BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2751
         (102 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
           Ouabain And The E2p Form Of The Sodium-Potassium Pump
 pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
           Ouabain And The E2p Form Of The Sodium-Potassium Pump
 pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
 pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
          Length = 992

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 73/86 (84%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           A VIR GEK+++ AE++V+GD+V+VK GDRIPAD+RII   G KVDNSSLTGESEPQ+R 
Sbjct: 138 ALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRS 197

Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNA 89
            DFTN+NPLET+N+ FFSTN VEG A
Sbjct: 198 PDFTNENPLETRNIAFFSTNCVEGTA 223


>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
 pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
 pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
 pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
          Length = 998

 Score =  129 bits (323), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 73/86 (84%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           A VIR GEK+++ AE++V+GD+V+VK GDRIPAD+RII   G KVDNSSLTGESEPQ+R 
Sbjct: 144 ALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRS 203

Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNA 89
            DFTN+NPLET+N+ FFSTN VEG A
Sbjct: 204 PDFTNENPLETRNIAFFSTNCVEGTA 229


>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
           E2.2k+.Pi State
 pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
           Potassium And Ouabain
          Length = 1028

 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 70/86 (81%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           A VIR GEK T+ AE +V GD+V+VK GDRIPAD+RII   G KVDNSSLTGESEPQ+R 
Sbjct: 174 ALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRS 233

Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNA 89
            +F+++NPLET+N+ FFSTN VEG A
Sbjct: 234 PEFSSENPLETRNIAFFSTNCVEGTA 259


>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
 pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
 pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
           Rubidium
          Length = 1034

 Score =  114 bits (286), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/86 (59%), Positives = 71/86 (82%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           ATVIR G+K  + A+ +V+GD+V++K GDR+PADIRI++ +G KVDNSSLTGESEPQ+R 
Sbjct: 179 ATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRS 238

Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNA 89
            + T+++PLET+N+ FFST  +EG A
Sbjct: 239 PECTHESPLETRNIAFFSTMCLEGTA 264


>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
           Serca Ca2+-Atpase
          Length = 994

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 17/87 (19%)

Query: 15  VRAEDIVLGDVVDVKFGDRIPADIRIIECRG--FKVDNSSLTGES---------EPQSRG 63
           ++A DIV GD+V+V  GD++PADIRI+  +    +VD S LTGES          P  R 
Sbjct: 140 IKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRA 199

Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNAF 90
           V+       + KN+ F  TN   G A 
Sbjct: 200 VN------QDKKNMLFSGTNIAAGKAL 220


>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
           Absence Of Calcium
 pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
 pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
           Tg
 pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
           The Absence Of Calcium
 pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
           The Absence Of Calcium
 pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
 pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
 pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
           The Absence Of Ca2+
 pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
 pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
           In The Absence Of Calcium
 pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
           In The Absence Of Ca2+
 pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
           And Tg
 pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
           And Tg In The Absence Of Calcium
 pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
           Absence Of Calcium And Tg
 pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
           Absence Of Calcium And Tg
 pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
           Aluminium Fluoride, Adp And Calcium
          Length = 995

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 17/87 (19%)

Query: 15  VRAEDIVLGDVVDVKFGDRIPADIRIIECRG--FKVDNSSLTGES---------EPQSRG 63
           ++A DIV GD+V+V  GD++PADIRI+  +    +VD S LTGES          P  R 
Sbjct: 141 IKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRA 200

Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNAF 90
           V+       + KN+ F  TN   G A 
Sbjct: 201 VN------QDKKNMLFSGTNIAAGKAL 221


>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
 pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
           Ca2+
 pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
           Ca2+
 pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
           Ions
 pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
 pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
 pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
 pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
 pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
 pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
 pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
 pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
 pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
 pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
 pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
 pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
           Thapsigargin Derivative Boc-12adt.
 pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
           Form
 pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
           Partially Occupied Amppcp Site
 pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
 pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
           In A P1 Crystal Form.
 pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
           In A P1 Crystal Form.
 pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
           Fluoride And Cyclopiazonic Acid
 pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
           Cyclopiazonic Acid
 pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
           Serca Ca2+-Atpase
 pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
           Thapsigargin
 pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
           Thapsigargin
 pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
 pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
           The Presence Of Curcumin
 pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
           The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
 pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
           The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
 pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
           To Cyclopiazonic Acid With Atp
 pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
           To Cyclopiazonic And Adp
 pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
           Thapsigargin Derivative Dtb
 pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
           Thapsigargin Derivative Dotg
 pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
           Thapsigargin Derivative Boc-(Phi)tg
 pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
 pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
 pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
 pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
           Thapsigargin
          Length = 994

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 17/87 (19%)

Query: 15  VRAEDIVLGDVVDVKFGDRIPADIRIIECRG--FKVDNSSLTGES---------EPQSRG 63
           ++A DIV GD+V+V  GD++PADIRI+  +    +VD S LTGES          P  R 
Sbjct: 140 IKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRA 199

Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNAF 90
           V+       + KN+ F  TN   G A 
Sbjct: 200 VN------QDKKNMLFSGTNIAAGKAL 220


>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
           (Serca) From Bovine Muscle
          Length = 992

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 17/87 (19%)

Query: 15  VRAEDIVLGDVVDVKFGDRIPADIRIIECRG--FKVDNSSLTGES---------EPQSRG 63
           ++A DIV GD+V+V  GD++PADIRI+  +    +VD S LTGES          P  R 
Sbjct: 140 IKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRA 199

Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNAF 90
           V+       + KN+ F  TN   G A 
Sbjct: 200 VN------QDKKNMLFSGTNIAAGKAI 220


>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
 pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
          Length = 885

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 37/57 (64%)

Query: 6   VIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSR 62
           V+R G+     A  +V GD+V +K GD IPAD R++E    KVD S+LTGES P ++
Sbjct: 134 VLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTK 190


>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
           P-Type Atpase Copper Transporter Copa
 pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
           P-Type Atpase Copper Transporter Copa
          Length = 645

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 3/62 (4%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEP--QS 61
           A VIR G+++ V  E++ +GD+V V+ G++IP D  ++E   + VD S ++GE  P  +S
Sbjct: 135 AVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKS 193

Query: 62  RG 63
           +G
Sbjct: 194 KG 195


>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
           P-Type Atpase Copper Transporter Copa
 pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
           P-Type Atpase Copper Transporter Copa
          Length = 723

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 3/62 (4%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEP--QS 61
           A VIR G+++ V  E++ +GD+V V+ G++IP D  ++E   + VD S ++GE  P  +S
Sbjct: 213 AVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKS 271

Query: 62  RG 63
           +G
Sbjct: 272 KG 273


>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
 pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase
          From Archaeoglobus Fulgidus
          Length = 113

 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 3/62 (4%)

Query: 4  ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEP--QS 61
          A VIR G+++ V  E++ +GD+V V+ G++IP D  ++E   + VD S ++GE  P  +S
Sbjct: 14 AVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKS 72

Query: 62 RG 63
          +G
Sbjct: 73 KG 74


>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
 pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
          Length = 920

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGF-KVDNSSLTGES 57
           A V+R G    + A ++V GD++ V+ G  IPAD RI+    F +VD S+LTGES
Sbjct: 180 AVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGES 234


>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
 pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
 pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
 pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
          Length = 736

 Score = 38.5 bits (88), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 10  GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSR 62
           G +  V  +++ +GD++ V+ G++IP D  + E R F VD S +TGE  P ++
Sbjct: 234 GSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEPIPVAK 285


>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
          Transporting Atpase Atp7a
          Length = 124

 Score = 32.7 bits (73), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 23 GDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSR 62
          GD++ V  G + P D R+IE     VD S +TGE+ P ++
Sbjct: 45 GDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEAMPVAK 83


>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
           Domain Of Csf-1r
          Length = 324

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 52  SLTGESEPQSRGVDFTNDNPLETKNLGFFSTNAVEGNAF 90
           SL    +P+  G+D  +  PLE ++L  FS+   +G AF
Sbjct: 137 SLAPGQDPE--GLDKEDGRPLELRDLLHFSSQVAQGMAF 173


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.137    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,935,089
Number of Sequences: 62578
Number of extensions: 111826
Number of successful extensions: 304
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 16
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)