RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2748
(690 letters)
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 129 bits (325), Expect = 1e-33
Identities = 65/341 (19%), Positives = 128/341 (37%), Gaps = 32/341 (9%)
Query: 26 QVFCRIRPMD----NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDV 81
+V CR RP++ N D+ + TV + Y F ++F
Sbjct: 8 KVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASK-------------PYAFDRVFQSST 54
Query: 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNS---DGGIMMRCIDVLF 138
Q+QVY++ A +V +++ NG + YG T SGKT+TM G GI+ R + +F
Sbjct: 55 SQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIF 114
Query: 139 NSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEME 198
N I K++ FE+ L + ++ N + + + ++ +
Sbjct: 115 NYIYSMDENLEFHI--KVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVC 172
Query: 199 PRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDK 258
+ +++ + + +V + L+ E +L+ +L D
Sbjct: 173 SPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVD--- 229
Query: 259 NMFVHGVNEIEVTTPDEAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTH 318
+ NIN SL L + L E P+R+SK+T
Sbjct: 230 --LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-----TYVPYRDSKMTR 282
Query: 319 LFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEV 359
+ + G+ +++C +P + E + + F + ++ +
Sbjct: 283 ILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 130 bits (327), Expect = 1e-33
Identities = 70/338 (20%), Positives = 135/338 (39%), Gaps = 31/338 (9%)
Query: 26 QVFCRIRPM---DNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVG 82
+VFCRIRP + + + ++TV+L D + + F ++F+
Sbjct: 48 RVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQ--IFSFDQVFHPLSS 105
Query: 83 QKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIG 142
Q ++ V+ PL+ + + N + YG TGSGKTYTM+G G++ R +D+LF+SI
Sbjct: 106 QSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 164
Query: 143 RYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIK 202
Y+ + L+ E+ +L R + + + +
Sbjct: 165 GYRNLGWEYEIK-----------ATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVS 213
Query: 203 DASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFV 262
+ ++ ++ +++ + + + + + LI +K
Sbjct: 214 NITEETVLDPNHLRHLMHTAKMNRATASTA---GNERSSRSHAVTKLELIGRHAEKQEIS 270
Query: 263 HG-VNEIEVTTPD-----EAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKL 316
G +N +++ + NIN SL L + L + Q P+R SKL
Sbjct: 271 VGSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILALLQKQ-----DHIPYRNSKL 325
Query: 317 THLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAE 354
THL G+ M + V+P + + E++ ++FA
Sbjct: 326 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAA 363
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 130 bits (326), Expect = 2e-33
Identities = 68/345 (19%), Positives = 120/345 (34%), Gaps = 27/345 (7%)
Query: 26 QVFCRIRPMD----NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDV 81
V R RP++ + ISV S + + P + + F F+
Sbjct: 33 CVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETA 92
Query: 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM------NGTNSDGGIMMRCID 135
+ VY A PLV + YG TGSGKT+TM N+ GI
Sbjct: 93 SNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASR 152
Query: 136 VLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDP 195
+F + + R +V LL ++A++ R ++ +
Sbjct: 153 DVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSR------QQVQVVG 206
Query: 196 EMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIRED 255
E + A V + +NS ++ RL +
Sbjct: 207 LQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSR-----SHACFQILLRTKGRLHGKF 261
Query: 256 GDKNMFVHGVNEIEVTTPDEAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESK 315
++ + + + IN SL+ L+ C+ L +N+ PFRESK
Sbjct: 262 SLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-----AHTPFRESK 316
Query: 316 LTHLFKSYFTG-DGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEV 359
LT + + F G + MI ++P + + L +++A+ +E+
Sbjct: 317 LTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 361
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 126 bits (317), Expect = 1e-32
Identities = 62/344 (18%), Positives = 126/344 (36%), Gaps = 35/344 (10%)
Query: 26 QVFCRIRPMD----NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDV 81
+V R RP+ D I+V ++ T+ + P + +++ K+F+ V
Sbjct: 3 KVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTV 62
Query: 82 GQKQVYSEVAHPLVAN-LIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNS 140
VY PL+ + + YG TGSGKTYTM G+ G
Sbjct: 63 DNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTP------GI 116
Query: 141 IGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPR 200
TF + ++ L KR + + E
Sbjct: 117 FQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKM----VAALENGKKEVV 172
Query: 201 IKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNM 260
+KD + + ++ + + + + V+ ++ +R + +D +KN
Sbjct: 173 VKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDES-----SRSHAILNIDLKDINKNT 227
Query: 261 FVHGVNEIEVTTPDEAFQSI----------GNINNSLMTLRTCLEILRENQLQGTNKIPP 310
+ + I++ + ++ NIN SL+ L+ C+ + ++ P
Sbjct: 228 SLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK-----NHIP 282
Query: 311 FRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAE 354
FR+S+LT + + F G MI ++P + ++ L ++++
Sbjct: 283 FRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSS 326
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 126 bits (316), Expect = 2e-32
Identities = 79/354 (22%), Positives = 127/354 (35%), Gaps = 32/354 (9%)
Query: 26 QVFCRIRPM---DNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVG 82
QV R RP + I +++ G + K Y F +F
Sbjct: 3 QVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRK--TYTFDMVFGASTK 60
Query: 83 QKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIG 142
Q VY V P++ +I N + YG TG+GKT+TM G S D L I
Sbjct: 61 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGII- 119
Query: 143 RYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIK 202
PR +KL + V + L E N EL + +PR K
Sbjct: 120 ---PRTLHQIFEKLTDNGTEFSVKVSLLEI--YNEELFDLLNPSSDVSERLQMFDDPRNK 174
Query: 203 DASKVEDIEEDNVYSV--FVSYIEIYNNSVHDLLEDMPE-----GNNARIQLNNRLIRED 255
++ +EE V++ +E M + + ++ + D
Sbjct: 175 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 234
Query: 256 GD------KNMFVH---GVNEIEVTTPDEAFQSIGNINNSLMTLRTCLEILRENQLQGTN 306
G+ K V N D+ + GNIN SL+TL + L E
Sbjct: 235 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERT----- 289
Query: 307 KIPPFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQ 360
P+RESKLT + + G +I ++P + +E L+ +++A ++ +
Sbjct: 290 PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNIL 343
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 125 bits (315), Expect = 4e-32
Identities = 70/362 (19%), Positives = 135/362 (37%), Gaps = 52/362 (14%)
Query: 26 QVFCRIRPMD----NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDV 81
+V R+RP + + + I + TT + P + F +
Sbjct: 4 KVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPK------SFSFDYSYWSHT 57
Query: 82 G--------QKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNS--DGGIMM 131
QKQVY ++ ++ + N + YG TG+GK+YTM G GI+
Sbjct: 58 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIP 117
Query: 132 RCIDVLFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRN 191
+ + LF+ I ++ + +V LL + + N +
Sbjct: 118 QLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRV------------ 165
Query: 192 KSDPEMEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRL 251
+ P + P ++D SK+ +++ + S + + ++ E + A +
Sbjct: 166 REHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSH-AVFNIIFTQ 224
Query: 252 IREDGDKNMFVHGV---NEIEVTTPDEAFQS---------IGNINNSLMTLRTCLEILRE 299
R D + N+ V + +++ + A + NIN SL TL + L E
Sbjct: 225 KRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAE 284
Query: 300 NQLQGTNKIP-------PFRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKF 352
P+R+S LT L + G+ M+ ++P +YDE L+ +++
Sbjct: 285 MDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRY 344
Query: 353 AE 354
A+
Sbjct: 345 AD 346
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 123 bits (310), Expect = 1e-31
Identities = 72/351 (20%), Positives = 124/351 (35%), Gaps = 28/351 (7%)
Query: 26 QVFCRIRPMDNS---YDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDVG 82
+V+CRIRP + D S I+V + ++ F KIF+
Sbjct: 4 RVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDT 63
Query: 83 QKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSIG 142
V+ EV LV + + N + YG TGSGKT+TM N GI+ I +FN I
Sbjct: 64 NVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNWIN 120
Query: 143 RYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIK 202
+ + + ++ + + LL+ N + G + I
Sbjct: 121 KLKTKGWDYKVNCEFIEIYNENIVDLLRSD---NNNKEDTSIGLKHEIRHDQETKTTTIT 177
Query: 203 DASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMFV 262
+ + + E+ V + ++ + + E + +
Sbjct: 178 NVTSCKLESEEMVEIILKKANKLRSTASTASNEHSS-----ASHSIFIIHLSGSNAKTGA 232
Query: 263 HGVNEIEVT------------TPDEAFQSIGNINNSLMTLRTCLEILRENQLQGTNKIPP 310
H + + + + NIN SL L + L + T + P
Sbjct: 233 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD--STKRHIP 290
Query: 311 FRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQI 361
FR SKLT+L + TGD M V ++P +E L ++FA ++
Sbjct: 291 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 341
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 119 bits (299), Expect = 5e-30
Identities = 57/350 (16%), Positives = 125/350 (35%), Gaps = 32/350 (9%)
Query: 21 SSDPLQVFCRIRPMD----NSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKI 76
S++ ++V R RP + S + ++ T + + + + F ++
Sbjct: 3 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKE---------AQGSFTFDRV 53
Query: 77 FNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDV 136
F++ Q ++ P V ++++ NG + YG TG+GK+YTM GT+ D I
Sbjct: 54 FDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPR 113
Query: 137 LFNSIGRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPE 196
+ I + ++ ++ + A N L K E
Sbjct: 114 IVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLE 173
Query: 197 MEPRIKDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDG 256
+ N +V + + ++ H + I + + +
Sbjct: 174 IYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIF---------VITITQKNVETGS 224
Query: 257 DKNMFVHGVNEIEVTTPDEA------FQSIGNINNSLMTLRTCLEILRENQLQGTNKIPP 310
K+ + V+ + + IN SL L + L + + + P
Sbjct: 225 AKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGK----SSHVP 280
Query: 311 FRESKLTHLFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQ 360
+R+SKLT + + G+ +I+ +P + E L+ ++F ++ ++
Sbjct: 281 YRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIK 330
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 110 bits (275), Expect = 8e-27
Identities = 70/342 (20%), Positives = 125/342 (36%), Gaps = 28/342 (8%)
Query: 26 QVFCRIRPM----DNSYDESCISVVSDTTVQLTPPDGSNPRYFNNKEVQYVFKKIFNVDV 81
+V+CR+RP+ + + + I V + TV+ D +K Q+++ ++F+ +
Sbjct: 3 RVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKD--------DKAKQHMYDRVFDGNA 54
Query: 82 GQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIMMRCIDVLFNSI 141
Q V+ + LV + + N + YG TGSGKT+T+ G +S+ G+ R + LF +
Sbjct: 55 TQDDVFEDTK-YLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIM 113
Query: 142 GRYQPRKRTFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRI 201
+ + + + VD+LL +QA+ K+ E +
Sbjct: 114 KKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGM-----VSVENVTVV 168
Query: 202 KDASKVEDIEEDNVYSVFVSYIEIYNNSVHDLLEDMPEGNNARIQLNNRLIREDGDKNMF 261
++ E S N + L + I K F
Sbjct: 169 SISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIAR--GKLSF 226
Query: 262 VHGVNEIEVTTPDEA---FQSIGNINNSLMTLRTCLEILRENQLQGTNKIPPFRESKLTH 318
V V A + +IN SL L + L + P+R KLT
Sbjct: 227 VDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-----QHIPYRNHKLTM 281
Query: 319 LFKSYFTGDGDVRMIVCVNPRVEDYDENLAVMKFAEMSQEVQ 360
L G+ M V ++P + DE + +A + +
Sbjct: 282 LMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIV 323
>d2incc1 d.15.12.1 (C:3-85) Toluene, o-xylene monooxygenase
oxygenase subunit TouB {Pseudomonas stutzeri [TaxId:
316]}
Length = 83
Score = 30.1 bits (68), Expect = 0.16
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 85 QVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTMNGTNSDGGIM-MRCIDVLF 138
QV + A+ + +H + +L G + SD G+ +D++F
Sbjct: 27 QVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81
>d1g8ea_ a.145.1.1 (A:) Flagellar transcriptional activator FlhD
{Escherichia coli [TaxId: 562]}
Length = 98
Score = 28.9 bits (65), Expect = 0.62
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 232 DLLEDMPEGNNARIQLNNRLIREDGDKNMFVHGVNE 267
+LL+ + + N + + L RLI +D MF G+NE
Sbjct: 5 ELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINE 40
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 29.5 bits (66), Expect = 0.66
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 422 ERLRMMKERQEEKTKATKSKLSQKFQSKMQAQAETYESKLRHNEKK 467
E R + ++ E+ +K KM++ E E+ L ++
Sbjct: 74 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLER 119
Score = 26.0 bits (57), Expect = 9.6
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 377 RRKFNEASKKMREILNNEKKMESLASAMPLIDSGVLYRLRKDVHVERLRMMKERQEEKTK 436
RRK+ EA E + E + A+ + E+L E +E +
Sbjct: 57 RRKYQEAELLKHLAEKREHEREVIQKAIEEN------NNFIKMAKEKLAQKMESNKENRE 110
Query: 437 ATKSKLSQKFQSKMQAQAETYESK 460
A + + ++ Q K + E ++K
Sbjct: 111 AHLAAMLERLQEKDKHAEEVRKNK 134
>d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus
(Bacillus anthracis) [TaxId: 1392]}
Length = 722
Score = 30.7 bits (69), Expect = 0.69
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 150 TFRPDKLNGFEVQSQVDILLQEQAEMNGELTKRTPGPGLKRNKSDPEMEPRIKDASKVED 209
R D LN ++ + + + N +L P K N E I + S+ D
Sbjct: 644 NDRYDMLNISSLRQDGKTFI-DFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGD 702
Query: 210 IEEDNVYSVFVSYIEIY 226
+ + + + + Y
Sbjct: 703 TSTNGIKKILIFSKKGY 719
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 28.2 bits (61), Expect = 3.0
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 64 FNNKEV---QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAKNGLLLTYGVTGSGKTYTM 120
+ V YV K++ + + +Q+ + + L H L G G+GKT T+
Sbjct: 3 VVDDSVFSPSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATL--LGRPGTGKTVTL 60
Query: 121 N 121
Sbjct: 61 R 61
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 28.0 bits (61), Expect = 3.2
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 81 VGQKQVYSEVAHPLVANLIHAKN--GLLLTYGVTGSGKTYTMNGTNSDGGIMMRCID 135
+GQ+++ ++ L A + LLL +G G GKT + + G+ +R
Sbjct: 12 IGQERLKQKLRVYLEAAKARKEPLEHLLL-FGPPGLGKTTLAHVIAHELGVNLRVTS 67
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 27.4 bits (59), Expect = 5.3
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 64 FNNKEV---QYVFKKIFNVDVGQKQVYSEVAHPLVANLIHAK-NGLLLTYGVTGSGKTYT 119
F ++ V Y+ ++ + + + L++ + N + + G G GKT
Sbjct: 3 FKDRRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTL 62
Query: 120 MNG 122
Sbjct: 63 AKF 65
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 27.2 bits (59), Expect = 5.3
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 81 VGQKQVYSEVAHPLVANLIHAKN-GLLLTYGVTGSGKTYTMNGTNSDGGIMMRCID 135
+GQ+ V +++ L A + + +L G G GKT + S+ +
Sbjct: 12 IGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.371
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,465,918
Number of extensions: 116448
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 28
Length of query: 690
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 598
Effective length of database: 1,144,436
Effective search space: 684372728
Effective search space used: 684372728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.1 bits)