Query psy2749
Match_columns 217
No_of_seqs 217 out of 1231
Neff 6.6
Searched_HMMs 46136
Date Sat Aug 17 00:12:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01523 ATPase-IID_K-Na pota 99.9 2E-25 4.3E-30 225.7 12.2 135 2-182 5-144 (1053)
2 KOG0202|consensus 99.9 2.6E-25 5.6E-30 214.6 7.6 135 2-182 3-141 (972)
3 TIGR01106 ATPase-IIC_X-K sodiu 99.9 8.8E-23 1.9E-27 205.9 13.4 146 4-182 17-167 (997)
4 KOG0203|consensus 99.9 9.1E-24 2E-28 203.8 2.5 179 1-212 37-228 (1019)
5 PRK15122 magnesium-transportin 99.9 2.8E-22 6.1E-27 200.4 13.1 141 6-182 30-180 (903)
6 TIGR01522 ATPase-IIA2_Ca golgi 99.9 2.1E-22 4.6E-27 201.0 12.2 134 3-182 3-143 (884)
7 PRK10517 magnesium-transportin 99.9 1.4E-21 3.1E-26 195.3 12.6 130 6-182 52-191 (902)
8 TIGR01524 ATPase-IIIB_Mg magne 99.9 2.1E-21 4.6E-26 193.5 11.4 132 4-182 16-157 (867)
9 TIGR01517 ATPase-IIB_Ca plasma 99.8 6.9E-21 1.5E-25 191.2 13.0 144 6-182 42-192 (941)
10 KOG0204|consensus 99.8 5.9E-21 1.3E-25 184.7 6.2 139 6-182 101-246 (1034)
11 PF00690 Cation_ATPase_N: Cati 99.8 1.4E-19 3E-24 127.6 7.9 68 4-72 2-69 (69)
12 TIGR01647 ATPase-IIIA_H plasma 99.8 1.3E-19 2.8E-24 178.4 9.3 114 23-182 1-118 (755)
13 COG0474 MgtA Cation transport 99.8 8.5E-19 1.8E-23 175.7 9.1 138 2-182 22-166 (917)
14 smart00831 Cation_ATPase_N Cat 99.7 3.7E-17 8E-22 113.2 7.7 62 14-76 2-63 (64)
15 KOG0205|consensus 99.6 2.9E-16 6.2E-21 149.2 7.8 136 6-182 21-160 (942)
16 TIGR01657 P-ATPase-V P-type AT 99.5 1.6E-14 3.5E-19 146.9 9.6 115 21-182 137-255 (1054)
17 TIGR01116 ATPase-IIA1_Ca sarco 99.2 2.1E-11 4.5E-16 122.8 6.1 95 53-182 1-99 (917)
18 KOG0203|consensus 99.1 2E-11 4.2E-16 119.2 1.8 116 100-216 36-168 (1019)
19 TIGR01523 ATPase-IID_K-Na pota 98.6 2.1E-08 4.6E-13 102.5 3.5 115 101-216 5-123 (1053)
20 KOG0208|consensus 98.6 1.1E-07 2.4E-12 94.6 7.0 116 20-182 157-276 (1140)
21 KOG0202|consensus 98.5 3.9E-08 8.4E-13 96.6 0.8 113 103-216 4-120 (972)
22 PRK01122 potassium-transportin 98.3 1.5E-06 3.2E-11 85.4 7.1 97 55-182 29-131 (679)
23 PRK14010 potassium-transportin 98.3 1.3E-06 2.8E-11 85.7 6.0 94 55-182 28-131 (673)
24 TIGR01106 ATPase-IIC_X-K sodiu 98.1 2.7E-06 5.7E-11 86.9 3.8 117 99-216 13-146 (997)
25 TIGR01497 kdpB K+-transporting 98.0 1.2E-05 2.6E-10 78.9 6.8 96 55-182 28-132 (675)
26 PRK10517 magnesium-transportin 97.9 5.1E-06 1.1E-10 84.1 2.9 112 103-216 49-164 (902)
27 PRK15122 magnesium-transportin 97.9 6.6E-06 1.4E-10 83.3 3.3 112 103-216 27-153 (903)
28 TIGR01524 ATPase-IIIB_Mg magne 97.9 8.5E-06 1.8E-10 82.2 3.1 114 101-216 13-130 (867)
29 TIGR01522 ATPase-IIA2_Ca golgi 97.8 1E-05 2.2E-10 81.8 3.2 114 102-216 3-122 (884)
30 TIGR01512 ATPase-IB2_Cd heavy 97.7 5.1E-05 1.1E-09 72.6 5.4 61 122-182 17-81 (536)
31 TIGR01652 ATPase-Plipid phosph 97.4 0.00025 5.4E-09 73.0 5.7 104 36-182 1-112 (1057)
32 COG0474 MgtA Cation transport 97.3 8.9E-05 1.9E-09 75.3 1.0 115 101-216 21-145 (917)
33 TIGR01525 ATPase-IB_hvy heavy 97.2 0.00054 1.2E-08 65.8 5.4 60 123-182 18-82 (556)
34 PRK11033 zntA zinc/cadmium/mer 97.1 0.0011 2.4E-08 66.0 6.4 62 121-182 204-269 (741)
35 TIGR01116 ATPase-IIA1_Ca sarco 96.8 0.001 2.2E-08 67.7 3.9 46 171-216 33-78 (917)
36 PF00122 E1-E2_ATPase: E1-E2 A 96.8 0.00095 2E-08 56.3 2.7 55 128-182 1-60 (230)
37 TIGR01647 ATPase-IIIA_H plasma 96.3 0.0015 3.3E-08 65.1 1.3 68 149-216 26-97 (755)
38 TIGR01517 ATPase-IIB_Ca plasma 96.1 0.0048 1E-07 63.0 3.7 108 107-215 43-170 (941)
39 KOG0209|consensus 93.5 0.18 4E-06 50.8 6.5 122 8-182 150-279 (1160)
40 TIGR01511 ATPase-IB1_Cu copper 92.0 0.45 9.7E-06 46.1 6.9 60 123-182 53-118 (562)
41 KOG0205|consensus 92.0 0.082 1.8E-06 52.0 1.8 109 104-215 19-138 (942)
42 PF00690 Cation_ATPase_N: Cati 91.7 0.15 3.2E-06 35.3 2.4 58 103-161 1-58 (69)
43 PRK14010 potassium-transportin 91.1 0.14 3E-06 50.8 2.3 42 173-214 61-107 (673)
44 PRK10671 copA copper exporting 90.1 0.76 1.7E-05 46.5 6.7 60 123-182 285-349 (834)
45 PLN03190 aminophospholipid tra 89.2 0.69 1.5E-05 48.7 5.7 105 35-182 86-197 (1178)
46 TIGR01494 ATPase_P-type ATPase 88.9 0.13 2.8E-06 48.8 0.1 52 131-182 4-60 (499)
47 TIGR01512 ATPase-IB2_Cd heavy 87.6 0.34 7.4E-06 46.5 2.1 43 174-216 18-60 (536)
48 PRK01122 potassium-transportin 86.3 0.45 9.9E-06 47.3 2.2 44 172-215 64-108 (679)
49 TIGR01497 kdpB K+-transporting 73.6 2.2 4.7E-05 42.5 2.2 43 173-215 66-109 (675)
50 COG2217 ZntA Cation transport 72.1 13 0.00029 37.3 7.2 59 124-182 175-238 (713)
51 PF12368 DUF3650: Protein of u 71.2 3.5 7.5E-05 24.0 1.7 15 21-35 13-27 (28)
52 TIGR01525 ATPase-IB_hvy heavy 69.4 2.8 6E-05 40.4 1.8 40 176-215 20-59 (556)
53 PF09925 DUF2157: Predicted me 65.9 57 0.0012 25.6 8.5 47 22-76 7-54 (145)
54 PF06738 DUF1212: Protein of u 63.7 50 0.0011 26.9 8.0 25 7-35 69-93 (193)
55 PRK11033 zntA zinc/cadmium/mer 56.4 6.7 0.00015 39.4 1.8 41 175-215 207-247 (741)
56 TIGR01657 P-ATPase-V P-type AT 49.7 9.9 0.00022 39.7 1.9 43 172-215 191-233 (1054)
57 PF04835 Pox_A9: A9 protein co 45.5 45 0.00097 22.4 3.8 30 45-74 18-47 (54)
58 PF06645 SPC12: Microsomal sig 44.6 87 0.0019 22.2 5.6 23 58-80 10-32 (76)
59 PF06923 GutM: Glucitol operon 42.6 24 0.00052 26.9 2.6 33 175-207 3-35 (109)
60 PF12534 DUF3733: Leucine-rich 41.5 16 0.00034 25.5 1.3 37 34-70 8-44 (65)
61 PF13625 Helicase_C_3: Helicas 40.3 28 0.0006 26.8 2.7 35 4-43 40-74 (129)
62 TIGR03147 cyt_nit_nrfF cytochr 39.1 1.1E+02 0.0024 24.1 5.9 47 21-70 71-118 (126)
63 PRK08568 preprotein translocas 39.0 71 0.0015 30.4 5.7 18 22-39 364-381 (462)
64 KOG0206|consensus 35.2 19 0.00042 38.1 1.3 105 32-180 28-140 (1151)
65 PRK10352 nickel transporter pe 34.2 3.4E+02 0.0074 24.2 10.1 41 23-63 45-104 (314)
66 PRK10914 dipeptide transporter 33.7 3.6E+02 0.0078 24.3 10.2 39 23-61 43-100 (339)
67 PF08006 DUF1700: Protein of u 33.3 2.6E+02 0.0056 22.6 8.6 14 29-42 57-70 (181)
68 PRK10144 formate-dependent nit 31.2 1.9E+02 0.0042 22.7 6.1 44 21-67 71-115 (126)
69 PF12751 Vac7: Vacuolar segreg 30.7 67 0.0014 30.0 3.9 34 44-77 293-326 (387)
70 TIGR00967 3a0501s007 preprotei 30.5 1.6E+02 0.0035 27.4 6.6 18 22-39 314-331 (410)
71 TIGR02789 nickel_nikB nickel A 30.3 2.8E+02 0.0061 24.5 7.9 39 23-61 45-102 (314)
72 PRK09204 secY preprotein trans 27.8 2.4E+02 0.0052 26.5 7.2 16 24-39 330-345 (426)
73 PRK12907 secY preprotein trans 27.1 1.5E+02 0.0033 28.0 5.7 52 24-75 332-386 (434)
74 cd08760 Cyt_b561_FRRS1_like Eu 26.9 3.4E+02 0.0074 22.0 7.3 60 123-197 106-165 (191)
75 PF03918 CcmH: Cytochrome C bi 26.3 41 0.00088 27.1 1.5 48 22-72 72-120 (148)
76 PRK13852 type IV secretion sys 24.2 87 0.0019 28.2 3.4 34 44-77 188-221 (295)
77 PRK09499 sifB secreted effecto 24.1 45 0.00098 29.6 1.5 19 44-62 20-38 (316)
78 CHL00161 secY preprotein trans 24.1 3E+02 0.0065 25.8 7.1 28 130-157 388-415 (417)
79 COG4649 Uncharacterized protei 23.5 65 0.0014 27.3 2.3 35 121-155 27-63 (221)
80 TIGR01511 ATPase-IB1_Cu copper 23.3 50 0.0011 32.0 1.8 37 179-215 59-95 (562)
81 PRK10234 DNA-binding transcrip 22.9 79 0.0017 24.6 2.5 26 183-208 12-37 (118)
82 KOG1326|consensus 21.6 1.7E+02 0.0036 30.9 5.1 49 23-71 1021-1084(1105)
83 smart00540 LEM in nuclear memb 21.5 1.1E+02 0.0024 19.5 2.6 23 22-44 4-26 (44)
84 TIGR01557 myb_SHAQKYF myb-like 21.2 1.5E+02 0.0032 19.9 3.3 26 7-36 28-53 (57)
85 COG4062 MtrB Tetrahydromethano 20.5 2.8E+02 0.006 21.1 4.9 40 38-77 61-100 (108)
No 1
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.92 E-value=2e-25 Score=225.68 Aligned_cols=135 Identities=24% Similarity=0.258 Sum_probs=127.4
Q ss_pred ccccc-CHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc
Q psy2749 2 GLTHA-KAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQA 80 (217)
Q Consensus 2 ~~~~~-~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~ 80 (217)
+.||. +++++++.|+ |+..+|||++||++|+++||+|++++++++|+|++|+++|+||++++|+++|++|++++
T Consensus 5 ~~~~~~~~~~v~~~l~-t~~~~GLs~~ea~~rl~~~G~N~l~~~~~~s~~~~~l~q~~~~~~~iL~~aails~~~~---- 79 (1053)
T TIGR01523 5 NAYFSDIADEAAEFIG-TSIPEGLTHDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAAAISFAMH---- 79 (1053)
T ss_pred CchhhCCHHHHHHHhC-cCcccCCCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHh----
Confidence 56775 9999999999 98889999999999999999999999999999999999999999999999999999874
Q ss_pred cCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCc
Q psy2749 81 STVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ 160 (217)
Q Consensus 81 ~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~ 160 (217)
+|.+|++|++++++|+.++++||+++++++++|+++.++
T Consensus 80 -----------------------------------------~~~~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~ 118 (1053)
T TIGR01523 80 -----------------------------------------DWIEGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASP 118 (1053)
T ss_pred -----------------------------------------hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 499999999999999999999999999999999999999
Q ss_pred eeEEeeecch----hhhhhhhhhhhh
Q psy2749 161 FRVTQSHVLI----FDLLWLGIALTF 182 (217)
Q Consensus 161 ~~~ViR~g~~----~~~l~lg~iL~~ 182 (217)
+++|+|||.. .+++++|||+.+
T Consensus 119 ~~~ViRdg~~~~I~a~eLVpGDIv~L 144 (1053)
T TIGR01523 119 MAHVIRNGKSDAIDSHDLVPGDICLL 144 (1053)
T ss_pred ceEEEeCCeeeecCHhhCCCCCEEEE
Confidence 9999999975 469999999877
No 2
>KOG0202|consensus
Probab=99.91 E-value=2.6e-25 Score=214.56 Aligned_cols=135 Identities=20% Similarity=0.288 Sum_probs=125.6
Q ss_pred cccccCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcc
Q psy2749 2 GLTHAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAS 81 (217)
Q Consensus 2 ~~~~~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~ 81 (217)
+.|..+++|+++.|+ ||+++|||++|+.+|+++||.|+++....+|+|+++++||.|+++.||+++|++||++.
T Consensus 3 ~~~~~~v~e~~~~f~-t~~~~GLt~~ev~~r~~~yG~Nel~~ee~~~~wk~vLeQF~n~Li~iLL~sA~ISfvl~----- 76 (972)
T KOG0202|consen 3 EAHAKSVSEVLAEFG-TDLEEGLTSDEVTRRRKKYGENELPAEEGESLWKLVLEQFDNPLILILLLSAAISFVLA----- 76 (972)
T ss_pred chhcCcHHHHHHHhC-cCcccCCCHHHHHHHHHhcCCccCccccCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----
Confidence 345569999999999 99999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCce
Q psy2749 82 TVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQF 161 (217)
Q Consensus 82 ~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~ 161 (217)
.|.++++|..++++|+.+++||||++||++++|+++.++.
T Consensus 77 ----------------------------------------~~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~ 116 (972)
T KOG0202|consen 77 ----------------------------------------DFDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPPM 116 (972)
T ss_pred ----------------------------------------hcccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCcc
Confidence 2678899999999999999999999999999999999999
Q ss_pred eEEeeecch----hhhhhhhhhhhh
Q psy2749 162 RVTQSHVLI----FDLLWLGIALTF 182 (217)
Q Consensus 162 ~~ViR~g~~----~~~l~lg~iL~~ 182 (217)
++|+|+|+. ..++|+|||...
T Consensus 117 ~~V~R~gk~~~i~A~eLVPGDiV~l 141 (972)
T KOG0202|consen 117 AHVLRSGKLQHILARELVPGDIVEL 141 (972)
T ss_pred ceEEecCcccceehhccCCCCEEEE
Confidence 999999975 359999998654
No 3
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.89 E-value=8.8e-23 Score=205.87 Aligned_cols=146 Identities=56% Similarity=0.961 Sum_probs=128.6
Q ss_pred cc-cCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccC
Q psy2749 4 TH-AKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAST 82 (217)
Q Consensus 4 ~~-~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~ 82 (217)
|| .+.++++++|+ |+..+|||++||++|+++||+|++++++++++|++|+++|++|++++|+++|++|++++.+....
T Consensus 17 ~~~~~~~~~~~~l~-t~~~~GLs~~e~~~rl~~~G~N~l~~~~~~~~~~~~l~~~~~~~~~iL~~aa~l~~~~~~~~~~~ 95 (997)
T TIGR01106 17 DHKLSLDELERKYG-TDLSKGLSAARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAILCFLAYGIQAST 95 (997)
T ss_pred chhCCHHHHHHHhC-cCcccCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc
Confidence 55 59999999999 99889999999999999999999999999999999999999999999999999999876654211
Q ss_pred CCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCcee
Q psy2749 83 VEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFR 162 (217)
Q Consensus 83 ~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~ 162 (217)
+ ++ ...+.|++|++|++++++++.++++||+|+++.+++|+++.+.++
T Consensus 96 ~-~~-------------------------------~~~~~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~ 143 (997)
T TIGR01106 96 E-EE-------------------------------PQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQA 143 (997)
T ss_pred C-CC-------------------------------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCee
Confidence 1 00 011359999999999999999999999999999999999999999
Q ss_pred EEeeecch----hhhhhhhhhhhh
Q psy2749 163 VTQSHVLI----FDLLWLGIALTF 182 (217)
Q Consensus 163 ~ViR~g~~----~~~l~lg~iL~~ 182 (217)
+|+|+|.. .+++++||++.+
T Consensus 144 ~ViRdg~~~~I~~~~lv~GDiv~l 167 (997)
T TIGR01106 144 LVIRDGEKMSINAEQVVVGDLVEV 167 (997)
T ss_pred EEEECCEEEEeeHHHCCCCCEEEE
Confidence 99999975 469999998876
No 4
>KOG0203|consensus
Probab=99.88 E-value=9.1e-24 Score=203.83 Aligned_cols=179 Identities=53% Similarity=0.802 Sum_probs=160.8
Q ss_pred CcccccCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc
Q psy2749 1 MGLTHAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQA 80 (217)
Q Consensus 1 ~~~~~~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~ 80 (217)
|+.++.+.+|++++++ +|..+|||.++|++++++.|+|.++|||..+.|.+|++|+++.+.++||++|++||+.+.+++
T Consensus 37 ~~~H~~~~~eL~~r~~-t~~~~Glt~~~A~~~L~rdG~NaL~Ppk~t~~wikf~kq~f~~~~ill~~~a~l~~~~y~~~~ 115 (1019)
T KOG0203|consen 37 MDDHKLSVDELCERYG-TSVSQGLTSQEAAEKLARDGPNALTPPKTTPEWIKFLRQLFGGFSILLWIGAILCFVAYGIQA 115 (1019)
T ss_pred eccccCCHHHHHHHhc-CChhhcccHHHHHhhhccCCCCCCCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc
Confidence 4556679999999999 999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCc
Q psy2749 81 STVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQ 160 (217)
Q Consensus 81 ~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~ 160 (217)
+..++++.+| ++.|+++..++++.++++|+||.++++.+++++++++.
T Consensus 116 s~~~~~~~~n--------------------------------ly~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~ 163 (1019)
T KOG0203|consen 116 STEDDPSDDN--------------------------------LYLGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQ 163 (1019)
T ss_pred ccCCCCCCcc--------------------------------eEEEEEEEEEEEEEecCCCccchhhHHHHHHHhccchh
Confidence 6555554444 78999999999999999999999999999999999999
Q ss_pred eeEEeeecch----hhhhhhhhhhhh---------hhhhhchhhhhhhhhHHHHHHHHhhcCCCC
Q psy2749 161 FRVTQSHVLI----FDLLWLGIALTF---------VNVITGLFSYYQENKSSRIMESFKNMVPQV 212 (217)
Q Consensus 161 ~~~ViR~g~~----~~~l~lg~iL~~---------Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~ 212 (217)
+++|+|+|.. .+++++||++.. +.++.+..-++|+++-..-+|.+..+.+..
T Consensus 164 ~~~ViRdg~k~~i~~eelVvGD~v~vk~GdrVPADiRiis~~g~~vdnsslTGesEP~~~~~~~t 228 (1019)
T KOG0203|consen 164 QALVIRDGEKMTINAEELVVGDLVEVKGGDRVPADIRIISATGCKVDNSSLTGESEPQTRSPEFT 228 (1019)
T ss_pred hheeeecceeEEechhhcccccceeeccCCcccceeEEEEecceeEeccccccccCCccCCcccc
Confidence 9999999985 469999997665 778889999999999888888877776654
No 5
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.88 E-value=2.8e-22 Score=200.40 Aligned_cols=141 Identities=20% Similarity=0.283 Sum_probs=125.3
Q ss_pred cCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCC
Q psy2749 6 AKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEE 85 (217)
Q Consensus 6 ~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~ 85 (217)
.+.+++++.|+ ++ .+|||++||++|+++||+|++++++++++|++|+++|+||++++|+++|++|++++.+.+...
T Consensus 30 ~~~~~v~~~l~-~~-~~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~l~~f~~~~~~iL~~aa~ls~~~~~~~~~~~-- 105 (903)
T PRK15122 30 NSLEETLANLN-TH-RQGLTEEDAAERLQRYGPNEVAHEKPPHALVQLLQAFNNPFIYVLMVLAAISFFTDYWLPLRR-- 105 (903)
T ss_pred CCHHHHHHHhC-CC-CCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccC--
Confidence 48899999999 88 589999999999999999999999999999999999999999999999999999976543110
Q ss_pred CCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe
Q psy2749 86 PADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ 165 (217)
Q Consensus 86 ~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi 165 (217)
...++|.++++|++++++++.++++||+++++++++|+++.++.++|+
T Consensus 106 --------------------------------~~~~~~~~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~ 153 (903)
T PRK15122 106 --------------------------------GEETDLTGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVL 153 (903)
T ss_pred --------------------------------CccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEE
Confidence 011369999999999999999999999999999999999999999999
Q ss_pred eec------c----hhhhhhhhhhhhh
Q psy2749 166 SHV------L----IFDLLWLGIALTF 182 (217)
Q Consensus 166 R~g------~----~~~~l~lg~iL~~ 182 (217)
|+| . ..+++++||++.+
T Consensus 154 Rdg~~~~~g~~~~I~~~eLv~GDiV~l 180 (903)
T PRK15122 154 RRGHAGAEPVRREIPMRELVPGDIVHL 180 (903)
T ss_pred ECCccCCCCeEEEEEHHHCCCCCEEEE
Confidence 995 3 2469999999776
No 6
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.88 E-value=2.1e-22 Score=200.97 Aligned_cols=134 Identities=18% Similarity=0.206 Sum_probs=124.8
Q ss_pred ccc-cCHHHHHHHcCCCCCCCCCC-HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhhh
Q psy2749 3 LTH-AKAKEVLERDGPNALTRGLT-HAKAKEVLERDGPNALTPPKQTPEWIKFCKQL-FGGFALLLWIGAILCFIAYTIQ 79 (217)
Q Consensus 3 ~~~-~~~~~l~~~l~~t~~~~GLt-~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~-~d~~~~iL~~~ails~~~~~~~ 79 (217)
.|| .+.+++++.|+ |+.++||| ++|+++|+++||+|++++++++|+|++|+++| .||++++|++++++|++++
T Consensus 3 ~~~~~~~~~v~~~l~-t~~~~GLs~~~ev~~r~~~~G~N~i~~~~~~s~~~~~l~~~~~~~~~~~L~~aa~ls~~~g--- 78 (884)
T TIGR01522 3 QYCELSVEETCSKLQ-TDLQNGLNSSQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILLLIASAVISVFMG--- 78 (884)
T ss_pred chhhCCHHHHHHHhC-cCcccCCCcHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhChHHHHHHHHHHHHHHHc---
Confidence 455 49999999999 99889999 89999999999999999999999999999999 9999999999999999873
Q ss_pred ccCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCC
Q psy2749 80 ASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVP 159 (217)
Q Consensus 80 ~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~ 159 (217)
+|.++++|++++++++.++++||+++++.+++|+++.+
T Consensus 79 ------------------------------------------~~~~~~~i~~~i~~~~~i~~~qe~~a~~~l~~L~~l~~ 116 (884)
T TIGR01522 79 ------------------------------------------NIDDAVSITLAILIVVTVGFVQEYRSEKSLEALNKLVP 116 (884)
T ss_pred ------------------------------------------chhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 48999999999999999999999999999999999999
Q ss_pred ceeEEeeecch----hhhhhhhhhhhh
Q psy2749 160 QFRVTQSHVLI----FDLLWLGIALTF 182 (217)
Q Consensus 160 ~~~~ViR~g~~----~~~l~lg~iL~~ 182 (217)
++++|+|||.. .+++++||++.+
T Consensus 117 ~~~~ViRdg~~~~I~~~eLv~GDiv~l 143 (884)
T TIGR01522 117 PECHLIREGKLEHVLASTLVPGDLVCL 143 (884)
T ss_pred CeeEEEECCEEEEEEHHHCccCCEEEe
Confidence 99999999975 469999999876
No 7
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.86 E-value=1.4e-21 Score=195.26 Aligned_cols=130 Identities=21% Similarity=0.322 Sum_probs=120.5
Q ss_pred cCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCC
Q psy2749 6 AKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEE 85 (217)
Q Consensus 6 ~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~ 85 (217)
.+.+++++.|+ ++. +|||++||++|+++||+|+++.++++|+|++++++|+|||+++|+++|++|++++
T Consensus 52 ~~~~~v~~~l~-~~~-~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~lL~~aa~ls~~~~--------- 120 (902)
T PRK10517 52 MPEEELWKTFD-THP-EGLNEAEVESAREQHGENELPAQKPLPWWVHLWVCYRNPFNILLTILGAISYATE--------- 120 (902)
T ss_pred CCHHHHHHHhC-CCC-CCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHc---------
Confidence 47899999999 885 7999999999999999999999999999999999999999999999999999873
Q ss_pred CCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe
Q psy2749 86 PADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ 165 (217)
Q Consensus 86 ~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi 165 (217)
+|.++++|++++++++.++++||+|+++++++|+++.+++++|+
T Consensus 121 ------------------------------------~~~~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~Vi 164 (902)
T PRK10517 121 ------------------------------------DLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVL 164 (902)
T ss_pred ------------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 48999999999999999999999999999999999999999999
Q ss_pred eec------ch----hhhhhhhhhhhh
Q psy2749 166 SHV------LI----FDLLWLGIALTF 182 (217)
Q Consensus 166 R~g------~~----~~~l~lg~iL~~ 182 (217)
|+| .. .+++++||++.+
T Consensus 165 R~g~~~~~g~~~~I~~~eLvpGDiV~l 191 (902)
T PRK10517 165 RVINDKGENGWLEIPIDQLVPGDIIKL 191 (902)
T ss_pred ECCccCCCCeEEEEEHHhCCCCCEEEE
Confidence 994 32 469999999776
No 8
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.85 E-value=2.1e-21 Score=193.46 Aligned_cols=132 Identities=20% Similarity=0.305 Sum_probs=122.1
Q ss_pred cccCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCC
Q psy2749 4 THAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTV 83 (217)
Q Consensus 4 ~~~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~ 83 (217)
+..+.+++++.|+ ++. +|||++||++|+++||+|++++++++++|++++++|+||++++|++++++|++++
T Consensus 16 ~~~~~~~~~~~l~-~~~-~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~p~~~iL~~~a~ls~~~~------- 86 (867)
T TIGR01524 16 SQMGKETLLRKLG-VHE-TGLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYILAMLMGVSYLTD------- 86 (867)
T ss_pred HhCCHHHHHHHhC-CCC-CCCCHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHh-------
Confidence 4458899999999 874 7999999999999999999999998999999999999999999999999999873
Q ss_pred CCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeE
Q psy2749 84 EEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRV 163 (217)
Q Consensus 84 ~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ 163 (217)
+|.++++|++++++++.++++||+|+++++++|+++.++.++
T Consensus 87 --------------------------------------~~~~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~ 128 (867)
T TIGR01524 87 --------------------------------------DLEATVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTAT 128 (867)
T ss_pred --------------------------------------hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeE
Confidence 489999999999999999999999999999999999999999
Q ss_pred Eee------ecch----hhhhhhhhhhhh
Q psy2749 164 TQS------HVLI----FDLLWLGIALTF 182 (217)
Q Consensus 164 ViR------~g~~----~~~l~lg~iL~~ 182 (217)
|+| ||.. .+++++||++.+
T Consensus 129 V~R~~~~~~dg~~~~I~~~eLv~GDiV~l 157 (867)
T TIGR01524 129 VLRVINENGNGSMDEVPIDALVPGDLIEL 157 (867)
T ss_pred EEEecccCCCCeEEEEEhhcCCCCCEEEE
Confidence 999 7864 469999999876
No 9
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.85 E-value=6.9e-21 Score=191.22 Aligned_cols=144 Identities=11% Similarity=0.072 Sum_probs=124.9
Q ss_pred cCHHHHHHHcCCCCCCCCCC--HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCC
Q psy2749 6 AKAKEVLERDGPNALTRGLT--HAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTV 83 (217)
Q Consensus 6 ~~~~~l~~~l~~t~~~~GLt--~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~ 83 (217)
.+.++++++|+ |+.++||| ++||++|+++||+|++++++++++|++++++|++|++++|++++++|++++.+.+...
T Consensus 42 ~~~~~~~~~l~-t~~~~GLs~~~~ev~~r~~~yG~N~l~~~~~~s~~~~~~~~f~~~~~~~l~~~ails~~~~~~~~~~~ 120 (941)
T TIGR01517 42 GGAEGIATKLK-TDLNEGVRLSSSTLERREKVYGKNELPEKPPKSFLQIVWAALSDQTLILLSVAAVVSLVLGLPEPGEG 120 (941)
T ss_pred CCHHHHHHHhC-cCcccCCCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhcccccc
Confidence 37889999999 99889999 9999999999999999999999999999999999999999999999999875432100
Q ss_pred CCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhcc-CCcee
Q psy2749 84 EEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNL-VPQFR 162 (217)
Q Consensus 84 ~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~-~~~~~ 162 (217)
. . +...+|+++++|++++++++.++++||+++++.+++|++. .++.+
T Consensus 121 -~---~----------------------------~~~~~~~~~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~ 168 (941)
T TIGR01517 121 -K---A----------------------------DTETGWIEGVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKI 168 (941)
T ss_pred -c---C----------------------------ccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCce
Confidence 0 0 0113599999999999999999999999999999999875 46799
Q ss_pred EEeeecch----hhhhhhhhhhhh
Q psy2749 163 VTQSHVLI----FDLLWLGIALTF 182 (217)
Q Consensus 163 ~ViR~g~~----~~~l~lg~iL~~ 182 (217)
+|+|||.. .+++++||++.+
T Consensus 169 ~ViRdG~~~~I~~~~Lv~GDiV~l 192 (941)
T TIGR01517 169 AVIRGGQEQQISIHDIVVGDIVSL 192 (941)
T ss_pred EEEECCEEEEEeHHHCCCCCEEEE
Confidence 99999975 469999999876
No 10
>KOG0204|consensus
Probab=99.82 E-value=5.9e-21 Score=184.70 Aligned_cols=139 Identities=8% Similarity=-0.011 Sum_probs=124.1
Q ss_pred cCHHHHHHHcCCCCCCCCCCH--HHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCC
Q psy2749 6 AKAKEVLERDGPNALTRGLTH--AKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTV 83 (217)
Q Consensus 6 ~~~~~l~~~l~~t~~~~GLt~--~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~ 83 (217)
-.+++++++|+ ||+..||+. +|..+|++.||.|.+|++|+++||+++|++|+|..++||.++|++|++++++.+.-
T Consensus 101 gGv~gL~~~LK-t~~~~Gi~~~~~el~~Rr~~fG~N~~p~k~~K~Fl~fvweA~qD~TLiIL~vaAvvSl~lgi~~~g~- 178 (1034)
T KOG0204|consen 101 GGVEGLCKKLK-TDPNEGISGEDDELERRRKIFGSNTYPEKPPKGFLRFVWEALQDVTLIILMVAAVVSLGLGIYTPGI- 178 (1034)
T ss_pred cCHHHHHHHhc-cCcccCCCCChHHHHHHHHhcCCCCCCCCCCccHHHHHHHHhccchHHHHHHHHHHHHhhhhccCCC-
Confidence 47899999999 999999997 88899999999999999999999999999999999999999999999999887521
Q ss_pred CCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCC-cee
Q psy2749 84 EEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVP-QFR 162 (217)
Q Consensus 84 ~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~-~~~ 162 (217)
..+|++|.+|++.|++.++++...+|+.++.++.|++... .+.
T Consensus 179 ------------------------------------~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~~L~~~k~~~k~ 222 (1034)
T KOG0204|consen 179 ------------------------------------EDGWIEGVAILLSVILVVLVTAVNDYRQELQFRKLQKEKRNIKF 222 (1034)
T ss_pred ------------------------------------CcccccchhheeeEEEEEEEeecchhHHhhhhhhhhhhhhceEE
Confidence 1269999999999999999999999999999999986544 578
Q ss_pred EEeeecchh----hhhhhhhhhhh
Q psy2749 163 VTQSHVLIF----DLLWLGIALTF 182 (217)
Q Consensus 163 ~ViR~g~~~----~~l~lg~iL~~ 182 (217)
.|+|+|... -++++|||+-.
T Consensus 223 ~ViR~G~r~~isI~diVVGDIv~l 246 (1034)
T KOG0204|consen 223 QVIRGGRRQQISIYDLVVGDIVQL 246 (1034)
T ss_pred EEEECCEEEEEEEeeeeeccEEEe
Confidence 999999864 38888887654
No 11
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=99.80 E-value=1.4e-19 Score=127.60 Aligned_cols=68 Identities=35% Similarity=0.556 Sum_probs=65.5
Q ss_pred cccCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2749 4 THAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILC 72 (217)
Q Consensus 4 ~~~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails 72 (217)
|+.++++++++|+ |+..+||+++||++|+++||+|++++++++++|++++++|.|||+++|+++|++|
T Consensus 2 ~~~~~~~v~~~l~-t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~f~~~~~~lL~~aailS 69 (69)
T PF00690_consen 2 HQLSVEEVLKRLN-TSSSQGLSSEEVEERRKKYGPNELPEPKKKSLWRIFLKQFKNPFIILLLIAAILS 69 (69)
T ss_dssp TTSSHHHHHHHHT-TBTSSBBTHHHHHHHHHHHSSSSTTTTTSSSHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHC-cCCCCCCCHHHHHHHHHhcccccccccccCcHHHHHHHHHHhHHHHHHHHHHHHC
Confidence 4459999999999 9999999999999999999999999999999999999999999999999999987
No 12
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=99.80 E-value=1.3e-19 Score=178.44 Aligned_cols=114 Identities=18% Similarity=0.268 Sum_probs=105.8
Q ss_pred CCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccch
Q psy2749 23 GLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLF 102 (217)
Q Consensus 23 GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~ 102 (217)
|||++||++|+++||+|++++ +++++|++|+++|++|+.++|++++++|++++
T Consensus 1 GLs~~ea~~r~~~~G~N~~~~-~~~~~~~~~~~~~~~~~~~lL~~aa~~s~~~~-------------------------- 53 (755)
T TIGR01647 1 GLTSAEAKKRLAKYGPNELPE-KKVSPLLKFLGFFWNPLSWVMEAAAIIAIALE-------------------------- 53 (755)
T ss_pred CcCHHHHHHHHHhcCCCCCCC-CCCCHHHHHHHHHhchHHHHHHHHHHHHHhhc--------------------------
Confidence 899999999999999999998 45678999999999999999999999999873
Q ss_pred hhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecch----hhhhhhhh
Q psy2749 103 RHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLI----FDLLWLGI 178 (217)
Q Consensus 103 ~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~----~~~l~lg~ 178 (217)
+|.++++|++++++++.++++||+++++.+++|+++.+++++|+|||.. .+++++||
T Consensus 54 -------------------~~~~~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~Rdg~~~~I~~~~Lv~GD 114 (755)
T TIGR01647 54 -------------------NWVDFVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVLRDGKWQEIPASELVPGD 114 (755)
T ss_pred -------------------chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCEEEEEEhhhCcCCC
Confidence 4899999999999999999999999999999999999999999999975 46999999
Q ss_pred hhhh
Q psy2749 179 ALTF 182 (217)
Q Consensus 179 iL~~ 182 (217)
++.+
T Consensus 115 iV~l 118 (755)
T TIGR01647 115 VVRL 118 (755)
T ss_pred EEEE
Confidence 9776
No 13
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.77 E-value=8.5e-19 Score=175.72 Aligned_cols=138 Identities=21% Similarity=0.252 Sum_probs=123.2
Q ss_pred cccccCHH--HHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Q psy2749 2 GLTHAKAK--EVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQ 79 (217)
Q Consensus 2 ~~~~~~~~--~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~ 79 (217)
.+|+.+.+ ++...+. ++..+||+++|+.+|++.||+|+++..+..++|.+|+.+|++|+.++|++++++|++++.+.
T Consensus 22 ~~~~~~~~~~~~~~~~~-~~~~~GLs~~e~~~r~~~~G~N~~~~~~~~~~~~~fl~~f~~~~~~iL~~~a~~s~~~~~~~ 100 (917)
T COG0474 22 TWHPLSVERNELLLELF-TSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDWV 100 (917)
T ss_pred cccccccchhhHHHhhc-CCcccCCCHHHHHHHHhhcCCccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34555677 8999998 88899999999999999999999999999999999999999999999999999999986322
Q ss_pred ccCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCch-hHHHHHHHHHHHHhhcccccccchHHHHHHHhccC
Q psy2749 80 ASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKL-YLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLV 158 (217)
Q Consensus 80 ~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~-~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~ 158 (217)
. . .++.+|+.++++|+.++++||+++++++++|+++.
T Consensus 101 ~------------------------------------------~~~~~~~I~~~i~~n~~~g~~qe~~a~~~l~~lk~~~ 138 (917)
T COG0474 101 D------------------------------------------AGVDAIVILLVVVINALLGFVQEYRAEKALEALKKMS 138 (917)
T ss_pred c------------------------------------------cCcceeeehHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1 1 56668899999999999999999999999999999
Q ss_pred CceeEEeeecch----hhhhhhhhhhhh
Q psy2749 159 PQFRVTQSHVLI----FDLLWLGIALTF 182 (217)
Q Consensus 159 ~~~~~ViR~g~~----~~~l~lg~iL~~ 182 (217)
+++++|+|||.. .+++++|||+.+
T Consensus 139 ~~~~~V~R~g~~~~i~a~eLVpGDiV~l 166 (917)
T COG0474 139 SPKAKVLRDGKFVEIPASELVPGDIVLL 166 (917)
T ss_pred cCceEEEeCCcEEEecHHHCCCCcEEEE
Confidence 999999999986 469999998766
No 14
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=99.71 E-value=3.7e-17 Score=113.20 Aligned_cols=62 Identities=32% Similarity=0.528 Sum_probs=58.5
Q ss_pred HcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy2749 14 RDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAY 76 (217)
Q Consensus 14 ~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~ 76 (217)
.++ ++++.|||++||++|+++||+|++++++++++|++++++|.|||+++|+++|++|++++
T Consensus 2 ~l~-~~~~~GLs~~~v~~r~~~~G~N~l~~~~~~s~~~~~l~~~~~p~~~iL~~~a~is~~~~ 63 (64)
T smart00831 2 RLQ-TSLESGLSSEEAARRLERYGPNELPPPKKRSPLLRFLRQFHNPLIYILLAAAVLSALLG 63 (64)
T ss_pred CCC-CCcccCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 467 88878999999999999999999999999999999999999999999999999999874
No 15
>KOG0205|consensus
Probab=99.64 E-value=2.9e-16 Score=149.21 Aligned_cols=136 Identities=16% Similarity=0.161 Sum_probs=117.8
Q ss_pred cCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCC
Q psy2749 6 AKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEE 85 (217)
Q Consensus 6 ~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~ 85 (217)
.+.+++.+.|. .+ ..|||++|+++|+++||+|++.++| ++.+.+|+.-|.+|+.++.-.+|++...+.-- ++
T Consensus 21 ~p~eeVfeeL~-~t-~~GLt~~E~~eRlk~fG~NkleEkk-en~~lKFl~Fm~~PlswVMEaAAimA~~Lang----~~- 92 (942)
T KOG0205|consen 21 IPIEEVFEELL-CT-REGLTSDEVEERLKIFGPNKLEEKK-ESKFLKFLGFMWNPLSWVMEAAAIMAIGLANG----GG- 92 (942)
T ss_pred CchhhhHHHHh-cC-CCCCchHHHHHHHHhhCchhhhhhh-hhHHHHHHHHHhchHHHHHHHHHHHHHHHhcC----CC-
Confidence 47899999998 55 4599999999999999999999755 67788999999999999999999998877411 11
Q ss_pred CCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe
Q psy2749 86 PADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ 165 (217)
Q Consensus 86 ~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi 165 (217)
...+|.+...|...+++|+.++|+||+++..+.++|++-..++++|+
T Consensus 93 ---------------------------------~~~DW~DF~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakVl 139 (942)
T KOG0205|consen 93 ---------------------------------RPPDWQDFVGICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKVL 139 (942)
T ss_pred ---------------------------------CCcchhhhhhhheeeeecceeeeeeccccchHHHHHHhccCcccEEe
Confidence 11369999999999999999999999999999999999999999999
Q ss_pred eecchh----hhhhhhhhhhh
Q psy2749 166 SHVLIF----DLLWLGIALTF 182 (217)
Q Consensus 166 R~g~~~----~~l~lg~iL~~ 182 (217)
|||+.. ..+|+||||-+
T Consensus 140 RDGkw~E~eAs~lVPGDIlsi 160 (942)
T KOG0205|consen 140 RDGKWSEQEASILVPGDILSI 160 (942)
T ss_pred ecCeeeeeeccccccCceeee
Confidence 999863 48899998754
No 16
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=99.54 E-value=1.6e-14 Score=146.92 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=98.0
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCccccccccccc
Q psy2749 21 TRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCW 100 (217)
Q Consensus 21 ~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~~ 100 (217)
.+|||++|+++|+++||+|+++.|+ +++|+++++++.+||.+++++++++.+.-
T Consensus 137 ~~GLs~~e~~~r~~~yG~N~i~~~~-~s~~~ll~~~~~~p~~i~~i~~~~l~~~~------------------------- 190 (1054)
T TIGR01657 137 SNGLTTGDIAQRKAKYGKNEIEIPV-PSFLELLKEEVLHPFYVFQVFSVILWLLD------------------------- 190 (1054)
T ss_pred ccCCCHHHHHHHHHhcCCCeeecCC-CCHHHHHHHHHhchHHHHHHHHHHHHHhh-------------------------
Confidence 5799999999999999999999865 79999999999999999998875554321
Q ss_pred chhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecch----hhhhhh
Q psy2749 101 LFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLI----FDLLWL 176 (217)
Q Consensus 101 ~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~----~~~l~l 176 (217)
+.|+++++|+++++++..++++|++|+.+.++.+.. .+..++|+|||.. .+++++
T Consensus 191 --------------------~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~-~~~~v~V~Rdg~~~~I~s~eLvp 249 (1054)
T TIGR01657 191 --------------------EYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH-KPQSVIVIRNGKWVTIASDELVP 249 (1054)
T ss_pred --------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeeEEEEECCEEEEEEcccCCC
Confidence 138999999999999999999999998887766654 3568999999976 369999
Q ss_pred hhhhhh
Q psy2749 177 GIALTF 182 (217)
Q Consensus 177 g~iL~~ 182 (217)
|||+.+
T Consensus 250 GDiv~l 255 (1054)
T TIGR01657 250 GDIVSI 255 (1054)
T ss_pred CCEEEE
Confidence 998766
No 17
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.19 E-value=2.1e-11 Score=122.81 Aligned_cols=95 Identities=12% Similarity=0.132 Sum_probs=82.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHH
Q psy2749 53 FCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAV 132 (217)
Q Consensus 53 ~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~v 132 (217)
++++|+||++++|+++|++|++++.+.+. + ...++|+++++|+++
T Consensus 1 ~~~~f~~~~~~iL~~aa~ls~~~~~~~~~----~-------------------------------~~~~~~~~~~~Il~v 45 (917)
T TIGR01116 1 VLEQFEDLLVRILLLAACVSFVLAWFEEG----E-------------------------------ETVTAFVEPFVILLI 45 (917)
T ss_pred ChHHHhCHHHHHHHHHHHHHHHHhccccc----c-------------------------------cccccHhHHHHHHHH
Confidence 47899999999999999999999755320 0 011369999999999
Q ss_pred HHHHhhcccccccchHHHHHHHhccCCceeEEeeecch----hhhhhhhhhhhh
Q psy2749 133 VIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLI----FDLLWLGIALTF 182 (217)
Q Consensus 133 v~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~----~~~l~lg~iL~~ 182 (217)
+++++.++++||+|+++.+++|+++.+++++|+|||.. .+++++||++.+
T Consensus 46 i~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~ViRdg~~~~I~~~~Lv~GDiv~l 99 (917)
T TIGR01116 46 LVANAIVGVWQERNAEKAIEALKEYESEHAKVLRDGRWSVIKAKDLVPGDIVEL 99 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEECCEEEEEEHHHCCCCCEEEE
Confidence 99999999999999999999999999999999999975 469999999876
No 18
>KOG0203|consensus
Probab=99.11 E-value=2e-11 Score=119.23 Aligned_cols=116 Identities=31% Similarity=0.367 Sum_probs=97.6
Q ss_pred cchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eec---------
Q psy2749 100 WLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHV--------- 168 (217)
Q Consensus 100 ~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g--------- 168 (217)
+.++|.+|++|+++||+|+.+.++..+.+ .-.+--++.+..-......++.+.++++.+-....+ ...
T Consensus 36 ~~~~H~~~~~eL~~r~~t~~~~Glt~~~A-~~~L~rdG~NaL~Ppk~t~~wikf~kq~f~~~~ill~~~a~l~~~~y~~~ 114 (1019)
T KOG0203|consen 36 SMDDHKLSVDELCERYGTSVSQGLTSQEA-AEKLARDGPNALTPPKTTPEWIKFLRQLFGGFSILLWIGAILCFVAYGIQ 114 (1019)
T ss_pred eeccccCCHHHHHHHhcCChhhcccHHHH-HhhhccCCCCCCCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Confidence 46789999999999999998877887777 677778999999999999999999998866432211 000
Q ss_pred ------chhhhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749 169 ------LIFDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR 216 (217)
Q Consensus 169 ------~~~~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~ 216 (217)
...+|+|+|+||..||+++++|+|+|+.|+++.|+||++|+|++|.|.
T Consensus 115 ~s~~~~~~~~nly~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~~~~Vi 168 (1019)
T KOG0203|consen 115 ASTEDDPSDDNLYLGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQQALVI 168 (1019)
T ss_pred cccCCCCCCcceEEEEEEEEEEEEEecCCCccchhhHHHHHHHhccchhhheee
Confidence 123699999999999999999999999999999999999999999874
No 19
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=98.61 E-value=2.1e-08 Score=102.52 Aligned_cols=115 Identities=14% Similarity=0.053 Sum_probs=95.3
Q ss_pred chhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecch--hhhhhh
Q psy2749 101 LFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLI--FDLLWL 176 (217)
Q Consensus 101 ~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~--~~~l~l 176 (217)
.+||.++.+++.++++|+...|+.+..+ -...-..|.+..-.+.+...+...++++.++...++ ....+ ..+...
T Consensus 5 ~~~~~~~~~~v~~~l~t~~~~GLs~~ea-~~rl~~~G~N~l~~~~~~s~~~~~l~q~~~~~~~iL~~aails~~~~~~~~ 83 (1053)
T TIGR01523 5 NAYFSDIADEAAEFIGTSIPEGLTHDEA-QHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAAAISFAMHDWIE 83 (1053)
T ss_pred CchhhCCHHHHHHHhCcCcccCCCHHHH-HHHHHHcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhHHH
Confidence 4689999999999999986556888776 788888999998777666677777888877766543 33333 247778
Q ss_pred hhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749 177 GIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR 216 (217)
Q Consensus 177 g~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~ 216 (217)
|++|++|+++|++++|+||+||+|+|+++++|.|++++|+
T Consensus 84 ~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~Vi 123 (1053)
T TIGR01523 84 GGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVI 123 (1053)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 9999999999999999999999999999999999998875
No 20
>KOG0208|consensus
Probab=98.57 E-value=1.1e-07 Score=94.60 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=91.3
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccc
Q psy2749 20 LTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCC 99 (217)
Q Consensus 20 ~~~GLt~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~ 99 (217)
..+||+..++.+|+..||+|.+.-+. +|.+.+++++..+||-+.-.+ |++++....
T Consensus 157 ~~~gL~~~~~~~r~~iyG~N~i~l~i-k~i~~iLv~EvL~PfYlFQ~f----Sv~lW~~d~------------------- 212 (1140)
T KOG0208|consen 157 VSNGLERQEIIDRRIIYGRNVISLPI-KSISQILVKEVLNPFYLFQAF----SVALWLADS------------------- 212 (1140)
T ss_pred ccCCccHHHHHhHHhhcCCceeeeec-ccHHHHHHHhccchHHHHHhH----Hhhhhhccc-------------------
Confidence 36899999999999999999999865 789999999999999876544 455553221
Q ss_pred cchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecchh----hhhh
Q psy2749 100 WLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLIF----DLLW 175 (217)
Q Consensus 100 ~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~~----~~l~ 175 (217)
. ++-+..|.++.+.+...+.|+.++.++-++.+-+. ...++|+|+|... +++|
T Consensus 213 ---------------------Y-~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~-~~~V~V~R~g~~~ti~S~eLV 269 (1140)
T KOG0208|consen 213 ---------------------Y-YYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKF-TCPVTVIRDGFWETVDSSELV 269 (1140)
T ss_pred ---------------------c-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEECCEEEEEeccccc
Confidence 1 34466778888899999999999988866555444 2478999999863 5999
Q ss_pred hhhhhhh
Q psy2749 176 LGIALTF 182 (217)
Q Consensus 176 lg~iL~~ 182 (217)
+||||.+
T Consensus 270 PGDil~i 276 (1140)
T KOG0208|consen 270 PGDILYI 276 (1140)
T ss_pred cccEEEE
Confidence 9999876
No 21
>KOG0202|consensus
Probab=98.47 E-value=3.9e-08 Score=96.62 Aligned_cols=113 Identities=19% Similarity=0.134 Sum_probs=93.3
Q ss_pred hhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecchh--hhhhhhh
Q psy2749 103 RHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLIF--DLLWLGI 178 (217)
Q Consensus 103 ~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~~--~~l~lg~ 178 (217)
.|..|.+|+...|.|+...++....+ .-.--..|.+.+--|....-+-.-|+|+.++-+.++ ....++ .+.-.+.
T Consensus 4 ~~~~~v~e~~~~f~t~~~~GLt~~ev-~~r~~~yG~Nel~~ee~~~~wk~vLeQF~n~Li~iLL~sA~ISfvl~~~~e~~ 82 (972)
T KOG0202|consen 4 AHAKSVSEVLAEFGTDLEEGLTSDEV-TRRRKKYGENELPAEEGESLWKLVLEQFDNPLILILLLSAAISFVLADFDEPF 82 (972)
T ss_pred hhcCcHHHHHHHhCcCcccCCCHHHH-HHHHHhcCCccCccccCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccce
Confidence 46678999999999998888888877 778888999998888888888888888877766653 333342 2334677
Q ss_pred hhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749 179 ALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR 216 (217)
Q Consensus 179 iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~ 216 (217)
+|.+++++|++++|||||+|||+||+++++.|++|+|.
T Consensus 83 vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~ 120 (972)
T KOG0202|consen 83 VITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVL 120 (972)
T ss_pred eeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEE
Confidence 88889999999999999999999999999999999873
No 22
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.29 E-value=1.5e-06 Score=85.38 Aligned_cols=97 Identities=15% Similarity=0.060 Sum_probs=73.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHH
Q psy2749 55 KQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVI 134 (217)
Q Consensus 55 ~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~ 134 (217)
.+|+||+.++|++++++|++++++.....++. ....+|..++++++.++
T Consensus 29 ~~~~~p~~~vl~~~a~ls~~~~~~~~~~~~~~-------------------------------~~~~~~~i~~~l~~~vl 77 (679)
T PRK01122 29 VQIRNPVMFVVEVGSILTTILTIAPLLFQSGG-------------------------------PAGFNLAITLWLWFTVL 77 (679)
T ss_pred HHhhChHHHHHHHHHHHHHHHHhhhhcccccc-------------------------------ccchHHHHHHHHHHHHH
Confidence 57899999999999999999875432100000 00123667777777777
Q ss_pred HHhhcccccccchHHHHHHHhccCCc-eeEEeeecc-h----hhhhhhhhhhhh
Q psy2749 135 VTGIFSYYQESKSSAIMDSFKNLVPQ-FRVTQSHVL-I----FDLLWLGIALTF 182 (217)
Q Consensus 135 i~~~i~~~qe~ka~k~~~~L~~~~~~-~~~ViR~g~-~----~~~l~lg~iL~~ 182 (217)
+...+..+||+|+++.+++|+++.+. .++|+|+|. . .++++.||++.+
T Consensus 78 ~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~vir~g~~~~~V~~~eL~~GDiV~v 131 (679)
T PRK01122 78 FANFAEALAEGRGKAQADSLRGAKKDTFARKLREPGAAEEVPATELRKGDIVLV 131 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCEEEEEEHHHcCCCCEEEE
Confidence 77788889999999999999999885 799999876 2 468999998765
No 23
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.26 E-value=1.3e-06 Score=85.74 Aligned_cols=94 Identities=9% Similarity=0.062 Sum_probs=73.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHH
Q psy2749 55 KQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVI 134 (217)
Q Consensus 55 ~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~ 134 (217)
.+++||+.++|++++++|++++.+....+ .....++.+++|+++++
T Consensus 28 ~~~~~p~~~il~~aa~ls~~~~~~~~~~~----------------------------------~~~~~~~~~~~i~~~l~ 73 (673)
T PRK14010 28 YMIKNPIMFVVEVGMLLALGLTIYPDLFH----------------------------------QESVSRLYVFSIFIILL 73 (673)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHHhhhcc----------------------------------cccccchhHHHHHHHHH
Confidence 46789999999999999999875421000 00012477888899999
Q ss_pred HHhhccccc----ccchHHHHHHHhccCCc-eeE-Eeeecch----hhhhhhhhhhhh
Q psy2749 135 VTGIFSYYQ----ESKSSAIMDSFKNLVPQ-FRV-TQSHVLI----FDLLWLGIALTF 182 (217)
Q Consensus 135 i~~~i~~~q----e~ka~k~~~~L~~~~~~-~~~-ViR~g~~----~~~l~lg~iL~~ 182 (217)
++++++.+| |+|+++++++|+++.++ +++ |+|||.. .++++.||++..
T Consensus 74 ~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~v~rdg~~~~I~a~eLv~GDiV~v 131 (673)
T PRK14010 74 LTLVFANFSEALAEGRGKAQANALRQTQTEMKARRIKQDGSYEMIDASDLKKGHIVRV 131 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEeCCEEEEEEHHHcCCCCEEEE
Confidence 999999999 68999999999999886 776 6799864 469999998765
No 24
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=98.07 E-value=2.7e-06 Score=86.92 Aligned_cols=117 Identities=32% Similarity=0.393 Sum_probs=93.7
Q ss_pred ccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecch------
Q psy2749 99 CWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLI------ 170 (217)
Q Consensus 99 ~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~------ 170 (217)
...++|.+|.+++..+++|+...|+.+.-+ -...-..|.+..-.+.+...+...++++.++...++ ....+
T Consensus 13 ~~~~~~~~~~~~~~~~l~t~~~~GLs~~e~-~~rl~~~G~N~l~~~~~~~~~~~~l~~~~~~~~~iL~~aa~l~~~~~~~ 91 (997)
T TIGR01106 13 VEMDDHKLSLDELERKYGTDLSKGLSAARA-AEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAILCFLAYGI 91 (997)
T ss_pred ccCCchhCCHHHHHHHhCcCcccCCCHHHH-HHHHHHhCCCCCCCCCCCCHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 345789999999999999987656888876 788888999988776666666677788777654332 11111
Q ss_pred ---------hhhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749 171 ---------FDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR 216 (217)
Q Consensus 171 ---------~~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~ 216 (217)
..+++.|+++++|+++|++++|+|++|+++.+++++++.|++++|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~Vi 146 (997)
T TIGR01106 92 QASTEEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVI 146 (997)
T ss_pred hhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE
Confidence 1367889999999999999999999999999999999999988764
No 25
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.00 E-value=1.2e-05 Score=78.93 Aligned_cols=96 Identities=20% Similarity=0.171 Sum_probs=68.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHH---HHHHH
Q psy2749 55 KQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLG---IVLTA 131 (217)
Q Consensus 55 ~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~---i~I~~ 131 (217)
.||+||++++|+++|++|+++++.....+.+ .....|+++ +++++
T Consensus 28 ~~~~~p~~~il~~~a~is~~l~~~~~~~~~~--------------------------------~~~~~~~~~~i~~~l~~ 75 (675)
T TIGR01497 28 AQWRNPVMFIVWVGSLLTTCITIAPASFGMP--------------------------------GNNLALFNAIITGILFI 75 (675)
T ss_pred HHhhChHHHHHHHHHHHHHHHHHhhhccccc--------------------------------cccccchHHHHHHHHHH
Confidence 4789999999999999999987542100000 000136654 34455
Q ss_pred HHHHHhhcccccccchHHHHHHHhccCCc-eeEEee-ecch----hhhhhhhhhhhh
Q psy2749 132 VVIVTGIFSYYQESKSSAIMDSFKNLVPQ-FRVTQS-HVLI----FDLLWLGIALTF 182 (217)
Q Consensus 132 vv~i~~~i~~~qe~ka~k~~~~L~~~~~~-~~~ViR-~g~~----~~~l~lg~iL~~ 182 (217)
.+++...+..++|+|+++.+++|+++.++ .++|+| +|.. .++++.||++..
T Consensus 76 ~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr~dg~~~~V~~~~L~~GDiV~V 132 (675)
T TIGR01497 76 TVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKLLRDDGAIDKVPADQLKKGDIVLV 132 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeCCEEEEEEHHHCCCCCEEEE
Confidence 55666667779999999999999999876 588986 7753 468999998765
No 26
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=97.93 E-value=5.1e-06 Score=84.10 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=89.8
Q ss_pred hhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecch--hhhhhhhh
Q psy2749 103 RHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLI--FDLLWLGI 178 (217)
Q Consensus 103 ~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~--~~~l~lg~ 178 (217)
.+.++.+++.++++++.. ++.+..+ -...-..|.+..-.+.+...+...++++.++...++ ....+ .++.+.|+
T Consensus 49 ~~~~~~~~v~~~l~~~~~-GLs~~ea-~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~lL~~aa~ls~~~~~~~~a~ 126 (902)
T PRK10517 49 AAVMPEEELWKTFDTHPE-GLNEAEV-ESAREQHGENELPAQKPLPWWVHLWVCYRNPFNILLTILGAISYATEDLFAAG 126 (902)
T ss_pred HHcCCHHHHHHHhCCCCC-CCCHHHH-HHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHccHHHHH
Confidence 455688999999998875 4888777 788888999998777666666667778877765543 23333 25778889
Q ss_pred hhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749 179 ALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR 216 (217)
Q Consensus 179 iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~ 216 (217)
+|++++++|++++|+||+||++.++++++|.|++++|.
T Consensus 127 ~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~Vi 164 (902)
T PRK10517 127 VIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVL 164 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 99999999999999999999999999999999998774
No 27
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=97.91 E-value=6.6e-06 Score=83.28 Aligned_cols=112 Identities=21% Similarity=0.191 Sum_probs=86.6
Q ss_pred hhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecchh---------
Q psy2749 103 RHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLIF--------- 171 (217)
Q Consensus 103 ~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~~--------- 171 (217)
.|+.|.+++...+.++.. ++.+..+ -......|.+..-.+.+...+...++++.++...++ ....+.
T Consensus 27 ~~~~~~~~v~~~l~~~~~-GLs~~ea-~~rl~~~G~N~l~~~~~~~~~~~~l~~f~~~~~~iL~~aa~ls~~~~~~~~~~ 104 (903)
T PRK15122 27 EAANSLEETLANLNTHRQ-GLTEEDA-AERLQRYGPNEVAHEKPPHALVQLLQAFNNPFIYVLMVLAAISFFTDYWLPLR 104 (903)
T ss_pred HHhCCHHHHHHHhCCCCC-CCCHHHH-HHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467788999999998854 4877776 778888899988766666566666777777665442 222221
Q ss_pred ----hhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749 172 ----DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR 216 (217)
Q Consensus 172 ----~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~ 216 (217)
.+...+++|++++++|++++|+||++++++++++++|+|.+++|.
T Consensus 105 ~~~~~~~~~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~ 153 (903)
T PRK15122 105 RGEETDLTGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVL 153 (903)
T ss_pred CCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEE
Confidence 145678899999999999999999999999999999999998764
No 28
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=97.86 E-value=8.5e-06 Score=82.17 Aligned_cols=114 Identities=18% Similarity=0.113 Sum_probs=90.1
Q ss_pred chhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecch--hhhhhh
Q psy2749 101 LFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLI--FDLLWL 176 (217)
Q Consensus 101 ~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~--~~~l~l 176 (217)
...|.++.+++..+++++.. ++.+..+ -...-..|.+..-.+.+.......++++.++...++ ....+ .++.+.
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~-GLs~~ev-~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~p~~~iL~~~a~ls~~~~~~~~ 90 (867)
T TIGR01524 13 LKESQMGKETLLRKLGVHET-GLTNVEV-TERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYILAMLMGVSYLTDDLEA 90 (867)
T ss_pred HHHHhCCHHHHHHHhCCCCC-CCCHHHH-HHHHHhcCCCcCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHH
Confidence 35677899999999998865 4877776 788888999988666555556667777777665443 22332 257788
Q ss_pred hhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749 177 GIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR 216 (217)
Q Consensus 177 g~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~ 216 (217)
+++|++++++|++++|+||+|++++++++++|+|.+++|.
T Consensus 91 ~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~ 130 (867)
T TIGR01524 91 TVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVL 130 (867)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeEEE
Confidence 9999999999999999999999999999999999988763
No 29
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=97.84 E-value=1e-05 Score=81.79 Aligned_cols=114 Identities=15% Similarity=0.117 Sum_probs=89.3
Q ss_pred hhhhhhHHHHHHhhhcccCCchh-HHHHHHHHHHHHhhcccccccchHHHHHHHhcc-CCceeEEe--eecch--hhhhh
Q psy2749 102 FRHAISLVKARAVLNTSKKGKLY-LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNL-VPQFRVTQ--SHVLI--FDLLW 175 (217)
Q Consensus 102 ~~h~~s~~~~~~~~~t~~~~~~~-~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~-~~~~~~Vi--R~g~~--~~~l~ 175 (217)
.||.+|.+++.+++.|+...|+. +..+ --..-..|.+.+-.+.+...+...++++ .++...++ ....+ ..+.+
T Consensus 3 ~~~~~~~~~v~~~l~t~~~~GLs~~~ev-~~r~~~~G~N~i~~~~~~s~~~~~l~~~~~~~~~~~L~~aa~ls~~~g~~~ 81 (884)
T TIGR01522 3 QYCELSVEETCSKLQTDLQNGLNSSQEA-SHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILLLIASAVISVFMGNID 81 (884)
T ss_pred chhhCCHHHHHHHhCcCcccCCCcHHHH-HHHHHhcCCCcCCCCCCCCHHHHHHHHHhhChHHHHHHHHHHHHHHHcchh
Confidence 57999999999999998765687 6655 6777789999987776666666677777 56655442 22222 23566
Q ss_pred hhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749 176 LGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR 216 (217)
Q Consensus 176 lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~ 216 (217)
.|.+++++++++++++|+||+++++.+++++++.|++++|.
T Consensus 82 ~~~~i~~~i~~~~~i~~~qe~~a~~~l~~L~~l~~~~~~Vi 122 (884)
T TIGR01522 82 DAVSITLAILIVVTVGFVQEYRSEKSLEALNKLVPPECHLI 122 (884)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE
Confidence 77888888999999999999999999999999999998763
No 30
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.70 E-value=5.1e-05 Score=72.64 Aligned_cols=61 Identities=11% Similarity=0.183 Sum_probs=55.3
Q ss_pred chhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecch----hhhhhhhhhhhh
Q psy2749 122 KLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLI----FDLLWLGIALTF 182 (217)
Q Consensus 122 ~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~----~~~l~lg~iL~~ 182 (217)
+|.++.+|+.+++++..++++|++|+.+.++.|.++.+++++|+|+|.. .++++.||++.+
T Consensus 17 ~~~~~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDiv~v 81 (536)
T TIGR01512 17 EYLEGALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVLRGGSLEEVAVEELKVGDVVVV 81 (536)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCEEEEEEHHHCCCCCEEEE
Confidence 3888999999999999999999999999999999999999999999975 469999998766
No 31
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=97.37 E-value=0.00025 Score=73.03 Aligned_cols=104 Identities=14% Similarity=0.008 Sum_probs=76.4
Q ss_pred cCCCCCCCCCCCCH---HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccchhhhhhHHHHH
Q psy2749 36 DGPNALTPPKQTPE---WIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKAR 112 (217)
Q Consensus 36 ~G~N~l~~~k~~s~---~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~~ 112 (217)
|..|.+...|-+.| ++.+++||..+.++.++++++++++.... +
T Consensus 1 ~~~N~i~tskY~~~~flp~~l~~qf~~~~N~yfl~i~ilq~ip~~s-~-------------------------------- 47 (1057)
T TIGR01652 1 FCSNKISTTKYTVLTFLPKNLFEQFKRFANLYFLVVALLQQVPILS-P-------------------------------- 47 (1057)
T ss_pred CCCCcccCccCcchhhhHHHHHHHHHHHhhHHHHHHHHHHcCCCcC-C--------------------------------
Confidence 56799988887666 68999999999999999999999874321 0
Q ss_pred HhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeee-cch----hhhhhhhhhhhh
Q psy2749 113 AVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSH-VLI----FDLLWLGIALTF 182 (217)
Q Consensus 113 ~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~-g~~----~~~l~lg~iL~~ 182 (217)
...+...+.+.++++++.+-.++++++..++-+.+ .+..++|+|+ |.. .+++++||++..
T Consensus 48 -------~~~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~~~---n~~~~~v~~~~~~~~~i~~~~l~~GDiv~l 112 (1057)
T TIGR01652 48 -------TYRGTSIVPLAFVLIVTAIKEAIEDIRRRRRDKEV---NNRLTEVLEGHGQFVEIPWKDLRVGDIVKV 112 (1057)
T ss_pred -------CCccHhHHhHHHHHHHHHHHHHHHHHHHHHhHHHH---hCcEEEEECCCCcEEEeeeecccCCCEEEE
Confidence 01122233344555588889999999998877654 3578999996 543 358888988766
No 32
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.26 E-value=8.9e-05 Score=75.31 Aligned_cols=115 Identities=20% Similarity=0.139 Sum_probs=86.2
Q ss_pred chhhhhhHH--HHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeec--ch--hhhh
Q psy2749 101 LFRHAISLV--KARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHV--LI--FDLL 174 (217)
Q Consensus 101 ~~~h~~s~~--~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g--~~--~~~l 174 (217)
..+|..+++ +....+.++...++.+..+ .-..-..+.+.+..+.+..-....++++.++...++-.. .+ ....
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~GLs~~e~-~~r~~~~G~N~~~~~~~~~~~~~fl~~f~~~~~~iL~~~a~~s~~~~~~ 99 (917)
T COG0474 21 ETWHPLSVERNELLLELFTSPTTGLSEEEV-KRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDW 99 (917)
T ss_pred ccccccccchhhHHHhhcCCcccCCCHHHH-HHHHhhcCCccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 356777777 8888887776655777544 666778899998767666777777788776665554222 11 1233
Q ss_pred ----hhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749 175 ----WLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR 216 (217)
Q Consensus 175 ----~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~ 216 (217)
+..+++.+++++|++++|+||++|++.++++++|.+.+++|.
T Consensus 100 ~~~~~~~~~I~~~i~~n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~ 145 (917)
T COG0474 100 VDAGVDAIVILLVVVINALLGFVQEYRAEKALEALKKMSSPKAKVL 145 (917)
T ss_pred cccCcceeeehHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEE
Confidence 556689999999999999999999999999999999988774
No 33
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.18 E-value=0.00054 Score=65.83 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeec-ch----hhhhhhhhhhhh
Q psy2749 123 LYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHV-LI----FDLLWLGIALTF 182 (217)
Q Consensus 123 ~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g-~~----~~~l~lg~iL~~ 182 (217)
|.++..|+.+++++..+.+++++|+.+.++.|.+..++.++|+|+| .. .++++.||++.+
T Consensus 18 ~~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~r~~g~~~~i~~~~l~~GDiv~v 82 (556)
T TIGR01525 18 VLEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVLQGDGSEEEVPVEELQVGDIVIV 82 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEE
Confidence 7888999999999999999999999999999999999999999996 43 469999998776
No 34
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.06 E-value=0.0011 Score=65.99 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=55.5
Q ss_pred CchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecch----hhhhhhhhhhhh
Q psy2749 121 GKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLI----FDLLWLGIALTF 182 (217)
Q Consensus 121 ~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~----~~~l~lg~iL~~ 182 (217)
+.|.++..++..+.+...+..++++|+.+.+++|.++.++.++|+|+|.. .+++..||++.+
T Consensus 204 ~~~~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~vir~g~~~~v~~~~l~~GDiv~v 269 (741)
T PRK11033 204 GATAEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPETATRLRDGEREEVAIADLRPGDVIEV 269 (741)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEECCEEEEEEHHHCCCCCEEEE
Confidence 45788888888999999999999999999999999999999999999975 469999998775
No 35
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=96.81 E-value=0.001 Score=67.67 Aligned_cols=46 Identities=11% Similarity=0.186 Sum_probs=42.4
Q ss_pred hhhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749 171 FDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR 216 (217)
Q Consensus 171 ~~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~ 216 (217)
..+.+.|.+|++|+++|+++++||++|+++.+++++++.|.+++|.
T Consensus 33 ~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~Vi 78 (917)
T TIGR01116 33 VTAFVEPFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVL 78 (917)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 3477899999999999999999999999999999999999988764
No 36
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=96.76 E-value=0.00095 Score=56.26 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhcccccccchHHHHHHHhccCCce-eEEeeecch----hhhhhhhhhhhh
Q psy2749 128 VLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQF-RVTQSHVLI----FDLLWLGIALTF 182 (217)
Q Consensus 128 ~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~-~~ViR~g~~----~~~l~lg~iL~~ 182 (217)
+|+++++++..+++++++|+.+..+.++++.++. ++|+|+|.. .+++++||++.+
T Consensus 1 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~~i~~~~L~~GDiI~l 60 (230)
T PF00122_consen 1 VILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRDGRWQKIPSSELVPGDIIIL 60 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEETTEEEEEEGGGT-TTSEEEE
T ss_pred CEEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEeccccccchHhhccceeeeec
Confidence 3577888999999999999999999999988887 999999875 469999999876
No 37
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=96.31 E-value=0.0015 Score=65.11 Aligned_cols=68 Identities=7% Similarity=0.095 Sum_probs=50.3
Q ss_pred HHHHHHhccCCceeEEe--eecch--hhhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749 149 AIMDSFKNLVPQFRVTQ--SHVLI--FDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR 216 (217)
Q Consensus 149 k~~~~L~~~~~~~~~Vi--R~g~~--~~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~ 216 (217)
.+...++++.++...++ ....+ ..+.+.|.++++++++|+.++|+||+++++.++++++++|++++|.
T Consensus 26 ~~~~~~~~~~~~~~~lL~~aa~~s~~~~~~~~~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~ 97 (755)
T TIGR01647 26 PLLKFLGFFWNPLSWVMEAAAIIAIALENWVDFVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVL 97 (755)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhhcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 34445566655554332 12222 1356678899999999999999999999999999999999998873
No 38
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=96.11 E-value=0.0048 Score=63.01 Aligned_cols=108 Identities=12% Similarity=0.003 Sum_probs=71.7
Q ss_pred hHHHHHHhhhcccCCchh--HHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEe--eecch------------
Q psy2749 107 SLVKARAVLNTSKKGKLY--LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQ--SHVLI------------ 170 (217)
Q Consensus 107 s~~~~~~~~~t~~~~~~~--~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~Vi--R~g~~------------ 170 (217)
++++++.+++|+...|+. +..+ -...-..|.+.+-+..+..-....++++.++...++ ..+.+
T Consensus 43 ~~~~~~~~l~t~~~~GLs~~~~ev-~~r~~~yG~N~l~~~~~~s~~~~~~~~f~~~~~~~l~~~ails~~~~~~~~~~~~ 121 (941)
T TIGR01517 43 GAEGIATKLKTDLNEGVRLSSSTL-ERREKVYGKNELPEKPPKSFLQIVWAALSDQTLILLSVAAVVSLVLGLPEPGEGK 121 (941)
T ss_pred CHHHHHHHhCcCcccCCCCCHHHH-HHHHHHhCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhccccccc
Confidence 456677777777554576 5555 566667777776655554434444555544432221 11111
Q ss_pred ---hhhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhc-CCCCCCC
Q psy2749 171 ---FDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNM-VPQVSPG 215 (217)
Q Consensus 171 ---~~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m-~p~~~~~ 215 (217)
..+.+.|.+++++++++.+++++|++++++.++.++++ .+.+++|
T Consensus 122 ~~~~~~~~~~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~V 170 (941)
T TIGR01517 122 ADTETGWIEGVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAV 170 (941)
T ss_pred CccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEE
Confidence 12677889999999999999999999999999999875 4666655
No 39
>KOG0209|consensus
Probab=93.52 E-value=0.18 Score=50.83 Aligned_cols=122 Identities=11% Similarity=0.063 Sum_probs=76.5
Q ss_pred HHHHHHHcCCCCCCCCCCH-HHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCC
Q psy2749 8 AKEVLERDGPNALTRGLTH-AKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEP 86 (217)
Q Consensus 8 ~~~l~~~l~~t~~~~GLt~-~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~ 86 (217)
.++.+..+. . .+|+.. ++++.-.++||.|...-+. ++|-.+|.+....||...-.++.. ++...+
T Consensus 150 ~~~~~g~~~-k--~~G~~~~~~i~~a~~~~G~N~fdi~v-PtF~eLFkE~A~aPfFVFQVFcvg----LWCLDe------ 215 (1160)
T KOG0209|consen 150 TDEPFGYFQ-K--STGHEEESEIKLAKHKYGKNKFDIVV-PTFSELFKEHAVAPFFVFQVFCVG----LWCLDE------ 215 (1160)
T ss_pred cCCcchhhh-h--ccCcchHHHHHHHHHHhcCCccccCC-ccHHHHHHHhccCceeeHhHHhHH----HHHhHH------
Confidence 344444444 2 367773 4445555569999998664 569999999999998877666543 432211
Q ss_pred CCCcccccccccccchhhhhhHHHHHHhhhcccCCchhHHHHHHHHHHH-HhhcccccccchHHHHHHHhccCCc--eeE
Q psy2749 87 ADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIV-TGIFSYYQESKSSAIMDSFKNLVPQ--FRV 163 (217)
Q Consensus 87 ~~~n~~~~~~~~~~~~~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i-~~~i~~~qe~ka~k~~~~L~~~~~~--~~~ 163 (217)
-||-+..-+.|++. -+.+ .+| .-+.+..++.|-.. .+.
T Consensus 216 -----------------------------------yWYySlFtLfMli~fE~tl-V~Q---rm~~lse~R~Mg~kpy~I~ 256 (1160)
T KOG0209|consen 216 -----------------------------------YWYYSLFTLFMLIAFEATL-VKQ---RMRTLSEFRTMGNKPYTIN 256 (1160)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHhcCCCceEEE
Confidence 16666554444433 2222 223 34567788888653 678
Q ss_pred Eeeecch----hhhhhhhhhhhh
Q psy2749 164 TQSHVLI----FDLLWLGIALTF 182 (217)
Q Consensus 164 ViR~g~~----~~~l~lg~iL~~ 182 (217)
|.|+++. .+++++||+.-+
T Consensus 257 v~R~kKW~~l~seeLlPgDvVSI 279 (1160)
T KOG0209|consen 257 VYRNKKWVKLMSEELLPGDVVSI 279 (1160)
T ss_pred EEecCcceeccccccCCCceEEe
Confidence 8999886 368999997544
No 40
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=92.04 E-value=0.45 Score=46.06 Aligned_cols=60 Identities=10% Similarity=0.159 Sum_probs=44.8
Q ss_pred hhHHHHH-HHHHHHHhhcccccccchHHHHHHHhccCCceeEEeee-cc----hhhhhhhhhhhhh
Q psy2749 123 LYLGIVL-TAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSH-VL----IFDLLWLGIALTF 182 (217)
Q Consensus 123 ~~~~i~I-~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~-g~----~~~~l~lg~iL~~ 182 (217)
|+++.++ +..+.+.-.+..+.++|+.+.+++|.++.+..++|+|+ |. ..+++..||++..
T Consensus 53 ~~~~~~~i~~~~~~g~~le~~~~~~a~~~~~~L~~~~p~~a~~~~~~~~~~~v~~~~l~~GDii~v 118 (562)
T TIGR01511 53 FFDASAMLITFILLGRWLEMLAKGRASDALSKLAKLQPSTATLLTKDGSIEEVPVALLQPGDIVKV 118 (562)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEE
Confidence 5665554 33444444677778889999999999999999999985 43 2468999998876
No 41
>KOG0205|consensus
Probab=92.00 E-value=0.082 Score=52.03 Aligned_cols=109 Identities=13% Similarity=0.049 Sum_probs=82.8
Q ss_pred hhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEE----------eeecch-hh
Q psy2749 104 HAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVT----------QSHVLI-FD 172 (217)
Q Consensus 104 h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~V----------iR~g~~-~~ 172 (217)
-+++.|++.+.+-.+..| +....+ --+..+.+.+.. .|.+..+.++.|-=|.+|-..| +|+|.- ..
T Consensus 19 ~~~p~eeVfeeL~~t~~G-Lt~~E~-~eRlk~fG~Nkl-eEkken~~lKFl~Fm~~PlswVMEaAAimA~~Lang~~~~~ 95 (942)
T KOG0205|consen 19 EAIPIEEVFEELLCTREG-LTSDEV-EERLKIFGPNKL-EEKKESKFLKFLGFMWNPLSWVMEAAAIMAIGLANGGGRPP 95 (942)
T ss_pred ccCchhhhHHHHhcCCCC-CchHHH-HHHHHhhCchhh-hhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCCCCc
Confidence 356778888888887764 887777 788888999887 5888888888888887775544 343332 12
Q ss_pred hhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCC
Q psy2749 173 LLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPG 215 (217)
Q Consensus 173 ~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~ 215 (217)
+.+.-..|....++|++++|+||+.|..+.++++.=+..+++|
T Consensus 96 DW~DF~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakV 138 (942)
T KOG0205|consen 96 DWQDFVGICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKV 138 (942)
T ss_pred chhhhhhhheeeeecceeeeeeccccchHHHHHHhccCcccEE
Confidence 4444445556678899999999999999999999888888776
No 42
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=91.74 E-value=0.15 Score=35.28 Aligned_cols=58 Identities=22% Similarity=0.072 Sum_probs=47.2
Q ss_pred hhhhhHHHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCce
Q psy2749 103 RHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQF 161 (217)
Q Consensus 103 ~h~~s~~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~ 161 (217)
||.+|.++++.+++|+...|+.+..+ ....-..|.+.+-.+.+..-....++++.++.
T Consensus 1 w~~~~~~~v~~~l~t~~~~GLs~~ev-~~r~~~~G~N~l~~~~~~s~~~~~~~~f~~~~ 58 (69)
T PF00690_consen 1 WHQLSVEEVLKRLNTSSSQGLSSEEV-EERRKKYGPNELPEPKKKSLWRIFLKQFKNPF 58 (69)
T ss_dssp -TTSSHHHHHHHHTTBTSSBBTHHHH-HHHHHHHSSSSTTTTTSSSHHHHHHHHTTSHH
T ss_pred CCCCCHHHHHHHHCcCCCCCCCHHHH-HHHHHhcccccccccccCcHHHHHHHHHHhHH
Confidence 68899999999999887777988877 78888999999877777777777777775544
No 43
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=91.06 E-value=0.14 Score=50.83 Aligned_cols=42 Identities=7% Similarity=0.173 Sum_probs=36.5
Q ss_pred hhhhhhhhhhhhhhhchhhhhh----hhhHHHHHHHHhhcCCC-CCC
Q psy2749 173 LLWLGIALTFVNVITGLFSYYQ----ENKSSRIMESFKNMVPQ-VSP 214 (217)
Q Consensus 173 ~l~lg~iL~~Vv~~~~~~~~~Q----~~~ae~~m~~~~~m~p~-~~~ 214 (217)
..+.+.++++++++|.+|++|| |+|+++.+++++++.|+ +++
T Consensus 61 ~~~~~~~i~~~l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~ 107 (673)
T PRK14010 61 SRLYVFSIFIILLLTLVFANFSEALAEGRGKAQANALRQTQTEMKAR 107 (673)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence 4567888899999999999999 68999999999999997 564
No 44
>PRK10671 copA copper exporting ATPase; Provisional
Probab=90.14 E-value=0.76 Score=46.49 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=46.3
Q ss_pred hhH-HHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecch----hhhhhhhhhhhh
Q psy2749 123 LYL-GIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLI----FDLLWLGIALTF 182 (217)
Q Consensus 123 ~~~-~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~----~~~l~lg~iL~~ 182 (217)
|++ +..++..+.+.-.+..+.+.|+.+.+++|.++.+..++|+|+|.. .+++..||++.+
T Consensus 285 ~~~~~~~i~~~~~~g~~le~~~~~~~~~~~~~L~~l~p~~a~~~~~~~~~~v~~~~l~~GD~v~v 349 (834)
T PRK10671 285 YYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTDEGEKSVPLADVQPGMLLRL 349 (834)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeCCcEEEEEHHHcCCCCEEEE
Confidence 445 445455555666677777788889999999999999999998864 468999998776
No 45
>PLN03190 aminophospholipid translocase; Provisional
Probab=89.22 E-value=0.69 Score=48.73 Aligned_cols=105 Identities=11% Similarity=0.053 Sum_probs=72.9
Q ss_pred hcCCCCCCCCCCCC--HH-HHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccchhhhhhHHHH
Q psy2749 35 RDGPNALTPPKQTP--EW-IKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKA 111 (217)
Q Consensus 35 ~~G~N~l~~~k~~s--~~-~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~h~~s~~~~ 111 (217)
+|..|.+...|-+- |+ +.+++||.-+.++-.++.+++.++-.+. +
T Consensus 86 ~f~~N~i~TsKYt~~tFlP~~L~eQF~r~aN~YFL~I~ilq~ip~~s-~------------------------------- 133 (1178)
T PLN03190 86 EFAGNSIRTAKYSVFSFLPRNLFEQFHRVAYIYFLVIAVLNQLPQLA-V------------------------------- 133 (1178)
T ss_pred cCCCCeeeccccccHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCcc-c-------------------------------
Confidence 57888888766542 22 5667999999999999999988653211 0
Q ss_pred HHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecch----hhhhhhhhhhhh
Q psy2749 112 RAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLI----FDLLWLGIALTF 182 (217)
Q Consensus 112 ~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~----~~~l~lg~iL~~ 182 (217)
.+.+...+-+.++++++.+-..+++++..+.-+... +..++|+|+|.. .+++.+||++.+
T Consensus 134 --------~~~~t~~~PL~~vl~v~~ike~~Ed~~r~k~d~~~N---~~~~~v~~~~~~~~i~~~~i~vGDiv~v 197 (1178)
T PLN03190 134 --------FGRGASILPLAFVLLVTAVKDAYEDWRRHRSDRIEN---NRLAWVLVDDQFQEKKWKDIRVGEIIKI 197 (1178)
T ss_pred --------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc---CcEEEEEECCeEEEEeHHHCCCCCEEEE
Confidence 012344445566666777777888888877766554 468999998864 358889988766
No 46
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=88.93 E-value=0.13 Score=48.75 Aligned_cols=52 Identities=12% Similarity=0.085 Sum_probs=43.5
Q ss_pred HHHHHHhhcccccccchHHHHHHHhc--cCCceeEEeeecc---hhhhhhhhhhhhh
Q psy2749 131 AVVIVTGIFSYYQESKSSAIMDSFKN--LVPQFRVTQSHVL---IFDLLWLGIALTF 182 (217)
Q Consensus 131 ~vv~i~~~i~~~qe~ka~k~~~~L~~--~~~~~~~ViR~g~---~~~~l~lg~iL~~ 182 (217)
.+++++..+..++++++++.++.|++ ..+..++|+|+|. +.+++.+||++.+
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~g~~~V~~~~l~~GDiv~v 60 (499)
T TIGR01494 4 ILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVLRNGWKEIPASDLVPGDIVLV 60 (499)
T ss_pred EhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEECCeEEEEHHHCCCCCEEEE
Confidence 45667788889999999999999998 7778999999982 2469999998776
No 47
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=87.58 E-value=0.34 Score=46.53 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=37.8
Q ss_pred hhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCCC
Q psy2749 174 LWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPGR 216 (217)
Q Consensus 174 l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~~ 216 (217)
.+.+.+++++++++..++++|++|+++.+++++++.|+++.|.
T Consensus 18 ~~~~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~ 60 (536)
T TIGR01512 18 YLEGALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVL 60 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 3566777888899999999999999999999999999988764
No 48
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=86.30 E-value=0.45 Score=47.26 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=38.1
Q ss_pred hhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCC-CCCC
Q psy2749 172 DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ-VSPG 215 (217)
Q Consensus 172 ~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~-~~~~ 215 (217)
...+.+.+|++.+++..++.++|++|+++.+++++++.|+ .++|
T Consensus 64 ~~~~i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~v 108 (679)
T PRK01122 64 FNLAITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARK 108 (679)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 4777888888888888888899999999999999999996 4655
No 49
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=73.65 E-value=2.2 Score=42.49 Aligned_cols=43 Identities=9% Similarity=-0.006 Sum_probs=34.0
Q ss_pred hhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCC-CCC
Q psy2749 173 LLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQV-SPG 215 (217)
Q Consensus 173 ~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~-~~~ 215 (217)
+...+.+||+.+++.-.+..+|++|+++.+++++++.|+. +++
T Consensus 66 ~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~v 109 (675)
T TIGR01497 66 NAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKL 109 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEE
Confidence 3444566677677777777899999999999999999985 654
No 50
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=72.14 E-value=13 Score=37.29 Aligned_cols=59 Identities=7% Similarity=0.068 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEee-ecc----hhhhhhhhhhhhh
Q psy2749 124 YLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQS-HVL----IFDLLWLGIALTF 182 (217)
Q Consensus 124 ~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR-~g~----~~~~l~lg~iL~~ 182 (217)
-++..|+..+.+.-.+.-+-..|+.+++++|.++.+.++++++ ||. ..+++-.||+++.
T Consensus 175 ~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~~~~~~~~~~v~v~~v~~GD~v~V 238 (713)
T COG2217 175 EEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATVVRGDGEEEEVPVEEVQVGDIVLV 238 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEecCCcEEEEEHHHCCCCCEEEE
Confidence 3445555555566667777777888888899999999998876 442 1358888887654
No 51
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=71.23 E-value=3.5 Score=24.05 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=13.5
Q ss_pred CCCCCHHHHHHHHHh
Q psy2749 21 TRGLTHAKAKEVLER 35 (217)
Q Consensus 21 ~~GLt~~e~~~r~~~ 35 (217)
++|||.+|+++|++.
T Consensus 13 eh~ls~ee~~~RL~~ 27 (28)
T PF12368_consen 13 EHGLSEEEVAERLAA 27 (28)
T ss_pred hcCCCHHHHHHHHHc
Confidence 689999999999975
No 52
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=69.44 E-value=2.8 Score=40.43 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=35.6
Q ss_pred hhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCC
Q psy2749 176 LGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPG 215 (217)
Q Consensus 176 lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~ 215 (217)
.+.+++++++++..+.++|++|+.+.++.+.++.|+.+.+
T Consensus 20 ~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v 59 (556)
T TIGR01525 20 EGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARV 59 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 3568888999999999999999999999999999987655
No 53
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=65.93 E-value=57 Score=25.60 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=27.6
Q ss_pred CCC-CHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy2749 22 RGL-THAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAY 76 (217)
Q Consensus 22 ~GL-t~~e~~~r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~ 76 (217)
+|+ |++++++-++.|+.. |.+.+ ++....-.+-.+++.+|+++|+..
T Consensus 7 ~GlI~~~q~~~i~~~~~~~----~~~~~----~~~~~l~~lGall~~~gii~fvA~ 54 (145)
T PF09925_consen 7 QGLITPEQAEAILAFYGER----PSRSS----WLARILLYLGALLLGLGIILFVAA 54 (145)
T ss_pred CCCCCHHHHHHHHHHhhcc----ccchh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454 556667777777722 22223 333344455677788888888765
No 54
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=63.73 E-value=50 Score=26.92 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=18.8
Q ss_pred CHHHHHHHcCCCCCCCCCCHHHHHHHHHh
Q psy2749 7 KAKEVLERDGPNALTRGLTHAKAKEVLER 35 (217)
Q Consensus 7 ~~~~l~~~l~~t~~~~GLt~~e~~~r~~~ 35 (217)
..+++.+++. ...++.+|+.+|+++
T Consensus 69 ~v~~l~~~~~----~~~~~~~ea~~~L~~ 93 (193)
T PF06738_consen 69 AVNRLSRRIV----AGQLSLEEAIERLDE 93 (193)
T ss_pred HHHHHHHHHh----cCCCCHHHHHHHHHH
Confidence 3455666655 468999999999987
No 55
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=56.39 E-value=6.7 Score=39.37 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=35.7
Q ss_pred hhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCC
Q psy2749 175 WLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPG 215 (217)
Q Consensus 175 ~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~ 215 (217)
.-+..+++++.++..+.++|+.|+.+.+++++++.|+++.+
T Consensus 207 ~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~v 247 (741)
T PRK11033 207 AEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPETATR 247 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 33567777888999999999999999999999999998765
No 56
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=49.70 E-value=9.9 Score=39.71 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=32.4
Q ss_pred hhhhhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCC
Q psy2749 172 DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPG 215 (217)
Q Consensus 172 ~~l~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~ 215 (217)
+..+.+.+++++++++++++++|++|+.+.+..+.. .|..+.|
T Consensus 191 ~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~-~~~~v~V 233 (1054)
T TIGR01657 191 EYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH-KPQSVIV 233 (1054)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeeEEE
Confidence 356788899999999999999999998776666443 2444443
No 57
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=45.50 E-value=45 Score=22.37 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2749 45 KQTPEWIKFCKQLFGGFALLLWIGAILCFI 74 (217)
Q Consensus 45 k~~s~~~~~~~~~~d~~~~iL~~~ails~~ 74 (217)
+++|||-.+++...+-...+++..|++++.
T Consensus 18 R~NsF~fViik~vismimylilGi~L~yis 47 (54)
T PF04835_consen 18 RPNSFWFVIIKSVISMIMYLILGIALIYIS 47 (54)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 568999999999998777777777766543
No 58
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=44.64 E-value=87 Score=22.23 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhc
Q psy2749 58 FGGFALLLWIGAILCFIAYTIQA 80 (217)
Q Consensus 58 ~d~~~~iL~~~ails~~~~~~~~ 80 (217)
...+..+|.+++++||+.+++.+
T Consensus 10 e~l~~~il~~~~iisfi~Gy~~q 32 (76)
T PF06645_consen 10 EKLMQYILIISAIISFIVGYITQ 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999988764
No 59
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=42.58 E-value=24 Score=26.90 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=27.6
Q ss_pred hhhhhhhhhhhhhchhhhhhhhhHHHHHHHHhh
Q psy2749 175 WLGIALTFVNVITGLFSYYQENKSSRIMESFKN 207 (217)
Q Consensus 175 ~lg~iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~ 207 (217)
++.+++.+.-+++.+++|+|...=.+.+..+++
T Consensus 3 ~lii~~~~~~~lQ~~l~~~Qik~f~~~~~~l~~ 35 (109)
T PF06923_consen 3 ILIILLVIAWLLQILLGWFQIKNFNKAYKELRK 35 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777889999999999999998888873
No 60
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=41.55 E-value=16 Score=25.53 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=23.5
Q ss_pred HhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHH
Q psy2749 34 ERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAI 70 (217)
Q Consensus 34 ~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ai 70 (217)
+.|+.|...-+.-+|||..+++.+.=.++++.++++.
T Consensus 8 ~q~~~~q~~y~~lkPWwdvf~~YL~~~mlmi~v~~~~ 44 (65)
T PF12534_consen 8 QQYSENQPCYRILKPWWDVFFDYLVLLMLMIFVFGGT 44 (65)
T ss_pred HHHHhhHHHHHHHccHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455565555566889988888776555555555443
No 61
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=40.32 E-value=28 Score=26.82 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=26.9
Q ss_pred cccCHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCCCCC
Q psy2749 4 THAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTP 43 (217)
Q Consensus 4 ~~~~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~G~N~l~~ 43 (217)
|..+..-+.+.+. .|++.+++.+.+++|-.|.+|+
T Consensus 40 yrlT~~Sl~~A~~-----~G~~~e~i~~~L~~~S~~~lP~ 74 (129)
T PF13625_consen 40 YRLTPASLWRAAS-----AGLTAEEIIEFLERYSKNPLPQ 74 (129)
T ss_pred EEECHHHHHHHHH-----cCCCHHHHHHHHHHHcCCCCCH
Confidence 4445555555544 6999999999999999998875
No 62
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=39.08 E-value=1.1e+02 Score=24.06 Aligned_cols=47 Identities=17% Similarity=0.089 Sum_probs=30.9
Q ss_pred CCCCCHHHHHH-HHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHH
Q psy2749 21 TRGLTHAKAKE-VLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAI 70 (217)
Q Consensus 21 ~~GLt~~e~~~-r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ai 70 (217)
..|-|++|+.+ -.++||.=.+-.|+-++.-..+|- .|++++++.+++
T Consensus 71 ~~G~Sd~eI~~~~v~RYG~~Vly~Pp~~~~t~~LW~---~P~lll~~G~~~ 118 (126)
T TIGR03147 71 NEGKSNQQIIDFMTARFGDFVLYNPPFKWQTLLLWL---LPVLLLLLAFVL 118 (126)
T ss_pred HcCCCHHHHHHHHHHhcCCeEEecCCCCcchHHHHH---HHHHHHHHHHHH
Confidence 47999999854 677999988876655544444442 366666554444
No 63
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=39.00 E-value=71 Score=30.39 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHhcCCC
Q psy2749 22 RGLTHAKAKEVLERDGPN 39 (217)
Q Consensus 22 ~GLt~~e~~~r~~~~G~N 39 (217)
.|++++|+++.+++-|.=
T Consensus 364 ~g~~p~diAe~Lkk~g~~ 381 (462)
T PRK08568 364 TGLDPKTQARQLQNSGMQ 381 (462)
T ss_pred hCCCHHHHHHHHHHcCCc
Confidence 389999999999998854
No 64
>KOG0206|consensus
Probab=35.21 E-value=19 Score=38.07 Aligned_cols=105 Identities=15% Similarity=0.024 Sum_probs=67.2
Q ss_pred HHHhcCCCCCCCCCCC--CHH-HHHHHHHhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccchhhhhhH
Q psy2749 32 VLERDGPNALTPPKQT--PEW-IKFCKQLFGGFALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISL 108 (217)
Q Consensus 32 r~~~~G~N~l~~~k~~--s~~-~~~~~~~~d~~~~iL~~~ails~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~h~~s~ 108 (217)
+...|-.|.+..-|-+ +|+ +-+++||..+-++-.++.++++++- +. +.
T Consensus 28 ~~~~~~~N~i~TtKYt~~tFlPk~l~eQf~r~aN~yFl~~~il~~ip-~~-~~--------------------------- 78 (1151)
T KOG0206|consen 28 PQRKYCDNRISTTKYTLFTFLPKNLFEQFHRVANLYFLFIAILQFIP-LS-PF--------------------------- 78 (1151)
T ss_pred hhccccCCeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHcCc-cc-cc---------------------------
Confidence 5558999999876654 232 6678999999999999999998764 11 11
Q ss_pred HHHHHhhhcccCCchhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecchh-----hhhhhhhhh
Q psy2749 109 VKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLIF-----DLLWLGIAL 180 (217)
Q Consensus 109 ~~~~~~~~t~~~~~~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~~-----~~l~lg~iL 180 (217)
+.+...+-+++++.++.+=..++++|..+.=..+. +.++.|+|++... .++.+||++
T Consensus 79 ------------~~~~~~~pl~~vl~~t~iKd~~eD~rR~~~D~~iN---~~~~~v~~~~~~~~~~~wk~~~vGd~v 140 (1151)
T KOG0206|consen 79 ------------NPYTTLVPLLFVLGITAIKDAIEDYRRHKQDKEVN---NRKVEVLRGDGCFVEKKWKDVRVGDIV 140 (1151)
T ss_pred ------------CccceeeceeeeehHHHHHHHHhhhhhhhccHHhh---cceeEEecCCceeeeeccceeeeeeEE
Confidence 12444444455666666666778877666444444 4578888754321 255555543
No 65
>PRK10352 nickel transporter permease NikB; Provisional
Probab=34.21 E-value=3.4e+02 Score=24.22 Aligned_cols=41 Identities=15% Similarity=0.022 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHhcCCCC-------------------CCCCCCCCHHHHHHHHHhhhHHH
Q psy2749 23 GLTHAKAKEVLERDGPNA-------------------LTPPKQTPEWIKFCKQLFGGFAL 63 (217)
Q Consensus 23 GLt~~e~~~r~~~~G~N~-------------------l~~~k~~s~~~~~~~~~~d~~~~ 63 (217)
+.|++++++.+++||-|+ .+-...++.+..+++.+..-+.+
T Consensus 45 ~~~~e~~~~~~~~~Gld~p~~~qy~~~l~~~~~gd~G~S~~~g~~V~~~i~~~l~~Tl~L 104 (314)
T PRK10352 45 PPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFATQRPVLDDLLNFLPATLEL 104 (314)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCCCccCCCCCcHHHHHHHHHHHHHHH
Confidence 478899999999999986 22223467777777777654433
No 66
>PRK10914 dipeptide transporter permease DppB; Provisional
Probab=33.74 E-value=3.6e+02 Score=24.33 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHhcCCCCCCC-------------------CCCCCHHHHHHHHHhhhH
Q psy2749 23 GLTHAKAKEVLERDGPNALTP-------------------PKQTPEWIKFCKQLFGGF 61 (217)
Q Consensus 23 GLt~~e~~~r~~~~G~N~l~~-------------------~k~~s~~~~~~~~~~d~~ 61 (217)
+.|+++.++-+++||-|+--. ..+++-+..+.+.+..-+
T Consensus 43 ~~~~e~~~~~~~~~GLd~p~~~qy~~~l~~~~~gd~G~S~~~~~pV~~~i~~~lp~Tl 100 (339)
T PRK10914 43 GISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATL 100 (339)
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCCcCcCcCCCcHHHHHHHHhHHHH
Confidence 578999999999999985221 123566677777765433
No 67
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=33.31 E-value=2.6e+02 Score=22.57 Aligned_cols=14 Identities=21% Similarity=0.219 Sum_probs=7.8
Q ss_pred HHHHHHhcCCCCCC
Q psy2749 29 AKEVLERDGPNALT 42 (217)
Q Consensus 29 ~~~r~~~~G~N~l~ 42 (217)
|++-++.|+.+.-.
T Consensus 57 A~~i~~~~~i~~~~ 70 (181)
T PF08006_consen 57 AREILAEYSIKEEE 70 (181)
T ss_pred HHHHHHhhhhhhhh
Confidence 34555666655554
No 68
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=31.18 E-value=1.9e+02 Score=22.70 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=28.0
Q ss_pred CCCCCHHHHHH-HHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHH
Q psy2749 21 TRGLTHAKAKE-VLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWI 67 (217)
Q Consensus 21 ~~GLt~~e~~~-r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~ 67 (217)
..|-|++|+.. -.++||.=.+-.|+-++.-..+|- .|++++++.
T Consensus 71 ~~G~sd~eI~~~~v~RYG~~Vl~~Pp~~~~t~~LW~---~P~~lll~g 115 (126)
T PRK10144 71 AEGKSEVEIIGWMTERYGDFVRYNPPLTGQTLVLWA---LPVVLLLLM 115 (126)
T ss_pred HcCCCHHHHHHHHHHhcCCeEEecCCCCcchHHHHH---HHHHHHHHH
Confidence 47999999854 667999988876655544444442 355544443
No 69
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=30.66 E-value=67 Score=30.01 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q psy2749 44 PKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYT 77 (217)
Q Consensus 44 ~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~ 77 (217)
...+++|..+...+.--++++|++++++.|+++.
T Consensus 293 ~r~r~~~~r~~~c~~~~i~~lL~ig~~~gFv~At 326 (387)
T PF12751_consen 293 YRQRSWFSRFASCIYLSILLLLVIGFAIGFVFAT 326 (387)
T ss_pred hccccHHhhhhHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3568899999888887777888888888888864
No 70
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=30.46 E-value=1.6e+02 Score=27.41 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHhcCCC
Q psy2749 22 RGLTHAKAKEVLERDGPN 39 (217)
Q Consensus 22 ~GLt~~e~~~r~~~~G~N 39 (217)
.+++++|+++++++-|.=
T Consensus 314 ~~~~p~~iA~~lkk~g~~ 331 (410)
T TIGR00967 314 LQLNPEDMAKNLKKQGMF 331 (410)
T ss_pred HccCHHHHHHHHHHCCCc
Confidence 588999999999998843
No 71
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB. This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=30.32 E-value=2.8e+02 Score=24.48 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHhcCCCC-------------------CCCCCCCCHHHHHHHHHhhhH
Q psy2749 23 GLTHAKAKEVLERDGPNA-------------------LTPPKQTPEWIKFCKQLFGGF 61 (217)
Q Consensus 23 GLt~~e~~~r~~~~G~N~-------------------l~~~k~~s~~~~~~~~~~d~~ 61 (217)
+.++++.++-+++||.|+ .+-...++.+..+++.+..-+
T Consensus 45 ~~~~~~~~~~~~~~gld~p~~~qy~~~l~~~~~gd~G~S~~~~~~V~~~i~~~l~~Tl 102 (314)
T TIGR02789 45 PPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDFGISYISDRPVLDEIARSLPATL 102 (314)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHhHHHH
Confidence 478899999999999996 111234667777777766443
No 72
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=27.79 E-value=2.4e+02 Score=26.53 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHhcCCC
Q psy2749 24 LTHAKAKEVLERDGPN 39 (217)
Q Consensus 24 Lt~~e~~~r~~~~G~N 39 (217)
++++|.++++++-|.=
T Consensus 330 ~~p~~iAe~l~k~g~~ 345 (426)
T PRK09204 330 FNPEEIAENLKKSGGF 345 (426)
T ss_pred cCHHHHHHHHHHCCCc
Confidence 7789999999998843
No 73
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=27.05 E-value=1.5e+02 Score=28.02 Aligned_cols=52 Identities=15% Similarity=-0.001 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHhcCC---CCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2749 24 LTHAKAKEVLERDGP---NALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIA 75 (217)
Q Consensus 24 Lt~~e~~~r~~~~G~---N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~ 75 (217)
++++|.++.+++.|. +.-|-++.+.++...+..+.-+=.+.|.+.|++..++
T Consensus 332 ~nP~~iAenL~k~G~~IPGiRPGk~T~~yL~~~i~rlt~~Gai~L~~ia~lP~i~ 386 (434)
T PRK12907 332 VNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVF 386 (434)
T ss_pred cCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 678999999999884 3333333344555555555544445555555555444
No 74
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=26.89 E-value=3.4e+02 Score=21.98 Aligned_cols=60 Identities=17% Similarity=0.331 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHhhcccccccchHHHHHHHhccCCceeEEeeecchhhhhhhhhhhhhhhhhhchhhhhhhhh
Q psy2749 123 LYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLIFDLLWLGIALTFVNVITGLFSYYQENK 197 (217)
Q Consensus 123 ~~~~i~I~~vv~i~~~i~~~qe~ka~k~~~~L~~~~~~~~~ViR~g~~~~~l~lg~iL~~Vv~~~~~~~~~Q~~~ 197 (217)
-.-|.+++.+.++....++...+..++ .|.....-..++|-++.++-.+|..+++.....
T Consensus 106 ~~lGl~~~~l~~lQ~~~G~~~~~~~~~---------------~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~~~~ 165 (191)
T cd08760 106 AILGIIVLALAILQPLLGLLRPHPGSK---------------KRSIWNWAHRWLGRAALILAIVNIFLGLDLAGA 165 (191)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCCCC---------------cccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355777777777777788776655443 233333458899999998888898888877664
No 75
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=26.29 E-value=41 Score=27.07 Aligned_cols=48 Identities=29% Similarity=0.300 Sum_probs=16.0
Q ss_pred CCCCHHHHHH-HHHhcCCCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2749 22 RGLTHAKAKE-VLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILC 72 (217)
Q Consensus 22 ~GLt~~e~~~-r~~~~G~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails 72 (217)
.|.|++|+.+ -.++||.=.+-.|+.+++...+|- -|+.++++.++++-
T Consensus 72 ~G~s~~eI~~~~v~rYG~~Vl~~Pp~~~~~~~lW~---~P~~~l~~g~~~~~ 120 (148)
T PF03918_consen 72 EGKSDEEIIDYFVERYGEFVLYEPPFKGFTWLLWL---GPFLLLLLGGALLF 120 (148)
T ss_dssp HT--HHHHHHHHHHHHTTT-EES--S--------------------------
T ss_pred cCCCHHHHHHHHHHhcCcceeecCCCCccHHHHHH---HHHHHHHHHHHHHH
Confidence 6999999854 677999888877665555444442 35555555554443
No 76
>PRK13852 type IV secretion system protein VirB6; Provisional
Probab=24.20 E-value=87 Score=28.18 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q psy2749 44 PKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYT 77 (217)
Q Consensus 44 ~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~ 77 (217)
|+.+.++..++.|+.|..+++++++++.++.+..
T Consensus 188 ~aTRrfF~~WlGQvlNYilL~vLv~av~si~~~~ 221 (295)
T PRK13852 188 DRTRDIAAKWIGQLITYGILLLLLNIVATIVILT 221 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999998865
No 77
>PRK09499 sifB secreted effector protein SifB; Provisional
Probab=24.11 E-value=45 Score=29.62 Aligned_cols=19 Identities=11% Similarity=0.055 Sum_probs=16.2
Q ss_pred CCCCCHHHHHHHHHhhhHH
Q psy2749 44 PKQTPEWIKFCKQLFGGFA 62 (217)
Q Consensus 44 ~k~~s~~~~~~~~~~d~~~ 62 (217)
..+++||+.+|+.++|+|-
T Consensus 20 ~T~esww~~LWEkiKdfFf 38 (316)
T PRK09499 20 ISQRSFFTLLWEKIKDFFC 38 (316)
T ss_pred chHHHHHHHHHHHHHHHhh
Confidence 3568999999999999875
No 78
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=24.09 E-value=3e+02 Score=25.76 Aligned_cols=28 Identities=11% Similarity=0.285 Sum_probs=18.5
Q ss_pred HHHHHHHhhcccccccchHHHHHHHhcc
Q psy2749 130 TAVVIVTGIFSYYQESKSSAIMDSFKNL 157 (217)
Q Consensus 130 ~~vv~i~~~i~~~qe~ka~k~~~~L~~~ 157 (217)
.+.+++...++.+++-++....+.-+.+
T Consensus 388 slLI~Vgv~~~~~~qi~a~~~~~~Y~~~ 415 (417)
T CHL00161 388 SLLILVGVAIDTSRQIQTYLISNNYENM 415 (417)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 3445566777888888887766655543
No 79
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.45 E-value=65 Score=27.34 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=25.3
Q ss_pred CchhHHHHHHHHHHHHhhcc--cccccchHHHHHHHh
Q psy2749 121 GKLYLGIVLTAVVIVTGIFS--YYQESKSSAIMDSFK 155 (217)
Q Consensus 121 ~~~~~~i~I~~vv~i~~~i~--~~qe~ka~k~~~~L~ 155 (217)
|+|+-|++|++++-..+..+ +||+.+++++=+.+.
T Consensus 27 gp~v~giailvVlGtag~~gy~yw~~s~as~sgd~fl 63 (221)
T COG4649 27 GPAVIGIAILVVLGTAGYVGYTYWQTSRASKSGDAFL 63 (221)
T ss_pred ccHHHHHHHHHHhccccceeeehhcccccccchHHHH
Confidence 57999999888877766655 688887766555444
No 80
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=23.30 E-value=50 Score=32.01 Aligned_cols=37 Identities=8% Similarity=0.176 Sum_probs=30.1
Q ss_pred hhhhhhhhhchhhhhhhhhHHHHHHHHhhcCCCCCCC
Q psy2749 179 ALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPG 215 (217)
Q Consensus 179 iL~~Vv~~~~~~~~~Q~~~ae~~m~~~~~m~p~~~~~ 215 (217)
++++.+++.-.+..+..+|+.+.+++++++.|+.+.+
T Consensus 59 ~i~~~~~~g~~le~~~~~~a~~~~~~L~~~~p~~a~~ 95 (562)
T TIGR01511 59 MLITFILLGRWLEMLAKGRASDALSKLAKLQPSTATL 95 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 4455566666888888899999999999999988764
No 81
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=22.88 E-value=79 Score=24.59 Aligned_cols=26 Identities=8% Similarity=0.040 Sum_probs=22.7
Q ss_pred hhhhhchhhhhhhhhHHHHHHHHhhc
Q psy2749 183 VNVITGLFSYYQENKSSRIMESFKNM 208 (217)
Q Consensus 183 Vv~~~~~~~~~Q~~~ae~~m~~~~~m 208 (217)
.-+++.+++|||-+.=.+.+..+++-
T Consensus 12 a~llQ~~lg~~Qik~Fn~~~~~L~~~ 37 (118)
T PRK10234 12 AWCAQLALGGWQISRFNRAFDTLCQQ 37 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55789999999999999999998873
No 82
>KOG1326|consensus
Probab=21.61 E-value=1.7e+02 Score=30.85 Aligned_cols=49 Identities=33% Similarity=0.321 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHH---hcCCCCCCCCCC------------CCHHHHHHHHHhhhHHHHHHHHHHH
Q psy2749 23 GLTHAKAKEVLE---RDGPNALTPPKQ------------TPEWIKFCKQLFGGFALLLWIGAIL 71 (217)
Q Consensus 23 GLt~~e~~~r~~---~~G~N~l~~~k~------------~s~~~~~~~~~~d~~~~iL~~~ail 71 (217)
=||..||.+|=+ +.-||.+.+|-+ +|+..+||+.+.-.+++.|++.-++
T Consensus 1021 ilt~~EA~~~PAG~gr~ePn~Le~P~Rpdtsf~wl~sp~K~~~~i~W~~yr~~il~~l~ilill 1084 (1105)
T KOG1326|consen 1021 ILTEKEADERPAGKGRDEPNKLEPPNRPDTSFLWLTSPCKSFKFILWHRYRWYILLLLLILILL 1084 (1105)
T ss_pred hhhhhhhhhCccccCCCCCCcCCCCCCCCccchhhcccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 467788887744 455787776643 4555778887776555554444433
No 83
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=21.47 E-value=1.1e+02 Score=19.55 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCC
Q psy2749 22 RGLTHAKAKEVLERDGPNALTPP 44 (217)
Q Consensus 22 ~GLt~~e~~~r~~~~G~N~l~~~ 44 (217)
..||++|..+.+.+||.+-.|--
T Consensus 4 ~~LSd~eL~~~L~~~G~~~gPIt 26 (44)
T smart00540 4 DRLSDAELRAELKQYGLPPGPIT 26 (44)
T ss_pred hHcCHHHHHHHHHHcCCCCCCcC
Confidence 47899999999999998877643
No 84
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=21.23 E-value=1.5e+02 Score=19.85 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=19.4
Q ss_pred CHHHHHHHcCCCCCCCCCCHHHHHHHHHhc
Q psy2749 7 KAKEVLERDGPNALTRGLTHAKAKEVLERD 36 (217)
Q Consensus 7 ~~~~l~~~l~~t~~~~GLt~~e~~~r~~~~ 36 (217)
++..+++.++ . .|||..+++..+++|
T Consensus 28 ~pk~I~~~~~-~---~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 28 TPKRILELMV-V---DGLTRDQVASHLQKY 53 (57)
T ss_pred chHHHHHHcC-C---CCCCHHHHHHHHHHH
Confidence 4466666666 2 588999999888887
No 85
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=20.51 E-value=2.8e+02 Score=21.11 Aligned_cols=40 Identities=23% Similarity=0.195 Sum_probs=31.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q psy2749 38 PNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYT 77 (217)
Q Consensus 38 ~N~l~~~k~~s~~~~~~~~~~d~~~~iL~~~ails~~~~~ 77 (217)
.|..|-........-++.+++-.|.+=|.+.|.+.++++.
T Consensus 61 lnS~PgRegv~~~aG~~tna~yGfviGl~i~aLlAlil~~ 100 (108)
T COG4062 61 LNSFPGREGVYATAGYLTNAFYGFVIGLGIMALLALILGV 100 (108)
T ss_pred cccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777888888888999889998888888764
Done!