BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2749
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 177 bits (448), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/141 (60%), Positives = 101/141 (71%), Gaps = 32/141 (22%)
Query: 20 LTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQ 79
LTRGLT+A+AKE+L RDGPN+LTPP TPEWIKFC+QLFGGF++LLWIGAILCF+AY IQ
Sbjct: 64 LTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQ 123
Query: 80 ASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIF 139
A+T +EPA+DN LYLG+VL+ VVIVTG F
Sbjct: 124 AATEDEPANDN--------------------------------LYLGVVLSTVVIVTGCF 151
Query: 140 SYYQESKSSAIMDSFKNLVPQ 160
SYYQE+KSS IMDSFKN+VPQ
Sbjct: 152 SYYQEAKSSRIMDSFKNMVPQ 172
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 34/40 (85%)
Query: 172 DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ 211
D L+LG+ L+ V ++TG FSYYQE KSSRIM+SFKNMVPQ
Sbjct: 133 DNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQ 172
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 173 bits (439), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 104/156 (66%), Gaps = 32/156 (20%)
Query: 5 HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
H + + L R L+RGLT A+A E+L RDGPNALTPP TPEW+KFC+QLFGGF++L
Sbjct: 13 HKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSML 72
Query: 65 LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
LWIGAILCF+AY IQA+T EEP +DN LY
Sbjct: 73 LWIGAILCFLAYGIQAATEEEPQNDN--------------------------------LY 100
Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ 160
LG+VL+AVVI+TG FSYYQE+KSS IM+SFKN+VPQ
Sbjct: 101 LGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 136
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 34/40 (85%)
Query: 172 DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ 211
D L+LG+ L+ V +ITG FSYYQE KSS+IMESFKNMVPQ
Sbjct: 97 DNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 136
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 173 bits (438), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 104/156 (66%), Gaps = 32/156 (20%)
Query: 5 HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
H + + L R L+RGLT A+A E+L RDGPNALTPP TPEW+KFC+QLFGGF++L
Sbjct: 19 HKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSML 78
Query: 65 LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
LWIGAILCF+AY IQA+T EEP +DN LY
Sbjct: 79 LWIGAILCFLAYGIQAATEEEPQNDN--------------------------------LY 106
Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ 160
LG+VL+AVVI+TG FSYYQE+KSS IM+SFKN+VPQ
Sbjct: 107 LGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 142
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 34/40 (85%)
Query: 172 DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ 211
D L+LG+ L+ V +ITG FSYYQE KSS+IMESFKNMVPQ
Sbjct: 103 DNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 142
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 96/182 (52%), Gaps = 42/182 (23%)
Query: 5 HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
H + LE+ + T+GL+ + A E+L RDGPNAL PP+ TPE++KF +QL GG L
Sbjct: 54 HQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCL 113
Query: 65 LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
+W+ A +C IA+ IQAS + DDNL Y
Sbjct: 114 MWVAAAICLIAFAIQASEGDLTTDDNL--------------------------------Y 141
Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ----------FRVTQSHVLIFDLL 174
L + L AVV+VTG F YYQE KS+ I+ SFKNLVPQ F++ +++ DL+
Sbjct: 142 LALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLV 201
Query: 175 WL 176
+
Sbjct: 202 EM 203
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 172 DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ 211
D L+L +AL V V+TG F YYQE KS+ I+ SFKN+VPQ
Sbjct: 138 DNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQ 177
>pdb|1BG5|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of
Alpha-Na, K-Atpase As A Fusion Protein With Glutathione
S-Transferase
Length = 254
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 191 SYYQENKSSRIMESFKNMVPQ 211
SYYQE KSS+IMESFKNMVPQ
Sbjct: 227 SYYQEAKSSKIMESFKNMVPQ 247
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 140 SYYQESKSSAIMDSFKNLVPQFRVTQS 166
SYYQE+KSS IM+SFKN+VPQ + S
Sbjct: 227 SYYQEAKSSKIMESFKNMVPQQALVNS 253
>pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5
pdb|4B90|B Chain B, Crystal Structure Of Wt Human Crmp-5
Length = 586
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 91 LTVCDITCCWLFRHAISLVKARAVLNTSK-KGKLYLGIVLTAVVIVTGIFSYYQE 144
+T+ + T C ++ +S + A V+ +K +GK+ L TA +TG+ Y+Q+
Sbjct: 255 ITIANRTHCPIYLVNVSSISAGDVIAAAKMQGKVVLAETTTAHATLTGLHYYHQD 309
>pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5
pdb|4B91|B Chain B, Crystal Structure Of Truncated Human Crmp-5
pdb|4B92|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
pdb|4B92|B Chain B, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
Length = 484
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 91 LTVCDITCCWLFRHAISLVKARAVLNTSK-KGKLYLGIVLTAVVIVTGIFSYYQESKSSA 149
+T+ + T C ++ +S + A V+ +K +GK+ L TA +TG+ Y+Q+ +A
Sbjct: 234 ITIANRTHCPIYLVNVSSISAGDVIAAAKMQGKVVLAETTTAHATLTGLHYYHQDWSHAA 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,021,914
Number of Sequences: 62578
Number of extensions: 219594
Number of successful extensions: 378
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 360
Number of HSP's gapped (non-prelim): 20
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)