RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2748
(690 letters)
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 168 bits (427), Expect = 1e-46
Identities = 92/371 (24%), Positives = 153/371 (41%), Gaps = 86/371 (23%)
Query: 24 PLQVFCRIRPM---DNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVD 80
++V RIRP+ ++ +ESCI+V + TV LTPP + F +F+ +
Sbjct: 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGR----KAGPKSFTFDHVFDPN 56
Query: 81 VGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNS 140
Q+ VY A PLV +++ NG + YG TGSGKTYTM G+ D GI+ R ++ LFN
Sbjct: 57 STQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNL 116
Query: 141 IGRYQPRKRTFRPDKLNGFEVQSQVDI-------LLQEQAEMNGELTKRTPGPGLKRNKS 193
I + + ++F V S ++I LL + +
Sbjct: 117 IDERKEKNKSFS------VSV-SYLEIYNEKVYDLLSPEPPSKP-----------LSLRE 158
Query: 194 DPEMEPRIKDASKVEDIEEDNVY-------------------------SVFVSYIEIYNN 228
DP+ +K ++VE ++ ++F ++E N
Sbjct: 159 DPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNT 218
Query: 229 SVHDLLEDMPEGNNARIQL-----NNRLIREDGDKNMFVHGVNEIEVTTPDEAFQSIGNI 283
+ D ++++ L + R + + + EA ++I
Sbjct: 219 T-----NDGRSIKSSKLNLVDLAGSERAKKTGAEGDRL------------KEA-KNI--- 257
Query: 284 NNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDY 343
N SL L + L Q K P+R+SKLT L + G+ MI ++P E+Y
Sbjct: 258 NKSLSALGNVISALSSGQ---KKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENY 314
Query: 344 DENLAVMKFAE 354
DE L+ ++FA
Sbjct: 315 DETLSTLRFAS 325
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 167 bits (424), Expect = 3e-46
Identities = 90/367 (24%), Positives = 147/367 (40%), Gaps = 78/367 (21%)
Query: 30 RIRPMDNSYDESCISVVSDTTVQLTPPDG-SNPRYFNNKEVQYVFKKIFNVDVGQKQVYS 88
R+RP+ N ++S S + D S +E + F ++F+ + Q+ VY
Sbjct: 1 RVRPL-NEREKSRGSSDIVNVDETDSEDKESVVITNKGREKTFTFDRVFDPEATQEFVYE 59
Query: 89 EVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG--GIMMRCIDVLFNSIGRYQP 146
E A PLV +++ N + YG TGSGKTYTM G + GI+ R ++ LF I
Sbjct: 60 ETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGDPPEEEPGIIPRALEDLFERIEE--- 116
Query: 147 RKRTFRPDKLNGFEVQ-SQVDILLQEQAEMNGE----LTKRTPGPGLKRNKSDPEMEPRI 201
R ++ F V+ S ++I N + L+ + L R + DP+ +
Sbjct: 117 -----RKERKWSFSVRVSYLEI-------YNEKIYDLLSPSSKKKKL-RIREDPKKGVYV 163
Query: 202 KDASKVEDIEEDNVY-------------------------SVFVSYIEIYNNSVHDLLED 236
K ++VE + V ++F +E N
Sbjct: 164 KGLTEVEVTSAEEVLELLELGNKNRTVASTNMNEESSRSHAIFTITVEQRNRD------- 216
Query: 237 MPEGNNARIQLNNRLI----REDGDKNMFVHGVNEIEVTTPDEAFQSIGNINNSLMTLRT 292
+G+ +LN L+ E K EA NIN SL L
Sbjct: 217 -TDGSVKTGKLN--LVDLAGSERASK------TGAAGGRRLKEA----ANINKSLSALGN 263
Query: 293 CLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKF 352
+ L ENQ + P+R+SKLT L + G+ MI ++P +Y+E L+ ++F
Sbjct: 264 VINALAENQ----SSHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSDSNYEETLSTLRF 319
Query: 353 AEMSQEV 359
A ++ +
Sbjct: 320 ASRAKNI 326
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 158 bits (402), Expect = 4e-43
Identities = 63/130 (48%), Positives = 84/130 (64%), Gaps = 8/130 (6%)
Query: 23 DPLQVFCRIRPM----DNSYDESCISVVSDTTVQLTPPDGS----NPRYFNNKEVQYVFK 74
DP++V+ R+RP+ S DE CI V++ TT+QL PP GS + R KE ++ F
Sbjct: 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFS 60
Query: 75 KIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCI 134
K+F + QK+ + A PLV +L+ KN LL TYGVT SGKTYTM G+ DGGI+ R +
Sbjct: 61 KVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSL 120
Query: 135 DVLFNSIGRY 144
DV+FNSIG Y
Sbjct: 121 DVIFNSIGGY 130
Score = 141 bits (358), Expect = 4e-37
Identities = 52/84 (61%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Query: 275 EAFQSIGNINNSLMTLRTCLEILRENQLQG-TNKIPPFRESKLTHLFKSYFTGDGDVRMI 333
E + GNIN SLMTL C+E+LRENQL G TNK+ P+R+SKLTHLF++YF G+G RMI
Sbjct: 262 ERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMI 321
Query: 334 VCVNPRVEDYDENLAVMKFAEMSQ 357
V VNP DYDE L VMKF+ ++Q
Sbjct: 322 VNVNPCASDYDETLHVMKFSAIAQ 345
Score = 77.4 bits (191), Expect = 3e-15
Identities = 30/62 (48%), Positives = 45/62 (72%), Gaps = 3/62 (4%)
Query: 216 YSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVTTPDE 275
YSVFVSY+EIYNN ++DLLED P ++ + + +RED + NM+V G+ E+EV++ +E
Sbjct: 130 YSVFVSYVEIYNNYIYDLLEDSP---SSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEE 186
Query: 276 AF 277
A
Sbjct: 187 AR 188
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 105 bits (264), Expect = 1e-24
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Query: 24 PLQVFCRIRPMD----NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNV 79
++V R+RP++ + S + LT N E ++ F K+F+
Sbjct: 1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVGKTLTVRSPKNR----QGEKKFTFDKVFDA 56
Query: 80 DVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFN 139
Q+ V+ E A PLV +++ N + YG TGSGKTYTM GT GI+ R + LF
Sbjct: 57 TASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMIGTPDSPGIIPRALKDLFE 116
Query: 140 SIGRYQPRK 148
I + +
Sbjct: 117 KIDKREEGW 125
Score = 81.1 bits (201), Expect = 2e-16
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
GNIN SL L + L ++ IP +R+SKLT L + G+ MI V+P
Sbjct: 253 GNINKSLSALGNVINALAQHSKSR--HIP-YRDSKLTRLLQDSLGGNSKTLMIANVSPSS 309
Query: 341 EDYDENLAVMKFAEMSQEVQISKA 364
+ +E L+ ++FA ++E++
Sbjct: 310 SNLEETLSTLRFASRAKEIKNKPI 333
Score = 63.7 bits (156), Expect = 8e-11
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 206 KVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGV 265
K++ EE +SV VSY+EIYN + DLL IRED ++V G+
Sbjct: 117 KIDKREEGWQFSVKVSYLEIYNEKIRDLLNPSS---------KKLEIREDEKGGVYVKGL 167
Query: 266 NEIEVTTPDEAFQ 278
EI V++ +E +
Sbjct: 168 TEISVSSFEEVYN 180
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 96.6 bits (241), Expect = 1e-21
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 8/125 (6%)
Query: 25 LQVFCRIRPMDNSY----DESCISVVSDTTVQLTPPD----GSNPRYFNNKEVQYVFKKI 76
L V R+RP + + VV D + P D N R NKE++Y F ++
Sbjct: 2 LTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRV 61
Query: 77 FNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDV 136
F+ Q++VY PLV +++ N + YG TG+GKT+TM GT+SD G+M+ +
Sbjct: 62 FDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKD 121
Query: 137 LFNSI 141
LF+ I
Sbjct: 122 LFDKI 126
Score = 55.4 bits (134), Expect = 4e-08
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 205 SKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHG 264
K+E+ ++D + V +SY+EIYN ++ DLL P L +RED ++ + V G
Sbjct: 124 DKIEERKDDKEFEVSLSYLEIYNETIRDLLS--PSSG----PLE---LREDPNQGIVVAG 174
Query: 265 VNEIEVTTPDEAFQSI--GNIN 284
+ E + + +E + + GN N
Sbjct: 175 LTEHQPKSAEEILELLMKGNRN 196
Score = 48.0 bits (115), Expect = 8e-06
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 282 NINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVE 341
NIN SL+ L C+ L + + NK P+R+SKLT L K G+ MI ++P
Sbjct: 263 NINRSLLALGNCINALVDGK--KKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSS 320
Query: 342 DYDENLAVMKFA 353
Y+E +K+A
Sbjct: 321 HYEETHNTLKYA 332
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 94.3 bits (235), Expect = 5e-21
Identities = 85/373 (22%), Positives = 143/373 (38%), Gaps = 97/373 (26%)
Query: 22 SDPLQVFCRIRPMDNSYDE----SCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIF 77
++V CR RP++ + S + + TV + D + F ++F
Sbjct: 1 ECNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKT---------FSFDRVF 51
Query: 78 NVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG---GIMMRCI 134
+ Q+ VY+ VA P+V ++++ NG + YG TGSGKTYTM G D GI+ R +
Sbjct: 52 PPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIV 111
Query: 135 DVLFNSIGRYQPRKRTFRPDKLNGFEVQ-SQVDILLQEQAEMNGELTKRTPGPGLKRNKS 193
+F I F V+ S ++I
Sbjct: 112 HDIFEHISSMDENLE---------FHVKVSYLEIY------------------------- 137
Query: 194 DPEMEPRIKDASKVED----IEEDNVYSVFVSYI-EIYNNSVHDLLEDMPEGNNARI--- 245
ME +I+D V + ED V+V + E + +S ++LE + EG + R
Sbjct: 138 ---ME-KIRDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVAS 193
Query: 246 -QLNNR-------LIREDGDKNMFVHGV------------NEI------EVTTPDEAFQS 279
+N + +N+ +E E T +EA
Sbjct: 194 TNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEA--- 250
Query: 280 IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPR 339
IN SL L + L + G + P+R+SKLT + + G+ +I+C +P
Sbjct: 251 -KKINKSLSALGNVINALTD----GKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPS 305
Query: 340 VEDYDENLAVMKF 352
+ E L+ ++F
Sbjct: 306 SYNESETLSTLRF 318
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 92.4 bits (230), Expect = 3e-20
Identities = 85/372 (22%), Positives = 148/372 (39%), Gaps = 74/372 (19%)
Query: 26 QVFCRIRPM---DNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIF-NVD- 80
+V R+RP + + CI + L P ++ K + F + + D
Sbjct: 4 KVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADAT--RKKPKSFSFDHSYWSHDS 61
Query: 81 -----VGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCID 135
Q+ V+ ++ L+ + N L YG TGSGK+YTM G + GI+ R +
Sbjct: 62 EDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCE 121
Query: 136 VLFNSIGRYQPRKRTFRPDKLNGFEV-QSQVDILLQEQAEMNGELTKRTPGPGLKRNKSD 194
LF I + + ++ +++ E+ +V L L + G + +
Sbjct: 122 ELFQRIESKKEQNLSYEV-EVSYMEIYNEKVRDL----------LNPKKKNKGNLKVREH 170
Query: 195 PEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNAR---------- 244
P + P ++D SKV SY +I N LLE EGN +R
Sbjct: 171 PVLGPYVEDLSKV----------AVTSYEDIQN-----LLE---EGNKSRTTASTNMNDT 212
Query: 245 ---------IQLNNRLIREDGD-KNMFVHGVNEIEVTTPDEAFQSIG---------NINN 285
I L + + ++ D V ++ +++ + A + NIN
Sbjct: 213 SSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINK 272
Query: 286 SLMTLRTCLEILRENQLQGTNK---IPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVED 342
SL TL + L +N + K P+R+S LT L K G+ MI ++P +
Sbjct: 273 SLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADIN 332
Query: 343 YDENLAVMKFAE 354
Y+E L+ +++A+
Sbjct: 333 YEETLSTLRYAD 344
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 91.4 bits (227), Expect = 5e-20
Identities = 85/368 (23%), Positives = 140/368 (38%), Gaps = 83/368 (22%)
Query: 24 PLQVFCRIRPM--DNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDV 81
++V R+RP SC+ + Q + NPR + +Y F + +
Sbjct: 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRN-RGETKKYQFDAFYGTEC 59
Query: 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSI 141
Q+ ++S P+V +L+ +N + YG TG+GKT+TM G ++ G++ R + L +
Sbjct: 60 TQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLL-RM 118
Query: 142 GRYQPRKRTFRPDKLNGFEV-QSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPR 200
GR Q F ++ +E+ +V LL EP
Sbjct: 119 GRKQAWTGAF---SMSYYEIYNEKVYDLL----------------------------EPA 147
Query: 201 IKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI----QLNNRLIREDG 256
K+ ED + N+ V ++ I S+ + E + R +LN+ R
Sbjct: 148 KKELPIREDK-DGNILIVGLTSKPI--KSMAEFEEAYIPASKNRTVAATKLNDNSSRS-- 202
Query: 257 DKNMFVHGVNEIEVTTPDEAFQSIGN---------------------------INNSLMT 289
H V I+VT P Q G IN+SL
Sbjct: 203 ------HAVLRIKVTQPASNIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFV 256
Query: 290 LRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAV 349
L ++ L +G +I P+RESKLT L + G M+ + P Y + L+
Sbjct: 257 LSKVVDAL----NKGLPRI-PYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLST 311
Query: 350 MKFAEMSQ 357
+ FA S+
Sbjct: 312 LNFASRSK 319
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 90.8 bits (226), Expect = 7e-20
Identities = 84/360 (23%), Positives = 145/360 (40%), Gaps = 67/360 (18%)
Query: 26 QVFCRIRPMD--NSYDESCI-SVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVG 82
+V R+RP++ S +E S+ +D T+ L + F ++F +
Sbjct: 3 KVSVRVRPLNPRESDNEQVAWSIDNDNTISLEESTPGQS---------FTFDRVFGGEST 53
Query: 83 QKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIG 142
++VY +A P+V + + NG + YG T SGKT+TM+G + GI+ + +F I
Sbjct: 54 NREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQ 113
Query: 143 RYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIK 202
R+ R L E+ E K P + E RI+
Sbjct: 114 DTPDREFLLRVSYL-----------------EIYNEKIKDLLSPSPQ--------ELRIR 148
Query: 203 DAS----KVEDIEEDNVYSV--FVSYIEIYNNSVHDLLEDMPEGNNAR---------IQL 247
+ V + E+ V S + I + H D N R + +
Sbjct: 149 EDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDF----NERSSRSHTIFQLTI 204
Query: 248 NNRLIREDGDKNMFVHGVNEIEVTTPDEAFQSIG--------NINNSLMTLRTCLEILRE 299
+R + + V +N I++ + A Q+ IN SL+TL T + L E
Sbjct: 205 ESRERGDSESGTVRVSTLNLIDLAGSERASQTGAGERRKEGSFINKSLLTLGTVISKLSE 264
Query: 300 NQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEV 359
+ G I P+R+SKLT + + +G+ +I ++P +E L +KFA +++V
Sbjct: 265 GKNSG--HI-PYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 86.9 bits (216), Expect = 2e-18
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 14/131 (10%)
Query: 27 VFCRIRPM--DNSYDESC---ISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDV 81
VFCR+RP+ S + S T++L+ G K+ + F ++F+ D
Sbjct: 6 VFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTG--------KKKSFSFDRVFDPDA 57
Query: 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSI 141
Q+ V+ EV+ PLV + + N + YG TGSGKTYTM G + GI+ R ++ LFN+
Sbjct: 58 SQEDVFEEVS-PLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTA 116
Query: 142 GRYQPRKRTFR 152
+ + ++
Sbjct: 117 EELKEKGWSYT 127
Score = 51.8 bits (125), Expect = 6e-07
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 282 NINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVE 341
IN SL L + LR + +P +R SKLT+L + G+ M V ++P
Sbjct: 254 AINKSLSALGDVISALR----SKDSHVP-YRNSKLTYLLQDSLGGNSKTLMFVNISPLES 308
Query: 342 DYDENLAVMKFAE 354
+ E L ++FA
Sbjct: 309 NLSETLCSLRFAS 321
Score = 44.5 bits (106), Expect = 1e-04
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 208 EDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNE 267
E E+ Y++ S +EIYN ++ DLL + +L I+ D +V + E
Sbjct: 118 ELKEKGWSYTITASMLEIYNETIRDLLA---TKPAPKKKLE---IKHDSKGETYVTNLTE 171
Query: 268 IEVTTPDEAFQ 278
+ V++P+E +
Sbjct: 172 VPVSSPEEVTR 182
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 84.0 bits (208), Expect = 2e-17
Identities = 79/373 (21%), Positives = 141/373 (37%), Gaps = 88/373 (23%)
Query: 23 DPLQVFCRIRPMDN-SYDESCISVVSDT----TVQLTPPDGSN---PRYFNNKEVQYVFK 74
+ ++V R RP++ E +V V + P P+ F F
Sbjct: 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVF-------TFD 53
Query: 75 KIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG---GIMM 131
+++ + Q+ VY+E A PLV +++ NG + YG TG+GKT+TM G GI+
Sbjct: 54 AVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIP 113
Query: 132 RCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQ-SQVDILLQEQAEMNGELTKRTPGPGLKR 190
+F I + + + F V+ S ++I +E ++ G
Sbjct: 114 NSFAHIFGHIAKAENVQ----------FLVRVSYLEIYNEEVRDLLG------------- 150
Query: 191 NKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYN-NSVHDLLEDMPEGNNARIQLNN 249
KD K +++E V+V + ++ + ++ + M GN R +
Sbjct: 151 -----------KDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNR-SVGA 198
Query: 250 RLIREDGDKN--MFVHGVNEIEVTTPDEAFQSIG-------------------------- 281
+ ED ++ +F + E E +G
Sbjct: 199 TNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEA 258
Query: 282 -NINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
IN SL L + L + G + P+R+SKLT L + G+ M + P
Sbjct: 259 TKINLSLSALGNVISALVD----GKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPAD 314
Query: 341 EDYDENLAVMKFA 353
+YDE L+ +++A
Sbjct: 315 YNYDETLSTLRYA 327
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 77.5 bits (191), Expect = 2e-15
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 24/140 (17%)
Query: 23 DPLQVFCRIRP-----MDNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIF 77
++V RIRP D + C+ +S T+ PR F F +
Sbjct: 1 PAVKVVVRIRPPNEIEADGGQGQ-CLKKLSSDTLVWH---SHPPRMFT-------FDHVA 49
Query: 78 NVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG--------TNSDGGI 129
+ + Q+ V+ V PLV + + NG + YG TGSGKTYTM G + G+
Sbjct: 50 DSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGV 109
Query: 130 MMRCIDVLFNSIGRYQPRKR 149
+ R + LF+ I R + ++
Sbjct: 110 IPRIFEYLFSLIQREEEKRG 129
Score = 42.8 bits (101), Expect = 3e-04
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
NIN SL TL + L + G + P+R+SKLT L + G+ +I V+P
Sbjct: 260 KNINKSLSTLGHVIMALVDVA-HGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSS 318
Query: 341 EDYDENLAVMKFAE 354
+ + E L+ +KFA+
Sbjct: 319 KCFGETLSTLKFAQ 332
Score = 36.7 bits (85), Expect = 0.031
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 208 EDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNE 267
E + + S++EIYN + DLL+ P N + IRED K ++V + E
Sbjct: 126 EKRGDGLKFLCKCSFLEIYNEQITDLLD--PTSRNLK-------IREDIKKGVYVENLTE 176
Query: 268 IEVTTPDEAFQ 278
V++ ++ +Q
Sbjct: 177 EYVSSYEDVYQ 187
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 74.6 bits (184), Expect = 2e-14
Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 21/137 (15%)
Query: 24 PLQVFCRIRPM----DNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNV 79
++V R+RP+ + C+SVV P+ + + F +F+
Sbjct: 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGE-----------PQVTVGTDKSFTFDYVFDP 50
Query: 80 DVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG------GIMMRC 133
Q++VY+ PLV L N +L YG TGSGKTYTM + GI+ R
Sbjct: 51 STSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRA 110
Query: 134 IDVLFNSIGRYQPRKRT 150
I +F I +
Sbjct: 111 IQHIFKKIDEKKDEPDF 127
Score = 48.1 bits (115), Expect = 1e-05
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 205 SKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHG 264
K+++ +++ + + VS++E+YN V DLL + IQ IRED N+ + G
Sbjct: 116 KKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSE-KSPIQ-----IREDSKGNIIIVG 169
Query: 265 VNEIEVTTPDEA 276
+ E+ V + E
Sbjct: 170 LTEVTVNSAQEV 181
Score = 42.3 bits (100), Expect = 7e-04
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 282 NINNSLMTLRTCLEILRENQLQGTNKIP---PFRESKLTHLFKSYFTGDGDVRMIVCVNP 338
+IN+ L+ L + + L +K P+R+SKLT L + G+ MI CV+P
Sbjct: 265 SINSGLLALGNVI-----SALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSP 319
Query: 339 RVEDYDENLAVMKFA 353
+++E L +K+A
Sbjct: 320 ADSNFEETLNTLKYA 334
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 73.3 bits (180), Expect = 5e-14
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 24 PLQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFK--KIFNVDV 81
+QVF R+RP S +V P NN++ + FK +F+ +
Sbjct: 1 TIQVFVRVRPTPTKQGSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFH-NA 59
Query: 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG---TNSDGGIMMRCIDVLF 138
Q++VY VA P+V + + NG + YG TG+GKT+TM G + D G++ R ++ +F
Sbjct: 60 SQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVF 119
Query: 139 NSIGR 143
+
Sbjct: 120 REVAM 124
Score = 43.6 bits (103), Expect = 2e-04
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 213 DNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVTT 272
Y+V VSY+EIYN ++DLL D PE A L I ED ++N+ V G++ TT
Sbjct: 127 TKTYTVHVSYLEIYNEQLYDLLGDTPE---ALESLPAVTILEDSEQNIHVKGLSLHSATT 183
Query: 273 PDEAF 277
+EA
Sbjct: 184 EEEAL 188
Score = 34.4 bits (79), Expect = 0.20
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 283 INNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVED 342
IN SL L + L E P+R SKLTH+ + G+ M+ + +
Sbjct: 264 INKSLSFLEQVINALSEKARTHV----PYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSN 319
Query: 343 YDENLAVMKFA 353
DE L+ ++FA
Sbjct: 320 LDETLSTLRFA 330
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 66.1 bits (162), Expect = 1e-11
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 25/132 (18%)
Query: 25 LQVFCRIRPM-DNSYDESCISVVS------DTTVQLTPPDGSNPRYFNNKEVQYVFKKIF 77
+QV R RP E VV + V D + + Y F K+F
Sbjct: 4 IQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTK-------TYTFDKVF 56
Query: 78 NVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG-----------TNSD 126
+ Q +VYS+V P++ ++ N + YG TG+GKTYTM G +
Sbjct: 57 GPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPH 116
Query: 127 GGIMMRCIDVLF 138
GI+ R + LF
Sbjct: 117 AGIIPRALYQLF 128
Score = 41.5 bits (98), Expect = 0.001
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 205 SKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHG 264
K+E + YSV VSY+E+YN + DLL + N ++ + + + G
Sbjct: 129 EKLESQNTE--YSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDT----NNKGGVVIQG 182
Query: 265 VNEIEVTTPDEAFQ 278
+ EI V +E +
Sbjct: 183 LEEITVNNANEGLK 196
Score = 37.6 bits (88), Expect = 0.017
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
GNIN SL+TL + L E + IP +RESKLT L + G +I ++P
Sbjct: 270 GNINQSLLTLGRVINALVEK----SPHIP-YRESKLTRLLQDSLGGRTKTSIIATISPAS 324
Query: 341 EDYDENLAVMKFA 353
+ +E L+ +++A
Sbjct: 325 INLEETLSTLEYA 337
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 62.3 bits (152), Expect = 2e-10
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
Query: 23 DPLQVFCRIRPMDNS----YDESCISVVSDTTVQL----TPPDGSNPRYFNNKEVQYVFK 74
+ V R RP+++ + +S S+ TV + T D + +Y + F
Sbjct: 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLT--KYIEKHT--FRFD 56
Query: 75 KIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCI 134
+F+ V ++VY PL+ ++ YG TGSGKTYTM G + G+
Sbjct: 57 YVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAA 116
Query: 135 DVLFNSIGRYQ 145
+F + +
Sbjct: 117 RDIFRLLAQPN 127
Score = 53.4 bits (129), Expect = 1e-07
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 282 NINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVE 341
IN SL+ L+ C+ L N+ +P FR SKLT + + F G+ MI ++P
Sbjct: 252 EINKSLLALKECIRALASNK----AHVP-FRGSKLTQVLRDSFIGNSKTVMIATISPSAS 306
Query: 342 DYDENLAVMKFAEM 355
+ L +++A+
Sbjct: 307 SCEHTLNTLRYADR 320
Score = 49.9 bits (120), Expect = 2e-06
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 216 YSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVTTPDE 275
V VS+ EIY + DLL D R+ + EDG N+ + G+ E VT+ DE
Sbjct: 130 LGVTVSFFEIYGGKLFDLLND-----RKRLS-----VLEDGKGNVQIVGLTEKPVTSVDE 179
Query: 276 AFQSIGNINNSLMTLRTC 293
+ I S +LRT
Sbjct: 180 LLELI----ESGNSLRTT 193
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 61.3 bits (149), Expect = 9e-10
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 67 KEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSD 126
KE Y F K+F Q+ VY E PL+ +L+ N + YG TGSGKTYTM+GT +
Sbjct: 54 KEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEE 113
Query: 127 GGIMMRCIDVLFNSI 141
GI+ + LF+ +
Sbjct: 114 PGIIPLSLKELFSKL 128
Score = 58.2 bits (141), Expect = 8e-09
Identities = 41/200 (20%), Positives = 86/200 (43%), Gaps = 11/200 (5%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
+IN SL+TL + L + + G P+RESKLT L + G+ + R+I ++P
Sbjct: 261 ASINKSLLTLGNVINALGDKKKSG---HIPYRESKLTRLLQDSLGGNCNTRVICTISPSS 317
Query: 341 EDYDENLAVMKFAEMSQEVQISKALPSRLDFGLTPGRRKF-NEASKKMREILNNEKKMES 399
++E + +KFA ++ ++ + S D KF + EIL ++ +
Sbjct: 318 NSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQSQL 377
Query: 400 LASAMPLIDSGVLYRLRKDVHVERLRMMKERQEEKTKATKSKLSQKFQSKMQAQAETYES 459
S++ I + + + +K R + K+ S ++ + ++ + Y+S
Sbjct: 378 SQSSLSGIFAYMQ------SLKKETETLKSRIDLIMKSIISGTFER-KKLLKEEGWKYKS 430
Query: 460 KLRHNEKKVIRKVKNLIDSQ 479
L+ ++ R + +
Sbjct: 431 TLQFLRIEIDRLLLLREEEL 450
Score = 40.9 bits (96), Expect = 0.002
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 205 SKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRL 251
SK+ED+ ++V +SY+EIYN ++DLL E N R +
Sbjct: 126 SKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGV 172
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 44.9 bits (106), Expect = 1e-04
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 275 EAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIV 334
+ + GNIN SL L + IL E G + P+R+S+LT L + G+ + M+
Sbjct: 350 DRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVC 409
Query: 335 CVNPRVEDYDENLAVMKFAEMSQEVQ 360
++P E + ++FA+ ++ ++
Sbjct: 410 AISPSQSCKSETFSTLRFAQRAKAIK 435
Score = 44.9 bits (106), Expect = 1e-04
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 14 AFSQNNGSSDPLQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVF 73
+N S ++V R++P++ + + VQ D + F
Sbjct: 89 TAPENGVSDSGVKVIVRMKPLNKGEEG-------EMIVQKMSNDS-----LTINGQTFTF 136
Query: 74 KKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG 122
I + + Q+ ++ V PLV N + N + YG TGSGKTYTM G
Sbjct: 137 DSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWG 185
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 41.8 bits (98), Expect = 3e-04
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 86 VYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVL 137
V+ +V PL+ + + N + YG TGSGKTYTM G GI+ R + +
Sbjct: 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTDV 58
Score = 38.3 bits (89), Expect = 0.006
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 264 GVNEIEVTTPDEAFQSIG-NINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKS 322
G I+ + + + + NIN SL TL + L E P+RESKLT L +
Sbjct: 116 GSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSH-----VPYRESKLTRLLQD 170
Query: 323 YFTGDGDVRMIVCVNP 338
G+ M+ C++P
Sbjct: 171 SLGGNSRTLMVACISP 186
>gnl|CDD|225364 COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase
PilT [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 353
Score = 37.6 bits (88), Expect = 0.018
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 93 PLVANLIHAKNGLLLTYGVTGSGKTYTM 120
P+V L + GL+L G TGSGK+ T+
Sbjct: 115 PIVRELAESPRGLILVTGPTGSGKSTTL 142
>gnl|CDD|225363 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
assembly pathway, ATPase PilB [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 500
Score = 35.8 bits (83), Expect = 0.078
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 83 QKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120
+K S + L++ GL+L G TGSGKT T+
Sbjct: 238 EKLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL 275
>gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional.
Length = 652
Score = 35.0 bits (82), Expect = 0.13
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 9/31 (29%)
Query: 94 LVANLIHAKNGL----LLTYGVTGSGKTYTM 120
LV + + G LL GVTGSGKT+TM
Sbjct: 24 LVEGI---EAGEKHQTLL--GVTGSGKTFTM 49
>gnl|CDD|238549 cd01129, PulE-GspE, PulE/GspE The type II secretory pathway is the
main terminal branch of the general secretory pathway
(GSP). It is responsible for the export the majority of
Gram-negative bacterial exoenzymes and toxins. PulE is a
cytoplasmic protein of the GSP, which contains an ATP
binding site and a tetracysteine motif. This subgroup
also includes PillB and HofB.
Length = 264
Score = 34.6 bits (80), Expect = 0.14
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 94 LVANLIHAKNGLLLTYGVTGSGKTYTM 120
+ L+ +G++L G TGSGKT T+
Sbjct: 71 IFRKLLEKPHGIILVTGPTGSGKTTTL 97
>gnl|CDD|238745 cd01468, trunk_domain, trunk domain. COPII-coated vesicles carry
proteins from the endoplasmic reticulum to the Golgi
complex. This vesicular transport can be reconstituted
by using three cytosolic components containing five
proteins: the small GTPase Sar1p, the Sec23p/24p
complex, and the Sec13p/Sec31p complex. This domain is
known as the trunk domain and has an alpha/beta vWA fold
and forms the dimer interface. Some members of this
family possess a partial MIDAS motif that is a
characteristic feature of most vWA domain proteins.
Length = 239
Score = 34.1 bits (79), Expect = 0.17
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 19/111 (17%)
Query: 215 VYSVFVSYIEIYN-------NSVHDLLEDMPEGNNARIQL--NNRLIR-------EDGDK 258
V+ + VSY I S+ L+ +P AR+ L + + K
Sbjct: 7 VFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPK 66
Query: 259 NMFVHGVNEIEVTTPDEAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIP 309
V + ++ + PD ++ + LE L P
Sbjct: 67 MYVVSDLKDVFLPLPDRFLV---PLSECKKVIHDLLEQLPPMFWPVPTHRP 114
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 34.4 bits (78), Expect = 0.22
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 15/116 (12%)
Query: 477 DSQLPDTSSLSSCSSGSAPPIPTPRTITSDYNTRTTRSGKAGDVQSTPN-----VTARRN 531
S LP+ +S +S ++ + P +P + N + + K D + + +
Sbjct: 479 SSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTT 538
Query: 532 APAPPRSTRRRSRSAGP------PTNPAGTWLHHTPGQVLLNTP----HGTVFQPT 577
A +PP T + P P N T + + VL + HGT PT
Sbjct: 539 ATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPT 594
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 34.0 bits (78), Expect = 0.31
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 469 IRKVKNLIDSQLPDTSSLSSCSSGSAPPIPTPRTITSDYNTRTTRSGKAGDVQSTPNVTA 528
R + S+ +SS SS S S +P +RS + ++
Sbjct: 312 PRASSSSSSSRESSSSSTSSSSESSRGAAVSP-------GPSPSRSPSPSRPPPPADPSS 364
Query: 529 RRNAPAPPRSTRRRSRSAGPPTNPAGTWL 557
R P P R+ + SAG PT
Sbjct: 365 PRKRPRPSRAPSSPAASAGRPTRRRARAA 393
Score = 33.6 bits (77), Expect = 0.50
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 481 PDTSSLSSCSSGSAPPIPTPRTITSDYNTRTTRSGKAGDVQSTPNVT-----------AR 529
P S S S + + +S + ++ + + + V+ +R
Sbjct: 296 PSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSR 355
Query: 530 RNAPAPPRSTRRRSRSAGPPTNPA 553
PA P S R+R R + P++PA
Sbjct: 356 PPPPADPSSPRKRPRPSRAPSSPA 379
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 34.1 bits (78), Expect = 0.35
Identities = 19/120 (15%), Positives = 32/120 (26%), Gaps = 25/120 (20%)
Query: 482 DTSSLSSCSSGSAPPIP---TPRTITSDYNTRTTRSGKAGDVQSTPNVTARRNAPAPPR- 537
D + +P P P + + P R+ PAP R
Sbjct: 2603 DDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPD-PHPPPTVPPPERPRDDPAPGRV 2661
Query: 538 STRRRSRSAGPPTNPAGTWLHHTPGQVLLNTPHGTVFQPTGWKKRKSVTALTDVKDIVDP 597
S RR+R G + P ++R + + + + DP
Sbjct: 2662 SRPRRARRLGRAAQASSP--------------------PQRPRRRAARPTVGSLTSLADP 2701
Score = 31.4 bits (71), Expect = 2.3
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 486 LSSCSSGSAPPI--PTPRTITSDYNTRTTRSGKAGDVQSTPNVTARRNAP-APPRSTRRR 542
L+S +G PP P D + R S P VT+R P APP+S R R
Sbjct: 2543 LASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPR---PSEPAVTSRARRPDAPPQSARPR 2599
Query: 543 SRSAGPPTNPAGT 555
+ +P G
Sbjct: 2600 A-PVDDRGDPRGP 2611
Score = 29.5 bits (66), Expect = 7.2
Identities = 18/77 (23%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 481 PDTSSLSSCSSGSAPPIPTPRTITS----DYNTRTTRSGKAGDVQSTPNVTARRNAPAPP 536
P + + PP PR + R R G+A S P RR A
Sbjct: 2633 PAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTV 2692
Query: 537 RSTRRRSRSAGPPTNPA 553
S + PP P
Sbjct: 2693 GSLTSLADPPPPPPTPE 2709
>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex
[DNA replication, recombination, and repair].
Length = 663
Score = 33.3 bits (77), Expect = 0.44
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 9/31 (29%)
Query: 94 LVANLIHAKNGL----LLTYGVTGSGKTYTM 120
LV + +NGL LL GVTGSGKT+TM
Sbjct: 24 LVEGI---ENGLKHQTLL--GVTGSGKTFTM 49
>gnl|CDD|233406 TIGR01420, pilT_fam, pilus retraction protein PilT. This model
represents the PilT subfamily of proteins related to
GspE, a protein involved in type II secretion (also
called the General Secretion Pathway). PilT is an
apparent cytosolic ATPase associated with type IV pilus
systems. It is not required for pilin biogenesis, but is
required for twitching motility and social gliding
behaviors, shown in some species, powered by pilus
retraction. Members of this family may be found in some
species that type IV pili but have related structures
for DNA uptake and natural transformation [Cell
envelope, Surface structures, Cellular processes,
Chemotaxis and motility].
Length = 343
Score = 33.1 bits (76), Expect = 0.46
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 93 PLVANLIHAKNGLLLTYGVTGSGKTYTM 120
P++ L GL+L G TGSGK+ T+
Sbjct: 112 PVLRELAERPRGLILVTGPTGSGKSTTL 139
>gnl|CDD|216584 pfam01580, FtsK_SpoIIIE, FtsK/SpoIIIE family. FtsK has extensive
sequence similarity to wide variety of proteins from
prokaryotes and plasmids, termed the FtsK/SpoIIIE
family. This domain contains a putative ATP binding
P-loop motif. It is found in the FtsK cell division
protein from E. coli and the stage III sporulation
protein E SpoIIIE, which has roles in regulation of
prespore specific gene expression in B. subtilis. A
mutation in FtsK causes a temperature sensitive block in
cell division and it is involved in peptidoglycan
synthesis or modification. The SpoIIIE protein is
implicated in intercellular chromosomal DNA transfer.
Length = 201
Score = 32.4 bits (74), Expect = 0.47
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 92 HPLVANLIHAKNGLLLTYGVTGSGKTYTMN-------GTNSDGGIMMRCID 135
+P+VA+L K LL G TGSGK+ +N +S + + ID
Sbjct: 29 NPVVADL--VKMPHLLIAGATGSGKSTFLNTLILSLAARHSPEEVRLYLID 77
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 33.0 bits (75), Expect = 0.67
Identities = 42/166 (25%), Positives = 58/166 (34%), Gaps = 37/166 (22%)
Query: 499 TPRTITSDYNTRTTRSGKAGDVQSTPNVTARRNAPAPPRSTRRRSRSAGPPTNPAGTWLH 558
TP +T + T D+ ++P +N PR S TN G
Sbjct: 258 TPTFLTREVET---------DLLTSPRSVVEKNTLTTPRRVESNSS-----TNHWGL--- 300
Query: 559 HTPGQVLLNTPHGTVFQPTGWKKRKSVTALTDVKDIVDPKLAKYSLMTQEPNTDGEMETH 618
G+ L TP GTV + T VT S+MT + + T
Sbjct: 301 --VGKNNLTTPQGTVLEHTPATSEGQVTI---------------SIMTGSSPAETKASTA 343
Query: 619 LFKV-NYLDGDVLPTVGGGAQVVFNELETLRQTSPLSSPVKHRIAA 663
+K+ N L P V A F LE T+P S+P R+ A
Sbjct: 344 AWKIRNPLSRTSAPAV-RIASATFRGLEKNPSTAP-STPATPRVRA 387
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 31.6 bits (72), Expect = 1.2
Identities = 36/218 (16%), Positives = 71/218 (32%), Gaps = 45/218 (20%)
Query: 103 NGLLLTYGVTGSGKTYTMNGTNSDG---GIMMRCIDV------LFNSIG----RYQPRKR 149
N +L G +GSGK+ + G + ID L ++G P
Sbjct: 1 NPNMLIVGPSGSGKSTLLKLLALRLLARGGRVIVIDPKGEYSGLARALGGEVIDLGPGS- 59
Query: 150 TFRPDKLNGFEVQ---------------SQVDI---LLQEQAEMNGELTKRTPG------ 185
LN ++ ++D+ LL+ A + +LT R
Sbjct: 60 ---GISLNPLDIFPTGEDAEELEADAHARKLDLLLALLELAALLGRDLTPREETALDRAL 116
Query: 186 -PGLKRNKSDPEMEPRIKD-ASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNA 243
+ D + P + D + D ++ + V E + LE + +G
Sbjct: 117 RALYEEEGIDRDAYPTLSDLLEALRDEPDELREAALVDDEEEAAEELALALERLLDGALG 176
Query: 244 RIQLNNR-LIREDGDKNMFVHGVNEIEVTTPDEAFQSI 280
+ + + D D + V ++ ++ D+A +
Sbjct: 177 GL-FDGPTTVDLDLDARLVVFDLSGLKGPELDKALMAA 213
>gnl|CDD|153284 cd07600, BAR_Gvp36, The Bin/Amphiphysin/Rvs (BAR) domain of
Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa
and similar proteins. BAR domains are dimerization,
lipid binding and curvature sensing modules found in
many different proteins with diverse functions including
organelle biogenesis, membrane trafficking or
remodeling, and cell division and migration. Proteomic
analysis shows that Golgi vesicle protein of 36 kDa
(Gvp36) may be involved in vesicular trafficking and
nutritional adaptation. A Saccharomyces cerevisiae
strain deficient in Gvp36 shows defects in growth, in
actin cytoskeleton polarization, in endocytosis, in
vacuolar biogenesis, and in the cell cycle. BAR domains
form dimers that bind to membranes, induce membrane
bending and curvature, and may also be involved in
protein-protein interactions.
Length = 242
Score = 31.6 bits (72), Expect = 1.2
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 26/102 (25%)
Query: 379 KFNEASKKMREILNNEKKMESLASAMPLIDSGVLYRLRKDVHVERLR--MMKERQEEKTK 436
+FN K+RE LN S A + RK V +RL+ + +
Sbjct: 133 EFN---AKLRETLN-----TSFQKAH---------KARKKVEDKRLQLDTARAELKSAEP 175
Query: 437 ATKSKLSQKFQSKMQAQAETYESKLRHNEKKVIRKVKNLIDS 478
A K Q + + ET E + ++ + +K ++D+
Sbjct: 176 AEK-------QEAARVEVETAEDEFVSATEEAVELMKEVLDN 210
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 31.2 bits (71), Expect = 1.8
Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 3/91 (3%)
Query: 476 IDSQLPDTSSLSSCSSGSAPPIPTPRTITSDYNTRTTRSGKAGDVQSTPNVTARRNAPAP 535
S + S P +S + S ++ S P A AP P
Sbjct: 189 SSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPA---APPP 245
Query: 536 PRSTRRRSRSAGPPTNPAGTWLHHTPGQVLL 566
P + S PT P+ + G + L
Sbjct: 246 PPVQQVPPLSTAKPTPPSASATPAPIGGITL 276
>gnl|CDD|236694 PRK10436, PRK10436, hypothetical protein; Provisional.
Length = 462
Score = 31.1 bits (71), Expect = 2.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 88 SEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120
+ + GL+L G TGSGKT T+
Sbjct: 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL 235
>gnl|CDD|227341 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 375
Score = 30.9 bits (70), Expect = 2.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 93 PLVANLIHAKNGLLLTYGVTGSGKTYTM 120
++ +L AK GL++ G TGSGK+ TM
Sbjct: 117 EVLKDLALAKRGLVIIVGATGSGKSTTM 144
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 30.8 bits (70), Expect = 2.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 428 KERQEEKTKATKSKLSQKFQSKMQAQAETYESKLR 462
R E K A + +L +F+ + + + YE KLR
Sbjct: 210 LARLESKEAALEKQLRLEFEREKEELRKKYEEKLR 244
Score = 30.0 bits (68), Expect = 5.3
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 378 RKFNEASKKMREILNN---EKKMESLASAMPLIDSGVLYRLRKDVHVERLRMMKERQEEK 434
+K E + E L EK+ E L+ + +L RL + + ++ E +
Sbjct: 177 KKLAELKAEEEEELERALKEKREELLSKL----EEELLARL-ESKEAALEKQLRLEFERE 231
Query: 435 TKATKSKLSQKFQSKMQAQAETYESKLR 462
+ + K +K + +++ QAE +E KL+
Sbjct: 232 KEELRKKYEEKLRQELERQAEAHEQKLK 259
Score = 29.2 bits (66), Expect = 7.5
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 415 LRKDVHVERLRMMKERQEEKTKATKSKLSQKFQSKMQAQAETYESKLRHNEKKVIRKVKN 474
L+ + E R +KE++EE + +L + +SK A + + EK+ +RK
Sbjct: 182 LKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFER-EKEELRKKYE 240
>gnl|CDD|227365 COG5032, TEL1, Phosphatidylinositol kinase and protein kinases of the
PI-3 kinase family [Signal transduction mechanisms / Cell
division and chromosome partitioning / Chromatin
structure and dynamics / DNA replication, recombination,
and repair / Intracellular trafficking and secretion].
Length = 2105
Score = 30.9 bits (70), Expect = 2.7
Identities = 23/160 (14%), Positives = 43/160 (26%), Gaps = 30/160 (18%)
Query: 356 SQEVQISKALPSRLDFGLTPGRRKFNEASKK-MREILNNEKKM-------------ESLA 401
S +I K P L F L + + + N + E++
Sbjct: 1570 SLLSKIGKEHPQALVFTLRSAIESTALSKESVALSLENKSRTHDPSLVKEALELSDENIR 1629
Query: 402 SAMPLIDSGVLYRL------RKDVHVERLRM-------MKERQEEKTKATKSKLSQKFQS 448
A PL+ L + + +ER+ + LS S
Sbjct: 1630 IAYPLLHLLFEPILAQLLSRLSSENNKISVALLIDKPLHEERENF---PSGLSLSSFQSS 1686
Query: 449 KMQAQAETYESKLRHNEKKVIRKVKNLIDSQLPDTSSLSS 488
++ + K+R K I + + S+
Sbjct: 1687 FLKELIKKSPRKIRKKFKIDISLLNLSRKLYISVLRSIRK 1726
>gnl|CDD|130916 TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine
synthase, clade II. This model represents a
single-molecule form of
phosphoribosylformylglycinamidine synthase, also called
FGAM synthase, an enzyme of purine de novo biosynthesis.
This model represents a second clade of these enzymes
found in Clostridia, Bifidobacteria and Streptococcus
species. This enzyme performs the fourth step in IMP
biosynthesis (the precursor of all purines) from PRPP
[Purines, pyrimidines, nucleosides, and nucleotides,
Purine ribonucleotide biosynthesis].
Length = 1239
Score = 31.0 bits (70), Expect = 2.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 432 EEKTKATKSKLSQKFQSKMQAQAETYESKLRHNEKKVIRK 471
EE A + KL + F SK + + ET E +EKKVI+
Sbjct: 932 EELESAWEGKLEEVFPSKFEDKKETVEVPAVASEKKVIKA 971
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 30.6 bits (69), Expect = 3.1
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 420 HVERLRMMKERQEEK--TKATKSKLSQKF--------QSKMQAQAETYESKLRHNEKKVI 469
H E + K R EK KA K +++QK + Q +A + R V
Sbjct: 326 HAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMA-RARARRAAVK 384
Query: 470 RKVKNLID-SQLPDTSSLSSCSSGSAP 495
K K LID S DT S + S GS P
Sbjct: 385 AKKKGLIDASPNEDTPSENEESKGSPP 411
>gnl|CDD|150420 pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated protein-1. This is
the N-terminal 200 residues of a set of proteins
conserved from yeasts to humans. Most of the proteins in
this entry have an RhoGEF pfam00621 domain at their
C-terminal end.
Length = 158
Score = 29.7 bits (67), Expect = 3.2
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 412 LYRLRKDVHVERLRMMKERQEEKTKATKSKLSQKFQSKMQAQAETYESKLRH---NEKKV 468
L LR+D ERL ER++E K + KL +F+ +++ + + + K+ N +++
Sbjct: 52 LELLREDN--ERLSTQYEREKELRKQAEQKL-LEFEDELEQEKKELQKKIEDLEENVRQL 108
Query: 469 IRKVKNLID 477
K KNL D
Sbjct: 109 ELKAKNLSD 117
>gnl|CDD|144876 pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E domain. These
proteins contain several 22 residue repeats which form a
pair of alpha helices. This family includes:
Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein
E.
Length = 191
Score = 29.9 bits (68), Expect = 3.5
Identities = 20/104 (19%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 377 RRKFNEASKKMREILNNE-----KKMESLASAMPLIDSGVLYRLRKDVHVERLR--MMKE 429
R++ ++++R+ LN + +K+ A + R R +VE LR +
Sbjct: 73 RQRLAPYAEELRKRLNRDAEELRRKLAPYAEEL---------RDRLRQNVEALRARLGPY 123
Query: 430 RQEEKTKATKSKLSQKFQSKMQAQAETYESKLRHNEKKVIRKVK 473
+E + K + +L ++ + + AE Y+++L +++ K++
Sbjct: 124 VEELRQKLAE-RL-EELKESVGPYAEEYKAQLSEQVEELREKLE 165
>gnl|CDD|168619 PRK06588, PRK06588, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 506
Score = 30.1 bits (68), Expect = 3.9
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 283 INNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKS 322
I+ MT+ C+ I+ +QL KI P R+ LTHLF S
Sbjct: 75 ISLEFMTIFACI-IIFCDQL----KIKPARQYFLTHLFSS 109
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 30.2 bits (68), Expect = 4.2
Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Query: 483 TSSLSSCSSGSAPPIPTPRTITSDYNTRTTRSGKAGDVQSTPNVTARRNAPA-PPRSTRR 541
T SLS + P+ R +S R K G+ +TP P +
Sbjct: 55 TDSLSGRPASRLNREPSSRPGSSHSEATIVRQAKEGERPATPPEARPDEGFVRPSLPSHP 114
Query: 542 RSRSAGPPTNPAGTWLHHTP 561
RSRSA + G P
Sbjct: 115 RSRSASVSNSKDGDRPSDLP 134
>gnl|CDD|218292 pfam04851, ResIII, Type III restriction enzyme, res subunit.
Length = 100
Score = 28.3 bits (64), Expect = 4.2
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 95 VANLIHAKNGLLLTYGVTGSGKTYTM 120
+ L+ K GL+ TGSGKT T
Sbjct: 12 IERLLEKKRGLI--VMATGSGKTLTA 35
>gnl|CDD|237620 PRK14136, recX, recombination regulator RecX; Provisional.
Length = 309
Score = 30.0 bits (67), Expect = 4.4
Identities = 13/45 (28%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 513 RSGKAGDVQS--TPNVTARRNAPAPPRSTRRRSRSAGPPTNPAGT 555
R + D Q P AR P R T R G P T
Sbjct: 3 RRRQGADPQEADHPARAARAGRPHASRETDRTVSGEGRPAGRTAT 47
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 30.2 bits (68), Expect = 4.4
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 477 DSQLPDTSSLSSCSSGSAPPIPTPRTITSDYNTRTTRSGKAGDVQSTPNVTARRNAPAPP 536
D+Q P S +S + APP + + A P +R +APA
Sbjct: 467 DAQPPADSGSASAPASDAPP-DAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAA 525
Query: 537 RSTRRRSRSAGP 548
+R P
Sbjct: 526 APPAPEARPPTP 537
>gnl|CDD|147443 pfam05247, FlhD, Flagellar transcriptional activator (FlhD). This
family consists of several bacterial flagellar
transcriptional activator (FlhD) proteins. FlhD combines
with FlhC to form a regulatory complex in E. coli, this
complex has been shown to be a global regulator involved
in many cellular processes as well as a flagellar
transcriptional activator.
Length = 102
Score = 28.4 bits (64), Expect = 4.4
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 232 DLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNE 267
+LL+++ + N + + L RLIRED + MF G++E
Sbjct: 5 ELLKEIRDINLSYLLLAQRLIREDKAEAMFRLGISE 40
>gnl|CDD|233063 TIGR00631, uvrb, excinuclease ABC, B subunit. All proteins in this
family for wich functions are known are DNA helicases
that function in the nucleotide excision repair and are
endonucleases that make the 3' incision next to DNA
damage. They are part of a pathway requiring UvrA, UvrB,
UvrC, and UvrD homologs. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 655
Score = 30.3 bits (69), Expect = 4.4
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 110 GVTGSGKTYTM 120
GVTGSGKT+TM
Sbjct: 36 GVTGSGKTFTM 46
>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1. Mating in
fungi is controlled by the loci that determine the
mating type of an individual, and only individuals with
differing mating types can mate. Basidiomycete fungi
have evolved a unique mating system, termed tetrapolar
or bifactorial incompatibility, in which mating type is
determined by two unlinked loci; compatibility at both
loci is required for mating to occur. The multi-allelic
tetrapolar mating system is considered to be a novel
innovation that could have only evolved once, and is
thus unique to the mushroom fungi. This domain is
C-terminal to the homeodomain transcription factor
region.
Length = 418
Score = 30.2 bits (68), Expect = 4.6
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 481 PDTSSLSSCSSGSAPPIPTPRTITSDYNTRTTRSGKAGDVQSTPNVTARRNAPAPPR-ST 539
P S+ S SA P+PTP T T SGK S PAP R T
Sbjct: 149 PAASTQDELSEASAAPLPTPSLSPPHTPTDTAPSGKRKRRLSDGFQL-----PAPKRPQT 203
Query: 540 RRRSRSAGPP 549
R ++ P
Sbjct: 204 SSRPQTVSDP 213
>gnl|CDD|220633 pfam10214, Rrn6, RNA polymerase I-specific transcription-initiation
factor. RNA polymerase I-specific
transcription-initiation factor Rrn6 and Rrn7 represent
components of a multisubunit transcription factor
essential for the initiation of rDNA transcription by
Pol I. These proteins are found in fungi.
Length = 753
Score = 30.1 bits (68), Expect = 5.3
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 9/108 (8%)
Query: 457 YESKLRHNEKKVIRKVKNLIDS-QLPDTSSLSSCSSGSAPPIPTPRTITSDYNTRTTRSG 515
E L N + +VKN++D D S S + P + + S T RS
Sbjct: 615 LEEFLDENTNSLSEEVKNILDHWDPGDDPSDVDDSQATQPDVTDSSQLESQSQIPTIRSS 674
Query: 516 KAGDVQSTPNVTARRNAPAPPRSTRRRSRSAGPPTNPAGTWLHHTPGQ 563
Q ++ P R ++S+ PPT+ + + P
Sbjct: 675 -----QQVSQTRKGGSSVVPSAPAPRLAQSSQPPTSQSSS---DLPPS 714
>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1
family).
Length = 619
Score = 29.8 bits (67), Expect = 5.7
Identities = 20/148 (13%), Positives = 35/148 (23%), Gaps = 18/148 (12%)
Query: 444 QKFQSKMQAQAETYES------------KLRHNEKKVIRKVKNLIDSQLPDTSSLSSCSS 491
+M +E KL + V+ +S +P T S
Sbjct: 420 VPLLERMAQIEAQWERHRQEKQRAKARKKLANKTSTVMEPPYGSTESSVPSTPSTRRNDR 479
Query: 492 GSAPPIP----TPRTITSDYNTR--TTRSGKAGDVQSTPNVTARRNAPAPPRSTRRRSRS 545
P TP S + + + P S +
Sbjct: 480 NITSNTPSLKRTPNLTKSSLSQEASLISKSTGNTHKHSTPRRLTTLPKLPAASRSSKGNL 539
Query: 546 AGPPTNPAGTWLHHTPGQVLLNTPHGTV 573
N + +PG + +P +V
Sbjct: 540 IRSGANGNASSDLSSPGSINSKSPEHSV 567
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 28.3 bits (63), Expect = 7.6
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 81 VGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120
VGQ++ + A + LLL YG G+GKT
Sbjct: 1 VGQEEAIEAL---REALELPPPKNLLL-YGPPGTGKTTLA 36
>gnl|CDD|225381 COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis,
outer membrane].
Length = 170
Score = 28.5 bits (64), Expect = 8.2
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 423 RLRMMKERQEEKTKATKSKLSQKFQSKMQAQAETYESKLRHNEKKVIRKVKNLIDS 478
++ + +R + + + K KL F K Q + + E+K++ K++ I+S
Sbjct: 79 KMEALSDRAKAEAEIKKEKLVNAFNKKQQEYEKDLNRREAEEEQKLLEKIQRAIES 134
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 29.2 bits (66), Expect = 8.5
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 422 ERLRMMKERQEEKTKATKSKLSQKFQSKMQAQAETYESKLRHNEKKVIRKVKNLIDSQLP 481
E R +K++ EK + + +L ++ + + + + SKL +KK+ K L +
Sbjct: 313 EEERELKKKFTEKIREKEKRL-EELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKSN 371
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 28.0 bits (63), Expect = 8.6
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 422 ERLRMMKERQEEKTKATKSKLSQKFQSKMQAQAETYESKLRHNEKKVIRKVKN 474
+ R ER+EE K + +L +K + ++Q ++ L+ NE K R K
Sbjct: 17 DAKREEFERREELLKQREEELEKK-EEELQESLIKFDKFLKENEAKRRRAEKK 68
>gnl|CDD|203820 pfam07956, DUF1690, Protein of Unknown function (DUF1690). Family
of uncharacterized fungal proteins.
Length = 142
Score = 28.2 bits (63), Expect = 8.9
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 382 EASKKMREILNNEKKMESLASAMPLIDSGVLYRLRKDVHVERLRMMKERQEEKTKATKSK 441
E KK + LN+ + + S +L E++ + E+ EE +K + +
Sbjct: 50 ETLKKFEDTLNSSLLSDDSKDNENGLSSNLLN--------EKIESLTEKLEEFSKLEEKE 101
Query: 442 LSQKFQSKMQAQAETYESKLRHNEK 466
S+K + A++E E L + K
Sbjct: 102 KSKKLKEVEDARSELTECLLENKGK 126
>gnl|CDD|235514 PRK05580, PRK05580, primosome assembly protein PriA; Validated.
Length = 679
Score = 29.4 bits (67), Expect = 9.2
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 95 VANLIHAKNG----LLLTYGVTGSGKT 117
I A G LL GVTGSGKT
Sbjct: 152 AVEAIRAAAGFSPFLL--DGVTGSGKT 176
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.130 0.371
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,549,672
Number of extensions: 3358948
Number of successful extensions: 2851
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2794
Number of HSP's successfully gapped: 140
Length of query: 690
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 586
Effective length of database: 6,324,786
Effective search space: 3706324596
Effective search space used: 3706324596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (27.5 bits)