RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2748
(690 letters)
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 122 bits (308), Expect = 1e-30
Identities = 84/378 (22%), Positives = 137/378 (36%), Gaps = 96/378 (25%)
Query: 26 QVFCRIRPM-----DNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVD 80
+V R+RP+ + + ++ +D + P F K+F+
Sbjct: 7 RVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFE-------LDKVFSPQ 59
Query: 81 VGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNS 140
Q+ V+ EV LV + I N + YG TG+GKTYTM GT + GI R + +LF+
Sbjct: 60 ASQQDVFQEVQ-ALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSE 118
Query: 141 IGRYQPRKRTFRPDKLNGFEVQ-SQVDI-------LLQEQAEMNGELTKRTPGPGLKRNK 192
+ Q + + + + S +I LL ++ + E+ R
Sbjct: 119 V---QEKASDWE------YTITVSAAEIYNEVLRDLLGKEPQEKLEI----------RLC 159
Query: 193 SDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI----QLN 248
D + + + E SV D+ + G+ R LN
Sbjct: 160 PDGSGQLYVPGLT------------------EFQVQSVDDINKVFEFGHTNRTTEFTNLN 201
Query: 249 NR-----------LIREDGDKNMFVHG------------VNEIEVT--TPDEAFQSIGNI 283
+ D + G V + EA +I
Sbjct: 202 EHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREA----QHI 257
Query: 284 NNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDY 343
N SL L + LR Q + PFR SKLT+L + +GD M+V V+P ++
Sbjct: 258 NKSLSALGDVIAALRSRQ----GHV-PFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNT 312
Query: 344 DENLAVMKFAEMSQEVQI 361
E L +KFAE + V++
Sbjct: 313 SETLYSLKFAERVRSVEL 330
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 119 bits (301), Expect = 1e-29
Identities = 69/370 (18%), Positives = 130/370 (35%), Gaps = 96/370 (25%)
Query: 26 QVFCRIRPM----DNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDV 81
+V+CR+RP+ + + + I V + TV+ D K Q+++ ++F+ +
Sbjct: 8 RVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDD--------KAKQHMYDRVFDGNA 59
Query: 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSI 141
Q V+ + LV + + N + YG TGSGKT+T+ G +S+ G+ R + LF +
Sbjct: 60 TQDDVFEDTK-YLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIM 118
Query: 142 GRYQPRKRTFRPDKLNGFEVQ-SQVDI-------LLQEQAEMNGELTKRTPGPGLKRNKS 193
+ F F ++ V++ LL + +L +
Sbjct: 119 ---KKDSNKFS------FSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKK---------- 159
Query: 194 DPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI----QLNN 249
D + +++ + + ++ +L + G+ R +N
Sbjct: 160 DSKGMVSVENVT------------------VVSISTYEELKTIIQRGSEQRHTTGTLMNE 201
Query: 250 R-----------LIREDGDKNMFVHG------------VNEIEVT--TPDEAFQSIGNIN 284
+ + + G V + EA +IN
Sbjct: 202 QSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEA----QSIN 257
Query: 285 NSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYD 344
SL L + L G I P+R KLT L G+ M V ++P + D
Sbjct: 258 KSLSALGDVISALS----SGNQHI-PYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLD 312
Query: 345 ENLAVMKFAE 354
E + +A
Sbjct: 313 ETHNSLTYAS 322
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 118 bits (299), Expect = 6e-29
Identities = 87/378 (23%), Positives = 143/378 (37%), Gaps = 91/378 (24%)
Query: 26 QVFCRIRPM---DNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVG 82
+VFCRIRP + + + ++TV+L D + + F ++F+
Sbjct: 62 RVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQ--IFSFDQVFHPLSS 119
Query: 83 QKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIG 142
Q ++ V+ PL+ + + N + YG TGSGKTYTM+G G++ R +D+LF+SI
Sbjct: 120 QSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 178
Query: 143 RYQPRKRTFRPDKLNGFEVQSQVDI-------LLQEQAEMNGELTKRTPGPGLKRNKSDP 195
Y+ + + + ++I LL +
Sbjct: 179 GYRNLGWEYE------IKA-TFLEIYNEVLYDLL---------------------SNEQK 210
Query: 196 EMEPRIKDASK----VEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI----QL 247
+ME R+ +K V +I E+ V + L M R
Sbjct: 211 DMEIRMAKNNKNDIYVSNITEETV------------LDPNHLRHLMHTAKMNRATASTAG 258
Query: 248 NNR-----------LIREDGDKNMFVHGV--------NEIEVT--TPDEAFQSIGNINNS 286
N R LI +K G +E T E NIN S
Sbjct: 259 NERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTSTRMTET----KNINRS 314
Query: 287 LMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDEN 346
L L + L + Q + I P+R SKLTHL G+ M + V+P + + E+
Sbjct: 315 LSELTNVILALLQKQ----DHI-PYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQES 369
Query: 347 LAVMKFAEMSQEVQISKA 364
+ ++FA +++KA
Sbjct: 370 VKSLRFAASVNSCKMTKA 387
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 116 bits (293), Expect = 1e-28
Identities = 78/380 (20%), Positives = 127/380 (33%), Gaps = 80/380 (21%)
Query: 26 QVFCRIRPM---DNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVG 82
+V+CRIRP + D S I+V + ++ F KIF+
Sbjct: 6 RVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDT 65
Query: 83 QKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIG 142
V+ EV LV + + N + YG TGSGKT+TM GI+ I +FN I
Sbjct: 66 NVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--DGIIPSTISHIFNWIN 122
Query: 143 RYQPRKRTFRPDKLNGFEVQSQVDI-------LLQEQAEMNGELTKRTPGPGLKRNKSDP 195
+ + + ++ ++I LL+ + +
Sbjct: 123 KLKTKGWDYK------VNC-EFIEIYNENIVDLLRSDNN--------------NKEDTSI 161
Query: 196 EMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI----QLNNR- 250
++ I+ + + NV S + S + + + N R N
Sbjct: 162 GLKHEIRHDQETKTTTITNVTSCKL-------ESEEMVEIILKKANKLRSTASTASNEHS 214
Query: 251 ----------LIREDGDKNMFVHG------------VNEIEVT--TPDEAFQSIGNINNS 286
L + +G +N +V E NIN S
Sbjct: 215 SASHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRET----QNINKS 270
Query: 287 LMTLRTCLEILRENQLQGTNKIP--PFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYD 344
L L + L Q + PFR SKLT+L + TGD M V ++P +
Sbjct: 271 LSCLGDVIHAL----GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHIN 326
Query: 345 ENLAVMKFAEMSQEVQISKA 364
E L ++FA ++
Sbjct: 327 ETLNSLRFASKVNSTRLVSR 346
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 116 bits (293), Expect = 3e-28
Identities = 78/380 (20%), Positives = 127/380 (33%), Gaps = 80/380 (21%)
Query: 26 QVFCRIRPM---DNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVG 82
+V+ RIRP + D S I+V + ++ F KIF+
Sbjct: 62 RVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDT 121
Query: 83 QKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIG 142
V+ EV LV + + N + YG TGSGKT+TM GI+ I +FN I
Sbjct: 122 NVDVFKEVG-QLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPG--DGIIPSTISHIFNWIN 178
Query: 143 RYQPRKRTFRPDKLNGFEVQSQVDI-------LLQEQAEMNGELTKRTPGPGLKRNKSDP 195
+ + + ++ ++I LL+ + +
Sbjct: 179 KLKTKGWDYK------VNA-EFIEIYNENIVDLLRSDNN--------------NKEDTSI 217
Query: 196 EMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI----QLNNR- 250
++ I+ + + NV SV + S + + + N R N
Sbjct: 218 GLKHEIRHDQETKTTTITNVTSVKL-------ESEEMVEIILKKANKLRSTASTASNEHS 270
Query: 251 ----------LIREDGDKNMFVHG------------VNEIEVT--TPDEAFQSIGNINNS 286
L + +G +N +V E NIN S
Sbjct: 271 SRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRET----QNINKS 326
Query: 287 LMTLRTCLEILRENQLQGTNKIP--PFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYD 344
L L + L Q + PFR SKLT+L + TGD M V ++P +
Sbjct: 327 LSALGDVIHAL----GQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHIN 382
Query: 345 ENLAVMKFAEMSQEVQISKA 364
E L ++FA ++
Sbjct: 383 ETLNSLRFASKVNSTRLVSR 402
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 112 bits (283), Expect = 3e-27
Identities = 67/369 (18%), Positives = 122/369 (33%), Gaps = 77/369 (20%)
Query: 26 QVFCRIRPM----DNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDV 81
+V+CR+RP I ++ + N + + F IF
Sbjct: 8 RVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSY--NFQFDMIFEPSH 65
Query: 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSI 141
K+++ E+ LV + + N + YG TGSGKTYTM G++ + +F
Sbjct: 66 TNKEIFEEIR-QLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAG--DGMIPMTLSHIFKWT 122
Query: 142 GRYQPRKRTFRPDKLNGFEVQ-------SQVDILLQEQAEMNGELTKRTPGPGLKRNKSD 194
+ R + E + + +D+L ++ N + + ++ +
Sbjct: 123 ANLKERGWNYE------MECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHD--H 174
Query: 195 PEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI----QLNNR 250
+ I + ++++ ++ S + + + + R + N R
Sbjct: 175 EKQGTYITNVTRMK-----------MT-------STSQVDTILKKASKMRSTAATRSNER 216
Query: 251 -----------LIREDGDKNMFVHG------------VNEIEVT--TPDEAFQSIGNINN 285
+ + G +N VT E NIN
Sbjct: 217 SSRSHSVFMVHINGRNLHTGETSQGKLNLVDLAGSERINSSAVTGERLRET----QNINK 272
Query: 286 SLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDE 345
SL L + L + PFR SKLT+L + GD M V + P E
Sbjct: 273 SLSCLGDVIYALN--TPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISE 330
Query: 346 NLAVMKFAE 354
L ++FA
Sbjct: 331 TLNSLRFAS 339
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 110 bits (278), Expect = 1e-26
Identities = 76/374 (20%), Positives = 137/374 (36%), Gaps = 92/374 (24%)
Query: 20 GSSDPLQVFCRIRPMD----NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKK 75
+ V R+RP++ + + + + +D V + F +
Sbjct: 1 AEEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSK----------SFNFDR 50
Query: 76 IFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCID 135
+F+ + K VY E+A P++ + I NG + YG T SGKTYTM G+ G++ R I
Sbjct: 51 VFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIH 110
Query: 136 VLFNSIGRYQPRKRTFRPDKLNGFEV-QSQV-DILLQEQAEMNGELTKRTPGPGLKRNKS 193
+F I ++ R+ R ++ E+ + D+L Q + +
Sbjct: 111 DIFQKIKKFPDREFLLR---VSYMEIYNETITDLLCGTQKMKPLII------------RE 155
Query: 194 DPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI----QLNN 249
D V D+ E+ V + L+ + +G +R ++N
Sbjct: 156 DVNRNV------YVADLTEEVV------------YTSEMALKWITKGEKSRHYGETKMNQ 197
Query: 250 ---------RLIREDGDKNMFVHGVNEIEV---------------------TTPDEAFQS 279
R+I E +K + ++V E
Sbjct: 198 RSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEG--- 254
Query: 280 IGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPR 339
NIN SL L ++ L + Q +R+SKLT + ++ G+ R+I + P
Sbjct: 255 -CNINRSLFILGQVIKKLSDGQ---VGGFINYRDSKLTRILQNSLGGNAKTRIICTITP- 309
Query: 340 VEDYDENLAVMKFA 353
+DE L ++FA
Sbjct: 310 -VSFDETLTALQFA 322
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 110 bits (276), Expect = 2e-26
Identities = 72/370 (19%), Positives = 125/370 (33%), Gaps = 89/370 (24%)
Query: 26 QVFCRIRPMD----NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDV 81
+V R RP+ D I+V ++ T+ + P + +++ K+F+ V
Sbjct: 3 KVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTV 62
Query: 82 GQKQVYSEVAHPLVANLIHA-KNGLLLTYGVTGSGKTYTMNGTNSDG-----GIMMRCID 135
VY PL+ +L YG TGSGKTYTM G+ G GI
Sbjct: 63 DNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAG 122
Query: 136 VLFNSIGRYQPRKRTFRPDKLNGFEVQ-SQVDILLQEQAEMNGE----LTKRTPGPGLKR 190
+F + Y + S +I G+ L KR
Sbjct: 123 DIFTFLNIYDKDNT---------KGIFISFYEIY-------CGKLYDLLQKRKM----VA 162
Query: 191 NKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQ---- 246
+ + E +KD + + +L+ M +G R
Sbjct: 163 ALENGKKEVVVKDLK------------------ILRVLTKEELILKMIDGVLLRKIGVNS 204
Query: 247 LNNR---------LIREDGDKNMFVHGVNEI--------------EVTTPDEAFQSIGNI 283
N+ + +D +KN + + I T + NI
Sbjct: 205 QNDESSRSHAILNIDLKDINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDG----ANI 260
Query: 284 NNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDY 343
N SL+ L+ C+ + PFR+S+LT + + F G MI ++P +
Sbjct: 261 NRSLLALKECI-----RAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCC 315
Query: 344 DENLAVMKFA 353
++ L ++++
Sbjct: 316 EQTLNTLRYS 325
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 104 bits (261), Expect = 3e-24
Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 17 QNNGSSDPLQVFCRIRPMD----NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYV 72
G ++V R+RP + D C+ + ++++ + + ++Y
Sbjct: 15 YFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRN------HQETLKYQ 68
Query: 73 FKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMR 132
F + Q+ +Y+ P++ +L+ +N +L YG TG+GKT+TM G+ G++ R
Sbjct: 69 FDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPR 128
Query: 133 CIDVLFNSIGRYQPRKRT 150
+ L R
Sbjct: 129 ALMDLLQLTREEGAEGRP 146
Score = 63.0 bits (154), Expect = 1e-10
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 205 SKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHG 264
+ SV +SY+EIY V DLL+ + + IRED N+ + G
Sbjct: 138 REEGAEGRPWALSVTMSYLEIYQEKVLDLLDP----ASGDLV-----IREDCRGNILIPG 188
Query: 265 VNEIEVTTPDEAFQ--SIGNIN 284
+++ +++ + + + N
Sbjct: 189 LSQKPISSFADFERHFLPASRN 210
Score = 44.2 bits (105), Expect = 9e-05
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
G IN SL L ++ L + G ++P +R+SKLT L + G +I + P
Sbjct: 274 GAINTSLFVLGKVVDALNQ----GLPRVP-YRDSKLTRLLQDSLGGSAHSILIANIAPER 328
Query: 341 EDYDENLAVMKFA 353
Y + ++ + FA
Sbjct: 329 RFYLDTVSALNFA 341
Score = 28.4 bits (64), Expect = 8.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 213 DNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI 245
D Y + +IY SV +L + EG NA +
Sbjct: 70 DAFYGERSTQQDIYAGSVQPILRHLLEGQNASV 102
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 102 bits (257), Expect = 7e-24
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 6/146 (4%)
Query: 1 MASAKTGKTPRKVAFSQNNGSSDPLQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSN 60
M S+ + +G+ + F R++P D+ E ++ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSGTRKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIR 60
Query: 61 PRYFNNKEVQYVFK--KIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTY 118
NN++ + FK + + D Q VY VA +V+ + NG ++ YG TG+GKTY
Sbjct: 61 RGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTY 119
Query: 119 TMNGTNSDG---GIMMRCIDVLFNSI 141
TM G + GI+ R + +F I
Sbjct: 120 TMMGATENYKHRGILPRALQQVFRMI 145
Score = 63.8 bits (156), Expect = 6e-11
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 17/106 (16%)
Query: 187 GLKRNKSDPEMEPRIKDASKVEDI------EEDNVYSVFVSYIEIYNNSVHDLLEDMPEG 240
G N + PR ++ + + +V VSY+EIYN S+ DLL +P
Sbjct: 123 GATENYKHRGILPRA-----LQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYV 177
Query: 241 NNARIQLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQ--SIGNIN 284
+ + I E+ + +F+ G++ + ++AF G N
Sbjct: 178 GPSVTPMT---IVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETN 219
Score = 46.5 bits (111), Expect = 2e-05
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
IN SL L + L + PFR+ KLTH K G+ ++ ++ +
Sbjct: 284 TYINKSLSFLEQAIIALGD----QKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEA 339
Query: 341 EDYDENLAVMKFA 353
+E L+ ++FA
Sbjct: 340 AQLEETLSSLRFA 352
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 100 bits (252), Expect = 4e-23
Identities = 78/388 (20%), Positives = 130/388 (33%), Gaps = 100/388 (25%)
Query: 26 QVFCRIRPM---DNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEV------------Q 70
+VFCR+RP+ + + + S PP + + +
Sbjct: 25 RVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHD 84
Query: 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG----TNSD 126
+ F ++F GQ +V+ E+A LV + + + YG TGSGKT+TM G
Sbjct: 85 FSFDRVFPPGSGQDEVFEEIA-MLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQL 143
Query: 127 GGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDI-------LLQEQAEMNGEL 179
G++ R + LF+ + T+ F S V+I LL
Sbjct: 144 EGLIPRALRHLFSVAQELSGQGWTYS------FVA-SYVEIYNETVRDLLATG------- 189
Query: 180 TKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPE 239
R E E R + E++ N V VS ++ +
Sbjct: 190 ---------TRKGQGGECEIR-RAGPGSEELTVTNARYVPVS-------CEKEVDALLHL 232
Query: 240 GNNARI----QLNNR-----------LIREDGDKNMFVHG------------VNEIEVTT 272
R N R + E + + ++
Sbjct: 233 ARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALG 292
Query: 273 P------DEAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTG 326
P E IN+SL TL + L + + P+R SKLT+L ++ G
Sbjct: 293 PGERERLRET----QAINSSLSTLGLVIMALSNKESH----V-PYRNSKLTYLLQNSLGG 343
Query: 327 DGDVRMIVCVNPRVEDYDENLAVMKFAE 354
+ M V ++P E+ E+L ++FA
Sbjct: 344 SAKMLMFVNISPLEENVSESLNSLRFAS 371
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 98.5 bits (246), Expect = 2e-22
Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 16/148 (10%)
Query: 18 NNGSSDPLQVFCRIRPMD----NSYDESCISVVSDTTVQLTPPD------------GSNP 61
++V R+RP + + + VV + P N
Sbjct: 5 EEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNV 64
Query: 62 RYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMN 121
NK++++VF +F+ Q +V+ P++ + ++ N +L YG TG+GKT+TM
Sbjct: 65 IKKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124
Query: 122 GTNSDGGIMMRCIDVLFNSIGRYQPRKR 149
G+ + G+M + L+ + + K
Sbjct: 125 GSADEPGVMYLTMLHLYKCMDEIKEEKI 152
Score = 63.8 bits (156), Expect = 5e-11
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 205 SKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHG 264
+++I+E+ + S VSY+E+YN + DLL G L +RED K + VHG
Sbjct: 142 KCMDEIKEEKICSTAVSYLEVYNEQIRDLLV--NSGP-----LA---VREDTQKGVVVHG 191
Query: 265 VNEIEVTTPDEAFQ--SIGNIN 284
+ + + +E GN N
Sbjct: 192 LTLHQPKSSEEILHLLDNGNKN 213
Score = 43.4 bits (103), Expect = 1e-04
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIP--PFRESKLTHLFKSYFTGDGDVRMIVCVNP 338
NIN SL+ L + L + K P+R SKLT L K G+ MI V+P
Sbjct: 279 TNINRSLLALGNVINALAD----SKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSP 334
Query: 339 RVEDYDENLAVMKFA 353
YD+ +K+A
Sbjct: 335 SSVFYDDTYNTLKYA 349
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 99.3 bits (248), Expect = 3e-22
Identities = 76/417 (18%), Positives = 133/417 (31%), Gaps = 115/417 (27%)
Query: 14 AFSQNNGSSDPLQVFCRIRPMD----NSYDESCISV--VSDTTVQLTPPDGSNPRYFNNK 67
+ + ++V R+R E + + ++ T L P + +
Sbjct: 29 SSFVSKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGAR 88
Query: 68 EVQYVFKKIFNVD-------------VGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGS 114
+ + +K F D Q+ VY + + + + + YG TGS
Sbjct: 89 SRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGS 148
Query: 115 GKTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQ-SQVDI------ 167
GK+YTM GT G++ R + LF I Q + V+ S ++
Sbjct: 149 GKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNIS------YNVKVSYFEVYNEHVR 202
Query: 168 -LLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIY 226
LL P L + + P P +KD ++V V
Sbjct: 203 DLLAPV-------VPNKPPYYL-KVRESPTEGPYVKDLTEVP-----------VR----- 238
Query: 227 NNSVHDLLEDMPEGNNAR-----------------IQLNNRLIREDGDKNMFVHGVNEI- 268
+ +++ M G+ +R + + I D + + + I
Sbjct: 239 --GLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIR 296
Query: 269 ---------------EVTTPDEAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIP---- 309
E NIN SL TL + L + + +
Sbjct: 297 LVDLAGSERAKSTEATGQRLREG----SNINKSLTTLGRVIAALADPKSSASRPSSPVKS 352
Query: 310 -------------PFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFA 353
P+R+S LT L K G+ MI C++P DYDE L+ +++A
Sbjct: 353 GRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYA 407
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 96.9 bits (242), Expect = 7e-22
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 21 SSDPLQVFCRIRPMDNS-YDESCISVVS----DTTVQLTPP-DGSNPRYFNNKEVQYVFK 74
SSD ++V R RP++ E+ ++++ V + PP + + F
Sbjct: 2 SSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFD 61
Query: 75 KIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCI 134
+++ ++ PL+ ++ N + YG TG+GKT+TM G + G +
Sbjct: 62 AVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSF 121
Query: 135 DVLFNSI 141
LF++I
Sbjct: 122 KHLFDAI 128
Score = 61.5 bits (150), Expect = 2e-10
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 191 NKSDPEMEPRIKDA--SKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLN 248
NK +P P + + + V SY+E+YN + DL+++ N
Sbjct: 110 NKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKN-----------N 158
Query: 249 NRL-IREDGDKNMFVHGVNEIEVTTPDEAFQ--SIGNIN 284
+L ++ED + ++V G++ VTT E G N
Sbjct: 159 TKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFAN 197
Score = 42.6 bits (101), Expect = 3e-04
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
IN SL L + L E G IP +R+SKLT L + G+ M ++P
Sbjct: 262 AKINLSLSALGLVISKLVE----GATHIP-YRDSKLTRLLQDSLGGNSKTLMCANISPAS 316
Query: 341 EDYDENLAVMKFA 353
+YDE ++ +++A
Sbjct: 317 TNYDETMSTLRYA 329
Score = 28.7 bits (65), Expect = 5.9
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 213 DNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI 245
D VY I+ S L++ + EG N+ I
Sbjct: 61 DAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTI 93
>3vhx_B Kinesin-like protein KIF23; small GTPase, GTP binding, flemming
BODY, cytokinesis, cell signaling protein complex; HET:
GTP; 2.81A {Homo sapiens}
Length = 120
Score = 90.6 bits (224), Expect = 7e-22
Identities = 47/127 (37%), Positives = 58/127 (45%), Gaps = 18/127 (14%)
Query: 529 RRNAPAPPRSTRRRSRSAGPPTNPAGTWLHHTPGQVLLNTPHGTVFQPTGWKKRKSVTAL 588
P R RRSRSAG W+ H P N TV QP +V+
Sbjct: 7 PDQNAPPIRLRHRRSRSAGD------RWVDHKPAS---NMQTETVMQPH-VPHAITVSV- 55
Query: 589 TDVKDIVDPKLAKYSLMTQEPNTDGEMETHLFKVNYLDGDVLPTVGGGAQVVFNELETLR 648
+ K + K KY L QE +DGE+ET L K GD+ T GGG V F ++ETL+
Sbjct: 56 ANEKAL--AKCEKYMLTHQELASDGEIETKLIK-----GDIYKTRGGGQSVQFTDIETLK 108
Query: 649 QTSPLSS 655
Q SP S
Sbjct: 109 QESPNGS 115
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 94.6 bits (236), Expect = 6e-21
Identities = 33/146 (22%), Positives = 49/146 (33%), Gaps = 10/146 (6%)
Query: 16 SQNNGSSDPLQVFCRIRPMD----NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQY 71
+ + V R RP++ + IS+ S + + P + +
Sbjct: 44 MTDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAF 103
Query: 72 VFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG---- 127
F F+ + VY A PLV + YG TGSGKT+TM G S
Sbjct: 104 CFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNA 163
Query: 128 --GIMMRCIDVLFNSIGRYQPRKRTF 151
GI +F + RK
Sbjct: 164 SKGIYAMASRDVFLLKNQPCYRKLGL 189
Score = 62.3 bits (152), Expect = 2e-10
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 208 EDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNE 267
+ V+V++ EIYN + DLL N + +L + EDG + + V G+ E
Sbjct: 181 QPCYRKLGLEVYVTFFEIYNGKLFDLL-------NKKAKLR---VLEDGKQQVQVVGLQE 230
Query: 268 IEVTTPDEAFQSI--GNIN 284
V + D+ + I G+
Sbjct: 231 HLVNSADDVIKMIDMGSAC 249
Score = 46.5 bits (111), Expect = 2e-05
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVR--MIVCVNP 338
IN SL+ L+ C+ L +N+ PFRESKLT + + F G + R MI ++P
Sbjct: 308 AEINKSLLALKECIRALGQNK-----AHTPFRESKLTQVLRDSFIG-ENSRTCMIATISP 361
Query: 339 RVEDYDENLAVMKFA 353
+ + L +++A
Sbjct: 362 GISSCEYTLNTLRYA 376
Score = 28.4 bits (64), Expect = 8.5
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 213 DNVYSVFVSYIEIYNNSVHDLLEDMPEGNNA 243
D + S +Y + L++ + EG A
Sbjct: 106 DFAFDETASNEVVYRFTARPLVQTIFEGGKA 136
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 93.4 bits (233), Expect = 6e-21
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 19 NGSSDPLQVFCRIRPMD----NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFK 74
+ + ++V CR RP++ N D+ + TV + Y F
Sbjct: 3 DLAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASK-------------PYAFD 49
Query: 75 KIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG---GIMM 131
++F Q+QVY++ A +V +++ NG + YG T SGKT+TM G D GI+
Sbjct: 50 RVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIP 109
Query: 132 RCIDVLFNSI 141
R + +FN I
Sbjct: 110 RIVQDIFNYI 119
Score = 66.8 bits (164), Expect = 5e-12
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 191 NKSDPEME---PRIKDA--SKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI 245
DPE PRI + + ++E+ + + VSY EIY + + DLL+ + +
Sbjct: 98 KLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDV----SKTNL 153
Query: 246 QLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQSI--GNIN 284
+ ED ++ +V G E V +PDE +I G N
Sbjct: 154 S-----VHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSN 189
Score = 46.8 bits (112), Expect = 1e-05
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
NIN SL L + L E G+ +P +R+SK+T + + G+ +++C +P
Sbjct: 252 KNINKSLSALGNVISALAE----GSTYVP-YRDSKMTRILQDSLGGNCRTTIVICCSPSS 306
Query: 341 EDYDENLAVMKFA 353
+ E + + F
Sbjct: 307 YNESETKSTLLFG 319
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 93.4 bits (233), Expect = 7e-21
Identities = 32/135 (23%), Positives = 48/135 (35%), Gaps = 15/135 (11%)
Query: 16 SQNNGSSDPLQVFCRIRPMDNS-YDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFK 74
P++V R+RP+ S + + R ++ + F
Sbjct: 4 GLPGAEEAPVRVALRVRPLLPKELLHGHQSCLQ--------VEPGLGRVTLGRDRHFGFH 55
Query: 75 KIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG------G 128
+ D GQ+ VY PL+ N + YG TGSGKTYTM + G
Sbjct: 56 VVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQG 115
Query: 129 IMMRCIDVLFNSIGR 143
I+ R + F I
Sbjct: 116 IVPRAMAEAFKLIDE 130
Score = 66.0 bits (162), Expect = 8e-12
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 212 EDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVT 271
+ V VSY+E+Y DLLE + IQ +RED N+ + GV E++V
Sbjct: 132 DLLDCLVHVSYLEVYKEEFRDLLE--VGTASRDIQ-----LREDERGNVVLCGVKEVDVE 184
Query: 272 TPDEAFQSI--GNIN 284
DE + GN
Sbjct: 185 GLDEVLSLLEMGNAA 199
Score = 41.0 bits (97), Expect = 0.001
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIP--PFRESKLTHLFKSYFTGD---GDVR--MI 333
IN+SL+ L + L + + P+R+SK+T + K D G+ + MI
Sbjct: 270 IQINSSLLALGNVISALGD----PQRRGSHIPYRDSKITRILK-----DSLGGNAKTVMI 320
Query: 334 VCVNPRVEDYDENLAVMKFA 353
CV+P D+DE L + +A
Sbjct: 321 ACVSPSSSDFDETLNTLNYA 340
Score = 28.7 bits (65), Expect = 7.2
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 213 DNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI 245
V + +Y V LLE EG NA +
Sbjct: 55 HVVLAEDAGQEAVYQACVQPLLEAFFEGFNATV 87
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 93.4 bits (233), Expect = 1e-20
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 17/133 (12%)
Query: 16 SQNNGSSDPLQVFCRIRPMD----NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQY 71
+ + D ++V CR RP++ + + + ++ G Y
Sbjct: 4 EREIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGK----------VY 53
Query: 72 VFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG---G 128
+F K+F + Q++VY+E A +V +++ NG + YG T SGKT+TM G D G
Sbjct: 54 LFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQG 113
Query: 129 IMMRCIDVLFNSI 141
I+ R ++ +FN I
Sbjct: 114 IIPRIVNDIFNHI 126
Score = 65.3 bits (160), Expect = 2e-11
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 199 PRIKDA--SKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDG 256
PRI + + + +E + + + VSY EIY + + DLL+ + + + ED
Sbjct: 116 PRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDV----SKVNLS-----VHEDK 166
Query: 257 DKNMFVHGVNEIEVTTPDEAFQSI--GNIN 284
++ +V G E V++P++ F+ I G N
Sbjct: 167 NRVPYVKGATERFVSSPEDVFEVIEEGKSN 196
Score = 43.4 bits (103), Expect = 2e-04
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
NIN SL L + L + G P+R+SKLT + + G+ +++C +P
Sbjct: 259 KNINKSLSALGNVISALAD----GNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPAS 314
Query: 341 EDYDENLAVMKFA 353
+ E + + F
Sbjct: 315 FNESETKSTLDFG 327
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 93.0 bits (232), Expect = 1e-20
Identities = 33/142 (23%), Positives = 53/142 (37%), Gaps = 22/142 (15%)
Query: 17 QNNGSSDPLQVFCRIRPM------DNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQ 70
+ +QV R RP ++ S + +++ G + K
Sbjct: 2 KKEEKGKNIQVVVRCRPFNLAERKASA--HSIVECDPVRK-EVSVRTGGLADKSSRK--T 56
Query: 71 YVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG--- 127
Y F +F Q VY V P++ +I N + YG TG+GKT+TM G S
Sbjct: 57 YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEY 116
Query: 128 --------GIMMRCIDVLFNSI 141
GI+ R + +F +
Sbjct: 117 TWEEDPLAGIIPRTLHQIFEKL 138
Score = 59.5 bits (145), Expect = 1e-09
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 208 EDIEEDNV-YSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIRED--GDKNMFVHG 264
E + ++ +SV VS +EIYN + DLL ++ +L + +D + + + G
Sbjct: 136 EKLTDNGTEFSVKVSLLEIYNEELFDLLNP---SSDVSERLQ---MFDDPRNKRGVIIKG 189
Query: 265 VNEIEVTTPDEAFQ--SIGNIN 284
+ EI V DE +Q G
Sbjct: 190 LEEITVHNKDEVYQILEKGAAK 211
Score = 37.2 bits (87), Expect = 0.016
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 15/78 (19%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGD---GDVR--MIVC 335
GNIN SL+TL + L E +P +RESKLT + + D G R +I
Sbjct: 277 GNINQSLLTLGRVITALVERTPH----VP-YRESKLTRILQ-----DSLGGRTRTSIIAT 326
Query: 336 VNPRVEDYDENLAVMKFA 353
++P + +E L+ +++A
Sbjct: 327 ISPASLNLEETLSTLEYA 344
Score = 29.9 bits (68), Expect = 2.9
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 213 DNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI 245
D V+ I++Y + V +L+++ G N I
Sbjct: 60 DMVFGASTKQIDVYRSVVCPILDEVIMGYNCTI 92
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 93.5 bits (233), Expect = 2e-20
Identities = 33/141 (23%), Positives = 48/141 (34%), Gaps = 10/141 (7%)
Query: 21 SSDPLQVFCRIRPMD----NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKI 76
+ V R RP++ + ISV S + + P + + F
Sbjct: 69 EEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFA 128
Query: 77 FNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG------GIM 130
F+ + VY A PLV + YG TGSGKT+TM G S GI
Sbjct: 129 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIY 188
Query: 131 MRCIDVLFNSIGRYQPRKRTF 151
+F + + R
Sbjct: 189 AMASRDVFLLKNQPRYRNLNL 209
Score = 61.1 bits (149), Expect = 4e-10
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 208 EDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNE 267
+ + V+V++ EIYN V DLL N + +L + ED + + V G+ E
Sbjct: 201 QPRYRNLNLEVYVTFFEIYNGKVFDLL-------NKKAKLR---VLEDSRQQVQVVGLQE 250
Query: 268 IEVTTPDEAFQSI--GNIN 284
VT D+ + I G+
Sbjct: 251 YLVTCADDVIKMINMGSAC 269
Score = 45.7 bits (109), Expect = 4e-05
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVR--MIVCVNP 338
IN SL+ L+ C+ L +N+ PFRESKLT + + F G + R MI ++P
Sbjct: 328 AEINKSLLALKECIRALGQNK-----AHTPFRESKLTQVLRDSFIG-ENSRTCMIAMISP 381
Query: 339 RVEDYDENLAVMKFA 353
+ + L +++A
Sbjct: 382 GISSCEYTLNTLRYA 396
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 91.9 bits (229), Expect = 3e-20
Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 17/129 (13%)
Query: 21 SSDPLQVFCRIRPMD----NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKI 76
S++ ++V R RP + S + ++ T + + + F ++
Sbjct: 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQG---------SFTFDRV 54
Query: 77 FNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG----GIMMR 132
F++ Q ++ P V ++++ NG + YG TG+GK+YTM GT+ D G++ R
Sbjct: 55 FDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPR 114
Query: 133 CIDVLFNSI 141
++ +F SI
Sbjct: 115 IVEQIFTSI 123
Score = 63.0 bits (154), Expect = 9e-11
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 191 NKSDPEME---PRIKDA--SKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI 245
+ DP+ PRI + + + + Y+V VSY+EIY + DLL N +
Sbjct: 102 SIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAP----QNDNL 157
Query: 246 QLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQ--SIGNIN 284
+ E+ ++ ++V G+ EI V++ E ++ G
Sbjct: 158 P-----VHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNA 193
Score = 41.4 bits (98), Expect = 7e-04
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
IN SL L + L + G + P+R+SKLT + + G+ +I+ +P
Sbjct: 256 KKINKSLSALGMVINALTD----GKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSS 311
Query: 341 EDYDENLAVMKFA 353
+ E L+ ++F
Sbjct: 312 YNDAETLSTLRFG 324
Score = 28.7 bits (65), Expect = 6.3
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 213 DNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI 245
D V+ + +I++ S+ ++D+ G N +
Sbjct: 52 DRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTV 84
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 91.1 bits (227), Expect = 6e-20
Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 29/159 (18%)
Query: 1 MASAKTGKTPRKVAFSQNNGSSDPLQVFCRIRPM------DNSYDESCISVVSD-TTVQL 53
MAS S+ +QV+ R+RP+ S + VV V
Sbjct: 3 MASMDISGGNTS--RQPQKKSNQNIQVYVRVRPLNSRERCIRS--AEVVDVVGPREVVTR 58
Query: 54 TPPDGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTG 113
D + F F + F + Q VYS V PL+ +++ N + YG TG
Sbjct: 59 HTLDSKLTKKFT-------FDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTG 111
Query: 114 SGKTYTMNGTNSDG-----------GIMMRCIDVLFNSI 141
+GKT+TM G + GI+ R + LF+ +
Sbjct: 112 TGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDEL 150
Score = 57.2 bits (139), Expect = 8e-09
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 208 EDIEEDNV-YSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVN 266
+++ V Y++ +SY+E+YN + DLL + RI ++ + G+
Sbjct: 148 DELRMMEVEYTMRISYLELYNEELCDLL-STDDTTKIRIF-----DDSTKKGSVIIQGLE 201
Query: 267 EIEVTTPDEAFQ--SIGNIN 284
EI V + D+ ++ G
Sbjct: 202 EIPVHSKDDVYKLLEKGKER 221
Score = 37.2 bits (87), Expect = 0.016
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
NIN SL+TL + L + +P +RESKLT L + G +I ++P
Sbjct: 288 VNINQSLLTLGRVITALVD----RAPHVP-YRESKLTRLLQESLGGRTKTSIIATISPGH 342
Query: 341 EDYDENLAVMKFA 353
+D +E L+ +++A
Sbjct: 343 KDIEETLSTLEYA 355
Score = 29.1 bits (66), Expect = 4.8
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 213 DNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI 245
D + ++Y+ V L+E++ G N +
Sbjct: 72 DRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTV 104
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 90.4 bits (225), Expect = 8e-20
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 13/136 (9%)
Query: 16 SQNNGSSDPLQVFCRIRPMDNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKK 75
+++ R P SVV P S+ + + ++ F
Sbjct: 15 GMEGAKLSAVRIAVREAPYRQFLGRREPSVVQF-------PPWSDGKSLIVDQNEFHFDH 67
Query: 76 IFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG------GI 129
F + Q ++Y + PLV L+ L YG TG+GK+Y+M T GI
Sbjct: 68 AFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGI 127
Query: 130 MMRCIDVLFNSIGRYQ 145
+ R + +F + Q
Sbjct: 128 LPRALGDIFERVTARQ 143
Score = 48.0 bits (115), Expect = 6e-06
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 21/92 (22%)
Query: 199 PRIKDA--SKVEDIEEDNV--YSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIRE 254
PR +V +E+N V+ S+IEIYN DLL
Sbjct: 129 PRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGST---------------PH 173
Query: 255 DGDKNMFVHGVNEIEVTTPDEAFQ--SIGNIN 284
+ + + + +G N
Sbjct: 174 MPMVAARCQRCTCLPLHSQADLHHILELGTRN 205
Score = 29.1 bits (66), Expect = 4.9
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 213 DNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI 245
D+ + +S E+Y + L++ + EG
Sbjct: 66 DHAFPATISQDEMYQALILPLVDKLLEGFQCTA 98
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 90.3 bits (225), Expect = 9e-20
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 12/139 (8%)
Query: 26 QVFCRIRPMD----NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIF---- 77
+V RIRPM+ + + + + V ++ + + + + + F
Sbjct: 4 KVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMD 63
Query: 78 ----NVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRC 133
GQ V+ + ++ N N + YG TGSGK+YTM GT G++ R
Sbjct: 64 ESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRL 123
Query: 134 IDVLFNSIGRYQPRKRTFR 152
LF + + +++F+
Sbjct: 124 CSGLFERTQKEENEEQSFK 142
Score = 61.0 bits (149), Expect = 4e-10
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 199 PRIKDA--SKVEDIEEDNV-YSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIRED 255
PR+ + + E + + V VSY+EIYN V DLL+ P+G+ ++ +RE
Sbjct: 121 PRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD--PKGSRQTLK-----VREH 173
Query: 256 GDKNMFVHGVNEIEVTTPDEAFQ--SIGNIN 284
+V G++++ VT+ + S GN +
Sbjct: 174 SVLGPYVDGLSKLAVTSYKDIESLMSEGNKS 204
Score = 44.9 bits (107), Expect = 6e-05
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 281 GNINNSLMTLRTCLEILREN-QLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPR 339
NIN SL TL + L + + NK P+R+S LT L K G+ M+ V+P
Sbjct: 271 SNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPA 330
Query: 340 VEDYDENLAVMKFA 353
++YDE L+ +++A
Sbjct: 331 ADNYDETLSTLRYA 344
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 89.6 bits (223), Expect = 3e-19
Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 8 KTPRKVAFSQNNGSSDPLQVFCRIRPMDNS-YDESCISVVS----DTTVQLTPPDGSNPR 62
GSS+ ++V R RPM+ S VV V + P G+
Sbjct: 6 HHSSGRENLYFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHE 65
Query: 63 YFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG 122
K + F +++ + Q ++Y E PLV +++ NG + YG TG+GKTYTM G
Sbjct: 66 --MPK--TFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEG 121
Query: 123 TNSDG---GIMMRCIDVLFNSIGR 143
D G++ D +F I R
Sbjct: 122 IRGDPEKRGVIPNSFDHIFTHISR 145
Score = 60.7 bits (148), Expect = 6e-10
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 24/105 (22%)
Query: 191 NKSDPEME---PRIKDASKVEDI------EEDNVYSVFVSYIEIYNNSVHDLLEDMPEGN 241
+ DPE P + I ++ Y V SY+EIY + DLL
Sbjct: 122 IRGDPEKRGVIPNS-----FDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSK---DQ 173
Query: 242 NARIQLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQ--SIGNIN 284
R++ ++E D ++V ++ + E ++GN N
Sbjct: 174 TKRLE-----LKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQN 213
Score = 29.5 bits (67), Expect = 3.9
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 213 DNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARI 245
D VY E+Y+ + L++ + +G N I
Sbjct: 73 DAVYDWNAKQFELYDETFRPLVDSVLQGFNGTI 105
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 87.6 bits (218), Expect = 9e-19
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 20/146 (13%)
Query: 21 SSDPLQVFCRIRPMD----NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKI 76
+ ++V R+RP + + + I + TT + P + F
Sbjct: 2 AGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPK------SFSFDYS 55
Query: 77 FNVDV--------GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDG- 127
+ QKQVY ++ ++ + N + YG TG+GK+YTM G
Sbjct: 56 YWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQ 115
Query: 128 -GIMMRCIDVLFNSIGRYQPRKRTFR 152
GI+ + + LF+ I ++
Sbjct: 116 QGIIPQLCEDLFSRINDTTNDNMSYS 141
Score = 59.5 bits (145), Expect = 1e-09
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 199 PRIKDA--SKVEDIEEDNV-YSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIRED 255
P++ + S++ D DN+ YSV VSY+EIY V DLL +GN +RE
Sbjct: 120 PQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLR--------VREH 171
Query: 256 GDKNMFVHGVNEIEVTTPDEAFQ--SIGNIN 284
+V ++++ VT+ ++ GN
Sbjct: 172 PLLGPYVEDLSKLAVTSYNDIQDLMDSGNKP 202
Score = 40.6 bits (96), Expect = 0.001
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIP-------PFRESKLTHLFKSYFTGDGDVRMI 333
NIN SL TL + L E P+R+S LT L + G+ M+
Sbjct: 269 ANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMV 328
Query: 334 VCVNPRVEDYDENLAVMKFA 353
++P +YDE L+ +++A
Sbjct: 329 AALSPADINYDETLSTLRYA 348
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.4 bits (174), Expect = 7e-13
Identities = 91/486 (18%), Positives = 161/486 (33%), Gaps = 104/486 (21%)
Query: 56 PDGSNPRYFNNKEVQY----VFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGV 111
P Y ++ Y VF K V + Q Y ++ L+ L AKN +L GV
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYN---VSRLQPYLKLRQALL-ELRPAKN--VLIDGV 158
Query: 112 TGSGKT--------------------Y--TMNGTNSDGGIMMRCIDVLFNSIGRYQPRKR 149
GSGKT + + NS ++ +L+ + R
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 150 TFRPDKLNGFEVQSQVDILLQEQAEMNGEL------TKRTPGPGLK------------RN 191
KL +Q+++ LL+ + N L + R
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA----WNAFNLSCKILLTTRF 274
Query: 192 KS--DPEMEPRIKDASKVED---IEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQ 246
K D S + D V S+ + Y++ DL ++ N R+
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC---RPQDLPREVLTTNPRRLS 331
Query: 247 LNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQSIGNINNSLMTLRTC---LEILRENQLQ 303
+ IR+ VN ++TT E+ S+ + + R L + +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLEPAEY--RKMFDRLSVFPPSA-- 385
Query: 304 GTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQISK 363
IP L L DV ++V + + +L + +E IS
Sbjct: 386 ---HIPT----ILLSLIWFDVIKS-DVMVVVN-----KLHKYSLV----EKQPKESTIS- 427
Query: 364 ALPSRLDFGLTPGRRKFNEASKKMREILNNEKKMESLASAMPLID----SGVLYRLRKDV 419
+PS + L + + + N K +S P +D S + + L+
Sbjct: 428 -IPS-IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 420 HVERLRMMKE-----R-QEEKTKATKSKL--SQKFQSKMQAQAETYESKLRHNEKKVIRK 471
H ER+ + + R E+K + + S + +Q Q + Y+ + N+ K R
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ-QLKFYKPYICDNDPKYERL 544
Query: 472 VKNLID 477
V ++D
Sbjct: 545 VNAILD 550
Score = 67.6 bits (164), Expect = 1e-11
Identities = 78/528 (14%), Positives = 147/528 (27%), Gaps = 164/528 (31%)
Query: 64 FNNKEVQYVFKKIFNV------------DVGQ--KQVYS--EVAHPLVANLIHAKNG--- 104
F E QY +K I +V DV K + S E+ H + A +G
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH--IIMSKDAVSGTLR 66
Query: 105 ---LLLTYG--------VTGSGKTYT---------MNGTNSDGGIMMRCIDVLFNSIGRY 144
LL+ Y + + + D L+N +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 145 QPRKRTFRPDKLNG-----FEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEP 199
+ R E++ ++L+ + G G K+
Sbjct: 127 AKYNVS-RLQPYLKLRQALLELRPAKNVLID---GV--------LGSG----KT-----W 165
Query: 200 RIKDASKVEDIEEDNVYSVFVSYIEIYN-NSVHDLLEDMPEGNNARIQLN-NRLIREDGD 257
D ++ + +F ++ + N NS +LE + Q++ N R D
Sbjct: 166 VALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEML---QKLLYQIDPNWTSRSDHS 220
Query: 258 KNMFVHGVNEIEVTTPDEAFQSIGNINNSLMTLR-------------TCLEIL---RE-- 299
N+ + ++ I+ N L+ L +C +IL R
Sbjct: 221 SNIKLR-IHSIQ--AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-KILLTTRFKQ 276
Query: 300 --NQLQGTNKI--------PPFRESKLTHLFKSYF-TGDGDVRMIVC-VNPRVEDYDENL 347
+ L ++ L Y D+ V NP
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP--------R 328
Query: 348 AVMKFAEMSQEVQISKALPSRLDFGLTPGRRKFNEASKKMREILN-NE-KKM-ESLASAM 404
+ AE ++ + D K + +L E +KM + L+
Sbjct: 329 RLSIIAESIRD------GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--- 379
Query: 405 PLIDSGVLYRLRKDVHV--ERLRM----MKERQEEK--TKATKSKLSQKFQSKMQAQAET 456
+ H+ L + + + K K L +K Q + T
Sbjct: 380 --V-------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-----QPKEST 425
Query: 457 Y-------ESKLRHNEKKVIRKVKNLIDS-QLPDTSSLSSCSSGSAPP 496
E K++ + + ++++D +P + S PP
Sbjct: 426 ISIPSIYLELKVKLENEYALH--RSIVDHYNIPK----TFDSDDLIPP 467
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 4e-09
Identities = 83/522 (15%), Positives = 141/522 (27%), Gaps = 173/522 (33%)
Query: 204 ASKVEDIEE---DNVYSVFVSYIE---IYNNSVHDLLEDMPEGNNARIQLNNRLIREDGD 257
+S VE + D V ++ ++ E + N +H L + + N+ + LI+
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK---- 124
Query: 258 KNMF--VHGVNEIEVTTPDEA-FQSIGNINNSLMTLRTCLEILRENQL--QGTNKIPPFR 312
N + A F+++G N L+ QG F
Sbjct: 125 -NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-----------IFGGQGNTD-DYFE 171
Query: 313 ESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQISKALPSRLDF- 371
E L L+++Y + V D + A + + K L+
Sbjct: 172 E--LRDLYQTY-------------HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 372 ------GLTPGRRKFNEASKKMREILNNEKKMESLASA---MPLIDSGVLYRLRKDVHVE 422
TP + + L S PLI + +L H
Sbjct: 217 EWLENPSNTPDK--------------------DYLLSIPISCPLI---GVIQL---AHYV 250
Query: 423 R-LRMMKERQEEKTKATKSKLSQKFQ----SKMQAQAETYESKLRHNEKKVIRKVKNL-- 475
+++ E K + Q + A+ +++ES + +K I L
Sbjct: 251 VTAKLLGFTPGELRSYLKG-ATGHSQGLVTAVAIAETDSWES-FFVSVRKAIT---VLFF 305
Query: 476 --IDSQ-------LPDTSSLSSCSSGSAPPIP------TPRTITSDYNTRTTRSGKAGDV 520
+ LP + S + P P + DY +T AG
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 521 QSTPNVTARRNA--PAPPRS-----TRRRSRSAGPPTNPAGTWLHHTPGQVLLNTPH--- 570
V +N PP+S R A + + P
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS-------------RIPFSER 412
Query: 571 ----GTVFQPTGWKKRKSVTA------LTDVKDIVDPKLAKYSLMTQEPNTDGEMETHLF 620
F P V + L D+++ L K ++ F
Sbjct: 413 KLKFSNRFLP--------VASPFHSHLLVPASDLINKDLVKNNV--------------SF 450
Query: 621 KVNYLDGDVLPTVGGGAQVVFNELETLRQTSPLSSPVKHRIA 662
+ V T G LR LS + RI
Sbjct: 451 NAKDIQIPVYDTFDG---------SDLRV---LSGSISERIV 480
Score = 54.3 bits (130), Expect = 1e-07
Identities = 69/430 (16%), Positives = 110/430 (25%), Gaps = 197/430 (45%)
Query: 58 GSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLL--LTYGVTGSG 115
G+ YF +E++ +++ Y H LV +LI L L +
Sbjct: 164 GNTDDYF--EELRDLYQ-----------TY----HVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 116 KTYT--------MNGTNS--DGGIMMRCIDVLFNSIGRYQ-------PRKRTFRPDKLN- 157
K +T + ++ D ++ + IG Q + F P +L
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSI-PISCPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 158 -----------------------------------------GFEVQ-----SQVDILLQE 171
G + + + E
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 172 QAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVH 231
+ N E P P L I + ++ E +++ Y+ N+ +
Sbjct: 326 DSLENNE---GVPSPML-----------SISNLTQ-EQVQD---------YVNKTNSHL- 360
Query: 232 DLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNEIEVTTPDEAFQSIGNINNSLMTLR 291
P G I L N G KN V V+ P + SL L
Sbjct: 361 ------PAGKQVEISLVN------GAKN-LV-------VSGPPQ----------SLYGLN 390
Query: 292 TCLEILRENQLQGTNKIPPFRESKLT------------H--------------------L 319
L + ++I PF E KL H
Sbjct: 391 LTLRKAKAPSGLDQSRI-PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 320 FKS-------YFTGDGDVRMIVCVNPRVEDYD--ENLAVMKFAEMSQEVQISKALPSR-- 368
F + Y T DG + RV E + V+ +
Sbjct: 450 FNAKDIQIPVYDTFDGS-------DLRVLSGSISERIVDCII---RLPVKWETTTQFKAT 499
Query: 369 --LDFGLTPG 376
LDFG PG
Sbjct: 500 HILDFG--PG 507
Score = 51.2 bits (122), Expect = 1e-06
Identities = 87/498 (17%), Positives = 150/498 (30%), Gaps = 204/498 (40%)
Query: 135 DVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLK----- 189
VL + ++ + L G ++ + LLQE + L K +K
Sbjct: 82 QVLNLCLTEFE---NCY----LEGNDIHALAAKLLQEN---DTTLVKT--KELIKNYITA 129
Query: 190 RNKSDPEMEPRIKDA--SKVEDIEEDNVYSVF------VSYIE-------IYNNSVHDLL 234
R + + + A V + + ++F Y E Y+ V DL+
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGE-GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 235 EDMPEGNNARIQLNNRLIREDGDKN-MFVHGVN-----EIEVTTPDEAF----------- 277
+ E L+ LIR D +F G+N E TPD+ +
Sbjct: 189 KFSAE------TLSE-LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 278 ---Q-------------SIGNINNSLMTLRTCLE-ILRENQLQGTNKIPPFRESK---LT 317
Q + G + + L + ++ + T+ F S +T
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 318 HLFKSYFTGDGDVRM-----IVCVNPR-VEDYDEN--------LAV--MKFAEMSQEV-Q 360
LF F G VR + P +ED EN L++ + ++ V +
Sbjct: 302 VLF---FIG---VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 361 ISKALP--SRLDFGLTPGRRKFNEASKKMREILNNEKKMESLASAMPLIDSG---VLYRL 415
+ LP +++ L G + ++ SG LY L
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNL---------VV-----------------SGPPQSLYGL 389
Query: 416 RKDVHVERLRMMKERQEEKTKATKSKLSQKFQSKMQAQAETYESKLRHNEKKVIRKVKNL 475
LR K KA S L Q S++ +E RK+K
Sbjct: 390 -----NLTLR--------KAKA-PSGLDQ--------------SRIPFSE----RKLK-- 415
Query: 476 IDSQ-LPDTSSLSSCSSGSAP---PI--PTPRTITSD-----------------YNTRTT 512
++ LP +P + P I D Y+T
Sbjct: 416 FSNRFLPVA----------SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD- 464
Query: 513 RSGKAGDVQS-TPNVTAR 529
G D++ + +++ R
Sbjct: 465 --GS--DLRVLSGSISER 478
Score = 39.3 bits (91), Expect = 0.005
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 51/137 (37%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDIVDPKLAKYSLMTQEPNTDGEMET-HLFK 621
+++N P G K ++ I + YS M E DG+++T +FK
Sbjct: 1663 DIVINNPVNLTIHFGGEKGKR----------IRE----NYSAMIFETIVDGKLKTEKIFK 1708
Query: 622 VNYLDGDVLPTVGGGAQVVFN-ELETLRQTS---P---LSSPVKHRIAAFNARSTEDIEN 674
+ + T F E L T P L AAF ED+++
Sbjct: 1709 ----EINEHST-----SYTFRSEKGLLSATQFTQPALTLME-----KAAF-----EDLKS 1749
Query: 675 RCQMGIE-------GHS 684
+ G+ GHS
Sbjct: 1750 K---GLIPADATFAGHS 1763
Score = 33.5 bits (76), Expect = 0.28
Identities = 29/155 (18%), Positives = 49/155 (31%), Gaps = 40/155 (25%)
Query: 2 ASAKTGKTPRKVAFSQN--NGSSDPLQVFCRIRPMDNSYDESCISVVSD---------TT 50
A A +G ++ FS+ S+ L V P + +++
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVAS---PFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 51 VQLTPP-----DGSNPRYFNNKEVQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGL 105
+ P DGS+ R + + + I + V E A H
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISERIVDCII-----RLPVKWETTTQFKAT--H----- 500
Query: 106 LLTYG---VTGSGKTYTMNGTNSDG-GIMMRCIDV 136
+L +G +G G + N DG G+ R I
Sbjct: 501 ILDFGPGGASGLGV---LTHRNKDGTGV--RVIVA 530
Score = 30.4 bits (68), Expect = 2.5
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 19/107 (17%)
Query: 586 TALTDVKDIVDPKLAKYS--LMTQEPNTDGEMETHLFK-VNYLDGDV-LPTVGGGAQ--- 638
T L K+++ + +M + P + LF+ V +G+ L + GG Q
Sbjct: 114 TTLVKTKELI---KNYITARIMAKRPFDKKS-NSALFRAVG--EGNAQLVAIFGG-QGNT 166
Query: 639 -VVFNELETLRQTS-PLSSPVKHRIAAF---NARSTEDIENRCQMGI 680
F EL L QT L + A R+T D E G+
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Score = 29.6 bits (66), Expect = 4.5
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 27/81 (33%)
Query: 294 LEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFA 353
L+I+ N P LT +F G+ + I R EN + M F
Sbjct: 1662 LDIVINN--------PV----NLT----IHFGGEKG-KRI-----R-----ENYSAMIFE 1694
Query: 354 EMSQEVQISKALPSRLDFGLT 374
+ ++ + ++ T
Sbjct: 1695 TIVDGKLKTEKIFKEINEHST 1715
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 51.5 bits (124), Expect = 2e-08
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 281 GNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRV 340
NIN SL L + L E GT P+R+SK+T + + G+ +++C +P V
Sbjct: 2 KNINKSLSALGNVISALAE----GTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSV 57
Query: 341 EDYDENLAVMKFA 353
+ E + + F
Sbjct: 58 FNEAETKSTLMFG 70
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 45.8 bits (109), Expect = 2e-06
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 284 NNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDY 343
N SL L + L E GT P+R+SK+T + + G+ +++C +P V +
Sbjct: 1 NKSLSALGNVISALAE----GTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNE 56
Query: 344 DENLAVMKFA 353
E + + F
Sbjct: 57 AETKSTLMFG 66
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 0.003
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 422 ERLRMMKERQ----EEKTKATKSKLSQKFQSKMQAQAETYESKLRHNEKKVIRKVKN 474
E +R +E Q +E A+K + + + +A+ + E R +E+ K+ N
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVM---EQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
Score = 33.6 bits (76), Expect = 0.13
Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 26/90 (28%)
Query: 382 EASKKMREILNNEKKMESLASAMPLIDSGVLYRLRKDVHVERLRMMKERQEEKTKATKSK 441
E+ +K RE K+++ D + E++ + K
Sbjct: 85 ESIRKWRE--EQRKRLQ-----------------ELD---AA----SKVMEQEWREKAKK 118
Query: 442 LSQKFQSKMQAQAETYESKLRHNEKKVIRK 471
+++ + Q E + R +K ++
Sbjct: 119 DLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.004
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 10/39 (25%)
Query: 465 EKKVIRKVKNLIDSQLPDTSSLSSCSSGSAPPIPTPRTI 503
EK+ ++K++ +SL + SAP + T+
Sbjct: 18 EKQALKKLQ----------ASLKLYADDSAPALAIKATM 46
Score = 29.5 bits (65), Expect = 1.9
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 8/30 (26%)
Query: 643 ELE-TLRQTSPLSSPVKHRIA-AFNARSTE 670
+L+ +L+ + S+P A A A + E
Sbjct: 24 KLQASLKLYADDSAP-----ALAIKA-TME 47
Score = 28.8 bits (63), Expect = 3.7
Identities = 2/28 (7%), Positives = 12/28 (42%)
Query: 139 NSIGRYQPRKRTFRPDKLNGFEVQSQVD 166
++ + Q + + D +++ ++
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 33.9 bits (77), Expect = 0.11
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 14/47 (29%)
Query: 29 CRIRPMDNSYDES--------CISVVSDTTVQLTPPD-GSNPRYFNN 66
C++ P S C V+SD V D S R F+N
Sbjct: 27 CKVYPPKIVERFSEGDVVCALCGLVLSDKLV-----DTRSEWRTFSN 68
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal
domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Length = 261
Score = 33.7 bits (78), Expect = 0.13
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 93 PLVANLIHAKNGLLLTYGVTGSGKTYTM 120
V L H K GL+L G TGSGK+ T+
Sbjct: 15 DKVLELCHRKMGLILVTGPTGSGKSTTI 42
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase,
hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex
aeolicus} PDB: 2eww_A* 2gsz_A*
Length = 372
Score = 34.1 bits (79), Expect = 0.13
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 93 PLVANLIHAKNGLLLTYGVTGSGKTYTM 120
V L H K GL+L G TGSGK+ T+
Sbjct: 126 DKVLELCHRKMGLILVTGPTGSGKSTTI 153
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
ATPase, ATP-binding, FIMB nucleotide-binding, transport;
HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
3jvu_A*
Length = 356
Score = 34.1 bits (79), Expect = 0.15
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 93 PLVANLIHAKNGLLLTYGVTGSGKTYTM 120
+ + GL+L G TGSGK+ T+
Sbjct: 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTL 140
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 33.5 bits (76), Expect = 0.23
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 58 GSNPRYFNNKEV---QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGS 114
G+ F N+E Y+ ++ ++ ++A L K + YG+TG+
Sbjct: 1 GAMSSIFINREYLLPDYIPDEL----PHREDQIRKIASILAPLYREEKPNNIFIYGLTGT 56
Query: 115 GKTYTMN 121
GKT +
Sbjct: 57 GKTAVVK 63
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex,
hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus
subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A*
1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 33.3 bits (77), Expect = 0.31
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 110 GVTGSGKTYTM 120
G TG+GKT+T+
Sbjct: 39 GATGTGKTFTV 49
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 32.9 bits (76), Expect = 0.35
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 110 GVTGSGKTYTM 120
G TG+GKT TM
Sbjct: 35 GATGTGKTVTM 45
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 31.3 bits (70), Expect = 0.78
Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 10/141 (7%)
Query: 348 AVMKFAEMSQEVQISKALPSRLDFGLTPGRRKFNEAS----KKMREILNNEKKMESLASA 403
+ + A Q ++ KAL + + ++K + M +++ E L
Sbjct: 112 KITELAREKQIAEL-KALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKE 170
Query: 404 M--PLIDSGVLYRLRKDVHVERLRMMKERQEEKTKATKSKLSQKFQSKMQAQAETYESKL 461
+ I V R + E ++ + + + Q + A+ YE KL
Sbjct: 171 INNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAE---YEEKL 227
Query: 462 RHNEKKVIRKVKNLIDSQLPD 482
+ +V VKN + PD
Sbjct: 228 KTLTVEVQEMVKNYMKEVFPD 248
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 31.7 bits (71), Expect = 0.96
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 58 GSNPRYFNNKE---VQYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGS 114
G+ N K VFK+I ++ + + A + + + L G+TG+
Sbjct: 1 GAMEVIKNPKVFIDPLSVFKEI----PFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGT 56
Query: 115 GKTYTMN 121
GKT+
Sbjct: 57 GKTFVSK 63
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 31.0 bits (69), Expect = 1.1
Identities = 21/159 (13%), Positives = 49/159 (30%), Gaps = 19/159 (11%)
Query: 58 GSNPRYFNNKEVQYVFKKIFNVD--VGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSG 115
G N + + + + + Q + ++ + P+ +L+ ++N L S
Sbjct: 1 GPNADINLEESI---RESLQKRELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDST 57
Query: 116 KTYTMNGTNSDGGIMMRCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEM 175
K +N +D L S R + F ++ E+ + + +
Sbjct: 58 KFQLVN----------DVMDELITSSARKE--LPIFDYIHIDALELAGMDALYEKIWFAI 105
Query: 176 NGELTKRTPGPGLKRNKSDPEMEPRIKDASKVEDIEEDN 214
+ E L+ P+ K + I+
Sbjct: 106 SKE--NLCGDISLEALNFYITNVPKAKKRKTLILIQNPE 142
>1p9r_A General secretion pathway protein E; bacterial type II secretion
system cytoplasmic protein - GSPE, putative ATPase/ ATP
binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11
PDB: 1p9w_A*
Length = 418
Score = 31.0 bits (71), Expect = 1.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 87 YSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYT 119
+ H LI +G++L G TGSGK+ T
Sbjct: 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene
silencing, siRNA nucleus, chromatin, transcription;
3.20A {Arabidopsis thaliana}
Length = 115
Score = 29.4 bits (65), Expect = 1.3
Identities = 11/55 (20%), Positives = 22/55 (40%)
Query: 421 VERLRMMKERQEEKTKATKSKLSQKFQSKMQAQAETYESKLRHNEKKVIRKVKNL 475
+E+LR E ++ + KS L + + KM + K E + + +
Sbjct: 41 LEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRKFHEVEAEHNTRTTKI 95
>2gj7_F Glycoprotein E; FC receptor, low resolution, immune
system-virus-viral prote complex; HET: NAG BMA MAN GAL
FUC; 5.00A {Human herpesvirus 1} SCOP: b.1.1.1
Length = 401
Score = 30.8 bits (68), Expect = 1.4
Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 13/105 (12%)
Query: 475 LIDSQLPDTSSLSSCS--SGSAPPIPTPRTITSDYNTRTTRSGKAGDVQSTPNVTARRNA 532
L + D + + P+PTP +DY+ G+ + TP R
Sbjct: 122 LSVGDIKDPARQVASVVLVVQPAPVPTPPPTPADYDEDDNDEGEDESLAGTPASGTPRLP 181
Query: 533 PAPPRSTRRRSRSAGPPTNPAGTWLHHTPG-QVLLNTPHGTVFQP 576
P P A P + P+ + H G V + TP +F P
Sbjct: 182 PPP----------APPRSWPSAPEVSHVRGVTVRMETPEAILFSP 216
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor,
AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA
recombination; HET: T27; 1.80A {Human immunodeficiency
virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B*
3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B*
3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B*
1n5y_B* 1bqm_B* 1n6q_B* ...
Length = 428
Score = 30.9 bits (70), Expect = 1.6
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 563 QVLLNTPHGTVFQPTGWKKRKSVTALTDVKDI-----VDPKLAKYSLMTQEPNTDGEMET 617
+V L PH P G KK+KSVT L DV D +D KY+ T P+ + E
Sbjct: 89 EVQLGIPH-----PAGLKKKKSVTVL-DVGDAYFSVPLDEDFRKYTAFTI-PSINNETPG 141
Query: 618 HLFKVNYLDGDVLPTVGGGAQVVFNE-----LETLRQTSP 652
++ N VLP G+ +F LE ++ +P
Sbjct: 142 IRYQYN-----VLPQGWKGSPAIFQSSMTKILEPFKKQNP 176
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy,
dimerization, image processing, computer-assist
molecular sequence DATA; 10.50A {Hepatitis e virus}
Length = 660
Score = 29.9 bits (66), Expect = 3.0
Identities = 29/177 (16%), Positives = 46/177 (25%), Gaps = 10/177 (5%)
Query: 490 SSGSAPPIPTPRTITSDYNTRTTRSGKAGDVQSTP-NVTARRNAPAPPRSTRRRSRSAGP 548
S A P P + T +G + P R A P ++RRR +AG
Sbjct: 48 SQPFAIPYIHPTNPFAPDVTAAAGAGPRVRQPARPLGSAWRDQAQRPAVASRRRPTTAGA 107
Query: 549 -PTNPAGTWLHHTPGQVLLNTPHGTVFQPTGWKKRKSVTALTDVKDIVDPKLAKYSLMTQ 607
P P + + Q + + T ++ L Q
Sbjct: 108 APLTAVAPAHDTPPVPDVDSRGAILRRQYNLSTSPLTSSVATGTNLVLYAAPLSPLLPLQ 167
Query: 608 EPNTDGEMETH-----LFKVNYLDGDVLPTVG---GGAQVVFNELETLRQTSPLSSP 656
+ M T ++V P V GG + + T
Sbjct: 168 DGTNTHIMATEASNYAQYRVARATIRYRPLVPNAVGGYAISISFWPQTTTTPTSVDM 224
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 29.8 bits (67), Expect = 3.2
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 77 FNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNG 122
+V+ + V A+ L YG G GK+Y +
Sbjct: 126 IDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAA 171
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 29.5 bits (67), Expect = 3.6
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 354 EMSQEVQISKALPSRLDFGLTPGRRKFNEASKKMREILN 392
E + D +R+F E K M ++++
Sbjct: 179 RALDEAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVD 217
>1g8e_A Flagellar transcriptional activator FLHD; genetic regulator, DNA
binding protein; 1.80A {Escherichia coli} SCOP:
a.145.1.1 PDB: 2avu_A
Length = 116
Score = 28.0 bits (62), Expect = 5.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 232 DLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNE 267
+LL+ + + N + + L RLI +D MF G+NE
Sbjct: 5 ELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINE 40
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 28.5 bits (64), Expect = 6.1
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 77 FNVDVGQKQVYSEVAHPLVANL--IHAKNGLLLTYGVTGSGKTYTMNG 122
+++ + A VA GL L +G G GKTY +
Sbjct: 27 VDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYL-HGSFGVGKTYLLAA 73
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain,
protein lysine methyltransferase, transferase; HET: SAM;
2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB:
2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Length = 440
Score = 28.7 bits (63), Expect = 6.8
Identities = 20/161 (12%), Positives = 49/161 (30%), Gaps = 13/161 (8%)
Query: 329 DVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQISKALPSRLDFGLTPGRRKFNEASKKMR 388
+ + ++ +D+ L V + +Q L GL P R
Sbjct: 263 AYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAF 322
Query: 389 EILNNEKKMESLASAMPL---IDSGVLYRLRKDVHVERLRMMKERQEEKTKATKSKLSQK 445
+ + + + + + + +R+ L E+ + + L +
Sbjct: 323 LLESLFRDTIWGHLELSVSRDNEELLCKAVREACK-SALAGYHTTIEQDRELKEGNLDSR 381
Query: 446 FQSKMQAQAETYESKLRHNEKKVIRKVKNLIDSQLPDTSSL 486
A A R EK V++++ + + + + L
Sbjct: 382 -----LAIAVGI----REGEKMVLQQIDGIFEQKELELDQL 413
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 28.7 bits (65), Expect = 7.3
Identities = 11/81 (13%), Positives = 17/81 (20%), Gaps = 19/81 (23%)
Query: 475 LIDSQLPDTSSLSSCSSGSAPPIPTPRTITSDYNTRTTRSGKAGDVQ------STPNVTA 528
L+ L + +L G A T+ +
Sbjct: 265 LMQQGLHEPYNLQKILLGGAKL---SATMIETALQYNLPI-----YNSFGMTETCSQFLT 316
Query: 529 RRNAPAPPRSTRRRSRSAGPP 549
A P R + G P
Sbjct: 317 -----ATPEMLHARPDTVGMP 332
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 28.3 bits (64), Expect = 9.5
Identities = 8/51 (15%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 354 EMSQEVQISKALPSRLDFGLTPGRRKFNEASKKMREILNN--EKKMESLAS 402
M + + S+ ++ G R+ E+ + +R++ + +++ E+L
Sbjct: 169 LMLEGITASRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKR 219
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.371
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,213,694
Number of extensions: 613818
Number of successful extensions: 1227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1110
Number of HSP's successfully gapped: 145
Length of query: 690
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 590
Effective length of database: 3,909,693
Effective search space: 2306718870
Effective search space used: 2306718870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.0 bits)