999875
No 223
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=25.35 E-value=17 Score=34.01 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=13.4
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.|.-.|.+|||||..+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999998765
No 224
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=25.35 E-value=34 Score=42.07 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.4
Q ss_pred hccCCeEEEEecccCCCCeeec
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm 120 (690)
-.+.|-||+.-|.+|||||.+.
T Consensus 165 ~~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 165 QDREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HHTCCEEEECCCSTTSSTTHHH
T ss_pred hcCCCcEEEEecCCCCCccHHH
Confidence 3689999999999999999653
No 225
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=25.31 E-value=17 Score=34.52 Aligned_cols=17 Identities=35% Similarity=0.286 Sum_probs=14.8
Q ss_pred EEEEecccCCCCeeecC
Q psy2748 105 LLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm~ 121 (690)
.++-||..|||||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67889999999998874
No 226
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=25.28 E-value=33 Score=40.63 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=19.5
Q ss_pred ccCCeEEEEecccCCCCeeec
Q psy2748 100 HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyTm 120 (690)
++.|-||+.-|.+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 689999999999999999875
No 227
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=25.09 E-value=16 Score=34.43 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=12.5
Q ss_pred EEEecccCCCCeeec
Q psy2748 106 LLTYGVTGSGKTYTM 120 (690)
Q Consensus 106 IfaYGqTGSGKTyTm 120 (690)
+.-.|+.|||||..+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999866
No 228
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=25.05 E-value=21 Score=35.52 Aligned_cols=14 Identities=64% Similarity=0.722 Sum_probs=12.4
Q ss_pred EEEEecccCCCCee
Q psy2748 105 LLLTYGVTGSGKTY 118 (690)
Q Consensus 105 ~IfaYGqTGSGKTy 118 (690)
.|+-.|.+|||||.
T Consensus 3 li~I~G~~GSGKST 16 (253)
T 2ze6_A 3 LHLIYGPTCSGKTD 16 (253)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 57889999999986
No 229
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=24.80 E-value=30 Score=35.01 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=15.1
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
..++-||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 68889999999999766
No 230
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.74 E-value=3.1e+02 Score=30.21 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=14.7
Q ss_pred EEEeCCCCCCHHHHhhHHHHHhhhhce
Q psy2748 333 IVCVNPRVEDYDENLAVMKFAEMSQEV 359 (690)
Q Consensus 333 IvcVsP~~~~~~ETl~TLrFA~rak~I 359 (690)
+||-.+........+..|.....+...
T Consensus 391 ~cc~~~~~~~~~~~~~~l~~~~~~~~~ 417 (597)
T 3oja_B 391 LCCKESDKPYLDRLLQYIALTSVVEKV 417 (597)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHHHTC
T ss_pred ccccCCCccchhHHHHHhhHHHHhhcc
Confidence 556555555555555555555544433
No 231
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=24.62 E-value=38 Score=39.84 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.9
Q ss_pred hccCCeEEEEecccCCCCeeec
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm 120 (690)
-++.|-||+.-|.+|||||.+.
T Consensus 167 ~~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 167 TDRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HHTCCEEEEEECSTTSSHHHHH
T ss_pred hhCCCceEEEeCCCCCCCchHH
Confidence 3789999999999999999875
No 232
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=24.54 E-value=22 Score=34.44 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=9.4
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.|.-.|++|||||..+
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999876
No 233
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=24.40 E-value=21 Score=34.78 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=14.5
Q ss_pred hccCCeEEEEecccCCCCee
Q psy2748 99 IHAKNGLLLTYGVTGSGKTY 118 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTy 118 (690)
....-.++|-||..|||||.
T Consensus 16 ~~~~g~l~fiyG~MgsGKTt 35 (195)
T 1w4r_A 16 SKTRGQIQVILGPMFSGKST 35 (195)
T ss_dssp ---CCEEEEEEECTTSCHHH
T ss_pred CCCceEEEEEECCCCCcHHH
Confidence 33344589999999999993
No 234
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=24.37 E-value=18 Score=33.62 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=13.4
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.+.-.|+.|||||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4667899999999876
No 235
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=24.36 E-value=30 Score=41.98 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=17.3
Q ss_pred HHHHHhccCCeEEEEecccCCCCee
Q psy2748 94 LVANLIHAKNGLLLTYGVTGSGKTY 118 (690)
Q Consensus 94 lV~~~l~G~N~~IfaYGqTGSGKTy 118 (690)
.+..++.|.| ++..++||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 3445677876 5678999999994
No 236
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=24.31 E-value=22 Score=40.66 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=17.7
Q ss_pred CCeEEEEecccCCCCeeecC
Q psy2748 102 KNGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 102 ~N~~IfaYGqTGSGKTyTm~ 121 (690)
.++.++..|..|||||+||.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 46788899999999999996
No 237
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=24.29 E-value=25 Score=41.43 Aligned_cols=19 Identities=42% Similarity=0.480 Sum_probs=15.9
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
+..++..|+.|||||+|+.
T Consensus 375 ~~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 3457789999999999985
No 238
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=24.25 E-value=18 Score=39.26 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=19.6
Q ss_pred HhccCCeEEEEecccCCCCeeec
Q psy2748 98 LIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 98 ~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+++|++-.|.-.|.+|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 58899999999999999999755
No 239
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=24.24 E-value=41 Score=37.32 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=24.6
Q ss_pred EEEecccCCCCeeecC------CCC-----------CCCChHHHHHHHHHHHhc
Q psy2748 106 LLTYGVTGSGKTYTMN------GTN-----------SDGGIMMRCIDVLFNSIG 142 (690)
Q Consensus 106 IfaYGqTGSGKTyTm~------G~~-----------~~~GIiPR~l~~LF~~i~ 142 (690)
|+-||++|+|||+.+- +.+ ...|....-+..+|+...
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~ 120 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK 120 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHH
Confidence 8899999999998762 111 123555566777776543
No 240
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=24.19 E-value=18 Score=34.84 Aligned_cols=18 Identities=39% Similarity=0.409 Sum_probs=14.5
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
...+.-.|++|||||..+
T Consensus 30 G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CcEEEEEeCCCCCHHHHH
Confidence 345667999999999877
No 241
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=24.13 E-value=19 Score=36.91 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=16.4
Q ss_pred HhccCCeEEEEecccCCCCeeec
Q psy2748 98 LIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 98 ~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+++|++-.|...|.+|+|||..|
T Consensus 13 ~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 13 VKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp -----CEEEEEEEETTSSHHHHH
T ss_pred EEcCCCEEEEEECCCCCCHHHHH
Confidence 67888999999999999999765
No 242
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=24.11 E-value=25 Score=37.86 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=13.6
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678999999999874
No 243
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=23.92 E-value=27 Score=41.15 Aligned_cols=18 Identities=44% Similarity=0.501 Sum_probs=15.5
Q ss_pred eEEEEecccCCCCeeecC
Q psy2748 104 GLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~ 121 (690)
..++..|+.|||||+|+.
T Consensus 372 ~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 467789999999999974
No 244
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=23.63 E-value=23 Score=32.57 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.0
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
..|+-.|..|||||+..
T Consensus 4 ~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999998743
No 245
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=23.50 E-value=41 Score=36.76 Aligned_cols=19 Identities=47% Similarity=0.698 Sum_probs=16.5
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
-..|+..|.+|+|||+|+.
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 4678889999999999984
No 246
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=23.16 E-value=49 Score=33.92 Aligned_cols=17 Identities=41% Similarity=0.700 Sum_probs=13.8
Q ss_pred EEEEecccCCCCeeecC
Q psy2748 105 LLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm~ 121 (690)
.|...|..|+|||.++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 55667999999998873
No 247
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=23.08 E-value=14 Score=35.49 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=15.6
Q ss_pred eEEEEecccCCCCeeecCC
Q psy2748 104 GLLLTYGVTGSGKTYTMNG 122 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~G 122 (690)
...+-||..|||||..+.+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 3788899999999977643
No 248
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=23.03 E-value=18 Score=37.73 Aligned_cols=19 Identities=42% Similarity=0.496 Sum_probs=14.7
Q ss_pred ccCCeEEEEecccCCCCeeec
Q psy2748 100 HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyTm 120 (690)
.|. .+.-.|+||||||.++
T Consensus 170 ~g~--~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGK--NVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTC--CEEEEESTTSCHHHHH
T ss_pred CCC--EEEEECCCCCCHHHHH
Confidence 455 4556799999999876
No 249
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=22.84 E-value=42 Score=40.79 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.6
Q ss_pred hccCCeEEEEecccCCCCeeec
Q psy2748 99 IHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 99 l~G~N~~IfaYGqTGSGKTyTm 120 (690)
-.+.|-||+.-|.+|||||.+.
T Consensus 140 ~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 140 VLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HHTCCEEEEEECSTTSSHHHHH
T ss_pred HhCCCceEEEecCCCCCHHHHH
Confidence 3689999999999999999764
No 250
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=22.71 E-value=24 Score=33.35 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=13.6
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.|+-.|.+|||||...
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6788999999998654
No 251
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=22.55 E-value=21 Score=36.11 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=14.6
Q ss_pred CeEEEEecccCCCCeeec
Q psy2748 103 NGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm 120 (690)
+-++...|++|||||..|
T Consensus 2 ~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEEEESSSSSHHHHH
T ss_pred eeEEEEECCCCCCHHHHH
Confidence 446778899999999755
No 252
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=22.46 E-value=34 Score=38.04 Aligned_cols=17 Identities=47% Similarity=0.651 Sum_probs=14.8
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
..|.-.|++|||||.++
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 46778899999999988
No 253
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=22.30 E-value=24 Score=31.76 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=13.2
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.|+-.|..|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778999999998744
No 254
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=22.25 E-value=21 Score=33.97 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=13.0
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
++.-.|++|||||..+
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999876
No 255
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=22.22 E-value=20 Score=34.18 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.5
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.+.-.|++|||||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 4567899999999877
No 256
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=22.15 E-value=28 Score=37.86 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=13.4
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.++..++||||||...
T Consensus 23 ~vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKI 38 (459)
T ss_dssp EEEECCCTTSCTTTTH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5678899999999873
No 257
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=22.07 E-value=61 Score=35.26 Aligned_cols=19 Identities=42% Similarity=0.550 Sum_probs=15.5
Q ss_pred CeEEEEecccCCCCeeecC
Q psy2748 103 NGLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 103 N~~IfaYGqTGSGKTyTm~ 121 (690)
...|+..|.+|||||+|+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp SEEEEECCCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3567777999999999873
No 258
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=21.82 E-value=53 Score=34.94 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=17.6
Q ss_pred ccCCeEEEEecccCCCCeeec
Q psy2748 100 HAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyTm 120 (690)
.|.-..|+-+|..|||||...
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 566667889999999999865
No 259
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=21.61 E-value=25 Score=32.52 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.4
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47889999999998754
No 260
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=21.42 E-value=23 Score=32.14 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=13.4
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.|+-.|..|||||...
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999998754
No 261
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=21.39 E-value=26 Score=35.57 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=15.2
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
..++-||+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58999999999999866
No 262
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=21.39 E-value=27 Score=37.81 Aligned_cols=21 Identities=24% Similarity=0.176 Sum_probs=16.0
Q ss_pred HhccCCeEEEEecccCCCCeeec
Q psy2748 98 LIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 98 ~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
+++|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 345665 567899999999874
No 263
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=21.37 E-value=21 Score=40.42 Aligned_cols=18 Identities=50% Similarity=0.643 Sum_probs=15.1
Q ss_pred eEEEEecccCCCCeeecC
Q psy2748 104 GLLLTYGVTGSGKTYTMN 121 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm~ 121 (690)
.-++..|.||||||+.|.
T Consensus 215 pHlLIaG~TGSGKS~~L~ 232 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVN 232 (574)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CeeEEECCCCCCHHHHHH
Confidence 457889999999998763
No 264
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=21.28 E-value=2.1e+02 Score=27.16 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2748 447 QSKMQAQAETYESKLRHNEKKVIRKVKNLIDS 478 (690)
Q Consensus 447 ~~kl~~~~ek~e~kl~~~eek~L~qlk~il~~ 478 (690)
+..++++++.|++||+.-++. .+.-.+.|.+
T Consensus 18 e~l~~el~~tWeeKl~~te~~-~~e~~~~l~~ 48 (184)
T 4egx_A 18 EKIIAELNETWEEKLRRTEAI-RMEREALLAE 48 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHH
Confidence 445777888888888776655 5455555544
No 265
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=21.20 E-value=24 Score=40.81 Aligned_cols=14 Identities=50% Similarity=0.842 Sum_probs=12.7
Q ss_pred EEEEecccCCCCee
Q psy2748 105 LLLTYGVTGSGKTY 118 (690)
Q Consensus 105 ~IfaYGqTGSGKTy 118 (690)
.++..|+||||||+
T Consensus 157 ~vlv~apTGSGKT~ 170 (677)
T 3rc3_A 157 IIFHSGPTNSGKTY 170 (677)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 57889999999998
No 266
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=21.05 E-value=27 Score=36.11 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=15.1
Q ss_pred eEEEEecccCCCCeeec
Q psy2748 104 GLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyTm 120 (690)
..|+-.|++|||||.|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46788999999999988
No 267
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=20.98 E-value=31 Score=32.12 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=15.4
Q ss_pred ccCCeEEEEecccCCCCeee
Q psy2748 100 HAKNGLLLTYGVTGSGKTYT 119 (690)
Q Consensus 100 ~G~N~~IfaYGqTGSGKTyT 119 (690)
.+..-.|.-.|..|||||..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTV 24 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHH
T ss_pred ccCceEEEEECCCCCCHHHH
Confidence 34556788999999999864
No 268
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=20.96 E-value=27 Score=32.43 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=15.0
Q ss_pred CCeEEEEecccCCCCeeec
Q psy2748 102 KNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 102 ~N~~IfaYGqTGSGKTyTm 120 (690)
....|+-.|..|||||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456788999999998754
No 269
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=20.92 E-value=27 Score=32.15 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.4
Q ss_pred eEEEEecccCCCCeee
Q psy2748 104 GLLLTYGVTGSGKTYT 119 (690)
Q Consensus 104 ~~IfaYGqTGSGKTyT 119 (690)
-.|+-.|..|||||+.
T Consensus 4 ~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3688899999999874
No 270
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=20.82 E-value=25 Score=40.41 Aligned_cols=30 Identities=30% Similarity=0.259 Sum_probs=20.1
Q ss_pred ChHHHHHHhhHHHHHHHhccCCeEEEEecccCCCCeeec
Q psy2748 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120 (690)
Q Consensus 82 sQ~evF~~v~~plV~~~l~G~N~~IfaYGqTGSGKTyTm 120 (690)
-|.+++... +.+|.| ++..|+||||||...
T Consensus 27 ~Q~~~i~~~-------~~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 27 PQAEALKSG-------ILEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp HHHHHHTTT-------GGGTCE--EEEECCGGGCHHHHH
T ss_pred HHHHHHHHH-------hcCCCc--EEEEcCCccHHHHHH
Confidence 365555542 344544 778999999999664
No 271
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=20.50 E-value=22 Score=34.45 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=12.9
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.+.-.|++|||||..+
T Consensus 25 ~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLI 40 (218)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4456799999999876
No 272
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=20.21 E-value=26 Score=33.25 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.0
Q ss_pred EEEEecccCCCCeeec
Q psy2748 105 LLLTYGVTGSGKTYTM 120 (690)
Q Consensus 105 ~IfaYGqTGSGKTyTm 120 (690)
.|+-.|++|||||..+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999998644
Done!