Query psy2751
Match_columns 102
No_of_seqs 133 out of 1269
Neff 8.3
Searched_HMMs 46136
Date Sat Aug 17 00:17:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01523 ATPase-IID_K-Na pota 99.9 1.4E-27 3E-32 192.9 10.7 100 2-101 118-222 (1053)
2 PF00122 E1-E2_ATPase: E1-E2 A 99.9 2.2E-27 4.8E-32 163.4 9.6 93 3-101 35-128 (230)
3 TIGR01647 ATPase-IIIA_H plasma 99.9 5.9E-27 1.3E-31 184.4 11.4 90 2-101 92-181 (755)
4 TIGR01106 ATPase-IIC_X-K sodiu 99.9 6.1E-27 1.3E-31 188.5 11.6 100 2-101 141-240 (997)
5 TIGR01524 ATPase-IIIB_Mg magne 99.9 1.3E-26 2.7E-31 184.6 12.3 100 2-101 125-233 (867)
6 PRK10517 magnesium-transportin 99.9 1.1E-26 2.5E-31 185.4 12.0 100 2-101 159-267 (902)
7 KOG0205|consensus 99.9 2E-27 4.4E-32 181.7 7.3 90 2-101 134-223 (942)
8 TIGR01522 ATPase-IIA2_Ca golgi 99.9 1.5E-26 3.3E-31 184.5 12.1 100 2-101 117-220 (884)
9 COG0474 MgtA Cation transport 99.9 7.8E-27 1.7E-31 186.6 10.4 100 2-101 140-243 (917)
10 TIGR01116 ATPase-IIA1_Ca sarco 99.9 1.5E-26 3.2E-31 185.1 11.7 100 2-101 73-175 (917)
11 TIGR01517 ATPase-IIB_Ca plasma 99.9 4.7E-26 1E-30 182.6 11.5 92 2-101 166-257 (941)
12 PRK15122 magnesium-transportin 99.9 2.1E-25 4.5E-30 178.3 12.4 100 2-101 148-266 (903)
13 TIGR01657 P-ATPase-V P-type AT 99.9 2.6E-25 5.7E-30 179.8 12.3 98 3-101 230-344 (1054)
14 TIGR01512 ATPase-IB2_Cd heavy 99.9 1E-24 2.2E-29 166.4 10.9 89 2-101 55-143 (536)
15 KOG0202|consensus 99.9 6.8E-25 1.5E-29 171.0 9.4 98 3-100 116-217 (972)
16 PRK14010 potassium-transportin 99.9 2E-24 4.3E-29 168.1 10.1 91 3-101 105-196 (673)
17 TIGR01525 ATPase-IB_hvy heavy 99.9 3.1E-24 6.7E-29 164.3 10.6 89 2-101 55-144 (556)
18 PRK01122 potassium-transportin 99.9 4.3E-24 9.3E-29 166.3 10.4 91 3-101 105-196 (679)
19 TIGR01511 ATPase-IB1_Cu copper 99.9 7.4E-24 1.6E-28 162.6 10.8 89 2-101 91-180 (562)
20 PRK11033 zntA zinc/cadmium/mer 99.9 1.1E-23 2.4E-28 165.8 10.2 89 2-101 243-331 (741)
21 TIGR01497 kdpB K+-transporting 99.9 1.4E-23 3.1E-28 163.3 10.6 91 3-101 106-197 (675)
22 PRK10671 copA copper exporting 99.9 1.3E-23 2.8E-28 166.9 10.3 89 2-101 323-411 (834)
23 TIGR01494 ATPase_P-type ATPase 99.9 1.2E-22 2.7E-27 153.7 10.1 88 2-101 35-122 (499)
24 COG2217 ZntA Cation transport 99.9 1.2E-22 2.7E-27 158.7 9.9 89 2-101 211-300 (713)
25 TIGR01652 ATPase-Plipid phosph 99.9 7.2E-23 1.6E-27 165.8 8.8 100 2-101 85-228 (1057)
26 KOG0204|consensus 99.9 3.9E-22 8.5E-27 155.9 9.8 92 2-101 220-311 (1034)
27 KOG0208|consensus 99.9 3.5E-21 7.5E-26 152.1 10.8 99 3-102 251-365 (1140)
28 KOG0203|consensus 99.9 1.5E-21 3.3E-26 152.5 8.5 100 2-101 163-262 (1019)
29 PLN03190 aminophospholipid tra 99.8 5.5E-20 1.2E-24 150.1 10.8 100 2-101 171-310 (1178)
30 KOG0207|consensus 99.8 1.9E-19 4.1E-24 141.6 7.7 88 3-101 379-467 (951)
31 KOG0209|consensus 99.7 5.2E-17 1.1E-21 127.4 9.3 99 3-102 254-375 (1160)
32 COG2216 KdpB High-affinity K+ 99.6 3.8E-16 8.2E-21 117.9 6.0 88 6-101 108-196 (681)
33 KOG0210|consensus 99.5 1.7E-13 3.7E-18 106.6 8.9 96 5-101 166-303 (1051)
34 KOG0206|consensus 99.3 5.8E-12 1.3E-16 102.7 7.7 100 2-101 115-257 (1151)
35 KOG4383|consensus 88.7 0.24 5.3E-06 40.3 1.5 38 6-43 160-197 (1354)
36 PF03120 DNA_ligase_OB: NAD-de 83.4 0.5 1.1E-05 28.0 0.7 19 17-35 47-66 (82)
37 PF01455 HupF_HypC: HupF/HypC 81.2 7.3 0.00016 22.1 4.9 31 3-33 18-51 (68)
38 cd00081 Hint Hedgehog/Intein d 81.1 3.1 6.7E-05 25.7 3.7 27 3-29 73-99 (136)
39 PRK11507 ribosome-associated p 79.4 3.4 7.5E-05 23.7 3.2 26 5-30 38-63 (70)
40 PF15584 Imm44: Immunity prote 78.3 1.1 2.4E-05 27.1 0.9 19 22-40 13-31 (94)
41 PF12791 RsgI_N: Anti-sigma fa 74.8 8.9 0.00019 20.4 3.9 35 2-36 6-42 (56)
42 PRK14715 DNA polymerase II lar 74.1 2.7 5.8E-05 36.7 2.3 30 2-31 988-1017(1627)
43 PRK14898 DNA-directed RNA poly 73.2 5.8 0.00013 33.0 4.1 34 2-37 169-202 (858)
44 COG1188 Ribosome-associated he 73.1 6.2 0.00014 24.3 3.3 26 8-34 38-63 (100)
45 PF13275 S4_2: S4 domain; PDB: 72.4 2.2 4.8E-05 24.1 1.1 23 6-28 35-57 (65)
46 COG0272 Lig NAD-dependent DNA 71.6 3.4 7.3E-05 33.4 2.3 30 15-44 363-394 (667)
47 PF06820 Phage_fiber_C: Putati 69.4 6.3 0.00014 21.9 2.4 29 20-49 5-34 (64)
48 PF07591 PT-HINT: Pretoxin HIN 69.2 3.9 8.5E-05 26.0 1.9 27 13-39 70-96 (130)
49 PF09926 DUF2158: Uncharacteri 65.7 5.1 0.00011 21.7 1.6 12 21-32 2-13 (53)
50 smart00532 LIGANc Ligase N fam 64.6 5.1 0.00011 30.8 2.0 21 15-35 358-379 (441)
51 PF07385 DUF1498: Protein of u 60.8 22 0.00048 25.0 4.4 27 3-34 138-164 (225)
52 PRK10413 hydrogenase 2 accesso 59.5 29 0.00063 20.5 4.2 30 4-33 20-56 (82)
53 PRK15175 Vi polysaccharide exp 59.5 19 0.00042 26.9 4.2 28 2-29 198-235 (355)
54 PRK14701 reverse gyrase; Provi 59.3 12 0.00026 33.5 3.5 34 2-35 960-993 (1638)
55 KOG3416|consensus 58.6 7.2 0.00016 25.1 1.6 16 18-33 60-75 (134)
56 PRK14350 ligA NAD-dependent DN 58.1 7.5 0.00016 31.5 2.0 21 15-35 360-381 (669)
57 TIGR00074 hypC_hupF hydrogenas 57.6 36 0.00078 19.8 4.5 27 6-32 19-48 (76)
58 PF12148 DUF3590: Protein of u 57.3 3.8 8.3E-05 24.4 0.2 20 12-31 58-77 (85)
59 PRK07956 ligA NAD-dependent DN 57.3 8.1 0.00018 31.3 2.1 27 15-41 363-391 (665)
60 smart00739 KOW KOW (Kyprides, 57.2 17 0.00037 16.0 2.7 23 20-42 2-24 (28)
61 PRK08097 ligB NAD-dependent DN 57.1 8 0.00017 30.7 1.9 20 16-35 356-376 (562)
62 PF03453 MoeA_N: MoeA N-termin 56.9 14 0.0003 24.2 2.8 34 17-51 81-116 (162)
63 PF09866 DUF2093: Uncharacteri 56.8 8.3 0.00018 19.9 1.4 24 20-43 2-26 (42)
64 PRK11479 hypothetical protein; 56.6 6.4 0.00014 28.5 1.2 23 13-35 58-80 (274)
65 TIGR02219 phage_NlpC_fam putat 56.1 7 0.00015 24.8 1.3 18 13-30 70-87 (134)
66 TIGR00575 dnlj DNA ligase, NAD 55.4 9 0.00019 30.9 2.0 21 15-35 351-372 (652)
67 COG2501 S4-like RNA binding pr 55.3 20 0.00044 20.7 3.0 27 4-30 37-63 (73)
68 PRK14351 ligA NAD-dependent DN 54.8 9.2 0.0002 31.1 2.0 26 15-40 385-412 (689)
69 PRK04980 hypothetical protein; 54.3 21 0.00045 22.0 3.1 29 17-45 29-59 (102)
70 PF06251 Caps_synth_GfcC: Caps 52.7 22 0.00047 24.6 3.4 29 2-30 167-203 (229)
71 PRK06033 hypothetical protein; 52.1 15 0.00033 21.6 2.2 23 15-37 15-37 (83)
72 PF00877 NLPC_P60: NlpC/P60 fa 51.8 11 0.00025 22.4 1.7 18 13-30 45-62 (105)
73 cd00433 Peptidase_M17 Cytosol 51.3 16 0.00034 28.4 2.7 44 14-57 296-354 (468)
74 PRK10838 spr outer membrane li 51.2 11 0.00025 25.7 1.7 20 13-32 122-141 (190)
75 PRK04132 replication factor C 51.0 20 0.00043 30.0 3.3 32 3-36 135-167 (846)
76 TIGR02988 YaaA_near_RecF S4 do 50.3 23 0.00049 19.0 2.6 23 6-28 36-58 (59)
77 PRK05015 aminopeptidase B; Pro 49.1 25 0.00054 27.1 3.4 46 14-59 247-307 (424)
78 PRK08433 flagellar motor switc 47.5 20 0.00043 22.4 2.3 25 14-38 39-63 (111)
79 PRK10409 hydrogenase assembly 47.3 55 0.0012 19.7 4.1 14 19-32 41-54 (90)
80 COG1043 LpxA Acyl-[acyl carrie 45.7 55 0.0012 23.5 4.5 83 18-100 20-113 (260)
81 PRK06788 flagellar motor switc 45.5 21 0.00045 22.6 2.2 27 14-40 41-67 (119)
82 TIGR02480 fliN flagellar motor 45.5 20 0.00043 20.5 2.0 21 17-37 18-38 (77)
83 COG1372 Intein/homing endonucl 44.6 31 0.00067 24.8 3.3 35 4-39 84-118 (420)
84 PRK10680 molybdopterin biosynt 43.7 33 0.00072 26.1 3.4 28 17-44 87-116 (411)
85 COG0522 RpsD Ribosomal protein 43.4 25 0.00055 24.3 2.5 31 5-35 120-150 (205)
86 PRK10348 ribosome-associated h 43.2 34 0.00073 22.1 2.9 27 6-33 36-62 (133)
87 PRK15078 polysaccharide export 41.0 30 0.00065 26.0 2.8 29 2-30 211-251 (379)
88 COG2139 RPL21A Ribosomal prote 40.8 48 0.001 20.3 3.1 38 47-99 42-80 (98)
89 PRK00913 multifunctional amino 40.2 31 0.00068 27.0 2.8 44 14-57 310-368 (483)
90 cd00210 PTS_IIA_glc PTS_IIA, P 40.2 96 0.0021 19.6 4.7 55 21-85 24-99 (124)
91 PF01052 SpoA: Surface present 40.2 17 0.00038 20.5 1.1 14 18-31 27-40 (77)
92 PRK05698 fliN flagellar motor 39.8 26 0.00056 23.3 2.0 25 14-38 86-110 (155)
93 PF13403 Hint_2: Hint domain 39.5 26 0.00056 22.7 2.0 48 14-65 15-64 (147)
94 PF12969 DUF3857: Domain of Un 38.5 41 0.00089 21.6 2.9 18 12-29 82-99 (177)
95 cd04090 eEF2_II_snRNP Loc2 eEF 38.0 55 0.0012 19.2 3.1 15 15-29 66-80 (94)
96 PRK05327 rpsD 30S ribosomal pr 37.6 45 0.00097 22.9 3.0 26 6-31 120-145 (203)
97 KOG2107|consensus 37.4 39 0.00083 22.9 2.5 20 9-31 112-131 (179)
98 COG4013 Uncharacterized protei 37.3 75 0.0016 19.0 3.5 27 18-45 19-45 (91)
99 PF11142 DUF2917: Protein of u 37.1 34 0.00075 18.9 2.0 14 20-33 40-53 (63)
100 cd06555 ASCH_PF0470_like ASC-1 37.0 55 0.0012 20.3 3.1 13 18-30 30-42 (109)
101 PRK08983 fliN flagellar motor 36.2 10 0.00023 24.2 -0.3 25 14-38 58-82 (127)
102 CHL00113 rps4 ribosomal protei 36.1 49 0.0011 22.8 3.0 25 6-30 116-140 (201)
103 PLN02699 Bifunctional molybdop 35.8 1.1E+02 0.0025 24.8 5.4 31 18-49 86-118 (659)
104 TIGR01017 rpsD_bact ribosomal 35.2 43 0.00094 22.9 2.6 26 6-31 117-142 (200)
105 TIGR00300 conserved hypothetic 35.1 93 0.002 23.9 4.5 30 1-30 120-151 (407)
106 COG0512 PabA Anthranilate/para 35.0 21 0.00045 24.5 1.0 36 3-39 27-62 (191)
107 PRK07963 fliN flagellar motor 34.7 36 0.00079 22.1 2.1 24 15-38 68-91 (137)
108 PF05708 DUF830: Orthopoxvirus 34.5 20 0.00043 22.8 0.9 15 19-33 1-15 (158)
109 COG1917 Uncharacterized conser 34.2 27 0.00059 21.6 1.4 19 15-33 81-99 (131)
110 cd00887 MoeA MoeA family. Memb 34.1 74 0.0016 23.9 3.9 31 18-49 79-111 (394)
111 PF08696 Dna2: DNA replication 34.0 62 0.0014 22.2 3.3 19 9-30 17-35 (209)
112 PF07883 Cupin_2: Cupin domain 33.8 56 0.0012 17.4 2.6 16 18-33 39-54 (71)
113 cd03689 RF3_II RF3_II: this su 33.7 69 0.0015 18.5 3.0 15 15-29 57-71 (85)
114 PRK08916 flagellar motor switc 33.7 38 0.00082 21.3 2.0 25 14-38 52-76 (116)
115 cd04451 S1_IF1 S1_IF1: Transla 32.6 88 0.0019 16.9 4.4 12 19-30 40-51 (64)
116 cd03690 Tet_II Tet_II: This su 32.5 77 0.0017 18.2 3.1 13 16-28 59-71 (85)
117 COG4043 Preprotein translocase 32.2 40 0.00087 20.9 1.8 27 16-43 30-56 (111)
118 PF14592 Chondroitinas_B: Chon 32.0 60 0.0013 25.1 3.1 20 17-36 11-30 (425)
119 TIGR00830 PTBA PTS system, glu 31.8 1.4E+02 0.0029 18.9 4.6 54 22-85 25-99 (121)
120 PRK06437 hypothetical protein; 31.8 66 0.0014 17.8 2.6 26 20-45 32-57 (67)
121 PF05899 Cupin_3: Protein of u 31.4 22 0.00047 20.1 0.6 16 18-33 46-61 (74)
122 PF11197 DUF2835: Protein of u 31.3 54 0.0012 18.6 2.2 21 2-22 21-42 (68)
123 PF02814 UreE_N: UreE urease a 31.3 37 0.00081 18.7 1.5 17 18-34 49-65 (65)
124 CHL00010 infA translation init 30.7 66 0.0014 18.5 2.6 23 20-42 47-69 (78)
125 COG3655 Predicted transcriptio 30.5 35 0.00075 19.8 1.3 16 17-32 54-69 (73)
126 PRK00276 infA translation init 30.4 66 0.0014 18.1 2.5 11 20-30 47-57 (72)
127 cd00165 S4 S4/Hsp/ tRNA synthe 30.3 73 0.0016 16.4 2.6 25 6-30 28-52 (70)
128 PF02311 AraC_binding: AraC-li 29.9 35 0.00077 20.2 1.4 16 18-33 43-58 (136)
129 PRK14491 putative bifunctional 29.9 75 0.0016 25.5 3.5 28 17-44 277-306 (597)
130 PF06107 DUF951: Bacterial pro 29.8 44 0.00095 18.4 1.6 13 19-31 1-13 (57)
131 PF04970 LRAT: Lecithin retino 29.6 35 0.00076 21.1 1.4 15 17-31 4-18 (125)
132 PRK14497 putative molybdopteri 29.5 97 0.0021 24.7 4.0 28 17-44 88-117 (546)
133 TIGR00061 L21 ribosomal protei 29.3 1.1E+02 0.0023 18.7 3.4 23 20-42 13-40 (101)
134 smart00363 S4 S4 RNA-binding d 29.1 71 0.0015 15.8 2.4 24 7-30 29-52 (60)
135 cd04092 mtEFG2_II_like mtEFG2_ 28.9 88 0.0019 17.6 2.9 15 15-29 56-70 (83)
136 COG0303 MoeA Molybdopterin bio 28.7 1.6E+02 0.0035 22.5 5.0 28 17-44 86-115 (404)
137 PRK14690 molybdopterin biosynt 28.3 1.2E+02 0.0025 23.3 4.2 28 17-44 103-132 (419)
138 PLN02947 oxidoreductase 27.8 68 0.0015 24.1 2.8 29 5-33 265-297 (374)
139 COG0361 InfA Translation initi 27.8 68 0.0015 18.7 2.2 13 19-31 46-58 (75)
140 CHL00075 rpl21 ribosomal prote 27.4 1.3E+02 0.0029 18.6 3.6 22 21-42 17-43 (108)
141 PF03079 ARD: ARD/ARD' family; 27.4 74 0.0016 21.0 2.7 21 9-32 111-131 (157)
142 cd04088 EFG_mtEFG_II EFG_mtEFG 27.1 82 0.0018 17.7 2.6 15 14-28 55-69 (83)
143 PF01479 S4: S4 domain; Inter 27.0 31 0.00067 17.4 0.7 20 7-26 29-48 (48)
144 COG4079 Uncharacterized protei 26.9 82 0.0018 22.8 2.9 15 19-33 261-275 (293)
145 TIGR00008 infA translation ini 26.7 86 0.0019 17.8 2.5 11 20-30 45-55 (68)
146 cd04712 BAH_DCM_I BAH, or Brom 26.7 42 0.00091 21.3 1.4 15 18-32 4-18 (130)
147 PRK14714 DNA polymerase II lar 26.3 81 0.0018 27.9 3.2 30 2-31 1013-1042(1337)
148 PF12852 Cupin_6: Cupin 26.2 1.2E+02 0.0026 19.8 3.5 16 17-32 56-71 (186)
149 cd03700 eEF2_snRNP_like_II EF2 26.1 1.3E+02 0.0027 17.5 3.3 15 15-29 66-80 (93)
150 PF11871 DUF3391: Domain of un 25.9 43 0.00092 20.5 1.3 19 12-30 2-20 (128)
151 PF02080 TrkA_C: TrkA-C domain 25.2 73 0.0016 17.1 2.0 23 6-28 33-56 (71)
152 cd05793 S1_IF1A S1_IF1A: Trans 25.0 94 0.002 17.9 2.5 12 19-30 38-49 (77)
153 PRK05573 rplU 50S ribosomal pr 24.9 1.3E+02 0.0028 18.4 3.3 21 21-41 15-40 (103)
154 cd06462 Peptidase_S24_S26 The 24.9 86 0.0019 17.1 2.4 14 20-33 14-27 (84)
155 PF14168 YjzC: YjzC-like prote 24.8 72 0.0016 17.5 1.9 16 20-35 29-44 (57)
156 PF06249 EutQ: Ethanolamine ut 24.4 62 0.0013 21.4 1.8 15 20-34 117-131 (152)
157 PF00467 KOW: KOW motif; Inte 24.3 69 0.0015 14.9 1.6 19 22-40 1-19 (32)
158 cd04456 S1_IF1A_like S1_IF1A_l 24.3 95 0.0021 18.0 2.5 11 20-30 39-49 (78)
159 PF05382 Amidase_5: Bacterioph 24.2 52 0.0011 21.5 1.5 18 11-28 64-84 (145)
160 PF13550 Phage-tail_3: Putativ 24.1 54 0.0012 20.7 1.5 17 15-31 135-151 (164)
161 KOG0024|consensus 23.5 57 0.0012 24.5 1.7 17 16-32 79-95 (354)
162 PF03339 Pox_L3_FP4: Poxvirus 23.4 1.7E+02 0.0037 21.7 4.1 16 19-34 252-267 (319)
163 PRK06666 fliM flagellar motor 22.8 74 0.0016 23.2 2.2 24 15-38 266-289 (337)
164 PF01176 eIF-1a: Translation i 22.8 67 0.0015 17.7 1.6 23 18-40 40-62 (65)
165 COG4766 EutQ Ethanolamine util 22.7 71 0.0015 21.4 1.9 14 21-34 141-154 (176)
166 COG1018 Hmp Flavodoxin reducta 22.7 57 0.0012 23.3 1.5 30 5-34 71-104 (266)
167 cd00320 cpn10 Chaperonin 10 Kd 22.7 70 0.0015 19.0 1.7 11 19-29 57-67 (93)
168 PF04225 OapA: Opacity-associa 22.6 1.1E+02 0.0023 17.9 2.5 25 16-44 39-63 (85)
169 PRK05933 type III secretion sy 22.4 54 0.0012 24.6 1.4 15 76-90 345-359 (372)
170 cd04486 YhcR_OBF_like YhcR_OBF 22.3 1E+02 0.0022 17.7 2.3 12 17-28 42-53 (78)
171 COG0260 PepB Leucyl aminopepti 22.3 34 0.00074 26.8 0.4 46 13-58 308-368 (485)
172 KOG3403|consensus 22.3 73 0.0016 20.5 1.8 24 19-42 70-95 (145)
173 TIGR01683 thiS thiamine biosyn 22.3 1.4E+02 0.0031 16.0 3.0 25 4-28 30-57 (64)
174 cd05829 Sortase_E Sortase E (S 22.1 63 0.0014 20.7 1.5 15 16-30 69-83 (144)
175 TIGR03635 S17_bact 30S ribosom 22.0 1.2E+02 0.0026 17.3 2.5 17 15-31 44-60 (71)
176 COG2932 Predicted transcriptio 21.8 97 0.0021 21.0 2.5 22 19-40 136-157 (214)
177 cd03699 lepA_II lepA_II: This 21.8 1.7E+02 0.0036 16.7 3.2 15 14-28 21-35 (86)
178 PF00829 Ribosomal_L21p: Ribos 21.6 40 0.00086 20.3 0.5 12 79-90 59-70 (96)
179 TIGR01397 fliM_switch flagella 21.5 24 0.00053 25.5 -0.5 24 15-38 261-284 (320)
180 TIGR03028 EpsE polysaccharide 21.5 64 0.0014 22.4 1.6 14 20-33 151-164 (239)
181 PRK02290 3-dehydroquinate synt 21.3 1.3E+02 0.0027 22.7 3.1 17 14-30 310-326 (344)
182 PF08007 Cupin_4: Cupin superf 21.3 56 0.0012 23.8 1.3 15 19-33 179-193 (319)
183 TIGR00739 yajC preprotein tran 21.2 72 0.0016 18.7 1.6 16 17-32 35-50 (84)
184 COG3400 Uncharacterized protei 21.1 1.3E+02 0.0029 23.1 3.2 26 4-29 180-206 (471)
185 cd06552 ASCH_yqfb_like ASC-1 h 21.0 1.7E+02 0.0036 17.1 3.2 27 18-44 27-53 (100)
186 PF00190 Cupin_1: Cupin; Inte 20.9 1.7E+02 0.0036 18.4 3.4 15 19-33 87-101 (144)
187 COG0298 HypC Hydrogenase matur 20.8 1.2E+02 0.0025 18.0 2.3 16 18-33 37-52 (82)
188 PRK08432 flagellar motor switc 20.7 87 0.0019 22.6 2.2 25 14-38 213-237 (283)
189 cd04498 hPOT1_OB2 hPOT1_OB2: A 20.6 62 0.0013 20.6 1.2 14 17-30 74-87 (123)
190 PF10162 G8: G8 domain; Inter 20.6 2.3E+02 0.0049 17.6 5.2 17 22-38 11-27 (125)
191 PLN02758 oxidoreductase, 2OG-F 20.1 74 0.0016 23.7 1.7 29 5-33 253-285 (361)
192 KOG1535|consensus 20.0 72 0.0016 22.3 1.5 11 18-28 175-185 (217)
193 PRK14498 putative molybdopteri 20.0 1.5E+02 0.0033 23.7 3.5 27 18-44 96-124 (633)
No 1
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.95 E-value=1.4e-27 Score=192.86 Aligned_cols=100 Identities=36% Similarity=0.509 Sum_probs=90.0
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCC----CCC-CCCccc
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFT----NDN-PLETKN 76 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~----~~~-~~~~~~ 76 (102)
.+++|+|+|+++.|++++|+|||+|.+++||+||||++|+++.+|.||||+|||||.|+.|.+... ... ..+..|
T Consensus 118 ~~~~ViRdg~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rLi~~~~L~VDES~LTGES~pV~K~~~~~~~~~~~~~~~d~~n 197 (1053)
T TIGR01523 118 PMAHVIRNGKSDAIDSHDLVPGDICLLKTGDTIPADLRLIETKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRIN 197 (1053)
T ss_pred CceEEEeCCeeeecCHhhCCCCCEEEECCCCEeeccEEEEEeCceEEEchhhcCCCCceeccccccccccccCCcccCCC
Confidence 368999999999999999999999999999999999999999889999999999999999986532 112 235679
Q ss_pred EEEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751 77 LGFFSTNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 77 ~v~~Gt~v~~g~~~~~V~~tG~~t~ 101 (102)
++|+||.|.+|++.++|++||.+|.
T Consensus 198 ~lf~GT~V~~G~g~~vVvatG~~T~ 222 (1053)
T TIGR01523 198 LAFSSSAVTKGRAKGICIATALNSE 222 (1053)
T ss_pred ccccCceEEeeeEEEEEEEecCccH
Confidence 9999999999999999999999985
No 2
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=99.95 E-value=2.2e-27 Score=163.43 Aligned_cols=93 Identities=33% Similarity=0.438 Sum_probs=82.6
Q ss_pred EEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEe-eCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 3 FATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIE-CRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 3 ~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~-~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
.+.|+|+|+++.+++++|+|||+|.+++||.+||||++++ +. +.+|||++|||+.|+.|.+. +++.+|.+|+|
T Consensus 35 ~~~v~r~~~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~~g~-~~vd~s~ltGes~pv~k~~~-----~~~~~~~i~~G 108 (230)
T PF00122_consen 35 KVTVIRDGRWQKIPSSELVPGDIIILKAGDIVPADGILLESGS-AYVDESALTGESEPVKKTPL-----PLNPGNIIFAG 108 (230)
T ss_dssp EEEEEETTEEEEEEGGGT-TTSEEEEETTEBESSEEEEEESSE-EEEECHHHHSBSSEEEESSS-----CCCTTTEE-TT
T ss_pred cEEEEeccccccchHhhccceeeeecccccccccCccceeccc-cccccccccccccccccccc-----cccccchhhcc
Confidence 3889999999999999999999999999999999999999 76 79999999999999999943 33344999999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|+++++|++||.+|+
T Consensus 109 s~v~~g~~~~~Vi~tG~~t~ 128 (230)
T PF00122_consen 109 SIVVSGWGIGVVIATGSDTK 128 (230)
T ss_dssp EEEEEEEEEEEEEE-GGGSH
T ss_pred ccccccccccccceeeeccc
Confidence 99999999999999999984
No 3
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=99.94 E-value=5.9e-27 Score=184.41 Aligned_cols=90 Identities=33% Similarity=0.514 Sum_probs=86.7
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
.+++|+|+|+++.+++++|+|||+|.+++||+|||||++++++++.+|||+|||||.|+.|.++ |.+|+|
T Consensus 92 ~~~~V~Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~vi~g~~~~VDeS~LTGES~PV~K~~~----------~~v~aG 161 (755)
T TIGR01647 92 PKARVLRDGKWQEIPASELVPGDVVRLKIGDIVPADCRLFEGDYIQVDQAALTGESLPVTKKTG----------DIAYSG 161 (755)
T ss_pred CeEEEEECCEEEEEEhhhCcCCCEEEECCCCEEeceEEEEecCceEEEcccccCCccceEeccC----------Ceeecc
Confidence 4688999999999999999999999999999999999999998679999999999999999998 999999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|++.++|++||.+|+
T Consensus 162 T~v~~G~~~~~V~~tG~~T~ 181 (755)
T TIGR01647 162 STVKQGEAEAVVTATGMNTF 181 (755)
T ss_pred CEEEccEEEEEEEEcCCccH
Confidence 99999999999999999986
No 4
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.94 E-value=6.1e-27 Score=188.50 Aligned_cols=100 Identities=59% Similarity=0.877 Sum_probs=94.0
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
.+++|+|+|+++.+++++|+|||+|.+++|++|||||+++++++|.||||+|||||.|+.|.++.....+++..|++|+|
T Consensus 141 ~~~~ViRdg~~~~I~~~~lv~GDiv~l~~Gd~IPaD~~il~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~G 220 (997)
T TIGR01106 141 QQALVIRDGEKMSINAEQVVVGDLVEVKGGDRIPADLRIISAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFS 220 (997)
T ss_pred CeeEEEECCEEEEeeHHHCCCCCEEEECCCCEEeeeEEEEEccCcEEEccccCCCCCceeccCCCcccCccccCCeEEec
Confidence 36899999999999999999999999999999999999999987899999999999999998876556678889999999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|.+.++|++||.+|+
T Consensus 221 t~v~~G~~~~~V~~tG~~T~ 240 (997)
T TIGR01106 221 TNCVEGTARGIVVNTGDRTV 240 (997)
T ss_pred cEeeeeeEEEEEEEccccch
Confidence 99999999999999999986
No 5
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.94 E-value=1.3e-26 Score=184.62 Aligned_cols=100 Identities=35% Similarity=0.523 Sum_probs=91.1
Q ss_pred cEEEEEe------CCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCC---CCCCC
Q psy2751 2 EFATVIR------QGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFT---NDNPL 72 (102)
Q Consensus 2 ~~~~v~r------~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~---~~~~~ 72 (102)
.+++|+| +|+++.+++++|+|||+|.+++||+|||||++++++++.||||+|||||.|+.|.++.. .....
T Consensus 125 ~~~~V~R~~~~~~dg~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~ 204 (867)
T TIGR01524 125 NTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVISARDLFINQSALTGESLPVEKFVEDKRARDPEIL 204 (867)
T ss_pred CeeEEEEecccCCCCeEEEEEhhcCCCCCEEEECCCCEEcccEEEEecCceEEEcccccCCCCcccccCCcccccccccc
Confidence 3578999 89999999999999999999999999999999999878999999999999999998742 22345
Q ss_pred CcccEEEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751 73 ETKNLGFFSTNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 73 ~~~~~v~~Gt~v~~g~~~~~V~~tG~~t~ 101 (102)
+..|.+|+||.+.+|.+.++|++||.+|+
T Consensus 205 ~~~n~vfaGT~v~~G~~~~~V~~tG~~T~ 233 (867)
T TIGR01524 205 ERENLCFMGTNVLSGHAQAVVLATGSSTW 233 (867)
T ss_pred ccccceecCCeEEEeEEEEEEEEEcCccH
Confidence 67899999999999999999999999985
No 6
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.94 E-value=1.1e-26 Score=185.40 Aligned_cols=100 Identities=38% Similarity=0.560 Sum_probs=91.1
Q ss_pred cEEEEEeC------CeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCC---CCCCC
Q psy2751 2 EFATVIRQ------GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFT---NDNPL 72 (102)
Q Consensus 2 ~~~~v~r~------g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~---~~~~~ 72 (102)
.+++|+|+ |+++.|++++|+|||+|.+++||+|||||++++++++.||||+|||||.|+.|.++.. .....
T Consensus 159 ~~a~ViR~g~~~~~g~~~~I~~~eLvpGDiV~l~~Gd~IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~ 238 (902)
T PRK10517 159 NTATVLRVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARDLFVAQASLTGESLPVEKFATTRQPEHSNPL 238 (902)
T ss_pred CeEEEEECCccCCCCeEEEEEHHhCCCCCEEEECCCCEEeeeEEEEEcCceEEEecCcCCCCCceecccccccccccCcc
Confidence 46889999 6899999999999999999999999999999999878999999999999999998752 22356
Q ss_pred CcccEEEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751 73 ETKNLGFFSTNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 73 ~~~~~v~~Gt~v~~g~~~~~V~~tG~~t~ 101 (102)
+..|.+|+||.+.+|++.++|++||.+|+
T Consensus 239 ~~~n~vfaGT~V~~G~~~~vV~atG~~T~ 267 (902)
T PRK10517 239 ECDTLCFMGTNVVSGTAQAVVIATGANTW 267 (902)
T ss_pred ccccceeeCceEeeeeEEEEEEEeccccH
Confidence 77899999999999999999999999985
No 7
>KOG0205|consensus
Probab=99.94 E-value=2e-27 Score=181.69 Aligned_cols=90 Identities=32% Similarity=0.473 Sum_probs=87.7
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
.++.|+|||+|.+++++.|+||||+.++.|+++|||++|++++.++||+|+|||||.|+.|+++ +.+|+|
T Consensus 134 ~KakVlRDGkw~E~eAs~lVPGDIlsik~GdIiPaDaRLl~gD~LkiDQSAlTGESLpvtKh~g----------d~vfSg 203 (942)
T KOG0205|consen 134 PKAKVLRDGKWSEQEASILVPGDILSIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKHPG----------DEVFSG 203 (942)
T ss_pred cccEEeecCeeeeeeccccccCceeeeccCCEecCccceecCCccccchhhhcCCccccccCCC----------Cceecc
Confidence 3678999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.|.+|++.++|++||.+||
T Consensus 204 STcKqGE~eaVViATg~~TF 223 (942)
T KOG0205|consen 204 STCKQGEIEAVVIATGVHTF 223 (942)
T ss_pred cccccceEEEEEEEecccee
Confidence 99999999999999999998
No 8
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.94 E-value=1.5e-26 Score=184.47 Aligned_cols=100 Identities=33% Similarity=0.434 Sum_probs=90.5
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCC----CCCCCcccE
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTN----DNPLETKNL 77 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~----~~~~~~~~~ 77 (102)
.+++|+|+|+++.|++++|+|||+|.+++||+|||||++++++++.||||+|||||.|+.|.++... ....+..|.
T Consensus 117 ~~~~ViRdg~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii~g~~l~VDES~LTGES~pv~K~~~~~~~~~~~~~~~~~n~ 196 (884)
T TIGR01522 117 PECHLIREGKLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAVDLSIDESNLTGETTPVSKVTAPIPAATNGDLAERSNI 196 (884)
T ss_pred CeeEEEECCEEEEEEHHHCccCCEEEecCCCEEeeeEEEEEcCceEEEcccccCCCcceecccccccccccccccccCce
Confidence 4688999999999999999999999999999999999999997689999999999999999887422 123466799
Q ss_pred EEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751 78 GFFSTNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 78 v~~Gt~v~~g~~~~~V~~tG~~t~ 101 (102)
+|+||.+.+|.+.++|++||.+|+
T Consensus 197 v~~GT~v~~G~~~~~V~~tG~~T~ 220 (884)
T TIGR01522 197 AFMGTLVRCGHGKGIVVGTGSNTE 220 (884)
T ss_pred EEeCCEEEeeeEEEEEEEecCccH
Confidence 999999999999999999999985
No 9
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.94 E-value=7.8e-27 Score=186.60 Aligned_cols=100 Identities=35% Similarity=0.489 Sum_probs=91.0
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCC--CCC--CCcccE
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTN--DNP--LETKNL 77 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~--~~~--~~~~~~ 77 (102)
.+++|+|+|+++.+++++|+|||+|.+++||+||||++|+++++++||||+|||||.|+.|.+.... +.+ ++..|+
T Consensus 140 ~~~~V~R~g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~l~VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~ 219 (917)
T COG0474 140 PKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSDLEVDESALTGESLPVEKQALPLTKSDAPLGLDRDNM 219 (917)
T ss_pred CceEEEeCCcEEEecHHHCCCCcEEEECCCCccccceEEEEecCceEEcccccCCCcchhccccccccccccccCCccce
Confidence 3688999999999999999999999999999999999999999889999999999999999876432 222 367899
Q ss_pred EEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751 78 GFFSTNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 78 v~~Gt~v~~g~~~~~V~~tG~~t~ 101 (102)
+|+||.+.+|++.++|++||.+|.
T Consensus 220 l~sGt~V~~G~~~giVvaTG~~T~ 243 (917)
T COG0474 220 LFSGTTVVSGRAKGIVVATGFETE 243 (917)
T ss_pred EEeCCEEEcceEEEEEEEEcCccH
Confidence 999999999999999999999985
No 10
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.94 E-value=1.5e-26 Score=185.07 Aligned_cols=100 Identities=34% Similarity=0.488 Sum_probs=90.5
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCC---CCCCCcccEE
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTN---DNPLETKNLG 78 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~---~~~~~~~~~v 78 (102)
.+++|+|+|+++.+++++|+|||+|.+++||.|||||++++++.|.+|||+|||||.|+.|.++... ..+.+.+|++
T Consensus 73 ~~~~ViRdg~~~~I~~~~Lv~GDiv~l~~Gd~IPaD~~ll~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~n~l 152 (917)
T TIGR01116 73 EHAKVLRDGRWSVIKAKDLVPGDIVELAVGDKVPADIRVLSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNML 152 (917)
T ss_pred CceEEEECCEEEEEEHHHCCCCCEEEECCCCEeeccEEEEEecceEEEcccccCCCCcccccccccCccccCccccccee
Confidence 4689999999999999999999999999999999999999997789999999999999999876321 2244667999
Q ss_pred EeeCEEeeeeEEEEEEEeCCCcc
Q psy2751 79 FFSTNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 79 ~~Gt~v~~g~~~~~V~~tG~~t~ 101 (102)
|+||.+.+|++.++|++||.+|.
T Consensus 153 ~~GT~v~~G~~~~~V~~tG~~T~ 175 (917)
T TIGR01116 153 FSGTLVVAGKARGVVVRTGMSTE 175 (917)
T ss_pred eeCCEEecceEEEEEEEeCCCCH
Confidence 99999999999999999999985
No 11
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.93 E-value=4.7e-26 Score=182.56 Aligned_cols=92 Identities=33% Similarity=0.477 Sum_probs=86.1
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
.+++|+|+|+++.+++++|+|||+|.+++||+|||||++++|+.+.||||+|||||.|+.|.++. .|++|+|
T Consensus 166 ~~~~ViRdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~li~g~~l~VdES~LTGES~pv~K~~~~--------~n~v~~G 237 (941)
T TIGR01517 166 QKIAVIRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISGLSLEIDESSITGESDPIKKGAPK--------DSFLLSG 237 (941)
T ss_pred CceEEEECCEEEEEeHHHCCCCCEEEECCCCEecccEEEEEcCcEEEEecccCCCCCcccccCCC--------CceEEeC
Confidence 36889999999999999999999999999999999999999955899999999999999998752 3789999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|++.++|++||.+|+
T Consensus 238 T~v~~G~~~~iV~~tG~~T~ 257 (941)
T TIGR01517 238 TVVNEGSGRMLVTAVGVNSF 257 (941)
T ss_pred CeEEeeEEEEEEEEeCCCcH
Confidence 99999999999999999985
No 12
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.93 E-value=2.1e-25 Score=178.27 Aligned_cols=100 Identities=32% Similarity=0.504 Sum_probs=87.9
Q ss_pred cEEEEEeC------CeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccC---------
Q psy2751 2 EFATVIRQ------GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDF--------- 66 (102)
Q Consensus 2 ~~~~v~r~------g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~--------- 66 (102)
.+++|+|+ |+++.|++++|+|||+|.+++||+|||||++++++++.||||+|||||.|+.|.+..
T Consensus 148 ~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~ 227 (903)
T PRK15122 148 TTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIESRDLFISQAVLTGEALPVEKYDTLGAVAGKSAD 227 (903)
T ss_pred CceEEEECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEcCceEEEccccCCCCcceeeecccccccccccc
Confidence 35789999 478999999999999999999999999999999988899999999999999998620
Q ss_pred ----CCCCCCCcccEEEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751 67 ----TNDNPLETKNLGFFSTNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 67 ----~~~~~~~~~~~v~~Gt~v~~g~~~~~V~~tG~~t~ 101 (102)
......+..|.+|+||.+.+|++.++|++||.+|+
T Consensus 228 ~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~ 266 (903)
T PRK15122 228 ALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTY 266 (903)
T ss_pred ccccccCCcccccceEEeCCEEEeeeEEEEEEEeccccH
Confidence 11123456799999999999999999999999985
No 13
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=99.93 E-value=2.6e-25 Score=179.83 Aligned_cols=98 Identities=24% Similarity=0.284 Sum_probs=87.7
Q ss_pred EEEEEeCCeEEEEEccCCCCCCEEEEc--CCCEeCCceEEEeeCceEEEccccCCCCccEEecccCC---CC-----CCC
Q psy2751 3 FATVIRQGEKLTVRAEDIVLGDVVDVK--FGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFT---ND-----NPL 72 (102)
Q Consensus 3 ~~~v~r~g~~~~i~~~~l~~GDii~l~--~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~---~~-----~~~ 72 (102)
.++|+|+|+|+.+++++|+|||+|.++ +|+++|||++|++|+ |.||||+|||||.|+.|.+... .+ ...
T Consensus 230 ~v~V~Rdg~~~~I~s~eLvpGDiv~l~~~~g~~iPaD~~ll~g~-~~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~ 308 (1054)
T TIGR01657 230 SVIVIRNGKWVTIASDELVPGDIVSIPRPEEKTMPCDSVLLSGS-CIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYET 308 (1054)
T ss_pred eEEEEECCEEEEEEcccCCCCCEEEEecCCCCEecceEEEEeCc-EEEecccccCCccceecccCCcccccccccccccc
Confidence 689999999999999999999999999 999999999999997 7999999999999999987532 11 123
Q ss_pred CcccEEEeeCEEee-------eeEEEEEEEeCCCcc
Q psy2751 73 ETKNLGFFSTNAVE-------GNAFSSFVLLLANNF 101 (102)
Q Consensus 73 ~~~~~v~~Gt~v~~-------g~~~~~V~~tG~~t~ 101 (102)
+..|++|+||.+.+ |.+.++|++||.+|+
T Consensus 309 ~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~T~ 344 (1054)
T TIGR01657 309 SKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFSTS 344 (1054)
T ss_pred ccceEEEcCCEEEEEecCCCCCcEEEEEEeCCcccc
Confidence 56899999999985 789999999999996
No 14
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.92 E-value=1e-24 Score=166.43 Aligned_cols=89 Identities=33% Similarity=0.426 Sum_probs=85.6
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
++++|+|+|+++.+++++|++||++.+++|+++||||++++|+. .||||+||||+.|+.|.++ +.+|+|
T Consensus 55 ~~~~v~r~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g~~-~vdes~lTGEs~pv~k~~g----------~~v~aG 123 (536)
T TIGR01512 55 DTARVLRGGSLEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTS-TVDESALTGESVPVEKAPG----------DEVFAG 123 (536)
T ss_pred CEEEEEECCEEEEEEHHHCCCCCEEEEcCCCEeecceEEEeCcE-EEEecccCCCCCcEEeCCC----------CEEEee
Confidence 46899999999999999999999999999999999999999984 9999999999999999998 899999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|.++++|+++|.+|+
T Consensus 124 t~v~~G~~~~~V~~~g~~t~ 143 (536)
T TIGR01512 124 AINLDGVLTIVVTKLPADST 143 (536)
T ss_pred eEECCceEEEEEEEeccccH
Confidence 99999999999999999985
No 15
>KOG0202|consensus
Probab=99.92 E-value=6.8e-25 Score=171.01 Aligned_cols=98 Identities=40% Similarity=0.633 Sum_probs=89.6
Q ss_pred EEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCC---CC-CCCCcccEE
Q psy2751 3 FATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFT---ND-NPLETKNLG 78 (102)
Q Consensus 3 ~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~---~~-~~~~~~~~v 78 (102)
.++|+|+|+.+++++++|+||||+.++.||+||||.|+++..++.+|||+|||||.|+.|..... +. ...++.|++
T Consensus 116 ~~~V~R~gk~~~i~A~eLVPGDiV~l~vGDkVPADlRl~e~~sl~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~Nia 195 (972)
T KOG0202|consen 116 MAHVLRSGKLQHILARELVPGDIVELKVGDKIPADLRLIEAKSLRIDESSLTGESEPVSKDTDAVPKDENADVQDKKNIA 195 (972)
T ss_pred cceEEecCcccceehhccCCCCEEEEecCCccccceeEEeeeeeeeecccccCCcccccccCccccCCCCCccccceeeE
Confidence 57899999999999999999999999999999999999998889999999999999999976542 22 234779999
Q ss_pred EeeCEEeeeeEEEEEEEeCCCc
Q psy2751 79 FFSTNAVEGNAFSSFVLLLANN 100 (102)
Q Consensus 79 ~~Gt~v~~g~~~~~V~~tG~~t 100 (102)
|+||.+..|+++++|+.||.+|
T Consensus 196 FsGT~V~~G~a~GIVi~TG~nT 217 (972)
T KOG0202|consen 196 FSGTLVVAGRAKGIVIGTGLNT 217 (972)
T ss_pred eecceeecCceeEEEEeccccc
Confidence 9999999999999999999987
No 16
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=99.91 E-value=2e-24 Score=168.05 Aligned_cols=91 Identities=24% Similarity=0.269 Sum_probs=83.1
Q ss_pred EEE-EEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 3 FAT-VIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 3 ~~~-v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
+++ |.|+|+++.+++++|++||+|.+++||+|||||++++|.. .+|||+|||||.|+.|.++. ..+.+|+|
T Consensus 105 ~a~~v~rdg~~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG~~-~VDESaLTGES~PV~K~~g~-------d~~~V~aG 176 (673)
T PRK14010 105 KARRIKQDGSYEMIDASDLKKGHIVRVATGEQIPNDGKVIKGLA-TVDESAITGESAPVIKESGG-------DFDNVIGG 176 (673)
T ss_pred eEEEEEeCCEEEEEEHHHcCCCCEEEECCCCcccCCeEEEEcce-EEecchhcCCCCceeccCCC-------ccCeeecC
Confidence 354 6799999999999999999999999999999999999985 99999999999999998871 12349999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|++.++|+++|.+|+
T Consensus 177 T~v~~G~~~i~Vta~g~~T~ 196 (673)
T PRK14010 177 TSVASDWLEVEITSEPGHSF 196 (673)
T ss_pred ceeecceEEEEEEEecccCH
Confidence 99999999999999999986
No 17
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.91 E-value=3.1e-24 Score=164.32 Aligned_cols=89 Identities=30% Similarity=0.367 Sum_probs=85.1
Q ss_pred cEEEEEeCC-eEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEe
Q psy2751 2 EFATVIRQG-EKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFF 80 (102)
Q Consensus 2 ~~~~v~r~g-~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~ 80 (102)
++++++|+| +++.+++++|++||+|.+++|+.|||||++++|+ +.+|||+||||+.|+.|.++ +.+|+
T Consensus 55 ~~~~v~r~~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi~g~-~~vdes~lTGEs~pv~k~~g----------~~v~a 123 (556)
T TIGR01525 55 STARVLQGDGSEEEVPVEELQVGDIVIVRPGERIPVDGVVISGE-SEVDESALTGESMPVEKKEG----------DEVFA 123 (556)
T ss_pred CEEEEEECCCeEEEEEHHHCCCCCEEEECCCCEeccceEEEecc-eEEeehhccCCCCCEecCCc----------CEEee
Confidence 368899996 9999999999999999999999999999999998 49999999999999999998 89999
Q ss_pred eCEEeeeeEEEEEEEeCCCcc
Q psy2751 81 STNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 81 Gt~v~~g~~~~~V~~tG~~t~ 101 (102)
||.+.+|.++++|+++|.+|+
T Consensus 124 Gt~v~~g~~~~~v~~~g~~t~ 144 (556)
T TIGR01525 124 GTINGDGSLTIRVTKLGEDST 144 (556)
T ss_pred ceEECCceEEEEEEEecccCH
Confidence 999999999999999999985
No 18
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=99.91 E-value=4.3e-24 Score=166.34 Aligned_cols=91 Identities=30% Similarity=0.302 Sum_probs=83.7
Q ss_pred EEEEEeCCe-EEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 3 FATVIRQGE-KLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 3 ~~~v~r~g~-~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
+++|+|+|+ ++.+++++|++||+|.+++||+|||||++++|.. .+|||+|||||.|+.|.++.. .+.+|+|
T Consensus 105 ~a~vir~g~~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~vieG~a-~VDESaLTGES~PV~K~~G~~-------~~~V~aG 176 (679)
T PRK01122 105 FARKLREPGAAEEVPATELRKGDIVLVEAGEIIPADGEVIEGVA-SVDESAITGESAPVIRESGGD-------FSSVTGG 176 (679)
T ss_pred eEEEEECCCEEEEEEHHHcCCCCEEEEcCCCEEEEEEEEEEccE-EEEcccccCCCCceEeCCCCc-------cCeEEec
Confidence 588999987 8999999999999999999999999999999985 999999999999999998721 1239999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|++.++|+++|.+|+
T Consensus 177 T~v~~G~~~i~Vta~g~~S~ 196 (679)
T PRK01122 177 TRVLSDWIVIRITANPGESF 196 (679)
T ss_pred eEEEeeeEEEEEEEecccCH
Confidence 99999999999999999986
No 19
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=99.91 E-value=7.4e-24 Score=162.56 Aligned_cols=89 Identities=28% Similarity=0.308 Sum_probs=83.9
Q ss_pred cEEEEEeC-CeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEe
Q psy2751 2 EFATVIRQ-GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFF 80 (102)
Q Consensus 2 ~~~~v~r~-g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~ 80 (102)
++++++|+ |+++.+++++|++||+|.+++|++|||||++++|+. .+|||+|||||.|+.|.++ +.+|+
T Consensus 91 ~~a~~~~~~~~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~-~vdes~lTGEs~pv~k~~g----------d~V~a 159 (562)
T TIGR01511 91 STATLLTKDGSIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGES-EVDESLVTGESLPVPKKVG----------DPVIA 159 (562)
T ss_pred CEEEEEECCCeEEEEEHHHCCCCCEEEECCCCEecCceEEEECce-EEehHhhcCCCCcEEcCCC----------CEEEe
Confidence 46778875 677999999999999999999999999999999995 9999999999999999999 89999
Q ss_pred eCEEeeeeEEEEEEEeCCCcc
Q psy2751 81 STNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 81 Gt~v~~g~~~~~V~~tG~~t~ 101 (102)
||.+.+|.+.++|+++|.+|+
T Consensus 160 Gt~~~~g~~~~~v~~~g~~t~ 180 (562)
T TIGR01511 160 GTVNGTGSLVVRATATGEDTT 180 (562)
T ss_pred eeEECCceEEEEEEEecCCCh
Confidence 999999999999999999985
No 20
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=99.90 E-value=1.1e-23 Score=165.75 Aligned_cols=89 Identities=30% Similarity=0.364 Sum_probs=85.4
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
++++++|+|+++.+++++|++||+|.+++|++||+||++++|+. .+|||+|||||.|+.|.++ +.+|+|
T Consensus 243 ~~a~vir~g~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g~~-~vdes~lTGEs~Pv~k~~G----------d~V~aG 311 (741)
T PRK11033 243 ETATRLRDGEREEVAIADLRPGDVIEVAAGGRLPADGKLLSPFA-SFDESALTGESIPVERATG----------EKVPAG 311 (741)
T ss_pred CEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEecceEEEECcE-EeecccccCCCCCEecCCC----------CeeccC
Confidence 46889999999999999999999999999999999999999985 9999999999999999999 899999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|.+.+.|+++|.+|+
T Consensus 312 t~~~~G~~~i~V~~~g~~s~ 331 (741)
T PRK11033 312 ATSVDRLVTLEVLSEPGASA 331 (741)
T ss_pred CEEcCceEEEEEEeccccCH
Confidence 99999999999999999985
No 21
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=99.90 E-value=1.4e-23 Score=163.31 Aligned_cols=91 Identities=30% Similarity=0.313 Sum_probs=82.7
Q ss_pred EEEEEe-CCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 3 FATVIR-QGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 3 ~~~v~r-~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
.++++| +|+++.+++++|++||+|.+++||+||+||++++|. +.+|||+|||||.|+.|.++... ..+|+|
T Consensus 106 ~a~vlr~dg~~~~V~~~~L~~GDiV~V~~Gd~IPaDG~vieG~-~~VDESaLTGES~PV~K~~g~~~-------~~V~aG 177 (675)
T TIGR01497 106 FAKLLRDDGAIDKVPADQLKKGDIVLVEAGDVIPCDGEVIEGV-ASVDESAITGESAPVIKESGGDF-------ASVTGG 177 (675)
T ss_pred eEEEEeeCCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEcc-EEEEcccccCCCCceeecCCCCc-------ceeecC
Confidence 367775 899999999999999999999999999999999998 59999999999999999987311 139999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|++.++|+++|.+|+
T Consensus 178 T~v~~G~~~i~Vt~~g~~S~ 197 (675)
T TIGR01497 178 TRILSDWLVVECTANPGETF 197 (675)
T ss_pred cEEEeeEEEEEEEEecccCH
Confidence 99999999999999999986
No 22
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.90 E-value=1.3e-23 Score=166.88 Aligned_cols=89 Identities=24% Similarity=0.296 Sum_probs=85.3
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
++++++|+|+++.++.++|++||+|.+++|++||+||++++|+ +.+|||+|||||.|+.|.++ +.+|+|
T Consensus 323 ~~a~~~~~~~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~-~~vdeS~lTGEs~pv~k~~g----------d~V~aG 391 (834)
T PRK10671 323 PTARVVTDEGEKSVPLADVQPGMLLRLTTGDRVPVDGEITQGE-AWLDEAMLTGEPIPQQKGEG----------DSVHAG 391 (834)
T ss_pred CEEEEEeCCcEEEEEHHHcCCCCEEEEcCCCEeeeeEEEEEce-EEEeehhhcCCCCCEecCCC----------CEEEec
Confidence 4678899999999999999999999999999999999999998 59999999999999999999 899999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|.+.+.|+++|.+|+
T Consensus 392 t~~~~G~~~~~v~~~g~~t~ 411 (834)
T PRK10671 392 TVVQDGSVLFRASAVGSHTT 411 (834)
T ss_pred ceecceeEEEEEEEEcCcCh
Confidence 99999999999999999985
No 23
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=99.88 E-value=1.2e-22 Score=153.67 Aligned_cols=88 Identities=35% Similarity=0.432 Sum_probs=83.7
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
++++|+|+| ++.+++++|++||+|.+++||++||||++++|+ +.||||+|||||.|+.|.++ +.+|+|
T Consensus 35 ~~~~v~r~g-~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g~-~~vdes~LTGEs~pv~k~~g----------~~v~~g 102 (499)
T TIGR01494 35 ETVTVLRNG-WKEIPASDLVPGDIVLVKSGEIVPADGVLLSGS-CFVDESNLTGESVPVLKTAG----------DAVFAG 102 (499)
T ss_pred CeEEEEECC-eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEcc-EEEEcccccCCCCCeeeccC----------CccccC
Confidence 478999999 999999999999999999999999999999997 69999999999999999998 889999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
+.+.+|...+.|.++|.+|+
T Consensus 103 s~~~~G~~~~~v~~~~~~s~ 122 (499)
T TIGR01494 103 TYVFNGTLIVVVSATGPNTF 122 (499)
T ss_pred cEEeccEEEEEEEEeccccH
Confidence 99999999999999998874
No 24
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.2e-22 Score=158.66 Aligned_cols=89 Identities=34% Similarity=0.449 Sum_probs=83.4
Q ss_pred cEEEEEe-CCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEe
Q psy2751 2 EFATVIR-QGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFF 80 (102)
Q Consensus 2 ~~~~v~r-~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~ 80 (102)
+++++++ ||+++.+++++|++||++.++|||+||+||++++|++ .+|||+|||||.|+.|.++ +.+|+
T Consensus 211 ~~A~~~~~~~~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s-~vDeS~iTGEs~PV~k~~G----------d~V~a 279 (713)
T COG2217 211 KTATVVRGDGEEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSS-SVDESMLTGESLPVEKKPG----------DEVFA 279 (713)
T ss_pred CEEEEEecCCcEEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcE-EeecchhhCCCCCEecCCC----------CEEee
Confidence 4566666 4558999999999999999999999999999999997 9999999999999999999 99999
Q ss_pred eCEEeeeeEEEEEEEeCCCcc
Q psy2751 81 STNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 81 Gt~v~~g~~~~~V~~tG~~t~ 101 (102)
||.+.+|.....|+++|.+|+
T Consensus 280 GtiN~~G~l~i~vt~~~~dt~ 300 (713)
T COG2217 280 GTVNLDGSLTIRVTRVGADTT 300 (713)
T ss_pred eEEECCccEEEEEEecCccCH
Confidence 999999999999999999985
No 25
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=99.88 E-value=7.2e-23 Score=165.80 Aligned_cols=100 Identities=22% Similarity=0.320 Sum_probs=88.2
Q ss_pred cEEEEEeC-CeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCc----eEEEccccCCCCccEEecccCC---------
Q psy2751 2 EFATVIRQ-GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRG----FKVDNSSLTGESEPQSRGVDFT--------- 67 (102)
Q Consensus 2 ~~~~v~r~-g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~----~~vd~s~ltGEs~pv~k~~~~~--------- 67 (102)
++++|+|+ |+++.+++++|+|||+|.+++||.+|||++++++++ |.+|+|+||||+.|+.|.+...
T Consensus 85 ~~~~v~~~~~~~~~i~~~~l~~GDiv~l~~g~~iPaD~~ll~ss~~~g~~~v~~s~l~GEs~~~~k~~~~~~~~~~~~~~ 164 (1057)
T TIGR01652 85 RLTEVLEGHGQFVEIPWKDLRVGDIVKVKKDERIPADLLLLSSSEPDGVCYVETANLDGETNLKLRQALEETQKMLDEDD 164 (1057)
T ss_pred cEEEEECCCCcEEEeeeecccCCCEEEEcCCCcccceEEEEeccCCCceEEEEeeccCCeecceEeecchhhhccCChhh
Confidence 46889997 799999999999999999999999999999999654 8999999999999999975310
Q ss_pred -----------------------------CCCCCCcccEEEeeCEEee-eeEEEEEEEeCCCcc
Q psy2751 68 -----------------------------NDNPLETKNLGFFSTNAVE-GNAFSSFVLLLANNF 101 (102)
Q Consensus 68 -----------------------------~~~~~~~~~~v~~Gt~v~~-g~~~~~V~~tG~~t~ 101 (102)
...+++.+|++|+||.+.+ |+++|+|++||++|.
T Consensus 165 ~~~~~~~i~~~~p~~~l~~F~G~~~~~~~~~~~l~~~N~l~rGs~l~nt~~~~gvVvyTG~~Tk 228 (1057)
T TIGR01652 165 IKNFSGEIECEQPNASLYSFQGNMTINGDRQYPLSPDNILLRGCTLRNTDWVIGVVVYTGHDTK 228 (1057)
T ss_pred HhhceEEEEEcCCCCcceEEEEEEEECCCCcccCCHHHhHhcCCEecCCCeEEEEEEEEchhhh
Confidence 1135678899999999988 999999999999983
No 26
>KOG0204|consensus
Probab=99.87 E-value=3.9e-22 Score=155.91 Aligned_cols=92 Identities=33% Similarity=0.460 Sum_probs=85.8
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
.++.|+|+|+.++++..+|++||++.++-||.+||||++++|.+|.+|||++||||.++.|.+.. .-++++|
T Consensus 220 ~k~~ViR~G~r~~isI~diVVGDIv~lk~GDqvPADGvli~gn~L~iDESSlTGESd~v~k~~~~--------dPfLlSG 291 (1034)
T KOG0204|consen 220 IKFQVIRGGRRQQISIYDLVVGDIVQLKIGDQVPADGVLIQGNSLKIDESSLTGESDHVQKSLDK--------DPFLLSG 291 (1034)
T ss_pred eEEEEEECCEEEEEEEeeeeeccEEEeecCCccccceEEEeccceeEecccccCCCcceeccCCC--------CCeEeec
Confidence 36789999999999999999999999999999999999999988999999999999999997641 2589999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|++++|.+.++|+++|.+|.
T Consensus 292 Tkv~eGsgkMlVTaVGmnt~ 311 (1034)
T KOG0204|consen 292 TKVMEGSGKMLVTAVGMNTQ 311 (1034)
T ss_pred ceeecCcceEEEEEeeecch
Confidence 99999999999999999985
No 27
>KOG0208|consensus
Probab=99.86 E-value=3.5e-21 Score=152.12 Aligned_cols=99 Identities=25% Similarity=0.290 Sum_probs=87.0
Q ss_pred EEEEEeCCeEEEEEccCCCCCCEEEEcC-CCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCC---------CCC
Q psy2751 3 FATVIRQGEKLTVRAEDIVLGDVVDVKF-GDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTND---------NPL 72 (102)
Q Consensus 3 ~~~v~r~g~~~~i~~~~l~~GDii~l~~-g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~---------~~~ 72 (102)
+|+|+|+|.|+.+.+++|+|||++.+.+ +-..|||++|++|+ |.+|||+|||||.|+.|.+.+... ...
T Consensus 251 ~V~V~R~g~~~ti~S~eLVPGDil~i~~~~~~~PcDa~Li~g~-civNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~ 329 (1140)
T KOG0208|consen 251 PVTVIRDGFWETVDSSELVPGDILYIPPPGKIMPCDALLISGD-CIVNESMLTGESVPVTKTPLPMGTDSLDSITISMST 329 (1140)
T ss_pred eEEEEECCEEEEEeccccccccEEEECCCCeEeecceEEEeCc-EEeecccccCCcccccccCCccccccCcCeeechhh
Confidence 6899999999999999999999999987 88899999999999 899999999999999999874111 123
Q ss_pred CcccEEEeeCEEee------eeEEEEEEEeCCCccC
Q psy2751 73 ETKNLGFFSTNAVE------GNAFSSFVLLLANNFT 102 (102)
Q Consensus 73 ~~~~~v~~Gt~v~~------g~~~~~V~~tG~~t~~ 102 (102)
..+|.+|+||.+++ +.+.++|++||.+|.+
T Consensus 330 ~~rh~lfcGT~vlq~r~~~g~~v~a~V~RTGF~T~K 365 (1140)
T KOG0208|consen 330 NSRHTLFCGTKVLQARAYLGGPVLAMVLRTGFSTTK 365 (1140)
T ss_pred cCcceeeccceEEEeecCCCCceEEEEEeccccccc
Confidence 67899999999976 4489999999999864
No 28
>KOG0203|consensus
Probab=99.85 E-value=1.5e-21 Score=152.48 Aligned_cols=100 Identities=58% Similarity=0.879 Sum_probs=96.5
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
..++|+|+|....+..++|++||++.++.|+++|||.+++++..|++|+|+|||||+|..+.+...+.++++..|+-|.+
T Consensus 163 ~~~~ViRdg~k~~i~~eelVvGD~v~vk~GdrVPADiRiis~~g~~vdnsslTGesEP~~~~~~~t~~~~~Et~Ni~f~s 242 (1019)
T KOG0203|consen 163 QQALVIRDGEKMTINAEELVVGDLVEVKGGDRVPADIRIISATGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFS 242 (1019)
T ss_pred hhheeeecceeEEechhhcccccceeeccCCcccceeEEEEecceeEeccccccccCCccCCccccccCchhheeeeeee
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|.++++|++||.+|.
T Consensus 243 t~~veG~~~givi~tGd~Tv 262 (1019)
T KOG0203|consen 243 TNCVEGTGRGIVIATGDRTV 262 (1019)
T ss_pred eEEecceEEEEEEecCCceE
Confidence 99999999999999999984
No 29
>PLN03190 aminophospholipid translocase; Provisional
Probab=99.82 E-value=5.5e-20 Score=150.08 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=86.7
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCc----eEEEccccCCCCccEEecccCC----------
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRG----FKVDNSSLTGESEPQSRGVDFT---------- 67 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~----~~vd~s~ltGEs~pv~k~~~~~---------- 67 (102)
++++|+|+|+++.+++++|++||+|.+++||++|||+++++++. |+||+|+||||+.|+.|.+...
T Consensus 171 ~~~~v~~~~~~~~i~~~~i~vGDiv~v~~ge~iPaD~~ll~Ss~~~G~~~Vdts~LdGEt~~k~k~~~~~~~~~~~~~~~ 250 (1178)
T PLN03190 171 RLAWVLVDDQFQEKKWKDIRVGEIIKIQANDTLPCDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETLSKIPEKEK 250 (1178)
T ss_pred cEEEEEECCeEEEEeHHHCCCCCEEEECCCCEeeeeEEEEeccCCCceEEEEccccCCeeeeeEecccchhhhcchhhhh
Confidence 46889999999999999999999999999999999999999443 7999999999999999976411
Q ss_pred -------------------------CCCCCCcccEEEeeCEEeee-eEEEEEEEeCCCcc
Q psy2751 68 -------------------------NDNPLETKNLGFFSTNAVEG-NAFSSFVLLLANNF 101 (102)
Q Consensus 68 -------------------------~~~~~~~~~~v~~Gt~v~~g-~~~~~V~~tG~~t~ 101 (102)
...+++.+|++++||.+.+. +++|+|++||++|-
T Consensus 251 ~~~~i~~e~Pn~~l~~F~G~i~~~~~~~~l~~~n~llRG~~LrnT~~i~GvVVYTG~dTK 310 (1178)
T PLN03190 251 INGLIKCEKPNRNIYGFQANMEVDGKRLSLGPSNIILRGCELKNTAWAIGVAVYCGRETK 310 (1178)
T ss_pred ceEEEEEeCCCccceeEEEEEEECCCcccCCccceeeccceecCCceEEEEEEEechhhh
Confidence 01256778999999999665 69999999999983
No 30
>KOG0207|consensus
Probab=99.79 E-value=1.9e-19 Score=141.65 Aligned_cols=88 Identities=25% Similarity=0.381 Sum_probs=83.0
Q ss_pred EEEEEeCCe-EEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 3 FATVIRQGE-KLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 3 ~~~v~r~g~-~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
++.++.+|+ +++|+.+.|++||++.+.||++||+||++++|+. .||||.+|||++|+.|+++ +.+.+|
T Consensus 379 ~a~ii~~g~~e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~Gss-~VDEs~iTGEs~PV~Kk~g----------s~ViaG 447 (951)
T KOG0207|consen 379 KATIIEDGSEEKEIPVDLVQVGDIVKVKPGEKIPVDGVVVDGSS-EVDESLITGESMPVPKKKG----------STVIAG 447 (951)
T ss_pred cceEeecCCcceEeeeeeeccCCEEEECCCCccccccEEEeCce-eechhhccCCceecccCCC----------Ceeeee
Confidence 566777775 7899999999999999999999999999999995 9999999999999999999 999999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|.....++++|.+|.
T Consensus 448 siN~nG~l~VkaT~~g~dtt 467 (951)
T KOG0207|consen 448 SINLNGTLLVKATKVGGDTT 467 (951)
T ss_pred eecCCceEEEEEEeccccch
Confidence 99999999999999999974
No 31
>KOG0209|consensus
Probab=99.71 E-value=5.2e-17 Score=127.41 Aligned_cols=99 Identities=21% Similarity=0.265 Sum_probs=83.9
Q ss_pred EEEEEeCCeEEEEEccCCCCCCEEEEcC---CCEeCCceEEEeeCceEEEccccCCCCccEEecccCCC--C-----CCC
Q psy2751 3 FATVIRQGEKLTVRAEDIVLGDVVDVKF---GDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTN--D-----NPL 72 (102)
Q Consensus 3 ~~~v~r~g~~~~i~~~~l~~GDii~l~~---g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~--~-----~~~ 72 (102)
.+.|+|+++|+.+..++|.|||++.+.. ...+|||..|+.|+ |.||||+|||||.|.-|.+.... + ...
T Consensus 254 ~I~v~R~kKW~~l~seeLlPgDvVSI~r~~ed~~vPCDllLL~Gs-ciVnEaMLtGESvPl~KE~Ie~~~~d~~ld~~~d 332 (1160)
T KOG0209|consen 254 TINVYRNKKWVKLMSEELLPGDVVSIGRGAEDSHVPCDLLLLRGS-CIVNEAMLTGESVPLMKESIELRDSDDILDIDRD 332 (1160)
T ss_pred EEEEEecCcceeccccccCCCceEEeccCcccCcCCceEEEEecc-eeechhhhcCCCccccccccccCChhhhcccccc
Confidence 4678999999999999999999999965 34699999999999 79999999999999999885321 1 123
Q ss_pred CcccEEEeeCEEee-------------eeEEEEEEEeCCCccC
Q psy2751 73 ETKNLGFFSTNAVE-------------GNAFSSFVLLLANNFT 102 (102)
Q Consensus 73 ~~~~~v~~Gt~v~~-------------g~~~~~V~~tG~~t~~ 102 (102)
++.+++|.||++.+ |-+.+.|++||.+|-|
T Consensus 333 ~k~hVlfGGTkivQht~p~~~slk~pDggc~a~VlrTGFeTSQ 375 (1160)
T KOG0209|consen 333 DKLHVLFGGTKIVQHTPPKKASLKTPDGGCVAYVLRTGFETSQ 375 (1160)
T ss_pred cceEEEEcCceEEEecCCccccccCCCCCeEEEEEeccccccC
Confidence 46679999999964 5689999999999964
No 32
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=99.63 E-value=3.8e-16 Score=117.94 Aligned_cols=88 Identities=28% Similarity=0.290 Sum_probs=78.9
Q ss_pred EEeC-CeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEeeCEE
Q psy2751 6 VIRQ-GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFSTNA 84 (102)
Q Consensus 6 v~r~-g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~Gt~v 84 (102)
.+++ |+++.+++.+|..||+|++..||.||+||.+++|.+ .||||++||||.|+-|.++-. ..-+-.||.+
T Consensus 108 ~l~~~g~~~~v~st~Lk~gdiV~V~age~IP~DGeVIeG~a-sVdESAITGESaPViresGgD-------~ssVtGgT~v 179 (681)
T COG2216 108 LLRADGSIEMVPATELKKGDIVLVEAGEIIPSDGEVIEGVA-SVDESAITGESAPVIRESGGD-------FSSVTGGTRV 179 (681)
T ss_pred HhcCCCCeeeccccccccCCEEEEecCCCccCCCeEEeeee-ecchhhccCCCcceeeccCCC-------cccccCCcEE
Confidence 4444 899999999999999999999999999999999997 999999999999999998732 2347789999
Q ss_pred eeeeEEEEEEEeCCCcc
Q psy2751 85 VEGNAFSSFVLLLANNF 101 (102)
Q Consensus 85 ~~g~~~~~V~~tG~~t~ 101 (102)
.+.+.+..+++...+||
T Consensus 180 ~SD~l~irita~pG~sF 196 (681)
T COG2216 180 LSDWLKIRITANPGETF 196 (681)
T ss_pred eeeeEEEEEEcCCCccH
Confidence 99999999999888877
No 33
>KOG0210|consensus
Probab=99.48 E-value=1.7e-13 Score=106.62 Aligned_cols=96 Identities=24% Similarity=0.316 Sum_probs=79.8
Q ss_pred EEE-eCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCc----eEEEccccCCCCccEEeccc--------------
Q psy2751 5 TVI-RQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRG----FKVDNSSLTGESEPQSRGVD-------------- 65 (102)
Q Consensus 5 ~v~-r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~----~~vd~s~ltGEs~pv~k~~~-------------- 65 (102)
+++ |+|.... +++++++||+|.++.+++||||.++|..++ |++-+--|+||+.++.|-+-
T Consensus 166 ~~ltr~~~~~~-~Ss~i~vGDvi~v~K~~RVPADmilLrTsd~sg~~FiRTDQLDGETDWKLrl~vp~tQ~l~~~~el~~ 244 (1051)
T KOG0210|consen 166 TKLTRDGTRRE-PSSDIKVGDVIIVHKDERVPADMILLRTSDKSGSCFIRTDQLDGETDWKLRLPVPRTQHLTEDSELME 244 (1051)
T ss_pred eeeccCCcccc-cccccccccEEEEecCCcCCcceEEEEccCCCCceEEeccccCCcccceeeccchhhccCCcccchhe
Confidence 344 4554433 899999999999999999999999999654 89999999999999888653
Q ss_pred -----------------------CCCCCCCCcccEEEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751 66 -----------------------FTNDNPLETKNLGFFSTNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 66 -----------------------~~~~~~~~~~~~v~~Gt~v~~g~~~~~V~~tG~~t~ 101 (102)
.+...+++-+|.+.++|.+.+|.++++|++||.+|-
T Consensus 245 i~v~Ae~P~kdIh~F~Gt~~~~d~~~~~~LsventLWanTVvAs~t~~gvVvYTG~dtR 303 (1051)
T KOG0210|consen 245 ISVYAEKPQKDIHSFVGTFTITDSDKPESLSVENTLWANTVVASGTAIGVVVYTGRDTR 303 (1051)
T ss_pred EEEeccCcchhhHhhEEEEEEecCCCCCcccccceeeeeeeEecCcEEEEEEEecccHH
Confidence 011236788999999999999999999999999874
No 34
>KOG0206|consensus
Probab=99.31 E-value=5.8e-12 Score=102.66 Aligned_cols=100 Identities=19% Similarity=0.279 Sum_probs=85.1
Q ss_pred cEEEEEeCCe-EEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCc----eEEEccccCCCCccEEecccCC---------
Q psy2751 2 EFATVIRQGE-KLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRG----FKVDNSSLTGESEPQSRGVDFT--------- 67 (102)
Q Consensus 2 ~~~~v~r~g~-~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~----~~vd~s~ltGEs~pv~k~~~~~--------- 67 (102)
.+++|.|++. +....|+++.+||+|.+..++.+|||.++|.++. |++++++|+||+..+.|+....
T Consensus 115 ~~~~v~~~~~~~~~~~wk~~~vGd~v~v~~~~~~paD~llLsss~~~~~cyveT~nLDGEtnLK~k~~l~~~~~~~~~~~ 194 (1151)
T KOG0206|consen 115 RKVEVLRGDGCFVEKKWKDVRVGDIVRVEKDEFVPADLLLLSSSDEDGICYVETANLDGETNLKVKQALECTSKLDSEDS 194 (1151)
T ss_pred ceeEEecCCceeeeeccceeeeeeEEEeccCCccccceEEecCCCCCceeEEEEeecCCccccceeeehhhhhccccccc
Confidence 4678888643 8999999999999999999999999999999875 9999999999999998865310
Q ss_pred ---------------------------CCC-CCCcccEEEeeCEEeeee-EEEEEEEeCCCcc
Q psy2751 68 ---------------------------NDN-PLETKNLGFFSTNAVEGN-AFSSFVLLLANNF 101 (102)
Q Consensus 68 ---------------------------~~~-~~~~~~~v~~Gt~v~~g~-~~~~V~~tG~~t~ 101 (102)
... |+..+|++++|+.+.+.+ ++++|+.+|++|.
T Consensus 195 ~~~~~~~i~cE~p~~~ly~f~g~l~~~~~~~pl~~~~~Llrg~~lrNT~~v~G~vv~tG~dtK 257 (1151)
T KOG0206|consen 195 LKNFKGWIECEDPNANLYTFVGNLELQGQIYPLSPDNLLLRGSRLRNTEWVYGVVVFTGHDTK 257 (1151)
T ss_pred ccccCCceEEcCCcccHhhhhhheeeccCCCCCcHHHcccCCceeccCcEEEEEEEEcCCcch
Confidence 011 778899999999997665 8899999999984
No 35
>KOG4383|consensus
Probab=88.66 E-value=0.24 Score=40.31 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=34.1
Q ss_pred EEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEee
Q psy2751 6 VIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIEC 43 (102)
Q Consensus 6 v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~ 43 (102)
-+|||+..++|..-|+.||||-++||+.-||.++=+++
T Consensus 160 afRDGhlm~lP~~LLVeGDiIa~RPGQeafan~~g~~d 197 (1354)
T KOG4383|consen 160 AFRDGHLMELPRILLVEGDIIAFRPGQEAFANCEGFDD 197 (1354)
T ss_pred HhccCeeeecceeEEEeccEEEecCCccccccccccCC
Confidence 46999999999999999999999999999998765554
No 36
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=83.41 E-value=0.5 Score=28.01 Aligned_cols=19 Identities=53% Similarity=0.739 Sum_probs=15.2
Q ss_pred ccCCCCCCEEEE-cCCCEeC
Q psy2751 17 AEDIVLGDVVDV-KFGDRIP 35 (102)
Q Consensus 17 ~~~l~~GDii~l-~~g~~vP 35 (102)
-.+|.+||.|.+ ++||.||
T Consensus 47 ~~~i~~Gd~V~V~raGdVIP 66 (82)
T PF03120_consen 47 ELDIRIGDTVLVTRAGDVIP 66 (82)
T ss_dssp HTT-BBT-EEEEEEETTTEE
T ss_pred HcCCCCCCEEEEEECCCccc
Confidence 468999999999 7999999
No 37
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=81.23 E-value=7.3 Score=22.10 Aligned_cols=31 Identities=32% Similarity=0.289 Sum_probs=21.8
Q ss_pred EEEEEeCCeEEEEEc---cCCCCCCEEEEcCCCE
Q psy2751 3 FATVIRQGEKLTVRA---EDIVLGDVVDVKFGDR 33 (102)
Q Consensus 3 ~~~v~r~g~~~~i~~---~~l~~GDii~l~~g~~ 33 (102)
.+.|-..|..+++.. .++.+||.+++..|--
T Consensus 18 ~A~v~~~G~~~~V~~~lv~~v~~Gd~VLVHaG~A 51 (68)
T PF01455_consen 18 MAVVDFGGVRREVSLALVPDVKVGDYVLVHAGFA 51 (68)
T ss_dssp EEEEEETTEEEEEEGTTCTSB-TT-EEEEETTEE
T ss_pred EEEEEcCCcEEEEEEEEeCCCCCCCEEEEecChh
Confidence 455667788888764 5688999999999843
No 38
>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.
Probab=81.06 E-value=3.1 Score=25.75 Aligned_cols=27 Identities=37% Similarity=0.338 Sum_probs=22.4
Q ss_pred EEEEEeCCeEEEEEccCCCCCCEEEEc
Q psy2751 3 FATVIRQGEKLTVRAEDIVLGDVVDVK 29 (102)
Q Consensus 3 ~~~v~r~g~~~~i~~~~l~~GDii~l~ 29 (102)
+.++.+++++.++++++|.+||.+.+.
T Consensus 73 ~~~~~~~~~~~~~~a~~l~~gd~l~~~ 99 (136)
T cd00081 73 LLFVLEDGELKWVFASDLKPGDYVLVP 99 (136)
T ss_pred EEEEEeCCeEEEEEHHHCCCCCEEEEc
Confidence 455666667889999999999999997
No 39
>PRK11507 ribosome-associated protein; Provisional
Probab=79.42 E-value=3.4 Score=23.75 Aligned_cols=26 Identities=27% Similarity=0.188 Sum_probs=22.1
Q ss_pred EEEeCCeEEEEEccCCCCCCEEEEcC
Q psy2751 5 TVIRQGEKLTVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 5 ~v~r~g~~~~i~~~~l~~GDii~l~~ 30 (102)
.|.-||+...-.-..|.+||+|.+..
T Consensus 38 ~V~VNGeve~rRgkKl~~GD~V~~~g 63 (70)
T PRK11507 38 QVKVDGAVETRKRCKIVAGQTVSFAG 63 (70)
T ss_pred ceEECCEEecccCCCCCCCCEEEECC
Confidence 46778888888899999999999854
No 40
>PF15584 Imm44: Immunity protein 44
Probab=78.26 E-value=1.1 Score=27.12 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCEeCCceEE
Q psy2751 22 LGDVVDVKFGDRIPADIRI 40 (102)
Q Consensus 22 ~GDii~l~~g~~vPaD~~l 40 (102)
+.+...+++|++||+||+-
T Consensus 13 ~~~~~~I~SG~~iP~~GIw 31 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGIW 31 (94)
T ss_pred CCCCCEEecCCCcccCCeE
Confidence 4566788999999999997
No 41
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=74.75 E-value=8.9 Score=20.45 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=26.4
Q ss_pred cEEEEE-eCCeEEEEEc-cCCCCCCEEEEcCCCEeCC
Q psy2751 2 EFATVI-RQGEKLTVRA-EDIVLGDVVDVKFGDRIPA 36 (102)
Q Consensus 2 ~~~~v~-r~g~~~~i~~-~~l~~GDii~l~~g~~vPa 36 (102)
+++.|+ .+|++..++. ....+||.|.+...+..+.
T Consensus 6 ~~aiVlT~dGeF~~ik~~~~~~vG~eI~~~~~~~~~~ 42 (56)
T PF12791_consen 6 KYAIVLTPDGEFIKIKRKPGMEVGQEIEFDEKDIINK 42 (56)
T ss_pred CEEEEEcCCCcEEEEeCCCCCcccCEEEEechhhccc
Confidence 356666 5789988875 3699999999988776653
No 42
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=74.09 E-value=2.7 Score=36.66 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=26.6
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCC
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFG 31 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g 31 (102)
+++.++++|+|.+..+.+|.+||.+.+...
T Consensus 988 HPVLv~~~Gk~i~K~A~dlK~GD~vvIPK~ 1017 (1627)
T PRK14715 988 HPVMVYENGKFIKKRAMDVKEGDLMLIPKL 1017 (1627)
T ss_pred CceEEeccCccceeehhhcCcCceeecccc
Confidence 467888999999999999999999999754
No 43
>PRK14898 DNA-directed RNA polymerase subunit A''; Provisional
Probab=73.20 E-value=5.8 Score=33.02 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=27.8
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCc
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPAD 37 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD 37 (102)
+++.++++|++.++..++|.+||.|.+.. .+|.+
T Consensus 169 H~~~v~~~g~~~~~~a~~l~~GD~i~~~~--~~~~~ 202 (858)
T PRK14898 169 HSFVTRKDNEVIPVEGSELKIGDWLPVVR--SLPAN 202 (858)
T ss_pred CeEEEeeCCeEEEeeHHhCCCCCEEeeee--ecccc
Confidence 45678899999999999999999997754 56654
No 44
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=73.08 E-value=6.2 Score=24.27 Aligned_cols=26 Identities=19% Similarity=0.666 Sum_probs=20.2
Q ss_pred eCCeEEEEEccCCCCCCEEEEcCCCEe
Q psy2751 8 RQGEKLTVRAEDIVLGDVVDVKFGDRI 34 (102)
Q Consensus 8 r~g~~~~i~~~~l~~GDii~l~~g~~v 34 (102)
=+|+.. -++.++.+||+|.|..|...
T Consensus 38 vNG~~a-KpS~~VK~GD~l~i~~~~~~ 63 (100)
T COG1188 38 VNGQRA-KPSKEVKVGDILTIRFGNKE 63 (100)
T ss_pred ECCEEc-ccccccCCCCEEEEEeCCcE
Confidence 345444 68999999999999888763
No 45
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=72.39 E-value=2.2 Score=24.14 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=12.5
Q ss_pred EEeCCeEEEEEccCCCCCCEEEE
Q psy2751 6 VIRQGEKLTVRAEDIVLGDVVDV 28 (102)
Q Consensus 6 v~r~g~~~~i~~~~l~~GDii~l 28 (102)
|.-||+...-.-..|.+||+|.+
T Consensus 35 V~VNGe~e~rrg~Kl~~GD~V~~ 57 (65)
T PF13275_consen 35 VKVNGEVETRRGKKLRPGDVVEI 57 (65)
T ss_dssp HEETTB----SS----SSEEEEE
T ss_pred eEECCEEccccCCcCCCCCEEEE
Confidence 45678888888899999999999
No 46
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=71.64 E-value=3.4 Score=33.41 Aligned_cols=30 Identities=43% Similarity=0.612 Sum_probs=24.0
Q ss_pred EEccCCCCCCEEEE-cCCCEeC-CceEEEeeC
Q psy2751 15 VRAEDIVLGDVVDV-KFGDRIP-ADIRIIECR 44 (102)
Q Consensus 15 i~~~~l~~GDii~l-~~g~~vP-aD~~ll~~~ 44 (102)
|.-.+|.+||.|.+ ++||.|| +++++.+-.
T Consensus 363 I~rkdIrIGDtV~V~kAGdVIP~V~~Vv~e~R 394 (667)
T COG0272 363 IKRKDIRIGDTVVVRKAGDVIPQVVGVVLEKR 394 (667)
T ss_pred HHhcCCCCCCEEEEEecCCCCcceeeeecccC
Confidence 44589999999999 6999999 666666543
No 47
>PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus; InterPro: IPR009640 This entry represents the C terminus of phage 933W tail fibre protein. This domain is found together with conserved RLGP motif. The characteristics of the protein distribution suggest prophage matches.
Probab=69.41 E-value=6.3 Score=21.90 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=24.3
Q ss_pred CCCCCEEEEcCCCEeC-CceEEEeeCceEEE
Q psy2751 20 IVLGDVVDVKFGDRIP-ADIRIIECRGFKVD 49 (102)
Q Consensus 20 l~~GDii~l~~g~~vP-aD~~ll~~~~~~vd 49 (102)
|-|+||+...++.++| -||.++.+-. +++
T Consensus 5 lgpa~ile~nsnG~~P~tdg~liT~lt-fL~ 34 (64)
T PF06820_consen 5 LGPADILESNSNGWFPETDGRLITGLT-FLD 34 (64)
T ss_pred cCchheeeecCCccccCCCcceEeeeE-Eec
Confidence 6789999999999999 7889988874 554
No 48
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=69.16 E-value=3.9 Score=25.97 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=16.8
Q ss_pred EEEEccCCCCCCEEEEcCCCEeCCceE
Q psy2751 13 LTVRAEDIVLGDVVDVKFGDRIPADIR 39 (102)
Q Consensus 13 ~~i~~~~l~~GDii~l~~g~~vPaD~~ 39 (102)
.++++++|.+||.+.-..|....+..+
T Consensus 70 gWv~A~~L~~GD~L~~~~G~~~~v~~i 96 (130)
T PF07591_consen 70 GWVEAEDLKVGDRLLTADGSWVTVTSI 96 (130)
T ss_dssp --EEGGG--TTSEEEEE-SSEEEEE--
T ss_pred hhhhHhhCCCCCEEEcCCCCEEEEEEE
Confidence 478999999999999988887654443
No 49
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=65.74 E-value=5.1 Score=21.70 Aligned_cols=12 Identities=50% Similarity=0.805 Sum_probs=10.4
Q ss_pred CCCCEEEEcCCC
Q psy2751 21 VLGDVVDVKFGD 32 (102)
Q Consensus 21 ~~GDii~l~~g~ 32 (102)
.+||+|.|+.|.
T Consensus 2 ~~GDvV~LKSGG 13 (53)
T PF09926_consen 2 KIGDVVQLKSGG 13 (53)
T ss_pred CCCCEEEEccCC
Confidence 589999999885
No 50
>smart00532 LIGANc Ligase N family.
Probab=64.59 E-value=5.1 Score=30.82 Aligned_cols=21 Identities=52% Similarity=0.813 Sum_probs=18.6
Q ss_pred EEccCCCCCCEEEE-cCCCEeC
Q psy2751 15 VRAEDIVLGDVVDV-KFGDRIP 35 (102)
Q Consensus 15 i~~~~l~~GDii~l-~~g~~vP 35 (102)
|.-.+|.+||.|.+ ++||.||
T Consensus 358 i~~~~i~iGd~V~V~raGdVIP 379 (441)
T smart00532 358 IEEKDIRIGDTVVVRKAGDVIP 379 (441)
T ss_pred HHHcCCCCCCEEEEEECCCcCc
Confidence 44678999999999 7999999
No 51
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=60.76 E-value=22 Score=25.01 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=15.5
Q ss_pred EEEEEeCCeEEEEEccCCCCCCEEEEcCCCEe
Q psy2751 3 FATVIRQGEKLTVRAEDIVLGDVVDVKFGDRI 34 (102)
Q Consensus 3 ~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~v 34 (102)
.+.|.-||....+++ |..|.|.||+.|
T Consensus 138 ~v~V~~DG~~~t~~a-----G~~l~L~PGESi 164 (225)
T PF07385_consen 138 DVTVPVDGIRRTVPA-----GTQLRLNPGESI 164 (225)
T ss_dssp -EEEEETTEEEEE-T-----T-EEEE-TT-EE
T ss_pred CeEEecCCcEEEecC-----CceEEeCCCCeE
Confidence 456667777766654 777888888765
No 52
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=59.51 E-value=29 Score=20.47 Aligned_cols=30 Identities=33% Similarity=0.203 Sum_probs=19.4
Q ss_pred EEEEeCCeEEEEEcc-------CCCCCCEEEEcCCCE
Q psy2751 4 ATVIRQGEKLTVRAE-------DIVLGDVVDVKFGDR 33 (102)
Q Consensus 4 ~~v~r~g~~~~i~~~-------~l~~GDii~l~~g~~ 33 (102)
+.|-..|-.++++.. ++.+||.+++..|--
T Consensus 20 A~vd~~Gv~r~V~l~Lv~~~~~~~~vGDyVLVHaGfA 56 (82)
T PRK10413 20 AQVEVCGIKRDVNIALICEGNPADLLGQWVLVHVGFA 56 (82)
T ss_pred EEEEcCCeEEEEEeeeeccCCcccccCCEEEEecchh
Confidence 445555655555432 456899999998843
No 53
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=59.47 E-value=19 Score=26.92 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=19.0
Q ss_pred cEEEEEeCCeEEEEEccC----------CCCCCEEEEc
Q psy2751 2 EFATVIRQGEKLTVRAED----------IVLGDVVDVK 29 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~----------l~~GDii~l~ 29 (102)
..+.+.|+++...++..+ |.+||+|.+.
T Consensus 198 ~~V~l~R~~~~~~i~l~dL~~~~~~ni~L~~GDvI~V~ 235 (355)
T PRK15175 198 MEVHVTRQQHYFTARLSDIYQYPGLDIALQPDDRITLR 235 (355)
T ss_pred cEEEEEECCEEEEEEHHHHhhCCcCCcEeCCCCEEEEc
Confidence 467888999887776655 4456665554
No 54
>PRK14701 reverse gyrase; Provisional
Probab=59.35 E-value=12 Score=33.50 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=28.3
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeC
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIP 35 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vP 35 (102)
+++.++|||+..++++.+|.+||.|.+...--+|
T Consensus 960 H~~lv~~~g~~~~~~a~~lk~gD~vav~~~~~~~ 993 (1638)
T PRK14701 960 HGLLVMRDGKLGWVSAKNIREGDYVAFAFNTGVE 993 (1638)
T ss_pred ceEEeecCCceeeEEHHHCCcCCEEEecccCCCC
Confidence 4677889999999999999999999987654343
No 55
>KOG3416|consensus
Probab=58.63 E-value=7.2 Score=25.09 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=13.6
Q ss_pred cCCCCCCEEEEcCCCE
Q psy2751 18 EDIVLGDVVDVKFGDR 33 (102)
Q Consensus 18 ~~l~~GDii~l~~g~~ 33 (102)
..++|||||.++.|-.
T Consensus 60 ~~~~PGDIirLt~Gy~ 75 (134)
T KOG3416|consen 60 CLIQPGDIIRLTGGYA 75 (134)
T ss_pred cccCCccEEEecccch
Confidence 5689999999998864
No 56
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=58.07 E-value=7.5 Score=31.52 Aligned_cols=21 Identities=38% Similarity=0.727 Sum_probs=18.4
Q ss_pred EEccCCCCCCEEEE-cCCCEeC
Q psy2751 15 VRAEDIVLGDVVDV-KFGDRIP 35 (102)
Q Consensus 15 i~~~~l~~GDii~l-~~g~~vP 35 (102)
|.-.+|.+||.|.+ ++||.||
T Consensus 360 I~~~di~iGD~V~V~raGdVIP 381 (669)
T PRK14350 360 IDSIGLNVGDVVKISRRGDVIP 381 (669)
T ss_pred HHHcCCCCCCEEEEEecCCCCC
Confidence 44678999999999 7999999
No 57
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=57.63 E-value=36 Score=19.76 Aligned_cols=27 Identities=33% Similarity=0.300 Sum_probs=17.9
Q ss_pred EEeCCeEEEEE---ccCCCCCCEEEEcCCC
Q psy2751 6 VIRQGEKLTVR---AEDIVLGDVVDVKFGD 32 (102)
Q Consensus 6 v~r~g~~~~i~---~~~l~~GDii~l~~g~ 32 (102)
|-..|..+++. ..++.+||.+++..|-
T Consensus 19 v~~~G~~~~v~l~lv~~~~vGD~VLVH~G~ 48 (76)
T TIGR00074 19 VEFCGIKRDVSLDLVGEVKVGDYVLVHVGF 48 (76)
T ss_pred EEcCCeEEEEEEEeeCCCCCCCEEEEecCh
Confidence 33345444433 3578999999999884
No 58
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=57.34 E-value=3.8 Score=24.45 Aligned_cols=20 Identities=20% Similarity=0.517 Sum_probs=11.8
Q ss_pred EEEEEccCCCCCCEEEEcCC
Q psy2751 12 KLTVRAEDIVLGDVVDVKFG 31 (102)
Q Consensus 12 ~~~i~~~~l~~GDii~l~~g 31 (102)
...++|++|.+|+++.+.-+
T Consensus 58 Rt~l~w~~L~VG~~VMvNYN 77 (85)
T PF12148_consen 58 RTILKWDELKVGQVVMVNYN 77 (85)
T ss_dssp -SBE-GGG--TT-EEEEEE-
T ss_pred eEeccHHhCCcccEEEEecC
Confidence 34688999999999999644
No 59
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=57.30 E-value=8.1 Score=31.25 Aligned_cols=27 Identities=37% Similarity=0.577 Sum_probs=20.9
Q ss_pred EEccCCCCCCEEEE-cCCCEeC-CceEEE
Q psy2751 15 VRAEDIVLGDVVDV-KFGDRIP-ADIRII 41 (102)
Q Consensus 15 i~~~~l~~GDii~l-~~g~~vP-aD~~ll 41 (102)
|.-.+|.+||.|.+ ++||.|| ...++.
T Consensus 363 i~~~~i~iGD~V~V~raGdVIP~i~~vv~ 391 (665)
T PRK07956 363 IERKDIRIGDTVVVRRAGDVIPEVVGVVL 391 (665)
T ss_pred HHHcCCCCCCEEEEEECCCccceeeeeec
Confidence 34578999999999 7999999 444443
No 60
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=57.17 E-value=17 Score=15.96 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=15.7
Q ss_pred CCCCCEEEEcCCCEeCCceEEEe
Q psy2751 20 IVLGDVVDVKFGDRIPADIRIIE 42 (102)
Q Consensus 20 l~~GDii~l~~g~~vPaD~~ll~ 42 (102)
+.+||.+.+..|..----+.+++
T Consensus 2 ~~~G~~V~I~~G~~~g~~g~i~~ 24 (28)
T smart00739 2 FEVGDTVRVIAGPFKGKVGKVLE 24 (28)
T ss_pred CCCCCEEEEeECCCCCcEEEEEE
Confidence 57899999988876544455443
No 61
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=57.12 E-value=8 Score=30.75 Aligned_cols=20 Identities=45% Similarity=0.498 Sum_probs=17.4
Q ss_pred EccCCCCCCEEEE-cCCCEeC
Q psy2751 16 RAEDIVLGDVVDV-KFGDRIP 35 (102)
Q Consensus 16 ~~~~l~~GDii~l-~~g~~vP 35 (102)
.-.+|.+||.|.+ ++||.||
T Consensus 356 ~~~~I~iGD~V~V~raGdVIP 376 (562)
T PRK08097 356 QQWDIAPGDQVLVSLAGQGIP 376 (562)
T ss_pred HHcCCCCCCEEEEEecCCCCc
Confidence 3578899999988 7999999
No 62
>PF03453 MoeA_N: MoeA N-terminal region (domain I and II); InterPro: IPR005110 This entry represents the N-terminal and linker domains of the MoeA protein. Proteins in this family contain two structural domains, one of which contains the conserved DGXA motif. These two domains are found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this region is uncertain. The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) [].; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1UZ5_A 1T3E_B 2FTS_A 2FU3_A 1XI8_A 1WU2_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A ....
Probab=56.89 E-value=14 Score=24.24 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=21.0
Q ss_pred ccCCCCCCEEEEcCCCEeC--CceEEEeeCceEEEcc
Q psy2751 17 AEDIVLGDVVDVKFGDRIP--ADIRIIECRGFKVDNS 51 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~~vP--aD~~ll~~~~~~vd~s 51 (102)
...+.+|.-+++..|..+| +|.++-.-. +.+...
T Consensus 81 ~~~l~~g~av~I~TGa~vP~g~DaVV~~E~-~~~~~~ 116 (162)
T PF03453_consen 81 PIPLQPGEAVRIMTGAPVPEGADAVVPIED-TEVEGD 116 (162)
T ss_dssp SSB--TTEEEEE-TTSB--TT-SEEEEGGG-CEEETT
T ss_pred cccCCCCeEEEEeCCCccCCCCCEEEEehh-eeeccc
Confidence 4789999999999999999 898876544 355543
No 63
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=56.81 E-value=8.3 Score=19.91 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=17.2
Q ss_pred CCCCCEEEE-cCCCEeCCceEEEee
Q psy2751 20 IVLGDVVDV-KFGDRIPADIRIIEC 43 (102)
Q Consensus 20 l~~GDii~l-~~g~~vPaD~~ll~~ 43 (102)
|.+|+.+.. -.|+.||.|-.=..+
T Consensus 2 l~pG~~V~CAVTg~~IpLd~LrYWs 26 (42)
T PF09866_consen 2 LSPGSFVRCAVTGQPIPLDELRYWS 26 (42)
T ss_pred ccCCCEEEEEeeCCcccHHHhccCC
Confidence 567888887 488889988654443
No 64
>PRK11479 hypothetical protein; Provisional
Probab=56.64 E-value=6.4 Score=28.47 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=18.4
Q ss_pred EEEEccCCCCCCEEEEcCCCEeC
Q psy2751 13 LTVRAEDIVLGDVVDVKFGDRIP 35 (102)
Q Consensus 13 ~~i~~~~l~~GDii~l~~g~~vP 35 (102)
..|+..+|+|||++....+..+.
T Consensus 58 ~~Vs~~~LqpGDLVFfst~t~~S 80 (274)
T PRK11479 58 KEITAPDLKPGDLLFSSSLGVTS 80 (274)
T ss_pred cccChhhCCCCCEEEEecCCccc
Confidence 36889999999999998765433
No 65
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=56.13 E-value=7 Score=24.84 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=14.9
Q ss_pred EEEEccCCCCCCEEEEcC
Q psy2751 13 LTVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 13 ~~i~~~~l~~GDii~l~~ 30 (102)
..++.++++|||+|..+.
T Consensus 70 ~~v~~~~~qpGDlvff~~ 87 (134)
T TIGR02219 70 VPVPCDAAQPGDVLVFRW 87 (134)
T ss_pred cccchhcCCCCCEEEEee
Confidence 456778999999999963
No 66
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=55.36 E-value=9 Score=30.94 Aligned_cols=21 Identities=52% Similarity=0.749 Sum_probs=18.2
Q ss_pred EEccCCCCCCEEEE-cCCCEeC
Q psy2751 15 VRAEDIVLGDVVDV-KFGDRIP 35 (102)
Q Consensus 15 i~~~~l~~GDii~l-~~g~~vP 35 (102)
|.-.+|.+||.|.+ ++||.||
T Consensus 351 i~~~~i~iGD~V~V~raGdVIP 372 (652)
T TIGR00575 351 IEELDIRIGDTVVVRKAGDVIP 372 (652)
T ss_pred HHHcCCCCCCEEEEEecCCcCc
Confidence 34568999999999 7999999
No 67
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=55.25 E-value=20 Score=20.75 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=22.4
Q ss_pred EEEEeCCeEEEEEccCCCCCCEEEEcC
Q psy2751 4 ATVIRQGEKLTVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 4 ~~v~r~g~~~~i~~~~l~~GDii~l~~ 30 (102)
-.|+-||+...-.-..|..||+|.+..
T Consensus 37 g~V~vNGe~EtRRgkKlr~gd~V~i~~ 63 (73)
T COG2501 37 GEVKVNGEVETRRGKKLRDGDVVEIPG 63 (73)
T ss_pred CeEEECCeeeeccCCEeecCCEEEECC
Confidence 357788888888889999999999853
No 68
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=54.80 E-value=9.2 Score=31.13 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEccCCCCCCEEEE-cCCCEeC-CceEE
Q psy2751 15 VRAEDIVLGDVVDV-KFGDRIP-ADIRI 40 (102)
Q Consensus 15 i~~~~l~~GDii~l-~~g~~vP-aD~~l 40 (102)
|.-.+|.+||.|.+ ++|+.|| +..++
T Consensus 385 i~~~di~iGD~V~V~raGdVIPkI~~vv 412 (689)
T PRK14351 385 IEELGVNVGDRVRVKRAGDVIPYVEEVV 412 (689)
T ss_pred HHHcCCCCCCEEEEEecCCccceeeeee
Confidence 44678999999999 6999999 33433
No 69
>PRK04980 hypothetical protein; Provisional
Probab=54.26 E-value=21 Score=22.04 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=23.5
Q ss_pred ccCCCCCCEEEEc--CCCEeCCceEEEeeCc
Q psy2751 17 AEDIVLGDVVDVK--FGDRIPADIRIIECRG 45 (102)
Q Consensus 17 ~~~l~~GDii~l~--~g~~vPaD~~ll~~~~ 45 (102)
.+..+|||++.+. .+.+.-|+..+++-+.
T Consensus 29 e~~~~~G~~~~V~~~e~g~~~c~ieI~sV~~ 59 (102)
T PRK04980 29 ESHFKPGDVLRVGTFEDDRYFCTIEVLSVSP 59 (102)
T ss_pred ccCCCCCCEEEEEECCCCcEEEEEEEEEEEE
Confidence 3458899999996 7778889999988664
No 70
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=52.74 E-value=22 Score=24.61 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=15.1
Q ss_pred cEEEEEe-CCeEEEEE-------ccCCCCCCEEEEcC
Q psy2751 2 EFATVIR-QGEKLTVR-------AEDIVLGDVVDVKF 30 (102)
Q Consensus 2 ~~~~v~r-~g~~~~i~-------~~~l~~GDii~l~~ 30 (102)
+.++|++ ||+.+..+ ..++.|||+|++.-
T Consensus 167 s~v~VI~pdG~v~~~~~a~Wn~~~~~l~PG~~I~Vp~ 203 (229)
T PF06251_consen 167 SRVYVIQPDGSVQKVPVAYWNNQHQELAPGATIYVPF 203 (229)
T ss_dssp SEEEEE-TTS-EEEEE-STTT--EEE--TT-EEEE-B
T ss_pred ccEEEEeCCCcEEEcceehhccCCCCCCCCCEEEEcC
Confidence 4577776 67765544 35788888888754
No 71
>PRK06033 hypothetical protein; Validated
Probab=52.15 E-value=15 Score=21.58 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=13.1
Q ss_pred EEccCCCCCCEEEEcCCCEeCCc
Q psy2751 15 VRAEDIVLGDVVDVKFGDRIPAD 37 (102)
Q Consensus 15 i~~~~l~~GDii~l~~g~~vPaD 37 (102)
+...++...|++.+++||.+|.|
T Consensus 15 Lg~~~i~l~dlL~L~~GDVI~L~ 37 (83)
T PRK06033 15 LGRSSMPIHQVLRMGRGAVIPLD 37 (83)
T ss_pred EecccccHHHHhCCCCCCEEEeC
Confidence 33455555666666666666654
No 72
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=51.77 E-value=11 Score=22.40 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=15.1
Q ss_pred EEEEccCCCCCCEEEEcC
Q psy2751 13 LTVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 13 ~~i~~~~l~~GDii~l~~ 30 (102)
..++.++++|||++....
T Consensus 45 ~~~~~~~~~pGDlif~~~ 62 (105)
T PF00877_consen 45 KRVPISELQPGDLIFFKG 62 (105)
T ss_dssp EHEEGGG-TTTEEEEEEG
T ss_pred cccchhcCCcccEEEEeC
Confidence 358999999999999987
No 73
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=51.34 E-value=16 Score=28.43 Aligned_cols=44 Identities=23% Similarity=0.421 Sum_probs=34.5
Q ss_pred EEEccCCCCCCEEEEcCCCEeC-----CceEEEeeCc----------eEEEccccCCCC
Q psy2751 14 TVRAEDIVLGDVVDVKFGDRIP-----ADIRIIECRG----------FKVDNSSLTGES 57 (102)
Q Consensus 14 ~i~~~~l~~GDii~l~~g~~vP-----aD~~ll~~~~----------~~vd~s~ltGEs 57 (102)
.+.....+|||+|....|-.|- |.|||+-.++ +.||-+.|||-.
T Consensus 296 ~is~~A~rPgDVi~s~~GkTVEI~NTDAEGRLVLaDal~ya~~~~p~~iIDiATLTGA~ 354 (468)
T cd00433 296 MISGNAYRPGDVITSRSGKTVEILNTDAEGRLVLADALTYAQEFKPDLIIDIATLTGAA 354 (468)
T ss_pred CCCCCCCCCCCEeEeCCCcEEEEecCCcccceeehhHHHHHhhcCCCEEEEecchHHHH
Confidence 5677889999999999998765 6677766542 688999999854
No 74
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=51.23 E-value=11 Score=25.65 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=16.4
Q ss_pred EEEEccCCCCCCEEEEcCCC
Q psy2751 13 LTVRAEDIVLGDVVDVKFGD 32 (102)
Q Consensus 13 ~~i~~~~l~~GDii~l~~g~ 32 (102)
..++.++++|||+|..+.+.
T Consensus 122 ~~V~~~~lqpGDLVfF~~~~ 141 (190)
T PRK10838 122 KSVSRSKLRTGDLVLFRAGS 141 (190)
T ss_pred cCcccCCCCCCcEEEECCCC
Confidence 35678899999999998664
No 75
>PRK04132 replication factor C small subunit; Provisional
Probab=50.97 E-value=20 Score=30.02 Aligned_cols=32 Identities=31% Similarity=0.353 Sum_probs=25.0
Q ss_pred EEEEE-eCCeEEEEEccCCCCCCEEEEcCCCEeCC
Q psy2751 3 FATVI-RQGEKLTVRAEDIVLGDVVDVKFGDRIPA 36 (102)
Q Consensus 3 ~~~v~-r~g~~~~i~~~~l~~GDii~l~~g~~vPa 36 (102)
++.+. ++|+..++++.+|.+||.|.+.. .+|.
T Consensus 135 p~lv~~~~g~~~W~~a~eL~~GD~vavpr--~lp~ 167 (846)
T PRK04132 135 PLLVNRKNGEIKWVKAEELKPGDKLAIPR--FLPA 167 (846)
T ss_pred eEEEeccCCceeeEEHhHcCCCCEEEecc--ccCc
Confidence 45555 57888999999999999998853 4553
No 76
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=50.30 E-value=23 Score=19.00 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=16.3
Q ss_pred EEeCCeEEEEEccCCCCCCEEEE
Q psy2751 6 VIRQGEKLTVRAEDIVLGDVVDV 28 (102)
Q Consensus 6 v~r~g~~~~i~~~~l~~GDii~l 28 (102)
|.-+|+...-+...|.+||.|.+
T Consensus 36 V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 36 VLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred EEECCEEccCCCCCCCCCCEEEe
Confidence 33466665566888999998875
No 77
>PRK05015 aminopeptidase B; Provisional
Probab=49.08 E-value=25 Score=27.08 Aligned_cols=46 Identities=24% Similarity=0.524 Sum_probs=33.8
Q ss_pred EEEccCCCCCCEEEEcCCCEeC-----CceEEEeeCc----------eEEEccccCCCCcc
Q psy2751 14 TVRAEDIVLGDVVDVKFGDRIP-----ADIRIIECRG----------FKVDNSSLTGESEP 59 (102)
Q Consensus 14 ~i~~~~l~~GDii~l~~g~~vP-----aD~~ll~~~~----------~~vd~s~ltGEs~p 59 (102)
.+.....+|||||.-..|-.|- |.|||+-.+. +.||-+.|||-...
T Consensus 247 misg~A~kpgDVIt~~nGkTVEI~NTDAEGRLVLAD~L~yA~~~~p~~IID~ATLTGA~~~ 307 (424)
T PRK05015 247 LISGNAFKLGDIITYRNGKTVEVMNTDAEGRLVLADGLIDASEQGPPLIIDAATLTGAAKT 307 (424)
T ss_pred CCCCCCCCCCCEEEecCCcEEeeeccCccceeeehhHHHHhhhcCCCEEEEeeccchhhHh
Confidence 4667889999999998887654 5566654422 68999999986543
No 78
>PRK08433 flagellar motor switch protein; Validated
Probab=47.46 E-value=20 Score=22.43 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=16.3
Q ss_pred EEEccCCCCCCEEEEcCCCEeCCce
Q psy2751 14 TVRAEDIVLGDVVDVKFGDRIPADI 38 (102)
Q Consensus 14 ~i~~~~l~~GDii~l~~g~~vPaD~ 38 (102)
.+...++...|++.+++||.+|.|-
T Consensus 39 ~LG~t~itl~dlL~Lq~GDVI~Ld~ 63 (111)
T PRK08433 39 ELGTTQISLLEILKFEKGSVIDLEK 63 (111)
T ss_pred EEecccccHHHHhCCCCCCEEEeCC
Confidence 3445666667777777777777654
No 79
>PRK10409 hydrogenase assembly chaperone; Provisional
Probab=47.26 E-value=55 Score=19.69 Aligned_cols=14 Identities=29% Similarity=0.207 Sum_probs=11.9
Q ss_pred CCCCCCEEEEcCCC
Q psy2751 19 DIVLGDVVDVKFGD 32 (102)
Q Consensus 19 ~l~~GDii~l~~g~ 32 (102)
++.+||.|++..|-
T Consensus 41 ~~~vGDyVLVHaGf 54 (90)
T PRK10409 41 QPRVGQWVLVHVGF 54 (90)
T ss_pred ccCCCCEEEEecCh
Confidence 47899999999884
No 80
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=45.70 E-value=55 Score=23.52 Aligned_cols=83 Identities=13% Similarity=0.011 Sum_probs=46.1
Q ss_pred cCCCCCCEEEEcCCCEeCCceEEEe----------eCceEEEccccCCCCccEEecccCCCCCCCCcccEEEeeCEEeee
Q psy2751 18 EDIVLGDVVDVKFGDRIPADIRIIE----------CRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFSTNAVEG 87 (102)
Q Consensus 18 ~~l~~GDii~l~~g~~vPaD~~ll~----------~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~Gt~v~~g 87 (102)
+++++|-...+.++=.+-.+.+|.+ |....+-+.+.-|+.-.-.|.++....--+...|.+-.+..+..|
T Consensus 20 ~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~~G 99 (260)
T COG1043 20 EDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRG 99 (260)
T ss_pred CCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEecc
Confidence 4555555555555544444444322 122456666666766655666664333344556777777777766
Q ss_pred eEEE-EEEEeCCCc
Q psy2751 88 NAFS-SFVLLLANN 100 (102)
Q Consensus 88 ~~~~-~V~~tG~~t 100 (102)
...+ -++..|++.
T Consensus 100 T~~g~g~T~IGdnn 113 (260)
T COG1043 100 TVQGGGVTRIGDNN 113 (260)
T ss_pred ccCCceeEEECCCC
Confidence 6554 556666654
No 81
>PRK06788 flagellar motor switch protein; Validated
Probab=45.54 E-value=21 Score=22.62 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=19.8
Q ss_pred EEEccCCCCCCEEEEcCCCEeCCceEE
Q psy2751 14 TVRAEDIVLGDVVDVKFGDRIPADIRI 40 (102)
Q Consensus 14 ~i~~~~l~~GDii~l~~g~~vPaD~~l 40 (102)
.+...++.++|++.++.||.||.|-..
T Consensus 41 eLG~t~ltl~DlL~L~vGDVI~Ldk~~ 67 (119)
T PRK06788 41 KLGKASITLGDVKQLKVGDVLEVEKNL 67 (119)
T ss_pred EEecceecHHHHhCCCCCCEEEeCCcC
Confidence 455677788888888888888876443
No 82
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=45.54 E-value=20 Score=20.50 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=11.1
Q ss_pred ccCCCCCCEEEEcCCCEeCCc
Q psy2751 17 AEDIVLGDVVDVKFGDRIPAD 37 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~~vPaD 37 (102)
-.++...|++.+++||.+|.|
T Consensus 18 ~~~itl~ell~L~~Gdvi~L~ 38 (77)
T TIGR02480 18 RTRITLGDLLKLGEGSVIELD 38 (77)
T ss_pred ceEeEHHHHhcCCCCCEEEcC
Confidence 344445555555555555544
No 83
>COG1372 Intein/homing endonuclease [DNA replication, recombination, and repair]
Probab=44.63 E-value=31 Score=24.83 Aligned_cols=35 Identities=26% Similarity=0.166 Sum_probs=27.0
Q ss_pred EEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceE
Q psy2751 4 ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIR 39 (102)
Q Consensus 4 ~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ 39 (102)
+.+. +++..++.+.+|.+||.|.+......|.+..
T Consensus 84 ~l~~-~~~~~~~~a~~lk~GD~i~~~~~~~~~~~~~ 118 (420)
T COG1372 84 FLTR-NGELGWVKAGELKEGDRIAVPRRLPGPEDEK 118 (420)
T ss_pred eEec-CCeEEEEEhhhcccCCEeecccccCCccccc
Confidence 3443 7788899999999999999988666655544
No 84
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=43.74 E-value=33 Score=26.11 Aligned_cols=28 Identities=11% Similarity=0.329 Sum_probs=23.0
Q ss_pred ccCCCCCCEEEEcCCCEeC--CceEEEeeC
Q psy2751 17 AEDIVLGDVVDVKFGDRIP--ADIRIIECR 44 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~~vP--aD~~ll~~~ 44 (102)
...+.+|.-+++..|..+| ||+++-.-.
T Consensus 87 ~~~~~~g~av~I~TGa~vP~gaDaVv~~E~ 116 (411)
T PRK10680 87 HGEWPAGTCIRIMTGAPVPEGCEAVVMQEQ 116 (411)
T ss_pred CcccCCCeEEEEecCCcCCCCCCEEEEEEE
Confidence 4578899999999999999 888876543
No 85
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=43.42 E-value=25 Score=24.31 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=26.0
Q ss_pred EEEeCCeEEEEEccCCCCCCEEEEcCCCEeC
Q psy2751 5 TVIRQGEKLTVRAEDIVLGDVVDVKFGDRIP 35 (102)
Q Consensus 5 ~v~r~g~~~~i~~~~l~~GDii~l~~g~~vP 35 (102)
.|.=+|+...+|+-.|.+||.+.|..-+.-|
T Consensus 120 HI~VnGk~V~iPSy~V~~gdei~V~~k~~s~ 150 (205)
T COG0522 120 HILVNGKRVNIPSYLVSPGDEISVREKSKSP 150 (205)
T ss_pred eEEECCEEeccCcEEecCCCEEEeeecccch
Confidence 3556899999999999999999998666544
No 86
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=43.20 E-value=34 Score=22.09 Aligned_cols=27 Identities=15% Similarity=0.323 Sum_probs=21.5
Q ss_pred EEeCCeEEEEEccCCCCCCEEEEcCCCE
Q psy2751 6 VIRQGEKLTVRAEDIVLGDVVDVKFGDR 33 (102)
Q Consensus 6 v~r~g~~~~i~~~~l~~GDii~l~~g~~ 33 (102)
|.-+|+. .-++..+.+||.|.+..|..
T Consensus 36 V~vnG~~-~Kps~~V~~gd~l~v~~~~~ 62 (133)
T PRK10348 36 VHYNGQR-SKPSKIVELNATLTLRQGND 62 (133)
T ss_pred EEECCEE-CCCCCccCCCCEEEEEECCE
Confidence 4456777 67889999999999987764
No 87
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=40.97 E-value=30 Score=26.03 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=19.9
Q ss_pred cEEEEEeCCeEEEEEccC------------CCCCCEEEEcC
Q psy2751 2 EFATVIRQGEKLTVRAED------------IVLGDVVDVKF 30 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~------------l~~GDii~l~~ 30 (102)
..+.+.|+|+...++..+ |++||+|.+..
T Consensus 211 ~~V~l~R~g~~~~i~l~~ll~~g~~~~ni~L~~GDvI~Vp~ 251 (379)
T PRK15078 211 RNVVLTHNGKEERISLQALMQNGDLSQNRLLYPGDILYVPR 251 (379)
T ss_pred ceEEEEECCeEEEEEHHHHHhcCCcccCceeCCCCEEEECC
Confidence 467888999888877543 55666666643
No 88
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=40.76 E-value=48 Score=20.30 Aligned_cols=38 Identities=26% Similarity=0.203 Sum_probs=25.8
Q ss_pred EEEccccCCCCccEEecccCCCCCCCCcccEEEeeCEE-eeeeEEEEEEEeCCC
Q psy2751 47 KVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFSTNA-VEGNAFSSFVLLLAN 99 (102)
Q Consensus 47 ~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~Gt~v-~~g~~~~~V~~tG~~ 99 (102)
.+|.|.-.| +|-.+..+ ..|+++ .+|.++.+.++.|+-
T Consensus 42 ~IdpSv~kG--mPh~rf~G-------------~TG~Vvg~~g~ay~V~v~~G~k 80 (98)
T COG2139 42 DIDPSVHKG--MPHPRFQG-------------KTGTVVGVRGRAYKVEVYDGNK 80 (98)
T ss_pred EeCcccccC--CCCccccC-------------cceEEEeccCCEEEEEEecCCc
Confidence 466666676 55544444 346666 788999998888874
No 89
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=40.20 E-value=31 Score=26.97 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=32.7
Q ss_pred EEEccCCCCCCEEEEcCCCEeC-----CceEEEeeCc----------eEEEccccCCCC
Q psy2751 14 TVRAEDIVLGDVVDVKFGDRIP-----ADIRIIECRG----------FKVDNSSLTGES 57 (102)
Q Consensus 14 ~i~~~~l~~GDii~l~~g~~vP-----aD~~ll~~~~----------~~vd~s~ltGEs 57 (102)
.+......|||+|....|-.|- |.|||+-.++ +.||-+.|||-.
T Consensus 310 m~~~~A~rPgDVi~~~~GkTVEV~NTDAEGRLvLADal~ya~~~~p~~iiDiATLTGa~ 368 (483)
T PRK00913 310 MPSGNAYRPGDVLTSMSGKTIEVLNTDAEGRLVLADALTYAERFKPDAIIDVATLTGAC 368 (483)
T ss_pred CCCCCCCCCCCEEEECCCcEEEeecCCcccceeehhHHHHhhhcCCCEEEEecchHHHH
Confidence 4667889999999999887764 5666655432 688888888753
No 90
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=40.19 E-value=96 Score=19.63 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=34.3
Q ss_pred CCCCEEEEcCCC---EeCCceEEEeeC----c--------------eEEEccccCCCCccEEecccCCCCCCCCcccEEE
Q psy2751 21 VLGDVVDVKFGD---RIPADIRIIECR----G--------------FKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGF 79 (102)
Q Consensus 21 ~~GDii~l~~g~---~vPaD~~ll~~~----~--------------~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~ 79 (102)
..||=+.+.|-+ .-|+||++..-. + +-+|+..|+||.--...+.+ +.+-
T Consensus 24 ~lG~GvaI~P~~~~v~AP~~G~v~~i~~T~HA~~i~~~~G~eiLiHiGidTv~l~g~gF~~~vk~G----------d~V~ 93 (124)
T cd00210 24 MMGDGFAIKPSDGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKLNGEGFTSHVEEG----------QRVK 93 (124)
T ss_pred CccceEEEEccCCeEECcCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeeeeecCCCceEEEecCC----------CEEc
Confidence 346666664432 268999886531 1 34677778887666666566 6677
Q ss_pred eeCEEe
Q psy2751 80 FSTNAV 85 (102)
Q Consensus 80 ~Gt~v~ 85 (102)
+|+.+.
T Consensus 94 ~G~~l~ 99 (124)
T cd00210 94 QGDKLL 99 (124)
T ss_pred CCCEEE
Confidence 777664
No 91
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=40.17 E-value=17 Score=20.45 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=6.4
Q ss_pred cCCCCCCEEEEcCC
Q psy2751 18 EDIVLGDVVDVKFG 31 (102)
Q Consensus 18 ~~l~~GDii~l~~g 31 (102)
.+|.+||++.+...
T Consensus 27 ~~L~~Gdvi~l~~~ 40 (77)
T PF01052_consen 27 LNLKVGDVIPLDKP 40 (77)
T ss_dssp HC--TT-EEEECCE
T ss_pred hcCCCCCEEEeCCC
Confidence 45666666666443
No 92
>PRK05698 fliN flagellar motor switch protein; Validated
Probab=39.76 E-value=26 Score=23.26 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=16.6
Q ss_pred EEEccCCCCCCEEEEcCCCEeCCce
Q psy2751 14 TVRAEDIVLGDVVDVKFGDRIPADI 38 (102)
Q Consensus 14 ~i~~~~l~~GDii~l~~g~~vPaD~ 38 (102)
.+....+...|++.+++|+.||.|-
T Consensus 86 eLG~t~itlrdLL~L~~GDVI~Ldk 110 (155)
T PRK05698 86 EVGSTDINIRNLLQLNQGSVIELDR 110 (155)
T ss_pred EEecCcccHHHHhCCCCCCEEEeCC
Confidence 3445666777777777777777654
No 93
>PF13403 Hint_2: Hint domain
Probab=39.54 E-value=26 Score=22.69 Aligned_cols=48 Identities=21% Similarity=0.139 Sum_probs=29.2
Q ss_pred EEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEE--ccccCCCCccEEeccc
Q psy2751 14 TVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVD--NSSLTGESEPQSRGVD 65 (102)
Q Consensus 14 ~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd--~s~ltGEs~pv~k~~~ 65 (102)
..++++|.+||.|.-..|...|+--+ ++. .++ .-.-.+...|+.-.++
T Consensus 15 ~~~Ve~L~~GD~V~T~dgg~~~V~wi---g~~-~~~~~~~~~~~~~~pvri~a~ 64 (147)
T PF13403_consen 15 PRPVEDLRPGDRVLTRDGGFQPVRWI---GRR-TVSPADLPAPPRLAPVRIPAG 64 (147)
T ss_pred CeEeeccCCCCEEEecCCCEEEEEEE---EEE-EecccccCcCCCcceEEEECC
Confidence 46889999999999988877663222 221 332 2223445566665554
No 94
>PF12969 DUF3857: Domain of Unknown Function with PDB structure (DUF3857); InterPro: IPR024618 This domain is based on the first domain of the PDB structure 3KD4 (residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase, despite lack of any significant sequence similarity. The domain is N-terminal to a transglutaminase domain, which is found in many proteins known to have transglutaminase activity. The function of this domain is unknown. ; PDB: 3KD4_A.
Probab=38.55 E-value=41 Score=21.57 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=10.0
Q ss_pred EEEEEccCCCCCCEEEEc
Q psy2751 12 KLTVRAEDIVLGDVVDVK 29 (102)
Q Consensus 12 ~~~i~~~~l~~GDii~l~ 29 (102)
...+...+|.+||+|.+.
T Consensus 82 ~~~~~~p~v~~GdiIe~~ 99 (177)
T PF12969_consen 82 TKVFAFPDVRVGDIIEYS 99 (177)
T ss_dssp EEEEE--S--TT-EEEEE
T ss_pred EEEEEcCCCCCCcEEEEE
Confidence 345888899999999885
No 95
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=38.03 E-value=55 Score=19.18 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=11.2
Q ss_pred EEccCCCCCCEEEEc
Q psy2751 15 VRAEDIVLGDVVDVK 29 (102)
Q Consensus 15 i~~~~l~~GDii~l~ 29 (102)
.+.+++.+|||+.+.
T Consensus 66 ~~v~~a~aGdIv~v~ 80 (94)
T cd04090 66 IEVNEAPAGNWVLIK 80 (94)
T ss_pred EEcceeCCCCEEEEE
Confidence 456778888888774
No 96
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=37.64 E-value=45 Score=22.87 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=21.6
Q ss_pred EEeCCeEEEEEccCCCCCCEEEEcCC
Q psy2751 6 VIRQGEKLTVRAEDIVLGDVVDVKFG 31 (102)
Q Consensus 6 v~r~g~~~~i~~~~l~~GDii~l~~g 31 (102)
|.-||+....+...|.+||+|.+...
T Consensus 120 V~VNgk~v~~ps~~v~~GD~I~v~~~ 145 (203)
T PRK05327 120 ILVNGKKVNIPSYRVKPGDVIEVREK 145 (203)
T ss_pred EEECCEEECCCCcCCCCCCEEEECCc
Confidence 55578888889999999999999754
No 97
>KOG2107|consensus
Probab=37.37 E-value=39 Score=22.85 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=15.2
Q ss_pred CCeEEEEEccCCCCCCEEEEcCC
Q psy2751 9 QGEKLTVRAEDIVLGDVVDVKFG 31 (102)
Q Consensus 9 ~g~~~~i~~~~l~~GDii~l~~g 31 (102)
+++|++|.. ..||.|.|.+|
T Consensus 112 dd~WIRi~v---ekGDlivlPaG 131 (179)
T KOG2107|consen 112 DDQWIRIFV---EKGDLIVLPAG 131 (179)
T ss_pred CCCEEEEEE---ecCCEEEecCc
Confidence 567777764 67999988776
No 98
>COG4013 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.27 E-value=75 Score=18.99 Aligned_cols=27 Identities=30% Similarity=0.615 Sum_probs=19.0
Q ss_pred cCCCCCCEEEEcCCCEeCCceEEEeeCc
Q psy2751 18 EDIVLGDVVDVKFGDRIPADIRIIECRG 45 (102)
Q Consensus 18 ~~l~~GDii~l~~g~~vPaD~~ll~~~~ 45 (102)
+++.+||.+.+.-| ++-.-|++..-.+
T Consensus 19 eeV~~gd~vel~~g-rVhIpG~vv~~n~ 45 (91)
T COG4013 19 EEVDVGDYVELYFG-RVHIPGRVVHYND 45 (91)
T ss_pred hcCCCCCEEEEEEE-EEEeccEEEEeec
Confidence 47899999999987 4444466655433
No 99
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=37.05 E-value=34 Score=18.91 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=8.6
Q ss_pred CCCCCEEEEcCCCE
Q psy2751 20 IVLGDVVDVKFGDR 33 (102)
Q Consensus 20 l~~GDii~l~~g~~ 33 (102)
|.+||.+.+..|++
T Consensus 40 L~~G~~l~l~~g~~ 53 (63)
T PF11142_consen 40 LQAGDSLRLRRGGR 53 (63)
T ss_pred ECCCCEEEeCCCCE
Confidence 55666666666655
No 100
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=36.98 E-value=55 Score=20.32 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=11.3
Q ss_pred cCCCCCCEEEEcC
Q psy2751 18 EDIVLGDVVDVKF 30 (102)
Q Consensus 18 ~~l~~GDii~l~~ 30 (102)
+++.+||.|.+..
T Consensus 30 ~~ikvGD~I~f~~ 42 (109)
T cd06555 30 QQIKVGDKILFND 42 (109)
T ss_pred hcCCCCCEEEEEE
Confidence 5799999999965
No 101
>PRK08983 fliN flagellar motor switch protein; Validated
Probab=36.19 E-value=10 Score=24.21 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=17.3
Q ss_pred EEEccCCCCCCEEEEcCCCEeCCce
Q psy2751 14 TVRAEDIVLGDVVDVKFGDRIPADI 38 (102)
Q Consensus 14 ~i~~~~l~~GDii~l~~g~~vPaD~ 38 (102)
.+....+..+|++.+++|+.||.|-
T Consensus 58 ~LG~t~ltl~dlL~L~~GDVI~Ld~ 82 (127)
T PRK08983 58 EVGRSFISIRNLLQLNQGSVVELDR 82 (127)
T ss_pred EEecCcccHHHHhCCCCCCEEEeCC
Confidence 3455677777777777777777654
No 102
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=36.13 E-value=49 Score=22.79 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.1
Q ss_pred EEeCCeEEEEEccCCCCCCEEEEcC
Q psy2751 6 VIRQGEKLTVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 6 v~r~g~~~~i~~~~l~~GDii~l~~ 30 (102)
|.-+|+....+...+.+||.|.+..
T Consensus 116 V~VNGk~v~~ps~~Vk~GD~I~V~~ 140 (201)
T CHL00113 116 ILVNGRIVDIPSYRCKPKDIITVKD 140 (201)
T ss_pred EEECCEEecCccccCCCCCEEEEcc
Confidence 4457888889999999999999964
No 103
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=35.78 E-value=1.1e+02 Score=24.83 Aligned_cols=31 Identities=29% Similarity=0.264 Sum_probs=24.3
Q ss_pred cCCCCCCEEEEcCCCEeC--CceEEEeeCceEEE
Q psy2751 18 EDIVLGDVVDVKFGDRIP--ADIRIIECRGFKVD 49 (102)
Q Consensus 18 ~~l~~GDii~l~~g~~vP--aD~~ll~~~~~~vd 49 (102)
..|.+|.-+++..|..+| ||+++-.-. +.++
T Consensus 86 ~~l~~G~avrI~TGa~iP~GaDaVI~~E~-~~~~ 118 (659)
T PLN02699 86 VTLTPGTVAYVTTGGPIPDGADAVVQVED-TEVV 118 (659)
T ss_pred cccCCCcEEEEccCCCCCCCCCEEEEEEE-EEec
Confidence 467889999999999999 898886544 3443
No 104
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=35.22 E-value=43 Score=22.88 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=21.1
Q ss_pred EEeCCeEEEEEccCCCCCCEEEEcCC
Q psy2751 6 VIRQGEKLTVRAEDIVLGDVVDVKFG 31 (102)
Q Consensus 6 v~r~g~~~~i~~~~l~~GDii~l~~g 31 (102)
|.-||+....+...|.+||+|.+..-
T Consensus 117 V~VNgk~v~~ps~~V~~GD~I~V~~~ 142 (200)
T TIGR01017 117 ILVNGKKVDIPSYQVRPGDIISIKEK 142 (200)
T ss_pred EEECCEEeCCCCCCCCCCCEEEEeeC
Confidence 45577778889999999999999743
No 105
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=35.12 E-value=93 Score=23.89 Aligned_cols=30 Identities=27% Similarity=0.228 Sum_probs=23.1
Q ss_pred CcEEEEEe--CCeEEEEEccCCCCCCEEEEcC
Q psy2751 1 MEFATVIR--QGEKLTVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 1 ~~~~~v~r--~g~~~~i~~~~l~~GDii~l~~ 30 (102)
|+-+.|+. +++-.-.+..+|+.||.|.+-.
T Consensus 120 MDc~iVv~~~~~~~~~~~~r~lk~GD~VVvG~ 151 (407)
T TIGR00300 120 MDAAIVVTPNPPRARCKPIREIKKGDRVVVGV 151 (407)
T ss_pred cceEEEEecCCCeEEEEEccccCCCCEEEECC
Confidence 55666765 6667778899999999998843
No 106
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=35.02 E-value=21 Score=24.53 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=26.1
Q ss_pred EEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceE
Q psy2751 3 FATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIR 39 (102)
Q Consensus 3 ~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ 39 (102)
.+.|+|++.......+.+.+ |.|.+.||---|.|.-
T Consensus 27 ~v~V~rnd~~~~~~~~~~~p-d~iviSPGPG~P~d~G 62 (191)
T COG0512 27 EVTVVRNDDISLELIEALKP-DAIVISPGPGTPKDAG 62 (191)
T ss_pred ceEEEECCccCHHHHhhcCC-CEEEEcCCCCChHHcc
Confidence 47788888444344556666 9999999988887653
No 107
>PRK07963 fliN flagellar motor switch protein FliN; Validated
Probab=34.71 E-value=36 Score=22.05 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=13.9
Q ss_pred EEccCCCCCCEEEEcCCCEeCCce
Q psy2751 15 VRAEDIVLGDVVDVKFGDRIPADI 38 (102)
Q Consensus 15 i~~~~l~~GDii~l~~g~~vPaD~ 38 (102)
+.-.++...|++.+++|+.||.|.
T Consensus 68 LG~t~itlrdLL~L~~GDVI~Ld~ 91 (137)
T PRK07963 68 LGRTRMTIKELLRLTQGSVVALDG 91 (137)
T ss_pred EecccccHHHHhCCCCCCEEEeCC
Confidence 334555556666666666666553
No 108
>PF05708 DUF830: Orthopoxvirus protein of unknown function (DUF830); PDB: 2IF6_B 3KW0_C.
Probab=34.50 E-value=20 Score=22.84 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=7.7
Q ss_pred CCCCCCEEEEcCCCE
Q psy2751 19 DIVLGDVVDVKFGDR 33 (102)
Q Consensus 19 ~l~~GDii~l~~g~~ 33 (102)
+|++||||..+....
T Consensus 1 ~l~~GDIil~~~~~~ 15 (158)
T PF05708_consen 1 KLQTGDIILTRGKSS 15 (158)
T ss_dssp ---TT-EEEEEE-SC
T ss_pred CCCCeeEEEEECCch
Confidence 478999999976533
No 109
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=34.17 E-value=27 Score=21.59 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=15.3
Q ss_pred EEccCCCCCCEEEEcCCCE
Q psy2751 15 VRAEDIVLGDVVDVKFGDR 33 (102)
Q Consensus 15 i~~~~l~~GDii~l~~g~~ 33 (102)
=+...+.+||.+.+.+|..
T Consensus 81 g~~~~l~~Gd~i~ip~g~~ 99 (131)
T COG1917 81 GEKKELKAGDVIIIPPGVV 99 (131)
T ss_pred CCceEecCCCEEEECCCCe
Confidence 3467789999999998875
No 110
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=34.10 E-value=74 Score=23.90 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=24.6
Q ss_pred cCCCCCCEEEEcCCCEeC--CceEEEeeCceEEE
Q psy2751 18 EDIVLGDVVDVKFGDRIP--ADIRIIECRGFKVD 49 (102)
Q Consensus 18 ~~l~~GDii~l~~g~~vP--aD~~ll~~~~~~vd 49 (102)
..+.+|.-+++..|..+| ||+++-.-. +.++
T Consensus 79 ~~~~~g~av~I~TGa~lP~gaDaVV~~E~-~~~~ 111 (394)
T cd00887 79 GPLGPGEAVRIMTGAPLPEGADAVVMVED-TEEE 111 (394)
T ss_pred cccCCCeEEEEcCCCCCCCCCCEEEEEEe-EEEC
Confidence 468899999999999999 998886544 3443
No 111
>PF08696 Dna2: DNA replication factor Dna2; InterPro: IPR014808 Dna2 is a DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease, (5'-flap endonuclease) and helicase activities. It is required for Okazaki fragment processing and is involved in DNA repair pathways []. ; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication
Probab=34.04 E-value=62 Score=22.18 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=13.3
Q ss_pred CCeEEEEEccCCCCCCEEEEcC
Q psy2751 9 QGEKLTVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 9 ~g~~~~i~~~~l~~GDii~l~~ 30 (102)
.|.|...+ +.+||+|.+-.
T Consensus 17 ~~~W~~t~---v~~Gd~I~ii~ 35 (209)
T PF08696_consen 17 RDEWCETP---VSPGDIIHIIG 35 (209)
T ss_pred eCCcccCC---CcCCCEEEEEE
Confidence 34555433 89999999865
No 112
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=33.81 E-value=56 Score=17.37 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=9.7
Q ss_pred cCCCCCCEEEEcCCCE
Q psy2751 18 EDIVLGDVVDVKFGDR 33 (102)
Q Consensus 18 ~~l~~GDii~l~~g~~ 33 (102)
..+.+||.+.+.+|..
T Consensus 39 ~~l~~Gd~~~i~~~~~ 54 (71)
T PF07883_consen 39 VELKPGDAIYIPPGVP 54 (71)
T ss_dssp EEEETTEEEEEETTSE
T ss_pred eEccCCEEEEECCCCe
Confidence 4456677777666643
No 113
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=33.70 E-value=69 Score=18.50 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=9.9
Q ss_pred EEccCCCCCCEEEEc
Q psy2751 15 VRAEDIVLGDVVDVK 29 (102)
Q Consensus 15 i~~~~l~~GDii~l~ 29 (102)
.+.+++.+|||+.+.
T Consensus 57 ~~v~~a~aGdIv~v~ 71 (85)
T cd03689 57 ETVDEAYPGDIIGLV 71 (85)
T ss_pred eEcCEECCCCEEEEE
Confidence 345667777777764
No 114
>PRK08916 flagellar motor switch protein; Reviewed
Probab=33.69 E-value=38 Score=21.33 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=17.1
Q ss_pred EEEccCCCCCCEEEEcCCCEeCCce
Q psy2751 14 TVRAEDIVLGDVVDVKFGDRIPADI 38 (102)
Q Consensus 14 ~i~~~~l~~GDii~l~~g~~vPaD~ 38 (102)
.+....+...|++.+++|+.||.|-
T Consensus 52 ~LG~~~ltl~ELL~L~~GDVI~Ld~ 76 (116)
T PRK08916 52 VLGRSKMDVGQLLKLGPGSVLELDR 76 (116)
T ss_pred EEecccccHHHHhcCCCCCEEEcCC
Confidence 3445667777777777777777663
No 115
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=32.64 E-value=88 Score=16.93 Aligned_cols=12 Identities=42% Similarity=0.639 Sum_probs=9.5
Q ss_pred CCCCCCEEEEcC
Q psy2751 19 DIVLGDVVDVKF 30 (102)
Q Consensus 19 ~l~~GDii~l~~ 30 (102)
.+.+||.|.++.
T Consensus 40 ~~~vGD~V~~~~ 51 (64)
T cd04451 40 RILPGDRVKVEL 51 (64)
T ss_pred ccCCCCEEEEEE
Confidence 378999998873
No 116
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=32.48 E-value=77 Score=18.20 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=8.0
Q ss_pred EccCCCCCCEEEE
Q psy2751 16 RAEDIVLGDVVDV 28 (102)
Q Consensus 16 ~~~~l~~GDii~l 28 (102)
+.+++.+|||+.+
T Consensus 59 ~v~~~~aGdI~ai 71 (85)
T cd03690 59 TADTVTAGDIAIL 71 (85)
T ss_pred ECcEECCCCEEEE
Confidence 4466666666655
No 117
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.24 E-value=40 Score=20.90 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=19.2
Q ss_pred EccCCCCCCEEEEcCCCEeCCceEEEee
Q psy2751 16 RAEDIVLGDVVDVKFGDRIPADIRIIEC 43 (102)
Q Consensus 16 ~~~~l~~GDii~l~~g~~vPaD~~ll~~ 43 (102)
...++.|||.|.... +.+|+-.+=+..
T Consensus 30 krr~ik~GD~IiF~~-~~l~v~V~~vr~ 56 (111)
T COG4043 30 KRRQIKPGDKIIFNG-DKLKVEVIDVRV 56 (111)
T ss_pred hhcCCCCCCEEEEcC-CeeEEEEEEEee
Confidence 357899999999864 677765544443
No 118
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=32.01 E-value=60 Score=25.09 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=12.3
Q ss_pred ccCCCCCCEEEEcCCCEeCC
Q psy2751 17 AEDIVLGDVVDVKFGDRIPA 36 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~~vPa 36 (102)
.+.++|||.|.|+.|..-.+
T Consensus 11 i~~a~pGD~I~L~~Gty~~~ 30 (425)
T PF14592_consen 11 IDNAKPGDTIVLADGTYKDV 30 (425)
T ss_dssp HHH--TT-EEEE-SEEEET-
T ss_pred HHhCCCCCEEEECCceeecc
Confidence 35789999999999988644
No 119
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=31.82 E-value=1.4e+02 Score=18.88 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=31.9
Q ss_pred CCCEEEEcC--CC-EeCCceEEEeeCc------------------eEEEccccCCCCccEEecccCCCCCCCCcccEEEe
Q psy2751 22 LGDVVDVKF--GD-RIPADIRIIECRG------------------FKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFF 80 (102)
Q Consensus 22 ~GDii~l~~--g~-~vPaD~~ll~~~~------------------~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~ 80 (102)
.||=+.+.| |. .-|+||.+..-.. +=+|+..|.||.--...+.+ +.+-+
T Consensus 25 ~G~G~aI~P~~~~v~AP~~G~v~~v~~T~HA~gi~~~~G~evLiHiGidTV~L~G~gF~~~v~~G----------d~V~~ 94 (121)
T TIGR00830 25 VGDGFAILPTDGKVVAPVDGKIGKIFPTKHAFGIESDSGVEILIHIGIDTVKLNGEGFTSHVEEG----------QRVKK 94 (121)
T ss_pred ccceEEEEcCCCeEEccCCeEEEEEccCCCEEEEEeCCCcEEEEEeeeceeecCCCceEEEecCC----------CEEcC
Confidence 355555543 33 3689998865211 34677778887665555555 55666
Q ss_pred eCEEe
Q psy2751 81 STNAV 85 (102)
Q Consensus 81 Gt~v~ 85 (102)
|..+.
T Consensus 95 G~~l~ 99 (121)
T TIGR00830 95 GDPLL 99 (121)
T ss_pred CCEEE
Confidence 66553
No 120
>PRK06437 hypothetical protein; Provisional
Probab=31.78 E-value=66 Score=17.82 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=16.8
Q ss_pred CCCCCEEEEcCCCEeCCceEEEeeCc
Q psy2751 20 IVLGDVVDVKFGDRIPADIRIIECRG 45 (102)
Q Consensus 20 l~~GDii~l~~g~~vPaD~~ll~~~~ 45 (102)
+.+..+.....|+.+|.|-.|-+++.
T Consensus 32 i~~~~vaV~vNg~iv~~~~~L~dgD~ 57 (67)
T PRK06437 32 LDEEEYVVIVNGSPVLEDHNVKKEDD 57 (67)
T ss_pred CCCccEEEEECCEECCCceEcCCCCE
Confidence 44566666677778886666655543
No 121
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=31.41 E-value=22 Score=20.12 Aligned_cols=16 Identities=19% Similarity=0.050 Sum_probs=10.9
Q ss_pred cCCCCCCEEEEcCCCE
Q psy2751 18 EDIVLGDVVDVKFGDR 33 (102)
Q Consensus 18 ~~l~~GDii~l~~g~~ 33 (102)
..+.+||.+.+.+|..
T Consensus 46 ~~~~aGD~~~~p~G~~ 61 (74)
T PF05899_consen 46 VTFKAGDAFFLPKGWT 61 (74)
T ss_dssp EEEETTEEEEE-TTEE
T ss_pred EEEcCCcEEEECCCCE
Confidence 4567788888887764
No 122
>PF11197 DUF2835: Protein of unknown function (DUF2835); InterPro: IPR021363 This is a bacterial family of uncharacterised proteins. One member of this family (A4VM42 from SWISSPROT) is annotated as the A subunit of Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV).
Probab=31.31 E-value=54 Score=18.63 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=15.1
Q ss_pred cEEEEE-eCCeEEEEEccCCCC
Q psy2751 2 EFATVI-RQGEKLTVRAEDIVL 22 (102)
Q Consensus 2 ~~~~v~-r~g~~~~i~~~~l~~ 22 (102)
+++.|. ++|+..++|+..+.|
T Consensus 21 ~~V~v~s~~Gr~v~~Pa~~lRp 42 (68)
T PF11197_consen 21 SKVVVRSDDGRRVQFPARHLRP 42 (68)
T ss_pred cEEEEEecCCcEEEEeHHHCcc
Confidence 345555 678888999887764
No 123
>PF02814 UreE_N: UreE urease accessory protein, N-terminal domain; InterPro: IPR004029 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The N-terminal domain is termed the peptide-binding domain. Deletion of this domain does not eliminate enzymatic activity, and the truncated protein can still activate urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=31.29 E-value=37 Score=18.66 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=11.6
Q ss_pred cCCCCCCEEEEcCCCEe
Q psy2751 18 EDIVLGDVVDVKFGDRI 34 (102)
Q Consensus 18 ~~l~~GDii~l~~g~~v 34 (102)
..|..||++....|..|
T Consensus 49 ~~L~~GDvL~~d~g~~I 65 (65)
T PF02814_consen 49 TVLRDGDVLYLDDGRLI 65 (65)
T ss_dssp TT--TTEEEEECTSEEE
T ss_pred cccCCCCEEEeCCCCCC
Confidence 45899999998887654
No 124
>CHL00010 infA translation initiation factor 1
Probab=30.72 E-value=66 Score=18.53 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=13.9
Q ss_pred CCCCCEEEEcCCCEeCCceEEEe
Q psy2751 20 IVLGDVVDVKFGDRIPADIRIIE 42 (102)
Q Consensus 20 l~~GDii~l~~g~~vPaD~~ll~ 42 (102)
+.+||.|.+++-..=+-.|+|+.
T Consensus 47 ~~vGD~V~ve~~~~~~~~g~Ii~ 69 (78)
T CHL00010 47 ILPGDRVKVELSPYDLTKGRIIY 69 (78)
T ss_pred cCCCCEEEEEEcccCCCeEEEEE
Confidence 67899999973221133366654
No 125
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=30.53 E-value=35 Score=19.77 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=11.9
Q ss_pred ccCCCCCCEEEEcCCC
Q psy2751 17 AEDIVLGDVVDVKFGD 32 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~ 32 (102)
+=+.+|||++...++.
T Consensus 54 ~LeCqpgDiley~~d~ 69 (73)
T COG3655 54 ALECQPGDILEYVPDS 69 (73)
T ss_pred HcCCChhheeEEecCC
Confidence 3467999999986543
No 126
>PRK00276 infA translation initiation factor IF-1; Validated
Probab=30.40 E-value=66 Score=18.11 Aligned_cols=11 Identities=45% Similarity=0.700 Sum_probs=9.1
Q ss_pred CCCCCEEEEcC
Q psy2751 20 IVLGDVVDVKF 30 (102)
Q Consensus 20 l~~GDii~l~~ 30 (102)
+.+||+|.+++
T Consensus 47 i~vGD~V~ve~ 57 (72)
T PRK00276 47 ILPGDKVTVEL 57 (72)
T ss_pred cCCCCEEEEEE
Confidence 78899999873
No 127
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=30.29 E-value=73 Score=16.35 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=17.8
Q ss_pred EEeCCeEEEEEccCCCCCCEEEEcC
Q psy2751 6 VIRQGEKLTVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 6 v~r~g~~~~i~~~~l~~GDii~l~~ 30 (102)
|.-+|+...-+...+.+||.|.+..
T Consensus 28 V~vn~~~~~~~~~~v~~~d~i~i~~ 52 (70)
T cd00165 28 VLVNGKVVTKPSYKVKPGDVIEVDG 52 (70)
T ss_pred EEECCEEccCCccCcCCCCEEEEcC
Confidence 4456666555677888999988864
No 128
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=29.95 E-value=35 Score=20.20 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=10.5
Q ss_pred cCCCCCCEEEEcCCCE
Q psy2751 18 EDIVLGDVVDVKFGDR 33 (102)
Q Consensus 18 ~~l~~GDii~l~~g~~ 33 (102)
..+.+||++.+.+|+.
T Consensus 43 ~~l~~g~~~li~p~~~ 58 (136)
T PF02311_consen 43 YPLKPGDLFLIPPGQP 58 (136)
T ss_dssp EEE-TT-EEEE-TTS-
T ss_pred EEEECCEEEEecCCcc
Confidence 5678899999999986
No 129
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=29.93 E-value=75 Score=25.46 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=23.2
Q ss_pred ccCCCCCCEEEEcCCCEeC--CceEEEeeC
Q psy2751 17 AEDIVLGDVVDVKFGDRIP--ADIRIIECR 44 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~~vP--aD~~ll~~~ 44 (102)
...+.+|.-+++-.|..+| ||.++-.-.
T Consensus 277 ~~~l~~G~avrI~TGa~iP~gaDaVV~~E~ 306 (597)
T PRK14491 277 DGTLQAGEAVRIMTGAPVPAGADTVVMREL 306 (597)
T ss_pred CcccCCCcEEEeCcCCCCCCCCCEEEEEEE
Confidence 3568899999999999999 898886543
No 130
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=29.78 E-value=44 Score=18.43 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=9.6
Q ss_pred CCCCCCEEEEcCC
Q psy2751 19 DIVLGDVVDVKFG 31 (102)
Q Consensus 19 ~l~~GDii~l~~g 31 (102)
++.+||+|.++..
T Consensus 1 ~~~vgDiV~mKK~ 13 (57)
T PF06107_consen 1 EYEVGDIVEMKKP 13 (57)
T ss_pred CccCCCEEEEcCC
Confidence 3578999998653
No 131
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=29.60 E-value=35 Score=21.09 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=8.2
Q ss_pred ccCCCCCCEEEEcCC
Q psy2751 17 AEDIVLGDVVDVKFG 31 (102)
Q Consensus 17 ~~~l~~GDii~l~~g 31 (102)
-.++.+||+|.+.-+
T Consensus 4 ~~~~~~GD~I~~~r~ 18 (125)
T PF04970_consen 4 KKRLKPGDHIEVPRG 18 (125)
T ss_dssp --S--TT-EEEEEET
T ss_pred ccCCCCCCEEEEecC
Confidence 467899999998655
No 132
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=29.54 E-value=97 Score=24.70 Aligned_cols=28 Identities=32% Similarity=0.292 Sum_probs=23.4
Q ss_pred ccCCCCCCEEEEcCCCEeC--CceEEEeeC
Q psy2751 17 AEDIVLGDVVDVKFGDRIP--ADIRIIECR 44 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~~vP--aD~~ll~~~ 44 (102)
...+.+|.-+++..|..+| ||.++..-.
T Consensus 88 ~~~l~~GeAv~I~TGaplP~GaDAVV~vE~ 117 (546)
T PRK14497 88 EIHIKECEAVEVDTGSMIPMGADAVIKVEN 117 (546)
T ss_pred CcccCCCceEEeccCCCCCCCCCEEEEhhh
Confidence 4578899999999999999 999886433
No 133
>TIGR00061 L21 ribosomal protein L21. Eubacterial and chloroplast.
Probab=29.35 E-value=1.1e+02 Score=18.72 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=12.6
Q ss_pred CCCCCEEEEc-----CCCEeCCceEEEe
Q psy2751 20 IVLGDVVDVK-----FGDRIPADIRIIE 42 (102)
Q Consensus 20 l~~GDii~l~-----~g~~vPaD~~ll~ 42 (102)
+.+||.+.+. +|+.+-.|-+|+-
T Consensus 13 V~~Gd~i~Ve~l~~~~G~~i~l~~VLlv 40 (101)
T TIGR00061 13 VEEGQTVRIEKLDAAPGDTVEFDKVLMV 40 (101)
T ss_pred EeCCCEEEEcccCCCCCCEEEEEEEEEE
Confidence 3456666663 4555555555543
No 134
>smart00363 S4 S4 RNA-binding domain.
Probab=29.12 E-value=71 Score=15.82 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=14.1
Q ss_pred EeCCeEEEEEccCCCCCCEEEEcC
Q psy2751 7 IRQGEKLTVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 7 ~r~g~~~~i~~~~l~~GDii~l~~ 30 (102)
.-+|+...-+...+..||.|.+..
T Consensus 29 ~vng~~~~~~~~~l~~gd~i~~~~ 52 (60)
T smart00363 29 KVNGKKVTKPSYIVKPGDVISVRG 52 (60)
T ss_pred EECCEEecCCCeEeCCCCEEEEcc
Confidence 345554433556667788777653
No 135
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=28.91 E-value=88 Score=17.65 Aligned_cols=15 Identities=7% Similarity=0.171 Sum_probs=10.6
Q ss_pred EEccCCCCCCEEEEc
Q psy2751 15 VRAEDIVLGDVVDVK 29 (102)
Q Consensus 15 i~~~~l~~GDii~l~ 29 (102)
.+.+++.+|||+.+.
T Consensus 56 ~~v~~~~aGdI~~i~ 70 (83)
T cd04092 56 QEIPSLSAGNIGVIT 70 (83)
T ss_pred eECCeeCCCCEEEEE
Confidence 456777788887763
No 136
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=28.69 E-value=1.6e+02 Score=22.50 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=23.8
Q ss_pred ccCCCCCCEEEEcCCCEeC--CceEEEeeC
Q psy2751 17 AEDIVLGDVVDVKFGDRIP--ADIRIIECR 44 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~~vP--aD~~ll~~~ 44 (102)
..++.+|..+++..|..+| ||.++..-.
T Consensus 86 ~~~v~~geavrI~TGA~lP~gaDaVV~~E~ 115 (404)
T COG0303 86 DLEVGPGEAVRIMTGAPLPEGADAVVMVED 115 (404)
T ss_pred CcccCCCeEEEEeCCCCCCCCCCEEEEEEE
Confidence 4589999999999999999 888886543
No 137
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=28.33 E-value=1.2e+02 Score=23.29 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=23.0
Q ss_pred ccCCCCCCEEEEcCCCEeC--CceEEEeeC
Q psy2751 17 AEDIVLGDVVDVKFGDRIP--ADIRIIECR 44 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~~vP--aD~~ll~~~ 44 (102)
...+.+|.-+++..|..+| ||+++..-.
T Consensus 103 ~~~~~~G~av~I~TGa~lP~gaDaVV~~E~ 132 (419)
T PRK14690 103 SGRVPEGMALRILTGAALPEGVDTVVLEED 132 (419)
T ss_pred CcccCCCcEEEEcCCCCCCCCCCEEEEEEE
Confidence 3468889999999999999 898886543
No 138
>PLN02947 oxidoreductase
Probab=27.84 E-value=68 Score=24.08 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=17.0
Q ss_pred EEEeCCeEEEEEccC----CCCCCEEEEcCCCE
Q psy2751 5 TVIRQGEKLTVRAED----IVLGDVVDVKFGDR 33 (102)
Q Consensus 5 ~v~r~g~~~~i~~~~----l~~GDii~l~~g~~ 33 (102)
.|.++|+|..++... +.+||.+.+=.|++
T Consensus 265 QV~~~g~Wi~V~p~pga~VVNvGD~Lq~~SNG~ 297 (374)
T PLN02947 265 QIMHAGRWVTVEPIPGSFVVNVGDHLEIFSNGR 297 (374)
T ss_pred eEeECCEEEeCCCCCCeEEEEeCceeeeeeCCE
Confidence 466788888877532 44555555544433
No 139
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=27.80 E-value=68 Score=18.66 Aligned_cols=13 Identities=46% Similarity=0.623 Sum_probs=8.8
Q ss_pred CCCCCCEEEEcCC
Q psy2751 19 DIVLGDVVDVKFG 31 (102)
Q Consensus 19 ~l~~GDii~l~~g 31 (102)
.+.|||+|.+++-
T Consensus 46 ~I~~GD~V~Ve~~ 58 (75)
T COG0361 46 RILPGDVVLVELS 58 (75)
T ss_pred EeCCCCEEEEEec
Confidence 3667888877653
No 140
>CHL00075 rpl21 ribosomal protein L21
Probab=27.43 E-value=1.3e+02 Score=18.61 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=11.8
Q ss_pred CCCCEEEE-----cCCCEeCCceEEEe
Q psy2751 21 VLGDVVDV-----KFGDRIPADIRIIE 42 (102)
Q Consensus 21 ~~GDii~l-----~~g~~vPaD~~ll~ 42 (102)
.+||++.+ .+|+.+-.|-+|+-
T Consensus 17 ~~Gd~i~vekl~~~~G~~i~l~~VL~~ 43 (108)
T CHL00075 17 EPGRFYDINHFPLEPGTKILLNRVLLI 43 (108)
T ss_pred eCCCEEEEEEcCCCCCCEEEEEEEEEE
Confidence 34665555 35555555555543
No 141
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=27.38 E-value=74 Score=20.98 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=13.7
Q ss_pred CCeEEEEEccCCCCCCEEEEcCCC
Q psy2751 9 QGEKLTVRAEDIVLGDVVDVKFGD 32 (102)
Q Consensus 9 ~g~~~~i~~~~l~~GDii~l~~g~ 32 (102)
++.|.++.. .+||+|.|.+|-
T Consensus 111 ~~~wiri~~---e~GDli~vP~g~ 131 (157)
T PF03079_consen 111 DDVWIRILC---EKGDLIVVPAGT 131 (157)
T ss_dssp TCEEEEEEE---ETTCEEEE-TT-
T ss_pred CCEEEEEEE---cCCCEEecCCCC
Confidence 456666654 569999988874
No 142
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=27.05 E-value=82 Score=17.67 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=10.1
Q ss_pred EEEccCCCCCCEEEE
Q psy2751 14 TVRAEDIVLGDVVDV 28 (102)
Q Consensus 14 ~i~~~~l~~GDii~l 28 (102)
..+.+++.+|||+.+
T Consensus 55 ~~~v~~~~aGdI~~i 69 (83)
T cd04088 55 QEEVEEAGAGDIGAV 69 (83)
T ss_pred ceECCEeCCCCEEEE
Confidence 345677777777776
No 143
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=27.05 E-value=31 Score=17.39 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=12.4
Q ss_pred EeCCeEEEEEccCCCCCCEE
Q psy2751 7 IRQGEKLTVRAEDIVLGDVV 26 (102)
Q Consensus 7 ~r~g~~~~i~~~~l~~GDii 26 (102)
.-||+...-+...+.+||+|
T Consensus 29 ~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 29 KVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp EETTEEESSTTSBESTTEEE
T ss_pred EECCEEEcCCCCCCCCcCCC
Confidence 34555555566777777765
No 144
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.91 E-value=82 Score=22.75 Aligned_cols=15 Identities=40% Similarity=0.346 Sum_probs=9.5
Q ss_pred CCCCCCEEEEcCCCE
Q psy2751 19 DIVLGDVVDVKFGDR 33 (102)
Q Consensus 19 ~l~~GDii~l~~g~~ 33 (102)
++.|||+|.++.|..
T Consensus 261 ~~~pGd~vvv~dg~m 275 (293)
T COG4079 261 EVEPGDRVVVKDGVM 275 (293)
T ss_pred ccCCCCEEEEecCce
Confidence 466777777766543
No 145
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=26.69 E-value=86 Score=17.82 Aligned_cols=11 Identities=45% Similarity=0.715 Sum_probs=7.4
Q ss_pred CCCCCEEEEcC
Q psy2751 20 IVLGDVVDVKF 30 (102)
Q Consensus 20 l~~GDii~l~~ 30 (102)
+.+||.|.++.
T Consensus 45 I~~GD~V~Ve~ 55 (68)
T TIGR00008 45 ILPGDKVKVEL 55 (68)
T ss_pred ECCCCEEEEEE
Confidence 56777777754
No 146
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=26.69 E-value=42 Score=21.32 Aligned_cols=15 Identities=47% Similarity=0.574 Sum_probs=12.1
Q ss_pred cCCCCCCEEEEcCCC
Q psy2751 18 EDIVLGDVVDVKFGD 32 (102)
Q Consensus 18 ~~l~~GDii~l~~g~ 32 (102)
..+.+||.|.+++.+
T Consensus 4 ~~i~vGD~V~v~~d~ 18 (130)
T cd04712 4 LTIRVGDVVSVERDD 18 (130)
T ss_pred CEEeCCCEEEEcCCC
Confidence 457889999998765
No 147
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=26.25 E-value=81 Score=27.90 Aligned_cols=30 Identities=30% Similarity=0.201 Sum_probs=25.1
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCC
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFG 31 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g 31 (102)
+++.++.+|...++.+.+|.+||.|.+..+
T Consensus 1013 HpvLv~~gggl~wkkA~ELk~GD~I~ip~~ 1042 (1337)
T PRK14714 1013 HAMLVWDGGYLEKKRAFEVKEGDAVPVPEG 1042 (1337)
T ss_pred ceEEEecCCceEEEeHHHcCCCCEEeeccc
Confidence 356677888999999999999999999643
No 148
>PF12852 Cupin_6: Cupin
Probab=26.17 E-value=1.2e+02 Score=19.83 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=11.8
Q ss_pred ccCCCCCCEEEEcCCC
Q psy2751 17 AEDIVLGDVVDVKFGD 32 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~ 32 (102)
.-.|.+||++.+..|.
T Consensus 56 ~~~L~~GDivllp~g~ 71 (186)
T PF12852_consen 56 PIRLEAGDIVLLPRGT 71 (186)
T ss_pred eEEecCCCEEEEcCCC
Confidence 3567888888887764
No 149
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=26.05 E-value=1.3e+02 Score=17.48 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=10.5
Q ss_pred EEccCCCCCCEEEEc
Q psy2751 15 VRAEDIVLGDVVDVK 29 (102)
Q Consensus 15 i~~~~l~~GDii~l~ 29 (102)
.+.+++.+|||+.+.
T Consensus 66 ~~v~~a~aGdIv~i~ 80 (93)
T cd03700 66 EPVDEVPAGNIVLIV 80 (93)
T ss_pred EEccccCCCCEEEEE
Confidence 456777777777774
No 150
>PF11871 DUF3391: Domain of unknown function (DUF3391); InterPro: IPR021812 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 122 to 139 amino acids in length. This domain is found associated with PF01966 from PFAM.
Probab=25.85 E-value=43 Score=20.54 Aligned_cols=19 Identities=11% Similarity=-0.025 Sum_probs=16.3
Q ss_pred EEEEEccCCCCCCEEEEcC
Q psy2751 12 KLTVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 12 ~~~i~~~~l~~GDii~l~~ 30 (102)
.+.|++++|+||..|..-.
T Consensus 2 ~kkI~v~~L~~GM~V~~~~ 20 (128)
T PF11871_consen 2 LKKIPVDQLKPGMYVSRLD 20 (128)
T ss_pred ceEEEHHHCCCCcEEEecC
Confidence 3679999999999998865
No 151
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=25.20 E-value=73 Score=17.09 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=10.8
Q ss_pred EEeCCeEE-EEEccCCCCCCEEEE
Q psy2751 6 VIRQGEKL-TVRAEDIVLGDVVDV 28 (102)
Q Consensus 6 v~r~g~~~-~i~~~~l~~GDii~l 28 (102)
+.|++... .-+-..|.+||++.+
T Consensus 33 i~R~~~~~~p~~~~~l~~gD~l~v 56 (71)
T PF02080_consen 33 IKRGGEIIIPDGDTVLQAGDILIV 56 (71)
T ss_dssp EEETEEEES--TT-BE-TTEEEEE
T ss_pred EEECCEEECCCCCCEECCCCEEEE
Confidence 44663222 122456777888776
No 152
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=25.04 E-value=94 Score=17.90 Aligned_cols=12 Identities=42% Similarity=0.191 Sum_probs=6.7
Q ss_pred CCCCCCEEEEcC
Q psy2751 19 DIVLGDVVDVKF 30 (102)
Q Consensus 19 ~l~~GDii~l~~ 30 (102)
.+.+||.|.+.+
T Consensus 38 wI~~GD~V~Ve~ 49 (77)
T cd05793 38 WINEGDIVLVAP 49 (77)
T ss_pred EEcCCCEEEEEe
Confidence 455666666643
No 153
>PRK05573 rplU 50S ribosomal protein L21; Validated
Probab=24.94 E-value=1.3e+02 Score=18.37 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=10.0
Q ss_pred CCCCEEEEc-----CCCEeCCceEEE
Q psy2751 21 VLGDVVDVK-----FGDRIPADIRII 41 (102)
Q Consensus 21 ~~GDii~l~-----~g~~vPaD~~ll 41 (102)
.+||.+.+. +|+.+-.|-+|+
T Consensus 15 ~~Gd~i~v~~l~~~~G~~i~l~~VL~ 40 (103)
T PRK05573 15 EEGDVIKVEKLDAEVGDTVEFDEVLL 40 (103)
T ss_pred eCCCEEEEcccCCCCCCEEEEeEEEE
Confidence 445555553 344444444444
No 154
>cd06462 Peptidase_S24_S26 The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families. The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the tr
Probab=24.90 E-value=86 Score=17.14 Aligned_cols=14 Identities=36% Similarity=0.249 Sum_probs=8.9
Q ss_pred CCCCCEEEEcCCCE
Q psy2751 20 IVLGDVVDVKFGDR 33 (102)
Q Consensus 20 l~~GDii~l~~g~~ 33 (102)
+..||++.+.+...
T Consensus 14 i~~gd~v~i~~~~~ 27 (84)
T cd06462 14 IPDGDLVLVDKSSY 27 (84)
T ss_pred ccCCCEEEEEecCC
Confidence 56677777666554
No 155
>PF14168 YjzC: YjzC-like protein
Probab=24.78 E-value=72 Score=17.53 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=13.2
Q ss_pred CCCCCEEEEcCCCEeC
Q psy2751 20 IVLGDVVDVKFGDRIP 35 (102)
Q Consensus 20 l~~GDii~l~~g~~vP 35 (102)
+.-+-.|.|+.||++|
T Consensus 29 v~~p~~v~l~~Gd~fP 44 (57)
T PF14168_consen 29 VNNPKEVKLKKGDRFP 44 (57)
T ss_pred cCCCcEEEecCCCcCc
Confidence 5566689999999988
No 156
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=24.38 E-value=62 Score=21.37 Aligned_cols=15 Identities=33% Similarity=0.414 Sum_probs=7.8
Q ss_pred CCCCCEEEEcCCCEe
Q psy2751 20 IVLGDVVDVKFGDRI 34 (102)
Q Consensus 20 l~~GDii~l~~g~~v 34 (102)
..+||++.+..|..|
T Consensus 117 A~~GDvi~iPkGs~I 131 (152)
T PF06249_consen 117 AKPGDVIFIPKGSTI 131 (152)
T ss_dssp EETT-EEEE-TT-EE
T ss_pred EcCCcEEEECCCCEE
Confidence 356777777777664
No 157
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=24.32 E-value=69 Score=14.93 Aligned_cols=19 Identities=32% Similarity=0.221 Sum_probs=11.0
Q ss_pred CCCEEEEcCCCEeCCceEE
Q psy2751 22 LGDVVDVKFGDRIPADIRI 40 (102)
Q Consensus 22 ~GDii~l~~g~~vPaD~~l 40 (102)
+||.+.+..|..-=--|.+
T Consensus 1 ~Gd~V~V~~G~~~G~~G~I 19 (32)
T PF00467_consen 1 VGDTVKVISGPFKGKIGKI 19 (32)
T ss_dssp TTSEEEESSSTTTTEEEEE
T ss_pred CCCEEEEeEcCCCCceEEE
Confidence 5788888776543333333
No 158
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=24.31 E-value=95 Score=17.96 Aligned_cols=11 Identities=36% Similarity=0.293 Sum_probs=7.2
Q ss_pred CCCCCEEEEcC
Q psy2751 20 IVLGDVVDVKF 30 (102)
Q Consensus 20 l~~GDii~l~~ 30 (102)
+.+||.|.+.+
T Consensus 39 I~~GD~VlV~~ 49 (78)
T cd04456 39 IKRGDFLIVDP 49 (78)
T ss_pred EcCCCEEEEEe
Confidence 66677777754
No 159
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=24.24 E-value=52 Score=21.48 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=14.5
Q ss_pred eEEEEEcc---CCCCCCEEEE
Q psy2751 11 EKLTVRAE---DIVLGDVVDV 28 (102)
Q Consensus 11 ~~~~i~~~---~l~~GDii~l 28 (102)
.|+.|+.. +++.|||+..
T Consensus 64 G~~~I~~~~~~~~q~GDI~I~ 84 (145)
T PF05382_consen 64 GFKKISENVDWNLQRGDIFIW 84 (145)
T ss_pred CcEEeccCCcccccCCCEEEE
Confidence 36777765 8999999987
No 160
>PF13550 Phage-tail_3: Putative phage tail protein
Probab=24.05 E-value=54 Score=20.71 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=13.3
Q ss_pred EEccCCCCCCEEEEcCC
Q psy2751 15 VRAEDIVLGDVVDVKFG 31 (102)
Q Consensus 15 i~~~~l~~GDii~l~~g 31 (102)
.....|.|||+|.|.-.
T Consensus 135 ~~~~~l~pGDvi~l~~~ 151 (164)
T PF13550_consen 135 PDGLALEPGDVIALSDD 151 (164)
T ss_pred hhhccCCCCCEEEEEeC
Confidence 44567999999999744
No 161
>KOG0024|consensus
Probab=23.45 E-value=57 Score=24.51 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.6
Q ss_pred EccCCCCCCEEEEcCCC
Q psy2751 16 RAEDIVLGDVVDVKFGD 32 (102)
Q Consensus 16 ~~~~l~~GDii~l~~g~ 32 (102)
..+.|++||.|.+++|-
T Consensus 79 ~Vk~LkVGDrVaiEpg~ 95 (354)
T KOG0024|consen 79 EVKHLKVGDRVAIEPGL 95 (354)
T ss_pred cccccccCCeEEecCCC
Confidence 36889999999999983
No 162
>PF03339 Pox_L3_FP4: Poxvirus L3/FP4 protein; InterPro: IPR005007 This is a family of proteins expressed by members of the Poxviridae.
Probab=23.36 E-value=1.7e+02 Score=21.69 Aligned_cols=16 Identities=25% Similarity=0.067 Sum_probs=9.5
Q ss_pred CCCCCCEEEEcCCCEe
Q psy2751 19 DIVLGDVVDVKFGDRI 34 (102)
Q Consensus 19 ~l~~GDii~l~~g~~v 34 (102)
-..||-+|++..+|..
T Consensus 252 ~~epGtlV~v~~~D~~ 267 (319)
T PF03339_consen 252 FTEPGTLVYVPRNDAY 267 (319)
T ss_pred cCCCceEEEEEcCCeE
Confidence 4556666666655553
No 163
>PRK06666 fliM flagellar motor switch protein FliM; Validated
Probab=22.83 E-value=74 Score=23.21 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=13.4
Q ss_pred EEccCCCCCCEEEEcCCCEeCCce
Q psy2751 15 VRAEDIVLGDVVDVKFGDRIPADI 38 (102)
Q Consensus 15 i~~~~l~~GDii~l~~g~~vPaD~ 38 (102)
+.-.++..+|++.+++||.+|.|.
T Consensus 266 L~~~~i~l~dll~L~vGDVI~L~~ 289 (337)
T PRK06666 266 LGEIKLTLSEILNLKVGDVIPLEK 289 (337)
T ss_pred EecceeeHHHHhCCCCCCEEEeCC
Confidence 334455556666666666666543
No 164
>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins. It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.
Probab=22.79 E-value=67 Score=17.68 Aligned_cols=23 Identities=30% Similarity=0.033 Sum_probs=11.0
Q ss_pred cCCCCCCEEEEcCCCEeCCceEE
Q psy2751 18 EDIVLGDVVDVKFGDRIPADIRI 40 (102)
Q Consensus 18 ~~l~~GDii~l~~g~~vPaD~~l 40 (102)
-.+.+||.+.+.+-+.=+--|.+
T Consensus 40 iwI~~GD~V~V~~~~~d~~kG~I 62 (65)
T PF01176_consen 40 IWIKRGDFVLVEPSPYDKVKGRI 62 (65)
T ss_dssp C---TTEEEEEEESTTCTTEEEE
T ss_pred EecCCCCEEEEEecccCCCeEEE
Confidence 35778888888643222444444
No 165
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=22.75 E-value=71 Score=21.39 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=11.1
Q ss_pred CCCCEEEEcCCCEe
Q psy2751 21 VLGDVVDVKFGDRI 34 (102)
Q Consensus 21 ~~GDii~l~~g~~v 34 (102)
.+||++.+..|..|
T Consensus 141 ~aGDvifiPKgssI 154 (176)
T COG4766 141 GAGDVIFIPKGSSI 154 (176)
T ss_pred CCCcEEEecCCCeE
Confidence 57889888888764
No 166
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=22.74 E-value=57 Score=23.28 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=20.1
Q ss_pred EEEeC--CeEEEEEccCCCCCCEEEEc--CCCEe
Q psy2751 5 TVIRQ--GEKLTVRAEDIVLGDVVDVK--FGDRI 34 (102)
Q Consensus 5 ~v~r~--g~~~~i~~~~l~~GDii~l~--~g~~v 34 (102)
.|+|. |..-..-.++|++||.|.+. .|+.+
T Consensus 71 sVk~~~~G~~S~~Lh~~lk~Gd~l~v~~P~G~F~ 104 (266)
T COG1018 71 SVKREDGGGGSNWLHDHLKVGDTLEVSAPAGDFV 104 (266)
T ss_pred EEEEeCCCcccHHHHhcCCCCCEEEEecCCCCcc
Confidence 44443 45555556799999999995 55553
No 167
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=22.72 E-value=70 Score=19.05 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=6.8
Q ss_pred CCCCCCEEEEc
Q psy2751 19 DIVLGDVVDVK 29 (102)
Q Consensus 19 ~l~~GDii~l~ 29 (102)
++.+||.+.+.
T Consensus 57 ~vk~GD~Vl~~ 67 (93)
T cd00320 57 SVKVGDKVLFP 67 (93)
T ss_pred cccCCCEEEEC
Confidence 56666666664
No 168
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=22.60 E-value=1.1e+02 Score=17.92 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=13.8
Q ss_pred EccCCCCCCEEEEcCCCEeCCceEEEeeC
Q psy2751 16 RAEDIVLGDVVDVKFGDRIPADIRIIECR 44 (102)
Q Consensus 16 ~~~~l~~GDii~l~~g~~vPaD~~ll~~~ 44 (102)
+...|.|||.+.+ .+..||.|..-.
T Consensus 39 ~L~~L~pGq~l~f----~~d~~g~L~~L~ 63 (85)
T PF04225_consen 39 PLTRLKPGQTLEF----QLDEDGQLTALR 63 (85)
T ss_dssp -GGG--TT-EEEE----EE-TTS-EEEEE
T ss_pred hHhhCCCCCEEEE----EECCCCCEEEEE
Confidence 5678999999999 455677775543
No 169
>PRK05933 type III secretion system protein; Validated
Probab=22.36 E-value=54 Score=24.63 Aligned_cols=15 Identities=7% Similarity=0.138 Sum_probs=7.1
Q ss_pred cEEEeeCEEeeeeEE
Q psy2751 76 NLGFFSTNAVEGNAF 90 (102)
Q Consensus 76 ~~v~~Gt~v~~g~~~ 90 (102)
++..-|..+..|+++
T Consensus 345 DI~VNGrLIARGEVV 359 (372)
T PRK05933 345 DIILNGAKVGRGEII 359 (372)
T ss_pred EEEECCEEEeeeeEE
Confidence 344445555555443
No 170
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=22.33 E-value=1e+02 Score=17.66 Aligned_cols=12 Identities=42% Similarity=0.828 Sum_probs=6.3
Q ss_pred ccCCCCCCEEEE
Q psy2751 17 AEDIVLGDVVDV 28 (102)
Q Consensus 17 ~~~l~~GDii~l 28 (102)
...+.+||.|.+
T Consensus 42 ~~~~~~Gd~V~v 53 (78)
T cd04486 42 GADVAVGDLVRV 53 (78)
T ss_pred CCCCCCCCEEEE
Confidence 345555555555
No 171
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=22.29 E-value=34 Score=26.79 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=33.6
Q ss_pred EEEEccCCCCCCEEEEcCCCEeC-----CceEEEeeCc----------eEEEccccCCCCc
Q psy2751 13 LTVRAEDIVLGDVVDVKFGDRIP-----ADIRIIECRG----------FKVDNSSLTGESE 58 (102)
Q Consensus 13 ~~i~~~~l~~GDii~l~~g~~vP-----aD~~ll~~~~----------~~vd~s~ltGEs~ 58 (102)
..+...--.||||+.-..|..|- |.|||+-.++ +.||-+-|||--.
T Consensus 308 Nm~~g~A~rPGDVits~~GkTVEV~NTDAEGRLVLADaLtYA~~~kp~~iID~ATLTGA~~ 368 (485)
T COG0260 308 NMPSGNAYRPGDVITSMNGKTVEVLNTDAEGRLVLADALTYAEELKPDLIIDVATLTGAAV 368 (485)
T ss_pred cCCCCCCCCCCCeEEecCCcEEEEcccCccHHHHHHHHHHHHHHcCCCEEEEehhhHhHHH
Confidence 34566778999999999998765 4455544321 7999999999654
No 172
>KOG3403|consensus
Probab=22.28 E-value=73 Score=20.49 Aligned_cols=24 Identities=25% Similarity=0.062 Sum_probs=16.5
Q ss_pred CCCCCCEEEEc--CCCEeCCceEEEe
Q psy2751 19 DIVLGDVVDVK--FGDRIPADIRIIE 42 (102)
Q Consensus 19 ~l~~GDii~l~--~g~~vPaD~~ll~ 42 (102)
.+.+||||++. .++---||.++-.
T Consensus 70 wi~~GDIiLv~lRD~qd~kaDvilKY 95 (145)
T KOG3403|consen 70 WINQGDIILVGLRDYQDDKADVILKY 95 (145)
T ss_pred eecCCCEEEEeeecccccccceehhh
Confidence 46789999984 4555668876643
No 173
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=22.27 E-value=1.4e+02 Score=15.99 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=13.4
Q ss_pred EEEEeCCeEEE---EEccCCCCCCEEEE
Q psy2751 4 ATVIRQGEKLT---VRAEDIVLGDVVDV 28 (102)
Q Consensus 4 ~~v~r~g~~~~---i~~~~l~~GDii~l 28 (102)
+.|..+++... .+...|..||.|.+
T Consensus 30 v~v~vN~~iv~~~~~~~~~L~~gD~vei 57 (64)
T TIGR01683 30 VAVAVNGEIVPRSEWDDTILKEGDRIEI 57 (64)
T ss_pred EEEEECCEEcCHHHcCceecCCCCEEEE
Confidence 34455655432 22234777777766
No 174
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=22.12 E-value=63 Score=20.70 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=12.5
Q ss_pred EccCCCCCCEEEEcC
Q psy2751 16 RAEDIVLGDVVDVKF 30 (102)
Q Consensus 16 ~~~~l~~GDii~l~~ 30 (102)
...+|++||.|.+..
T Consensus 69 ~L~~l~~GD~I~v~~ 83 (144)
T cd05829 69 RLGDLRKGDKVEVTR 83 (144)
T ss_pred chhcCCCCCEEEEEE
Confidence 347899999999975
No 175
>TIGR03635 S17_bact 30S ribosomal protein S17. This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17.
Probab=21.96 E-value=1.2e+02 Score=17.28 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=12.7
Q ss_pred EEccCCCCCCEEEEcCC
Q psy2751 15 VRAEDIVLGDVVDVKFG 31 (102)
Q Consensus 15 i~~~~l~~GDii~l~~g 31 (102)
-+..+..+||+|.+.+.
T Consensus 44 D~~~~~k~GD~V~I~ec 60 (71)
T TIGR03635 44 DENNECKVGDVVRIIET 60 (71)
T ss_pred CCCCCCCCCCEEEEEEc
Confidence 34457899999999654
No 176
>COG2932 Predicted transcriptional regulator [Transcription]
Probab=21.81 E-value=97 Score=20.96 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=17.1
Q ss_pred CCCCCCEEEEcCCCEeCCceEE
Q psy2751 19 DIVLGDVVDVKFGDRIPADIRI 40 (102)
Q Consensus 19 ~l~~GDii~l~~g~~vPaD~~l 40 (102)
.+..||++.+.+|....-|+++
T Consensus 136 ~~~~Gd~ilVd~~~~~~~gd~v 157 (214)
T COG2932 136 TYEDGDTLLVDPGVNTRRGDRV 157 (214)
T ss_pred cccCCCEEEECCCCceeeCCEE
Confidence 4677999999999987766644
No 177
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=21.75 E-value=1.7e+02 Score=16.69 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=7.8
Q ss_pred EEEccCCCCCCEEEE
Q psy2751 14 TVRAEDIVLGDVVDV 28 (102)
Q Consensus 14 ~i~~~~l~~GDii~l 28 (102)
++-.-.|.+||.+..
T Consensus 21 Rv~sG~l~~~~~v~~ 35 (86)
T cd03699 21 RVFDGTLKKGDKIRF 35 (86)
T ss_pred EEEcCEEcCCCEEEE
Confidence 444555555555543
No 178
>PF00829 Ribosomal_L21p: Ribosomal prokaryotic L21 protein; InterPro: IPR001787 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L21 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L21 is known to bind to the 23S rRNA in the presence of L20. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Bacterial L21. Marchantia polymorpha chloroplast L21. Cyanelle L21. Plant chloroplast L21 (nuclear-encoded). Bacterial L21 is a protein of about 100 amino-acid residues, the mature form of the spinach chloroplast L21 has 200 residues.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XG0_V 2X9S_V 2XG2_V 3UZ1_2 2Y19_V 2WDL_V 3V23_V 2WRO_V 2WRL_V 2Y11_V ....
Probab=21.62 E-value=40 Score=20.33 Aligned_cols=12 Identities=17% Similarity=-0.011 Sum_probs=5.2
Q ss_pred EeeCEEeeeeEE
Q psy2751 79 FFSTNAVEGNAF 90 (102)
Q Consensus 79 ~~Gt~v~~g~~~ 90 (102)
..++.+..+...
T Consensus 59 V~a~V~~~~k~~ 70 (96)
T PF00829_consen 59 VEATVLEHGKGK 70 (96)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEeccCCC
Confidence 334444444443
No 179
>TIGR01397 fliM_switch flagellar motor switch protein FliM. Members of this family are the flagellar motor switch protein FliM. The family excludes FliM homologs that lack an N-terminal region critical to interaction with phosphorylated CheY. One set lacking this N-terminal region is found in Rhizobium meliloti, in which the direction of flagellar rotation is not reversible (i.e. the FliM homolog does not act to reverse the motor direction), and in related species. Another is found in Buchnera, an obligate intracellular endosymbiont with genes for many of the components of the flagellar apparatus, but not, apparently, for flagellin iself.
Probab=21.53 E-value=24 Score=25.52 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=15.3
Q ss_pred EEccCCCCCCEEEEcCCCEeCCce
Q psy2751 15 VRAEDIVLGDVVDVKFGDRIPADI 38 (102)
Q Consensus 15 i~~~~l~~GDii~l~~g~~vPaD~ 38 (102)
+.-.++..+|++.+++||.+|.|-
T Consensus 261 L~~~~i~l~dll~L~~GDVI~L~~ 284 (320)
T TIGR01397 261 LGEVEVSLRQLLNLQVGDVIPLNT 284 (320)
T ss_pred EecceeEHHHHhCCCCCCEEEeCC
Confidence 444566667777777777777653
No 180
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=21.47 E-value=64 Score=22.43 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=8.9
Q ss_pred CCCCCEEEEcCCCE
Q psy2751 20 IVLGDVVDVKFGDR 33 (102)
Q Consensus 20 l~~GDii~l~~g~~ 33 (102)
|++||+|.+.....
T Consensus 151 L~~GD~I~V~~~~~ 164 (239)
T TIGR03028 151 VAGGDIIYVDRAPV 164 (239)
T ss_pred EcCCCEEEEcCCcc
Confidence 66777777765443
No 181
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=21.29 E-value=1.3e+02 Score=22.72 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=14.8
Q ss_pred EEEccCCCCCCEEEEcC
Q psy2751 14 TVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 14 ~i~~~~l~~GDii~l~~ 30 (102)
.++..+|.|||-|++..
T Consensus 310 ~vsVt~Lk~GD~VL~~~ 326 (344)
T PRK02290 310 PVSVVDLKPGDEVLGYL 326 (344)
T ss_pred EeeeeecCCCCEEEEEe
Confidence 68899999999999854
No 182
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=21.29 E-value=56 Score=23.81 Aligned_cols=15 Identities=27% Similarity=0.162 Sum_probs=9.0
Q ss_pred CCCCCCEEEEcCCCE
Q psy2751 19 DIVLGDVVDVKFGDR 33 (102)
Q Consensus 19 ~l~~GDii~l~~g~~ 33 (102)
.|.|||++++..|-.
T Consensus 179 ~L~pGD~LYlPrG~~ 193 (319)
T PF08007_consen 179 VLEPGDVLYLPRGWW 193 (319)
T ss_dssp EE-TT-EEEE-TT-E
T ss_pred EECCCCEEEECCCcc
Confidence 478999999988865
No 183
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=21.23 E-value=72 Score=18.70 Aligned_cols=16 Identities=31% Similarity=0.144 Sum_probs=13.3
Q ss_pred ccCCCCCCEEEEcCCC
Q psy2751 17 AEDIVLGDVVDVKFGD 32 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~ 32 (102)
.++|++||-|....|-
T Consensus 35 ~~~L~~Gd~VvT~gGi 50 (84)
T TIGR00739 35 IESLKKGDKVLTIGGI 50 (84)
T ss_pred HHhCCCCCEEEECCCe
Confidence 4689999999988874
No 184
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.10 E-value=1.3e+02 Score=23.06 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=17.9
Q ss_pred EEEEeCCeEEE-EEccCCCCCCEEEEc
Q psy2751 4 ATVIRQGEKLT-VRAEDIVLGDVVDVK 29 (102)
Q Consensus 4 ~~v~r~g~~~~-i~~~~l~~GDii~l~ 29 (102)
|.++|+++.-- -++--|+|||++++-
T Consensus 180 vl~YRN~klll~~~slvlqp~D~lLVv 206 (471)
T COG3400 180 VLLYRNDKLLLSTKSLVLQPRDILLVV 206 (471)
T ss_pred EEEEECCEEEEeccceEecCCCEEEEe
Confidence 56778888643 345567888888774
No 185
>cd06552 ASCH_yqfb_like ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=21.04 E-value=1.7e+02 Score=17.08 Aligned_cols=27 Identities=33% Similarity=0.532 Sum_probs=19.9
Q ss_pred cCCCCCCEEEEcCCCEeCCceEEEeeC
Q psy2751 18 EDIVLGDVVDVKFGDRIPADIRIIECR 44 (102)
Q Consensus 18 ~~l~~GDii~l~~g~~vPaD~~ll~~~ 44 (102)
..+.+||++.+..++...+-..+.+-.
T Consensus 27 ~~~~~Gd~~~~~~~~~~~~~~~v~~V~ 53 (100)
T cd06552 27 SHLKPGDVVEVHTGERIFGEAEITSVE 53 (100)
T ss_pred cCCCCCCEEEEEECCEEEEEEEEEEEE
Confidence 458999999998887666666665543
No 186
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=20.95 E-value=1.7e+02 Score=18.38 Aligned_cols=15 Identities=33% Similarity=0.403 Sum_probs=11.1
Q ss_pred CCCCCCEEEEcCCCE
Q psy2751 19 DIVLGDVVDVKFGDR 33 (102)
Q Consensus 19 ~l~~GDii~l~~g~~ 33 (102)
++.+||++.+.+|..
T Consensus 87 ~l~~Gdv~~vP~G~~ 101 (144)
T PF00190_consen 87 RLKAGDVFVVPAGHP 101 (144)
T ss_dssp EEETTEEEEE-TT-E
T ss_pred eeecccceeecccee
Confidence 499999999988865
No 187
>COG0298 HypC Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.83 E-value=1.2e+02 Score=17.99 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=13.1
Q ss_pred cCCCCCCEEEEcCCCE
Q psy2751 18 EDIVLGDVVDVKFGDR 33 (102)
Q Consensus 18 ~~l~~GDii~l~~g~~ 33 (102)
+++..||.+++..|--
T Consensus 37 ~~v~~GdyVLVHvGfA 52 (82)
T COG0298 37 EEVKVGDYVLVHVGFA 52 (82)
T ss_pred CccccCCEEEEEeeEE
Confidence 3888999999988854
No 188
>PRK08432 flagellar motor switch protein FliY; Validated
Probab=20.74 E-value=87 Score=22.64 Aligned_cols=25 Identities=16% Similarity=0.413 Sum_probs=15.9
Q ss_pred EEEccCCCCCCEEEEcCCCEeCCce
Q psy2751 14 TVRAEDIVLGDVVDVKFGDRIPADI 38 (102)
Q Consensus 14 ~i~~~~l~~GDii~l~~g~~vPaD~ 38 (102)
.+....+.+.|++.+++||.|+.|-
T Consensus 213 ~lG~~~~~i~dlL~L~~GdVI~Ld~ 237 (283)
T PRK08432 213 RIGQKKMLLKDVLSMDIGSVVELNQ 237 (283)
T ss_pred EEecCcccHHHHhCCCCCCEEEeCC
Confidence 3445666667777777777766553
No 189
>cd04498 hPOT1_OB2 hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1). POT1 proteins bind to the single-stranded (ss) 3-prime ends of the telomere. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB2) which cooperate to bind telomeric ssDNA. OB1 makes more extensive contact with the ssDNA than OB2. OB2 protects the 3' end of the ssDNA. hPOT1 is implicated in telomere length regulation.
Probab=20.61 E-value=62 Score=20.57 Aligned_cols=14 Identities=29% Similarity=0.366 Sum_probs=11.2
Q ss_pred ccCCCCCCEEEEcC
Q psy2751 17 AEDIVLGDVVDVKF 30 (102)
Q Consensus 17 ~~~l~~GDii~l~~ 30 (102)
+++|.+||.|.|+.
T Consensus 74 ar~lK~GdfV~L~N 87 (123)
T cd04498 74 AKSLKPGDFVRIYN 87 (123)
T ss_pred HhhCCCCCEEEEEE
Confidence 56699999998864
No 190
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=20.60 E-value=2.3e+02 Score=17.61 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=11.0
Q ss_pred CCCEEEEcCCCEeCCce
Q psy2751 22 LGDVVDVKFGDRIPADI 38 (102)
Q Consensus 22 ~GDii~l~~g~~vPaD~ 38 (102)
.||.|.|.+|..+-.|.
T Consensus 11 ~g~~V~I~~g~~v~lD~ 27 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDV 27 (125)
T ss_pred CCCEEEECCCCEEEEcC
Confidence 57777777776654443
No 191
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=20.13 E-value=74 Score=23.68 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=16.1
Q ss_pred EEEeCCeEEEEEccC----CCCCCEEEEcCCCE
Q psy2751 5 TVIRQGEKLTVRAED----IVLGDVVDVKFGDR 33 (102)
Q Consensus 5 ~v~r~g~~~~i~~~~----l~~GDii~l~~g~~ 33 (102)
.|.++|+|..++... +.+||.+.+=.|++
T Consensus 253 QV~~~g~Wi~V~p~pgalVVNiGD~L~~~SNG~ 285 (361)
T PLN02758 253 QILKDNTWVPVHPVPNALVINIGDTLEVLTNGK 285 (361)
T ss_pred eeeeCCEEEeCCCCCCeEEEEccchhhhhcCCe
Confidence 456778888776532 34455554444433
No 192
>KOG1535|consensus
Probab=20.04 E-value=72 Score=22.31 Aligned_cols=11 Identities=27% Similarity=0.317 Sum_probs=7.8
Q ss_pred cCCCCCCEEEE
Q psy2751 18 EDIVLGDVVDV 28 (102)
Q Consensus 18 ~~l~~GDii~l 28 (102)
-.|.+||+|.=
T Consensus 175 ~tL~~GDvILT 185 (217)
T KOG1535|consen 175 MTLEPGDVILT 185 (217)
T ss_pred eeecCCCEEEe
Confidence 45678888863
No 193
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=20.03 E-value=1.5e+02 Score=23.68 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=22.4
Q ss_pred cCCCCCCEEEEcCCCEeC--CceEEEeeC
Q psy2751 18 EDIVLGDVVDVKFGDRIP--ADIRIIECR 44 (102)
Q Consensus 18 ~~l~~GDii~l~~g~~vP--aD~~ll~~~ 44 (102)
..+.+|+-+++-.|..+| ||+++-.-.
T Consensus 96 ~~~~~g~av~I~TGa~vP~gad~Vi~~E~ 124 (633)
T PRK14498 96 VEVEPGEAVEIATGAPIPRGADAVVMVED 124 (633)
T ss_pred cccCCCeEEEECCCCCCCCCCCEEEEEEE
Confidence 468899999999999999 888775543
Done!