RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2749
(217 letters)
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 205 bits (522), Expect = 4e-61
Identities = 86/157 (54%), Positives = 105/157 (66%), Gaps = 32/157 (20%)
Query: 5 HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
H + + LER L++GL+ A+A E+L RDGPNALTPP TPEW+KFC+QLFGGF++L
Sbjct: 18 HKLSLDELERKYGTDLSKGLSAARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSML 77
Query: 65 LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
LWIGAILCF+AY IQAST EEP +DN LY
Sbjct: 78 LWIGAILCFLAYGIQASTEEEPQNDN--------------------------------LY 105
Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQF 161
LG+VL+AVVI+TG FSYYQE+KSS IM+SFKN+VPQ
Sbjct: 106 LGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQ 142
Score = 72.1 bits (177), Expect = 1e-14
Identities = 29/40 (72%), Positives = 34/40 (85%)
Query: 172 DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ 211
D L+LG+ L+ V +ITG FSYYQE KSS+IMESFKNMVPQ
Sbjct: 102 DNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 141
>gnl|CDD|214842 smart00831, Cation_ATPase_N, Cation transporter/ATPase,
N-terminus. This entry represents the conserved
N-terminal region found in several classes of
cation-transporting P-type ATPases, including those
that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the
H+/K+- and Na+/K+-exchange P-ATPases, this domain is
found in the catalytic alpha chain. In gastric
H+/K+-ATPases, this domain undergoes reversible
sequential phosphorylation inducing conformational
changes that may be important for regulating the
function of these ATPases.
Length = 75
Score = 73.8 bits (182), Expect = 1e-17
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 8 AKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWI 67
+EVLER + L +GL+ +A LER GPN L PPK+T ++F +Q +L
Sbjct: 9 LEEVLERLQTD-LEKGLSSEEAARRLERYGPNELPPPKKTSPLLRFLRQFHNPLIYILLA 67
Query: 68 GAILCFIA 75
A+L +
Sbjct: 68 AAVLSALL 75
>gnl|CDD|201397 pfam00690, Cation_ATPase_N, Cation transporter/ATPase,
N-terminus. Members of this families are involved in
Na+/K+, H+/K+, Ca++ and Mg++ transport.
Length = 69
Score = 61.4 bits (150), Expect = 6e-13
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 8 AKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWI 67
+EVL R G + L +GLT A+A+E LE+ GPN L K W F +Q ++L I
Sbjct: 6 VEEVLARLGTD-LEKGLTEAEAEERLEKYGPNELPEKKPKSLWKIFLRQFKDPLVIILLI 64
Query: 68 GAILC 72
AI+
Sbjct: 65 AAIVS 69
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 45.0 bits (107), Expect = 1e-05
Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 41/155 (26%)
Query: 7 KAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLW 66
+ L + + T GL+ + K L++ GPN L K+ KF +Q F +LL
Sbjct: 28 VERNELLLELFTSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLL 87
Query: 67 IGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLG 126
+ A+L +
Sbjct: 88 VAALLSAF-------------------------------VGDWVDA----------GVDA 106
Query: 127 IVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQF 161
IV+ VV++ + + QE ++ +++ K +
Sbjct: 107 IVILLVVVINALLGFVQEYRAEKALEALKKMSSPK 141
Score = 28.8 bits (65), Expect = 2.5
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 178 IALTFVNVITGLFSYYQENKSSRIMESFKNMVP 210
+ + +N + G + QE ++ + +E+ K M
Sbjct: 110 LLVVVINALLG---FVQEYRAEKALEALKKMSS 139
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type
ATPase. This model describes the plasma membrane
proton efflux P-type ATPase found in plants, fungi,
protozoa, slime molds and archaea. The best studied
representative is from yeast.
Length = 754
Score = 39.6 bits (93), Expect = 7e-04
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 23 GLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFI 74
GLT A+AK+ L + GPN L P K+ +KF + + ++ AI+
Sbjct: 1 GLTSAEAKKRLAKYGPNEL-PEKKVSPLLKFLGFFWNPLSWVMEAAAIIAIA 51
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 37.7 bits (88), Expect = 0.004
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 18 NALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGF-----ALLLWIGAILC 72
N +GLT A E L+R GPN + K + QL F +L+ + AI
Sbjct: 40 NTHRQGLTEEDAAERLQRYGPNEVAHEKPPHALV----QLLQAFNNPFIYVLMVLAAISF 95
Query: 73 FIAYTIQASTVEE 85
F Y + EE
Sbjct: 96 FTDYWLPLRRGEE 108
Score = 30.0 bits (68), Expect = 1.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 2 GLTHAKAKEVLERDGPNALTR 22
GLT A E L+R GPN +
Sbjct: 45 GLTEEDAAERLQRYGPNEVAH 65
Score = 26.9 bits (60), Expect = 9.2
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 172 DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMV 209
DL + I LT V +++GL ++QE +S++ E+ K MV
Sbjct: 110 DLTGVIIILTMV-LLSGLLRFWQEFRSNKAAEALKAMV 146
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA;
Provisional.
Length = 902
Score = 33.1 bits (76), Expect = 0.12
Identities = 16/63 (25%), Positives = 25/63 (39%)
Query: 21 TRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQA 80
GL A+ + E+ G N L K P W+ F +LL I + + + A
Sbjct: 65 PEGLNEAEVESAREQHGENELPAQKPLPWWVHLWVCYRNPFNILLTILGAISYATEDLFA 124
Query: 81 STV 83
+ V
Sbjct: 125 AGV 127
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating
P-type ATPase found in a limited number of bacterial
species and best described in Salmonella typhimurium,
which contains two isoforms. These transporters are
active in low external Mg2+ concentrations and pump the
ion into the cytoplasm. The magnesium ATPases have been
classified as type IIIB by a phylogenetic analysis
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 867
Score = 32.5 bits (74), Expect = 0.16
Identities = 13/66 (19%), Positives = 26/66 (39%)
Query: 18 NALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYT 77
GLT+ + E L GPN K+ P + F +L + + ++
Sbjct: 28 GVHETGLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYILAMLMGVSYLTDD 87
Query: 78 IQASTV 83
++A+ +
Sbjct: 88 LEATVI 93
Score = 28.7 bits (64), Expect = 3.2
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 172 DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMV 209
DL I V +GL + QE+++ R + KNMV
Sbjct: 87 DLEATVIIALMVL-ASGLLGFIQESRAERAAYALKNMV 123
>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type
ATPase, fungal-type. Initially described as a calcium
efflux ATPase , more recent work has shown that the S.
pombe CTA3 gene is in fact a potassium ion efflux pump.
This model describes the clade of fungal P-type ATPases
responsible for potassium and sodium efflux. The degree
to which these pumps show preference for sodium or
potassium varies. This group of ATPases has been
classified by phylogentic analysis as type IID. The
Leishmania sequence (GP|3192903), which falls between
trusted and noise in this model, may very well turn out
to be an active potassium pump.
Length = 1053
Score = 31.9 bits (72), Expect = 0.24
Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 46/163 (28%)
Query: 5 HAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALL 64
+ + ++ GLTH +A+ L+ G N L Q+ ++
Sbjct: 8 FSDIADEAAEFIGTSIPEGLTHDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMV 67
Query: 65 LWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLY 124
L I A + F + W+
Sbjct: 68 LIIAAAISFAMHD----------------------WI----------------------- 82
Query: 125 LGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLV-PQFRVTQS 166
G V++A++ + + + QE K+ MDS KNL P V ++
Sbjct: 83 EGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVIRN 125
>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase.
Length = 222
Score = 31.0 bits (71), Expect = 0.34
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 128 VLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVT 164
++ +V++ + YQE ++ + + K L+P T
Sbjct: 1 IILLLVLINALLEAYQEYRARKALKALKKLLPPTAAT 37
Score = 29.1 bits (66), Expect = 1.3
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 179 ALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ 211
+ + +I L YQE ++ + +++ K ++P
Sbjct: 1 IILLLVLINALLEAYQEYRARKALKALKKLLPP 33
>gnl|CDD|203334 pfam05838, Glyco_hydro_108, Glycosyl hydrolase 108. This family
acts as a lysozyme (N-acetylmuramidase), EC:3.2.1.17.
It contains a conserved EGGY motif near the N-terminus,
the glutamic acid within this motif is essential for
catalytic activity. In bacteria, it may activate the
secretion of large proteins via the breaking and
rearrangement of the peptidoglycan layer during
secretion. It is frequently found at the N-terminus of
proteins containing a C-terminal pfam09374 domain.
Length = 87
Score = 28.8 bits (65), Expect = 0.60
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 1 MGLTHAKAKEVLERDGPNALTRGLTHAKAKEVLERD 36
G+T A A+ + D + LT +A + D
Sbjct: 26 FGITAATARALGYGDVDAGDIKALTRDQAVAIYRAD 61
>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase;
Provisional.
Length = 495
Score = 29.9 bits (68), Expect = 1.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 103 RHAISLVKARAVLNTSKKGKL 123
ISL +A VL S+KGKL
Sbjct: 175 NTPISLEEANEVLRESRKGKL 195
>gnl|CDD|145817 pfam02864, STAT_bind, STAT protein, DNA binding domain. STAT
proteins (Signal Transducers and Activators of
Transcription) are a family of transcription factors
that are specifically activated to regulate gene
transcription when cells encounter cytokines and growth
factors. This family represents the DNA binding domain
of STAT, which has an ig-like fold. STAT proteins also
include an SH2 domain pfam00017.
Length = 254
Score = 28.2 bits (63), Expect = 3.2
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 37 GPNALTPPKQTPEWIKFCKQLF--GGFALLLWIGAIL 71
G N+ W +FCK+ F W AIL
Sbjct: 214 GQNSSYSGGSIS-WSQFCKENLPGKSFTFWQWFDAIL 249
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
Length = 448
Score = 28.1 bits (63), Expect = 3.6
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 143 QESKSSAIMDSFKNLVPQFRVTQSHVLIFDLLWLGIALTFVNVITGLFSYYQENKS---- 198
++S S + SF+ + + RV L+F L A+ V L S + KS
Sbjct: 24 RDSTISTLSSSFRRISRKKRVIIISFLVFLFL----AIGGSIVSYVLVSKSKMVKSFKSD 79
Query: 199 --SRIMESFKNMVPQVSPG 215
I + F +
Sbjct: 80 LEEHIDKDFPRLDKSKRDS 98
>gnl|CDD|220990 pfam11124, Pho86, Inorganic phosphate transporter Pho86. Pho86p is
an ER protein which is produced in response to phosphate
starvation. It is essential for growth when phosphate
levels are limiting. Pho86p is also involved in the
regulation of Pho84p, a high-affinity phosphate
transporter which is localised to the endoplasmic
reticulum (ER) in low phosphate medium. When the level
of phosphate increases Pho84p is transported to the
vacuole. Pho86p is required for packaging of Pho84p in
to COPII vesicles.
Length = 296
Score = 28.1 bits (63), Expect = 3.8
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 127 IVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLIFDLLWLGIALTFVNVI 186
I ++ +VI ++ Y+ I +S + QF + IF L++ + +FV +
Sbjct: 55 ISISVLVIALPLYLAYKLWDPINISNSLIEWLYQFFLKNKKDFIFQLIYTLPSTSFVFTL 114
Query: 187 TGLFSY 192
G +Y
Sbjct: 115 LGRLAY 120
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
Length = 568
Score = 27.8 bits (62), Expect = 5.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 184 NVITGLFSYYQENKSSRIMESFK 206
NVI+G+F Y QE+ ++ FK
Sbjct: 113 NVISGIFDYLQEHAKGSVLYGFK 135
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 477
Score = 27.1 bits (61), Expect = 8.1
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 132 VVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLIFDLLWLGIALT------FVNV 185
VV++ GIF+ Q S +++V ++ T+S LWL L+ F +
Sbjct: 232 VVLIGGIFNNLQNYTSD------QDVVQRYLTTKSEKEARKSLWLNALLSLPVWLLFFFI 285
Query: 186 ITGLFSYYQEN 196
T L+ +YQ++
Sbjct: 286 GTALYVFYQQH 296
>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of
the cystathionine beta-synthase (CBS pair) domains in
the inosine 5' monophosphate dehydrogenase (IMPDH)
protein. IMPDH is an essential enzyme that catalyzes
the first step unique to GTP synthesis, playing a key
role in the regulation of cell proliferation and
differentiation. CBS is a small domain originally
identified in cystathionine beta-synthase and
subsequently found in a wide range of different
proteins. CBS domains usually come in tandem repeats,
which associate to form a so-called Bateman domain or a
CBS pair which is reflected in this model. The interface
between the two CBS domains forms a cleft that is a
potential ligand binding site. The CBS pair coexists
with a variety of other functional domains. It has been
proposed that the CBS domain may play a regulatory role,
although its exact function is unknown. Mutations of
conserved residues within this domain in IMPDH have been
associated with retinitis pigmentosa.
Length = 114
Score = 26.0 bits (58), Expect = 8.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 105 AISLVKARAVLNTSKKGKL 123
I+L +A +L SKKGKL
Sbjct: 75 GITLEEANEILRESKKGKL 93
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.414
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,887,452
Number of extensions: 1006687
Number of successful extensions: 1362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1357
Number of HSP's successfully gapped: 51
Length of query: 217
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 124
Effective length of database: 6,812,680
Effective search space: 844772320
Effective search space used: 844772320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.6 bits)