RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2749
         (217 letters)



>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
           transmembrane domain M {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 472

 Score = 74.3 bits (182), Expect = 3e-16
 Identities = 33/180 (18%), Positives = 54/180 (30%), Gaps = 37/180 (20%)

Query: 5   HAK-AKEVLERDGPNALTRGLTHAKAKEVLERDGPNALTPPKQTPEWIKFCKQLFGGFAL 63
           H+K  +E L   G +  T GLT  + K  LE+ G N L   +    W    +Q       
Sbjct: 5   HSKSTEECLAYFGVS-ETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVR 63

Query: 64  LLWIGAILCFIAYTIQASTVEEPADDNLTVCDITCCWLFRHAISLVKARAVLNTSKKGKL 123
           +L + A + F+    +       A                                    
Sbjct: 64  ILLLAACISFVLAWFEEGEETITA-----------------------------------F 88

Query: 124 YLGIVLTAVVIVTGIFSYYQESKSSAIMDSFKNLVPQFRVTQSHVLIFDLLWLGIALTFV 183
               V+  ++I   I   +QE  +   +++ K   P         L   L   G  L+ V
Sbjct: 89  VEPFVILLILIANAIVGVWQERNAENAIEALKEYEPAATEQDKTPLQQKLDEFGEQLSKV 148



 Score = 30.0 bits (67), Expect = 0.23
 Identities = 5/53 (9%), Positives = 15/53 (28%)

Query: 163 VTQSHVLIFDLLWLGIALTFVNVITGLFSYYQENKSSRIMESFKNMVPQVSPG 215
             +              +  + +   +   +QE  +   +E+ K   P  +  
Sbjct: 77  WFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPAATEQ 129


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 771,394
Number of extensions: 32987
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 3
Length of query: 217
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 135
Effective length of database: 1,281,736
Effective search space: 173034360
Effective search space used: 173034360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.9 bits)