RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2749
(217 letters)
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 150 bits (380), Expect = 6e-42
Identities = 90/162 (55%), Positives = 110/162 (67%), Gaps = 37/162 (22%)
Query: 8 AKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWI 67
E+ + G + LTRGLT+A+AKE+L RDGPN+LTPP TPEWIKFC+QLFGGF++LLWI
Sbjct: 53 LDELHNKYGTD-LTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWI 111
Query: 68 GAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGI 127
GAILCF+AY IQA+T +EPA+DN LYLG+
Sbjct: 112 GAILCFLAYGIQAATEDEPANDN--------------------------------LYLGV 139
Query: 128 VLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVL 169
VL+ VVIVTG FSYYQE+KSS IMDSFKN+VPQ Q+ V+
Sbjct: 140 VLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQ----QALVI 177
Score = 62.7 bits (153), Expect = 1e-11
Identities = 28/40 (70%), Positives = 34/40 (85%)
Query: 172 DLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ 211
D L+LG+ L+ V ++TG FSYYQE KSSRIM+SFKNMVPQ
Sbjct: 133 DNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQ 172
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 149 bits (379), Expect = 8e-42
Identities = 67/162 (41%), Positives = 90/162 (55%), Gaps = 37/162 (22%)
Query: 8 AKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWI 67
E+ ++ +A T+GL+ + A E+L RDGPNAL PP+ TPE++KF +QL GG L+W+
Sbjct: 58 VAELEQKYQTSA-TKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWV 116
Query: 68 GAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGI 127
A +C IA+ IQAS + DDN LYL +
Sbjct: 117 AAAICLIAFAIQASEGDLTTDDN--------------------------------LYLAL 144
Query: 128 VLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVL 169
L AVV+VTG F YYQE KS+ I+ SFKNLVPQ Q+ V+
Sbjct: 145 ALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQ----QATVI 182
Score = 61.9 bits (151), Expect = 2e-11
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 170 IFDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQ 211
D L+L +AL V V+TG F YYQE KS+ I+ SFKN+VPQ
Sbjct: 136 TDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQ 177
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 61.1 bits (149), Expect = 3e-11
Identities = 31/166 (18%), Positives = 48/166 (28%), Gaps = 41/166 (24%)
Query: 5 HAK-AKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFAL 63
H+K +E L G + T GLT + K LE+ G N L + W +Q
Sbjct: 6 HSKSTEECLAYFGVS-ETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVR 64
Query: 64 LLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKL 123
+L + A IS V A
Sbjct: 65 ILLLAAC-----------------------------------ISFVLAWFEEGEETITAF 89
Query: 124 YLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVL 169
V+ ++I I +QE + +++ K P V
Sbjct: 90 VEPFVILLILIANAIVGVWQERNAENAIEALKEYEP----EMGKVY 131
Score = 29.1 bits (66), Expect = 1.3
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 178 IALTFVNVITGLFSYYQENKSSRIMESFKNMVP 210
+ + + + +QE + +E+ K P
Sbjct: 93 FVILLILIANAIVGVWQERNAENAIEALKEYEP 125
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 54.2 bits (131), Expect = 7e-09
Identities = 14/136 (10%), Positives = 42/136 (30%), Gaps = 39/136 (28%)
Query: 23 GLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFALLLWIGAILCFIAYTIQAST 82
GLT + ++ ++ GPN L K++ +KF ++ + ++ + AI+
Sbjct: 32 GLTTQEGEDRIQIFGPNKLEEKKESK-LLKFLGFMWNPLSWVMEMAAIMAIALANGDGRP 90
Query: 83 VEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKLYLGIVLTAVVIVTGIFSYY 142
+ + + ++++ S+
Sbjct: 91 PDWQD--------------------------------------FVGIICLLVINSTISFI 112
Query: 143 QESKSSAIMDSFKNLV 158
+E+ + + +
Sbjct: 113 EENNAGNAAAALMAGL 128
Score = 29.6 bits (67), Expect = 0.85
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 178 IALTFVNVITGLFSYYQENKSSRIMESFKNMV 209
+ + + VI S+ +EN + + +
Sbjct: 97 VGIICLLVINSTISFIEENNAGNAAAALMAGL 128
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 53.5 bits (129), Expect = 1e-08
Identities = 22/157 (14%), Positives = 50/157 (31%), Gaps = 50/157 (31%)
Query: 2 GLTHAKAKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGF 61
G +++L+ D GLT + + + G N + K+ ++KF G
Sbjct: 70 GGGRVVPEDMLQTDTRV----GLTSEEVVQRRRKYGLNQMKEEKENH-FLKFLGFFVGPI 124
Query: 62 ALLLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKG 121
++ A+L +E+ D
Sbjct: 125 QFVMEGAAVLAAG--------LEDWVD--------------------------------- 143
Query: 122 KLYLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLV 158
V+ ++++ + + QE ++ +I+D K +
Sbjct: 144 ----FGVICGLLLLNAVVGFVQEFQAGSIVDELKKTL 176
Score = 28.8 bits (65), Expect = 1.4
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 185 VITGLFSYYQENKSSRIMESFKNMV 209
++ + + QE ++ I++ K +
Sbjct: 152 LLNAVVGFVQEFQAGSIVDELKKTL 176
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 1e-05
Identities = 25/151 (16%), Positives = 56/151 (37%), Gaps = 39/151 (25%)
Query: 1 MGLTHAKAKEVLERDGPNALTRGLT-HAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFG 59
+G T + + L +G T H++ ++ +T W F +
Sbjct: 256 LGFTPGELRSYL---------KGATGHSQG--LV------TAVAIAETDSWESFFVSVRK 298
Query: 60 GFALLLWIG--AILCFIAYTIQASTVEEPADDN-------LTVCDITCCWLFRHAISLVK 110
+L +IG + ++ S +E+ ++N L++ ++T + + + K
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY---VNK 355
Query: 111 ARAVLNTSKKGKLYLGIVL----TAVVIVTG 137
+ L K+ + I L +V V+G
Sbjct: 356 TNSHLPAGKQ----VEISLVNGAKNLV-VSG 381
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 6.5
Identities = 4/22 (18%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 195 ENKSSRIME-SFKNMVPQVSPG 215
E ++ + ++ S K +P
Sbjct: 18 EKQALKKLQASLKLYADDSAPA 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.414
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,217,129
Number of extensions: 182113
Number of successful extensions: 342
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 22
Length of query: 217
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 127
Effective length of database: 4,188,903
Effective search space: 531990681
Effective search space used: 531990681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.0 bits)