Query psy2751
Match_columns 102
No_of_seqs 133 out of 1269
Neff 8.3
Searched_HMMs 29240
Date Sat Aug 17 00:18:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hc8_A PACS, cation-transporti 100.0 4.8E-32 1.6E-36 169.5 9.4 89 2-101 12-100 (113)
2 2kij_A Copper-transporting ATP 100.0 2E-30 7E-35 164.4 8.0 89 2-101 18-112 (124)
3 2zxe_A Na, K-ATPase alpha subu 100.0 4.4E-28 1.5E-32 194.3 11.2 100 2-101 172-271 (1028)
4 3ixz_A Potassium-transporting 99.9 4.8E-28 1.7E-32 194.1 10.9 100 2-101 177-276 (1034)
5 1mhs_A Proton pump, plasma mem 99.9 1.3E-26 4.6E-31 184.2 8.1 89 3-101 179-268 (920)
6 3j08_A COPA, copper-exporting 99.9 6.8E-26 2.3E-30 174.8 9.4 89 2-101 133-221 (645)
7 3ar4_A Sarcoplasmic/endoplasmi 99.9 1.7E-25 5.8E-30 178.9 9.9 100 2-101 126-232 (995)
8 3j09_A COPA, copper-exporting 99.9 1.6E-25 5.6E-30 174.4 9.4 89 2-101 211-299 (723)
9 3rfu_A Copper efflux ATPase; a 99.9 7.5E-25 2.6E-29 171.1 7.0 89 2-101 225-314 (736)
10 3b8c_A ATPase 2, plasma membra 99.9 3.1E-27 1.1E-31 187.3 -6.9 89 3-101 131-219 (885)
11 2jmz_A Hypothetical protein MJ 94.3 0.06 2E-06 35.2 4.4 34 2-35 103-136 (186)
12 2lcj_A PAB POLC intein; hydrol 93.4 0.15 5.2E-06 33.2 5.0 34 2-35 93-126 (185)
13 1at0_A 17-hedgehog; developmen 85.9 1.7 5.7E-05 27.2 5.0 29 3-31 73-103 (145)
14 4e2u_A PHO RADA intein; HINT-f 81.6 1.7 5.9E-05 27.7 3.7 28 3-31 98-125 (168)
15 2cw8_A Endonuclease PI-pkoii; 78.8 3.2 0.00011 31.3 4.9 29 2-30 96-124 (537)
16 3p42_A Predicted protein; beta 71.8 4.6 0.00016 27.3 3.8 30 2-31 166-203 (236)
17 2k1g_A Lipoprotein SPR; soluti 71.4 1.6 5.6E-05 27.1 1.4 20 13-32 61-80 (135)
18 1am2_A MXE GYRA intein; protei 64.3 12 0.00042 24.3 4.7 20 11-30 89-108 (199)
19 2z1c_A Hydrogenase expression/ 63.9 17 0.00057 20.3 5.2 30 4-33 17-49 (75)
20 3sgi_A DNA ligase; HET: DNA AM 60.4 4.1 0.00014 31.6 1.9 27 15-41 374-402 (615)
21 2jyx_A Lipoprotein SPR; soluti 59.8 4.3 0.00015 24.9 1.7 20 13-32 61-80 (136)
22 2j58_A WZA, outer membrane lip 58.1 7.8 0.00027 27.8 3.0 30 2-31 191-232 (359)
23 2e6z_A Transcription elongatio 56.3 6.7 0.00023 20.7 1.8 26 18-43 6-31 (59)
24 2in0_A Endonuclease PI-MTUI; h 55.1 9.1 0.00031 23.2 2.6 19 14-32 81-99 (139)
25 3gt2_A Putative uncharacterize 54.7 6.2 0.00021 24.4 1.8 19 13-31 83-101 (142)
26 3jxo_A TRKA-N domain protein; 54.0 16 0.00056 19.8 3.4 23 5-28 45-69 (86)
27 1dq3_A Endonuclease; PI-PFUI, 52.5 15 0.00052 26.8 3.8 27 3-29 100-127 (454)
28 3ne0_A Resuscitation promoting 52.4 8.3 0.00028 25.8 2.2 19 13-31 152-170 (214)
29 2ot2_A Hydrogenase isoenzymes 51.1 30 0.001 19.9 4.3 30 4-33 17-55 (90)
30 2owo_A DNA ligase; protein-DNA 51.0 4.8 0.00016 31.5 1.0 20 16-35 365-385 (671)
31 4glx_A DNA ligase; inhibitor, 50.7 3.7 0.00013 31.6 0.3 24 17-40 366-391 (586)
32 3pbi_A Invasion protein; pepti 50.6 7.6 0.00026 26.0 1.8 19 13-31 152-170 (214)
33 1dgs_A DNA ligase; AMP complex 48.9 5.6 0.00019 31.1 1.0 20 16-35 363-383 (667)
34 1d1n_A Initiation factor 2; be 47.1 42 0.0014 19.7 4.8 18 17-34 79-96 (99)
35 2if6_A Hypothetical protein YI 46.2 11 0.00039 24.0 2.1 16 17-32 2-17 (186)
36 2hbw_A NLP/P60 protein; NLP/P6 43.0 17 0.00057 24.5 2.6 20 13-32 154-173 (235)
37 3kmh_A D-lyxose isomerase; cup 42.9 39 0.0013 23.2 4.4 27 3-34 156-182 (246)
38 3v2d_V 50S ribosomal protein L 42.2 37 0.0013 20.0 3.7 22 20-42 14-40 (101)
39 3iuw_A Activating signal coint 39.7 35 0.0012 19.3 3.3 12 18-29 36-47 (83)
40 3db3_A E3 ubiquitin-protein li 39.6 8.3 0.00028 24.8 0.6 32 12-43 85-117 (161)
41 3d3r_A Hydrogenase assembly ch 38.4 58 0.002 19.2 4.2 30 3-32 39-72 (103)
42 3aqy_A Beta-1,3-glucan-binding 36.1 26 0.00088 20.7 2.4 23 7-29 55-78 (106)
43 1o9y_A HRCQ2; secretory protei 35.6 16 0.00056 20.4 1.4 12 18-29 34-45 (84)
44 3ie4_A GRAM-negative binding p 35.3 20 0.00069 21.3 1.8 22 7-28 54-76 (107)
45 2lkt_A Retinoic acid receptor 34.9 20 0.00068 21.4 1.8 16 16-31 4-19 (125)
46 1vct_A Hypothetical protein PH 33.9 31 0.0011 22.4 2.7 25 5-29 154-180 (205)
47 1mi8_A DNAB intein; all beta-s 33.7 27 0.00092 21.5 2.3 16 14-29 83-98 (158)
48 4hpe_A Putative cell WALL hydr 33.3 23 0.0008 24.7 2.1 18 13-30 242-259 (308)
49 4fdy_A Similar to lipoprotein, 32.6 27 0.00092 24.6 2.4 18 13-30 246-263 (313)
50 2kha_A Beta-1,3-glucan-binding 32.5 42 0.0014 20.6 3.0 23 7-29 64-87 (130)
51 2ww6_A Fibritin, T4 fibritin; 32.3 20 0.00068 16.0 1.1 13 3-15 11-23 (27)
52 4b6m_A Tubulin-specific chaper 31.6 34 0.0012 19.4 2.3 17 17-33 3-19 (84)
53 3c2q_A Uncharacterized conserv 31.0 43 0.0015 24.0 3.2 30 1-30 50-81 (345)
54 1o5u_A Novel thermotoga mariti 30.6 37 0.0013 19.4 2.4 14 19-32 71-84 (101)
55 1nz9_A Transcription antitermi 29.6 40 0.0014 17.2 2.3 42 19-61 4-49 (58)
56 2opk_A Hypothetical protein; p 29.3 71 0.0024 18.2 3.6 14 19-32 76-89 (112)
57 4gjz_A Lysine-specific demethy 29.2 24 0.00081 22.6 1.6 15 19-33 204-218 (235)
58 1o6a_A Putative flagellar moto 29.1 16 0.00053 21.1 0.6 11 19-29 39-49 (96)
59 2wfw_A ARC; ATP-binding protei 28.3 1E+02 0.0035 19.5 4.3 31 3-33 21-57 (153)
60 2cqa_A RUVB-like 2; TIP48, TIP 26.2 41 0.0014 19.6 2.0 13 18-30 61-73 (95)
61 1dm9_A Hypothetical 15.5 KD pr 25.7 45 0.0015 20.2 2.3 26 6-32 36-61 (133)
62 1v70_A Probable antibiotics sy 24.9 34 0.0012 18.5 1.5 15 18-32 69-83 (105)
63 3d0f_A Penicillin-binding 1 tr 24.9 17 0.00059 21.1 0.2 11 20-30 84-94 (106)
64 3bbn_D Ribosomal protein S4; s 24.8 31 0.001 22.8 1.4 27 6-32 116-142 (201)
65 3uep_A YSCQ-C, type III secret 24.7 19 0.00065 20.8 0.4 10 19-28 39-48 (96)
66 4dpz_X HRAS-like suppressor 2; 24.6 43 0.0015 20.7 2.0 15 17-31 5-19 (137)
67 3p8b_B Transcription antitermi 24.3 1.3E+02 0.0043 18.4 4.5 47 17-64 89-139 (152)
68 1uz5_A MOEA protein, 402AA lon 24.3 49 0.0017 24.0 2.6 28 17-44 90-119 (402)
69 1wu2_A MOEA protein, molybdopt 24.3 51 0.0018 23.8 2.7 28 17-44 92-121 (396)
70 3zvk_E VAPB2, antitoxin of tox 24.2 98 0.0034 17.0 3.8 29 1-29 1-31 (78)
71 2imz_A Endonuclease PI-MTUI; N 23.8 38 0.0013 20.9 1.7 16 14-29 81-96 (168)
72 2z0t_A Putative uncharacterize 23.8 20 0.00069 21.4 0.4 13 17-29 31-43 (109)
73 2k6p_A Uncharacterized protein 23.5 45 0.0015 18.5 1.9 22 7-29 29-50 (92)
74 3kw0_A Cysteine peptidase; str 23.3 39 0.0013 22.2 1.8 15 17-31 37-51 (214)
75 4dot_A Group XVI phospholipase 23.1 42 0.0014 20.9 1.8 16 16-31 4-19 (140)
76 3lwc_A Uncharacterized protein 22.9 42 0.0014 19.7 1.7 16 18-33 79-94 (119)
77 3r8s_R 50S ribosomal protein L 22.9 75 0.0026 18.6 2.8 21 21-41 15-40 (103)
78 1c05_A Ribosomal protein S4 de 22.6 45 0.0015 20.9 1.9 25 6-30 78-102 (159)
79 3h41_A NLP/P60 family protein; 22.5 47 0.0016 23.0 2.1 17 13-29 243-259 (311)
80 2vqe_D 30S ribosomal protein S 22.3 41 0.0014 22.2 1.7 25 6-30 126-150 (209)
81 3bcw_A Uncharacterized protein 22.0 47 0.0016 19.7 1.8 14 19-32 90-103 (123)
82 1rl2_A Protein (ribosomal prot 22.0 64 0.0022 20.0 2.4 22 7-28 36-58 (137)
83 1pcq_O Groes protein; chaperon 21.4 46 0.0016 19.4 1.6 21 18-38 57-80 (97)
84 2arc_A ARAC, arabinose operon 21.3 41 0.0014 19.9 1.5 17 17-33 57-73 (164)
85 2aef_A Calcium-gated potassium 21.1 94 0.0032 19.9 3.3 24 5-28 189-214 (234)
86 2ozj_A Cupin 2, conserved barr 21.0 48 0.0016 18.6 1.7 16 18-33 78-93 (114)
87 2b0a_A Hypothetical protein MJ 21.0 42 0.0014 21.6 1.5 18 15-32 76-93 (186)
88 2l1t_A Uncharacterized protein 20.8 30 0.001 20.7 0.7 34 20-55 39-73 (109)
89 2b8m_A Hypothetical protein MJ 20.6 45 0.0016 18.8 1.5 15 19-33 69-83 (117)
90 3d82_A Cupin 2, conserved barr 20.2 35 0.0012 18.5 0.9 16 18-33 70-85 (102)
91 1xne_A Hypothetical protein PF 20.2 54 0.0018 19.6 1.8 14 17-30 32-45 (113)
No 1
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=99.97 E-value=4.8e-32 Score=169.53 Aligned_cols=89 Identities=28% Similarity=0.381 Sum_probs=85.9
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
++++|+|+|+++.+++++|+|||+|.+++|++|||||+++++. +.+|||+|||||.|+.|.++ +.+|+|
T Consensus 12 ~~a~v~r~g~~~~i~~~~l~~GDiv~v~~G~~iPaDg~v~~g~-~~vdeS~LTGEs~pv~k~~g----------~~v~aG 80 (113)
T 2hc8_A 12 KTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGE-SYVDESMISGEPVPVLKSKG----------DEVFGA 80 (113)
T ss_dssp SEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECC-EEEECHHHHCCSSCEEECTT----------CEECTT
T ss_pred CEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEce-EEEEccccCCCCccEEECCC----------CEEEeC
Confidence 4688999999999999999999999999999999999999999 59999999999999999999 899999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|.+.++|+++|.+|+
T Consensus 81 t~~~~G~~~~~V~~~g~~T~ 100 (113)
T 2hc8_A 81 TINNTGVLKIRATRVGGETL 100 (113)
T ss_dssp CEECSSCEEEEEEECGGGSH
T ss_pred CEEeeceEEEEEEEecCcCH
Confidence 99999999999999999985
No 2
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=99.96 E-value=2e-30 Score=164.44 Aligned_cols=89 Identities=25% Similarity=0.302 Sum_probs=84.1
Q ss_pred cEEEEEeCCe------EEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcc
Q psy2751 2 EFATVIRQGE------KLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETK 75 (102)
Q Consensus 2 ~~~~v~r~g~------~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~ 75 (102)
++++|+|+|+ ++.+++++|+|||+|.+++|++|||||+++++++ .+|||+|||||.|+.|.++
T Consensus 18 ~~a~v~r~g~~~~~~~~~~v~~~~l~~GDiv~v~~G~~iPaDg~vi~g~~-~vdeS~LTGEs~pv~k~~g---------- 86 (124)
T 2kij_A 18 TEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHS-MVDESLITGEAMPVAKKPG---------- 86 (124)
T ss_dssp SEEEEEECSSSTTCCEEEEEETTTCCTTCEEECCTTCBCSSCEEECSCCC-EEECTTTTCCSSCEECCTT----------
T ss_pred CEEEEEECCCCCceeEEEEEeHHHCCCCCEEEECCCCEEEeeEEEEEccE-EEEeccccCCCccEEeCCC----------
Confidence 4688999764 6889999999999999999999999999999996 9999999999999999998
Q ss_pred cEEEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751 76 NLGFFSTNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 76 ~~v~~Gt~v~~g~~~~~V~~tG~~t~ 101 (102)
+.+|+||.+.+|.+.++|+++|.+|+
T Consensus 87 ~~v~aGt~~~~G~~~~~v~~~g~~T~ 112 (124)
T 2kij_A 87 STVIAGSINQNGSLLICATHVGADTT 112 (124)
T ss_dssp EEECTTCEEESSCCEEEECSCTTTCH
T ss_pred CEEEcCCEEeeeEEEEEEEEecccCH
Confidence 99999999999999999999999985
No 3
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=99.95 E-value=4.4e-28 Score=194.32 Aligned_cols=100 Identities=59% Similarity=0.841 Sum_probs=94.8
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
.+++|+|+|+++.|++++|+|||+|.+++||+|||||+|+++++|.||||+|||||.|+.|.+++...++++..|++|+|
T Consensus 172 ~~a~V~Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~ll~g~~~~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~v~~G 251 (1028)
T 2zxe_A 172 QQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFS 251 (1028)
T ss_dssp SEEEEEETTEEEEEEGGGCCTTCEEEEETTCBCCSEEEEEEEEEEEEECHHHHSCCSCEECCSSCCCSSTTTCSSEECTT
T ss_pred CeeEEEECCEEEEEEHHHCCcCCEEEECCCCEeeceEEEEeeCcEEEEcCccCCCCcceecccCCCCCCcccccceEEeC
Confidence 46899999999999999999999999999999999999999987899999999999999999987666788899999999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|.+.++|++||.+|.
T Consensus 252 T~v~~G~~~~~V~~tG~~T~ 271 (1028)
T 2zxe_A 252 TNCVEGTARGVVVYTGDRTV 271 (1028)
T ss_dssp CEEEEEEEEEEEEECGGGSH
T ss_pred ceEEcceEEEEEEEeccccH
Confidence 99999999999999999984
No 4
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=99.95 E-value=4.8e-28 Score=194.13 Aligned_cols=100 Identities=52% Similarity=0.806 Sum_probs=94.8
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
.+++|+|+|+++.+++++|+|||+|.+++||+||||++|++++++.||||+|||||.|+.|.++.....++...|++|+|
T Consensus 177 ~~a~ViRdG~~~~I~~~eLv~GDiV~l~~Gd~VPAD~~ll~~~~l~VdES~LTGES~pv~K~~~~~~~~~~~~~n~~f~G 256 (1034)
T 3ixz_A 177 QQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFS 256 (1034)
T ss_pred CeeEEEECCEEEEEEHHHCCCCcEEEEcCCceecCCeEEEEeCCceEEecccCCCCCCeeccCCCccccccccccceecc
Confidence 46899999999999999999999999999999999999999988899999999999999999887667788889999999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|++.++|++||.+|.
T Consensus 257 T~v~~G~~~~vVv~tG~~T~ 276 (1034)
T 3ixz_A 257 TMCLEGTAQGLVVNTGDRTI 276 (1034)
T ss_pred eeEEeecceEEEEeehhhhH
Confidence 99999999999999999985
No 5
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=99.93 E-value=1.3e-26 Score=184.15 Aligned_cols=89 Identities=35% Similarity=0.470 Sum_probs=86.0
Q ss_pred EEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCc-eEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 3 FATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRG-FKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 3 ~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~-~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
+++|+|+|+++.+++++|+|||+|.+++||+|||||+|+++++ +.||||+|||||.|+.|.++ |.+|+|
T Consensus 179 ~a~V~RdG~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~ll~g~~~l~VDES~LTGES~PV~K~~g----------d~v~sG 248 (920)
T 1mhs_A 179 KAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKG----------DQVFAS 248 (920)
T ss_dssp SCEEECSSSEEECCTTTSCTTSEEEECTTCBCSSEEEEEEESSCCEEBCTTTSSCCCCEECCSS----------CEECSC
T ss_pred EEEEEECCEEEEEEHHHcCCCCEEEeCCCCccccceEEEecCceeeeeccccCCCCcceEecCC----------CeeecC
Confidence 5789999999999999999999999999999999999999985 89999999999999999998 899999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|.+.++|++||.+|+
T Consensus 249 T~v~~G~~~~~V~~tG~~T~ 268 (920)
T 1mhs_A 249 SAVKRGEAFVVITATGDNTF 268 (920)
T ss_dssp BCCSCCCEEEEEEECSTTCS
T ss_pred ceEecceEEEEEEEeCCcCH
Confidence 99999999999999999996
No 6
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=99.93 E-value=6.8e-26 Score=174.79 Aligned_cols=89 Identities=28% Similarity=0.393 Sum_probs=85.7
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
++++|+|+|+++.+++++|+|||+|.+++||+|||||++++|+. .+|||+|||||.|+.|.++ +.+|+|
T Consensus 133 ~~a~v~r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~~-~VdeS~LTGES~Pv~K~~g----------~~v~~G 201 (645)
T 3j08_A 133 KTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPVLKSKG----------DEVFGA 201 (645)
T ss_dssp SEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECCE-EEECHHHHCCSSCEEECTT----------CEECTT
T ss_pred CEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeEEEEEECcE-EEEcccccCCCCceecCCC----------CEeecc
Confidence 46889999999999999999999999999999999999999994 9999999999999999998 999999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|.+.++|+++|.+|.
T Consensus 202 t~~~~g~~~~~v~~~G~~T~ 221 (645)
T 3j08_A 202 TINNTGVLKIRATRVGGETL 221 (645)
T ss_dssp CEECSSCEEEEEEECGGGSH
T ss_pred EEEecCcEEEEEEEcCCccH
Confidence 99999999999999999984
No 7
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=99.92 E-value=1.7e-25 Score=178.85 Aligned_cols=100 Identities=34% Similarity=0.464 Sum_probs=88.3
Q ss_pred cEEEEEeCCe--EEEEEccCCCCCCEEEEcCCCEeCCceEEEee--CceEEEccccCCCCccEEecccCCC---CCCCCc
Q psy2751 2 EFATVIRQGE--KLTVRAEDIVLGDVVDVKFGDRIPADIRIIEC--RGFKVDNSSLTGESEPQSRGVDFTN---DNPLET 74 (102)
Q Consensus 2 ~~~~v~r~g~--~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~--~~~~vd~s~ltGEs~pv~k~~~~~~---~~~~~~ 74 (102)
++++|+|+|+ ++.+++++|+|||+|.+++||+|||||+|+++ ..|.||||+|||||.|+.|.++... ....+.
T Consensus 126 ~~a~V~R~g~~~~~~I~~~~lv~GDiV~l~~Gd~IPaD~~ll~~~s~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~ 205 (995)
T 3ar4_A 126 EMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDK 205 (995)
T ss_dssp SEEEEEBTTCSSCEEEEGGGCCTTCEEEEETTCBCCSEEEEEEECSSCEEEECHHHHCCCSCEEECCSCCCCTTCCGGGC
T ss_pred CeEEEEeCCCceEEEEEHHHCCCCCEEEECCCCcccccEEEEEEeeceEEEEcccccCCCcceeccccccCCcccCcccc
Confidence 4688999887 69999999999999999999999999999754 4489999999999999999987421 234567
Q ss_pred ccEEEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751 75 KNLGFFSTNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 75 ~~~v~~Gt~v~~g~~~~~V~~tG~~t~ 101 (102)
.|.+|+||.+.+|.+.++|++||++|.
T Consensus 206 ~~~v~~GT~v~~G~~~~~V~~tG~~T~ 232 (995)
T 3ar4_A 206 KNMLFSGTNIAAGKALGIVATTGVSTE 232 (995)
T ss_dssp TTEECTTCEEEECEEEEEEEECGGGSH
T ss_pred cceEecCCEEEcceEEEEEEEcCcchH
Confidence 899999999999999999999999985
No 8
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=99.92 E-value=1.6e-25 Score=174.41 Aligned_cols=89 Identities=28% Similarity=0.393 Sum_probs=85.6
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS 81 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G 81 (102)
++++|+|+|+++.+++++|+|||+|.+++||+|||||++++|+. .+|||+|||||.|+.|.++ +.+|+|
T Consensus 211 ~~a~v~r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~~-~VdeS~LTGES~pv~K~~g----------~~v~~G 279 (723)
T 3j09_A 211 KTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPVLKSKG----------DEVFGA 279 (723)
T ss_dssp SEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECCE-EEECHHHHCCSSCEEECTT----------CEECTT
T ss_pred CeeEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeEEEEEECCe-EEecccccCCCcceeecCC----------Ceeccc
Confidence 46889999999999999999999999999999999999999995 9999999999999999998 999999
Q ss_pred CEEeeeeEEEEEEEeCCCcc
Q psy2751 82 TNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 82 t~v~~g~~~~~V~~tG~~t~ 101 (102)
|.+.+|.+.++|+++|.+|.
T Consensus 280 t~~~~g~~~~~v~~~g~~T~ 299 (723)
T 3j09_A 280 TINNTGVLKIRATRVGGETL 299 (723)
T ss_dssp CEECSSCEEEEEEECGGGSH
T ss_pred eEEecCcEEEEEEEecCccH
Confidence 99999999999999999984
No 9
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=99.91 E-value=7.5e-25 Score=171.07 Aligned_cols=89 Identities=26% Similarity=0.362 Sum_probs=84.4
Q ss_pred cEEEEEe-CCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEe
Q psy2751 2 EFATVIR-QGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFF 80 (102)
Q Consensus 2 ~~~~v~r-~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~ 80 (102)
++++++| +|+++.+++++|+|||+|.+++||+|||||++++|+. .||||+|||||.|+.|.++ +.+|+
T Consensus 225 ~~a~vv~~dg~~~~v~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~~-~VDES~LTGES~Pv~K~~g----------d~v~~ 293 (736)
T 3rfu_A 225 ESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRS-FVDESMVTGEPIPVAKEAS----------AKVIG 293 (736)
T ss_dssp CEEEEEETTEEEEEEETTTCCTTCEECCCSSEECCSCEEECSSCE-EEECSSSTTCSSCEEECTT----------CEECT
T ss_pred CEEEEEecCCEEEEEEHhhCCCCCEEEECCCCcccccEEEEECce-EeeecccCCccccEEeccC----------CcCCC
Confidence 3567777 8999999999999999999999999999999999995 9999999999999999999 89999
Q ss_pred eCEEeeeeEEEEEEEeCCCcc
Q psy2751 81 STNAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 81 Gt~v~~g~~~~~V~~tG~~t~ 101 (102)
||.+.+|.+.++|+++|.+|+
T Consensus 294 Gt~~~~G~~~~~v~~~G~~T~ 314 (736)
T 3rfu_A 294 ATINQTGSFVMKALHVGSDTM 314 (736)
T ss_dssp TCEEESCCCCEEECCCSTTSH
T ss_pred ceEeccceEEEEEEEechhhH
Confidence 999999999999999999984
No 10
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=99.91 E-value=3.1e-27 Score=187.27 Aligned_cols=89 Identities=34% Similarity=0.474 Sum_probs=85.7
Q ss_pred EEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEeeC
Q psy2751 3 FATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFST 82 (102)
Q Consensus 3 ~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~Gt 82 (102)
+++|+|+|+++.+++++|+|||+|.+++||+|||||+|++|++|.||||+|||||.|+.|.++ |.+|+||
T Consensus 131 ~a~V~RdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~ll~g~~l~VdES~LTGES~Pv~K~~g----------~~v~~GT 200 (885)
T 3b8c_A 131 KTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPG----------QEVFSGS 200 (885)
T ss_dssp CCCCCCSSCSCCCCTTTTCTTSBCCCCSSCCCSSCCCCCCSSCBCCCCCSTTCCSSCCCBSSC----------CCCCSCC
T ss_pred eEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeceEEEEcCcccccccccCCCCcceEecCC----------CccccCe
Confidence 567899999999999999999999999999999999999998778999999999999999998 8999999
Q ss_pred EEeeeeEEEEEEEeCCCcc
Q psy2751 83 NAVEGNAFSSFVLLLANNF 101 (102)
Q Consensus 83 ~v~~g~~~~~V~~tG~~t~ 101 (102)
.+.+|.+.++|++||.+|+
T Consensus 201 ~v~~G~~~~~V~~tG~~T~ 219 (885)
T 3b8c_A 201 TCKQGEIEAVVIATGVHTF 219 (885)
T ss_dssp CCCSCCCCCBCCSCTTTTT
T ss_pred EEeeeEEEEEEEEcCcccH
Confidence 9999999999999999996
No 11
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=94.31 E-value=0.06 Score=35.22 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=27.9
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeC
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIP 35 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vP 35 (102)
++.++.++|+..++++++|.+||.|.+..+..++
T Consensus 103 Hp~~v~~~g~~~w~~A~eLk~GD~v~~~~~~~~~ 136 (186)
T 2jmz_A 103 HPVYISKTGEVLEINAEMVKVGDYIYIPKNNTIN 136 (186)
T ss_dssp CEEEEEETTEEEEEEGGGCCTTSEEEEECSSSEE
T ss_pred CEEEEeCCCeEEEEEhhcCCCCCEEEecccCCcc
Confidence 3567888899999999999999999997654444
No 12
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=93.43 E-value=0.15 Score=33.22 Aligned_cols=34 Identities=24% Similarity=0.156 Sum_probs=28.2
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeC
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIP 35 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vP 35 (102)
++.++.++|+..++.+++|.+||.|.+..++..|
T Consensus 93 H~~~v~~~g~~~~~~A~eLk~GD~v~v~~~~~~~ 126 (185)
T 2lcj_A 93 HPVLVYENGRFIEKRAFEVKEGDKVLVSELELVE 126 (185)
T ss_dssp SEEEEEETTEEEEEEGGGCCTTCEEEECCCCCSC
T ss_pred CEEEEecCCeEEEEEHHHCCCCCEEEEccccccc
Confidence 4567788899999999999999999998766443
No 13
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=85.95 E-value=1.7 Score=27.18 Aligned_cols=29 Identities=21% Similarity=0.033 Sum_probs=23.0
Q ss_pred EEEEEeC--CeEEEEEccCCCCCCEEEEcCC
Q psy2751 3 FATVIRQ--GEKLTVRAEDIVLGDVVDVKFG 31 (102)
Q Consensus 3 ~~~v~r~--g~~~~i~~~~l~~GDii~l~~g 31 (102)
.+++... ++..++.+++|++||.|.+..|
T Consensus 73 ~i~v~~~~~~~~~~v~A~~l~~GD~v~~~~~ 103 (145)
T 1at0_A 73 LVSVWQPESQKLTFVFADRIEEKNQVLVRDV 103 (145)
T ss_dssp EEEEEETTTTEEEEEEGGGCCTTCEEEEECT
T ss_pred EEEEecCCCCcEEEEEHHHCcCCCEEEEecC
Confidence 4455554 4578899999999999999876
No 14
>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A*
Probab=81.58 E-value=1.7 Score=27.69 Aligned_cols=28 Identities=29% Similarity=0.195 Sum_probs=21.8
Q ss_pred EEEEEeCCeEEEEEccCCCCCCEEEEcCC
Q psy2751 3 FATVIRQGEKLTVRAEDIVLGDVVDVKFG 31 (102)
Q Consensus 3 ~~~v~r~g~~~~i~~~~l~~GDii~l~~g 31 (102)
+.++.++++ .++.+++|.+||.|.+..|
T Consensus 98 p~~~~~~~~-~w~~a~~L~~Gd~l~~~~g 125 (168)
T 4e2u_A 98 PVLLFRDGL-QWVPAAEVKPGDVVVGVRN 125 (168)
T ss_dssp EEEEESSSE-EEEEGGGCCTTCEEEEEET
T ss_pred cEEEEcCCC-EEEEHHHCCCCCEEEeccC
Confidence 445555554 7789999999999999876
No 15
>2cw8_A Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococcus kodakarensis} PDB: 2cw7_A
Probab=78.78 E-value=3.2 Score=31.33 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=25.0
Q ss_pred cEEEEEeCCeEEEEEccCCCCCCEEEEcC
Q psy2751 2 EFATVIRQGEKLTVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~ 30 (102)
+++.+.++|+..++++.+|.+||.|.+..
T Consensus 96 H~~l~~~~g~~~~~~a~elk~GD~v~~~~ 124 (537)
T 2cw8_A 96 HSLFSVRNGELVEVTGDELKPGDLVAVPR 124 (537)
T ss_dssp CEEEEEETTEEEEEETTTCCTTCEEEEES
T ss_pred ceEEEEECCEEEEEEhhcCCCCCEEEEee
Confidence 45677889999999999999999999843
No 16
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=71.75 E-value=4.6 Score=27.35 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=22.3
Q ss_pred cEEEEEe-CCeEEEEEc-------cCCCCCCEEEEcCC
Q psy2751 2 EFATVIR-QGEKLTVRA-------EDIVLGDVVDVKFG 31 (102)
Q Consensus 2 ~~~~v~r-~g~~~~i~~-------~~l~~GDii~l~~g 31 (102)
++++|++ ||+....+. .++.|||.|++...
T Consensus 166 ~~v~VI~~nG~v~~~~~a~Wn~~~~~l~PG~~I~Vp~~ 203 (236)
T 3p42_A 166 NNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFS 203 (236)
T ss_dssp SEEEEECTTSCEEEEECSSTTCCCEECCTTCEEEECBC
T ss_pred ccEEEEeCCCCEEeccccccccCCCCCCCCCEEEEeCC
Confidence 4677776 688877763 37999999998544
No 17
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=71.43 E-value=1.6 Score=27.12 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=16.8
Q ss_pred EEEEccCCCCCCEEEEcCCC
Q psy2751 13 LTVRAEDIVLGDVVDVKFGD 32 (102)
Q Consensus 13 ~~i~~~~l~~GDii~l~~g~ 32 (102)
..++.++++|||+|....+.
T Consensus 61 ~~V~~~~l~pGDLvFf~~~~ 80 (135)
T 2k1g_A 61 KSVSRSNLRTGDLVLFRAGS 80 (135)
T ss_dssp EEECGGGCCTTEEEEEEETT
T ss_pred cEecHHHccCCcEEEECCCC
Confidence 56789999999999997654
No 18
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2
Probab=64.30 E-value=12 Score=24.28 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=16.8
Q ss_pred eEEEEEccCCCCCCEEEEcC
Q psy2751 11 EKLTVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 11 ~~~~i~~~~l~~GDii~l~~ 30 (102)
++.++.+.+|.+||.|.+..
T Consensus 89 ~~~w~~a~eLk~GD~v~~~~ 108 (199)
T 1am2_A 89 TLLWKLIDEIKPGDYAVIQR 108 (199)
T ss_dssp EEEEEEGGGCCTTCEEEEEG
T ss_pred ceeEEEhhHCCCCCEEEECC
Confidence 34678999999999999854
No 19
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=63.94 E-value=17 Score=20.27 Aligned_cols=30 Identities=40% Similarity=0.241 Sum_probs=22.0
Q ss_pred EEEEeCCeEEEEEc---cCCCCCCEEEEcCCCE
Q psy2751 4 ATVIRQGEKLTVRA---EDIVLGDVVDVKFGDR 33 (102)
Q Consensus 4 ~~v~r~g~~~~i~~---~~l~~GDii~l~~g~~ 33 (102)
++|-..|..+.++. .++.+||.+++..|--
T Consensus 17 A~vd~~Gv~r~V~l~Lv~~~~vGD~VLVH~GfA 49 (75)
T 2z1c_A 17 AVVDFGGVKREVRLDLMPDTKPGDWVIVHTGFA 49 (75)
T ss_dssp EEEEETTEEEEEECTTSTTCCTTCEEEEETTEE
T ss_pred EEEEcCCEEEEEEEEEeCCCCCCCEEEEecchh
Confidence 45556777777764 5677999999998843
No 20
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=60.37 E-value=4.1 Score=31.60 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=21.2
Q ss_pred EEccCCCCCCEEEE-cCCCEeC-CceEEE
Q psy2751 15 VRAEDIVLGDVVDV-KFGDRIP-ADIRII 41 (102)
Q Consensus 15 i~~~~l~~GDii~l-~~g~~vP-aD~~ll 41 (102)
|.-.+|.+||.|.| ++||.|| +.+++.
T Consensus 374 i~~~di~iGD~V~V~rAGdVIP~V~~vv~ 402 (615)
T 3sgi_A 374 IKRKGVLIGDTVVIRKAGDVIPEVLGPVV 402 (615)
T ss_dssp TTTTCCCBTCEEEEECCSSSSCCCCEECT
T ss_pred HHHcCCCCCCEEEEEEcCCCccceeeecc
Confidence 44578999999999 6899999 455554
No 21
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=59.84 E-value=4.3 Score=24.95 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=16.5
Q ss_pred EEEEccCCCCCCEEEEcCCC
Q psy2751 13 LTVRAEDIVLGDVVDVKFGD 32 (102)
Q Consensus 13 ~~i~~~~l~~GDii~l~~g~ 32 (102)
..++.++++|||+|....+.
T Consensus 61 ~~v~~~~l~pGDLvff~~~~ 80 (136)
T 2jyx_A 61 KSVSRSNLRTGDLVLFRAGS 80 (136)
T ss_dssp EECCTTTCCTTEEEEEECSS
T ss_pred eEcchHhCCCCCEEEECCCC
Confidence 45678899999999998764
No 22
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=58.12 E-value=7.8 Score=27.78 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=22.4
Q ss_pred cEEEEEeCCeEEEEEcc------------CCCCCCEEEEcCC
Q psy2751 2 EFATVIRQGEKLTVRAE------------DIVLGDVVDVKFG 31 (102)
Q Consensus 2 ~~~~v~r~g~~~~i~~~------------~l~~GDii~l~~g 31 (102)
+.+.+.|+|+...+... .|++||+|.+.+.
T Consensus 191 ~~V~l~R~g~~~~idl~~ll~~g~~~~~~~L~~GD~I~Vp~~ 232 (359)
T 2j58_A 191 RNVVLTHNGKDTKISLYALMQKGDLTQNHLLYHGDILFIPSN 232 (359)
T ss_dssp TCEEEEETTEEEEECHHHHHTTCBGGGCCBCCTTCEEEECBG
T ss_pred ceEEEEECCeEEEEEHHHHhhcCCcccceeccCCCeEEEeec
Confidence 46788999988776643 3788898888653
No 23
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.27 E-value=6.7 Score=20.67 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.0
Q ss_pred cCCCCCCEEEEcCCCEeCCceEEEee
Q psy2751 18 EDIVLGDVVDVKFGDRIPADIRIIEC 43 (102)
Q Consensus 18 ~~l~~GDii~l~~g~~vPaD~~ll~~ 43 (102)
..+.+||.|.+..|..--..|++.+-
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~ev 31 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSV 31 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCC
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEE
Confidence 46899999999999998888888663
No 24
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=55.10 E-value=9.1 Score=23.18 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=16.4
Q ss_pred EEEccCCCCCCEEEEcCCC
Q psy2751 14 TVRAEDIVLGDVVDVKFGD 32 (102)
Q Consensus 14 ~i~~~~l~~GDii~l~~g~ 32 (102)
++++.+|.+||.|.+..|.
T Consensus 81 w~~a~~L~~Gd~v~~~~~~ 99 (139)
T 2in0_A 81 WRAAGELRKGDRVAVRDVE 99 (139)
T ss_dssp EEEGGGCCTTCEEEEECTT
T ss_pred cEEHHHCCCCCEEEeCCCc
Confidence 5689999999999998764
No 25
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=54.67 E-value=6.2 Score=24.38 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=15.5
Q ss_pred EEEEccCCCCCCEEEEcCC
Q psy2751 13 LTVRAEDIVLGDVVDVKFG 31 (102)
Q Consensus 13 ~~i~~~~l~~GDii~l~~g 31 (102)
..++.++++|||+|....+
T Consensus 83 ~~v~~~~~~pGDlvff~~~ 101 (142)
T 3gt2_A 83 QKILPQQARKGDLIFYGPE 101 (142)
T ss_dssp EEECGGGCCTTCEEEESGG
T ss_pred ceechhhCCCCCEEEeCCC
Confidence 4677899999999998643
No 26
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=54.04 E-value=16 Score=19.84 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=14.2
Q ss_pred EEEeCCeEEEEEc--cCCCCCCEEEE
Q psy2751 5 TVIRQGEKLTVRA--EDIVLGDVVDV 28 (102)
Q Consensus 5 ~v~r~g~~~~i~~--~~l~~GDii~l 28 (102)
.+.|+++.. +|. ..|.+||++.+
T Consensus 45 ~I~R~~~~~-~p~~~~~l~~GD~l~v 69 (86)
T 3jxo_A 45 AIVRGGVLV-VPRGDTEILSGDKLYV 69 (86)
T ss_dssp EEEETTEEE-CCCTTCBCCTTCEEEE
T ss_pred EEEECCEEE-CCCCCCEECCCCEEEE
Confidence 355777654 232 45777887776
No 27
>1dq3_A Endonuclease; PI-PFUI, intein-encoded, hydrolase; 2.10A {Pyrococcus furiosus} SCOP: b.86.1.2 d.50.3.1 d.95.2.2 d.95.2.2
Probab=52.49 E-value=15 Score=26.85 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=22.4
Q ss_pred EEEEEe-CCeEEEEEccCCCCCCEEEEc
Q psy2751 3 FATVIR-QGEKLTVRAEDIVLGDVVDVK 29 (102)
Q Consensus 3 ~~~v~r-~g~~~~i~~~~l~~GDii~l~ 29 (102)
+..+.+ +|++.++++.+|.+||.|.+.
T Consensus 100 ~~~~~~~~g~~~~~~a~~l~~gd~i~~~ 127 (454)
T 1dq3_A 100 PFFVLTPDFKIVEKRADELKEGDILIGG 127 (454)
T ss_dssp EEEEECTTSCEEEEETTTCCTTCEECBC
T ss_pred eEEEEeCCCcEEEEEhhhCCCCCEEEec
Confidence 455666 688899999999999999974
No 28
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*
Probab=52.44 E-value=8.3 Score=25.81 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=16.0
Q ss_pred EEEEccCCCCCCEEEEcCC
Q psy2751 13 LTVRAEDIVLGDVVDVKFG 31 (102)
Q Consensus 13 ~~i~~~~l~~GDii~l~~g 31 (102)
..++.+++++||+|....|
T Consensus 152 ~~V~~~~lqpGDLvFf~~g 170 (214)
T 3ne0_A 152 RKIPSSQMRRGDVIFYGPN 170 (214)
T ss_dssp EEEEGGGCCTTCEEEESGG
T ss_pred ceechhhCCCCCEEEecCC
Confidence 4678899999999998654
No 29
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=51.08 E-value=30 Score=19.89 Aligned_cols=30 Identities=27% Similarity=0.067 Sum_probs=20.5
Q ss_pred EEEEeCCeEEEEEccC---------CCCCCEEEEcCCCE
Q psy2751 4 ATVIRQGEKLTVRAED---------IVLGDVVDVKFGDR 33 (102)
Q Consensus 4 ~~v~r~g~~~~i~~~~---------l~~GDii~l~~g~~ 33 (102)
++|-..|..+.++..- +.+||.+++..|--
T Consensus 17 A~Vd~~Gv~r~V~l~Lv~~~~~~~~~~vGD~VLVH~GfA 55 (90)
T 2ot2_A 17 AKVDVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHVGFA 55 (90)
T ss_dssp EEEECSSSEEEEECTTTCSBCTTSCBCTTCEEEEETTEE
T ss_pred EEEEcCCeEEEEEEeeeeccCCCCCCCCCCEEEEecChh
Confidence 4454566666666543 47899999998843
No 30
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=50.95 E-value=4.8 Score=31.50 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=17.6
Q ss_pred EccCCCCCCEEEE-cCCCEeC
Q psy2751 16 RAEDIVLGDVVDV-KFGDRIP 35 (102)
Q Consensus 16 ~~~~l~~GDii~l-~~g~~vP 35 (102)
.-.+|.+||.|.+ ++||.||
T Consensus 365 ~~~di~iGD~V~V~rAGdvIP 385 (671)
T 2owo_A 365 ERLGLRIGDKVVIRRAGDVIP 385 (671)
T ss_dssp HHHTCCBTCEEEEEEETTTEE
T ss_pred HHcCCCCCCEEEEEECCCccc
Confidence 3568999999999 7999999
No 31
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=50.72 E-value=3.7 Score=31.61 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=19.5
Q ss_pred ccCCCCCCEEEE-cCCCEeC-CceEE
Q psy2751 17 AEDIVLGDVVDV-KFGDRIP-ADIRI 40 (102)
Q Consensus 17 ~~~l~~GDii~l-~~g~~vP-aD~~l 40 (102)
-.+|.+||.|.| ++||.|| .+.++
T Consensus 366 ~~di~iGD~V~V~rAGdVIP~I~~Vv 391 (586)
T 4glx_A 366 RLGLRIGDKVVIRRAGDVIPQVVNVV 391 (586)
T ss_dssp HHTCEETCEEEEEEETTTEEEEEEEC
T ss_pred hcCCCcCCEEEEEECCCcCccceeee
Confidence 468999999999 6999999 44444
No 32
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Probab=50.61 E-value=7.6 Score=25.97 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=15.9
Q ss_pred EEEEccCCCCCCEEEEcCC
Q psy2751 13 LTVRAEDIVLGDVVDVKFG 31 (102)
Q Consensus 13 ~~i~~~~l~~GDii~l~~g 31 (102)
..++.+++++||+|....+
T Consensus 152 ~~V~~~~lqpGDLVff~~g 170 (214)
T 3pbi_A 152 RHVPPAEAKRGDLIFYGPG 170 (214)
T ss_dssp EEECGGGCCTTCEEEESGG
T ss_pred eeechhhCCCCCEEEecCC
Confidence 5678899999999998654
No 33
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=48.88 E-value=5.6 Score=31.10 Aligned_cols=20 Identities=50% Similarity=0.597 Sum_probs=17.5
Q ss_pred EccCCCCCCEEEE-cCCCEeC
Q psy2751 16 RAEDIVLGDVVDV-KFGDRIP 35 (102)
Q Consensus 16 ~~~~l~~GDii~l-~~g~~vP 35 (102)
.-.+|.+||.|.| ++||.||
T Consensus 363 ~~~di~iGD~V~V~rAGdvIP 383 (667)
T 1dgs_A 363 EELDIRIGDWVLVHKAGGVIP 383 (667)
T ss_dssp HHTTCBSSCEEEEEEETTTEE
T ss_pred HHcCCCCCCEEEEEECCCcch
Confidence 3578899999999 7999999
No 34
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=47.13 E-value=42 Score=19.70 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=12.5
Q ss_pred ccCCCCCCEEEEcCCCEe
Q psy2751 17 AEDIVLGDVVDVKFGDRI 34 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~~v 34 (102)
..++.+||+|....=..+
T Consensus 79 ~~dik~GD~Ie~ye~~ev 96 (99)
T 1d1n_A 79 FNDIKEGDVIEAYVMQEV 96 (99)
T ss_dssp CSSCSSCSEEEEECCSCC
T ss_pred cCCCCCCCEEEEEEEEEE
Confidence 568888888887654433
No 35
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=46.22 E-value=11 Score=24.02 Aligned_cols=16 Identities=13% Similarity=-0.078 Sum_probs=12.6
Q ss_pred ccCCCCCCEEEEcCCC
Q psy2751 17 AEDIVLGDVVDVKFGD 32 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~ 32 (102)
..+|++||+|..+.+.
T Consensus 2 ~~~l~~GDlvf~~~~~ 17 (186)
T 2if6_A 2 LWQPQTGDIIFQISRS 17 (186)
T ss_dssp -CCCCTTCEEEECCCS
T ss_pred cccCCCCCEEEEEcCC
Confidence 4689999999997653
No 36
>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A
Probab=43.00 E-value=17 Score=24.55 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=16.5
Q ss_pred EEEEccCCCCCCEEEEcCCC
Q psy2751 13 LTVRAEDIVLGDVVDVKFGD 32 (102)
Q Consensus 13 ~~i~~~~l~~GDii~l~~g~ 32 (102)
..++.++++|||+|....+.
T Consensus 154 ~~v~~~~l~pGDLvff~~~~ 173 (235)
T 2hbw_A 154 QAITIDELAPGDLVFFGTPV 173 (235)
T ss_dssp EEECGGGCCTTCEEEEECSS
T ss_pred ccccHhhCCCCCEEEECCCC
Confidence 46788999999999997653
No 37
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=42.88 E-value=39 Score=23.16 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=16.6
Q ss_pred EEEEEeCCeEEEEEccCCCCCCEEEEcCCCEe
Q psy2751 3 FATVIRQGEKLTVRAEDIVLGDVVDVKFGDRI 34 (102)
Q Consensus 3 ~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~v 34 (102)
.+.|.-||....+++ |..|.|.||+.+
T Consensus 156 ~v~V~~DG~~~~~~a-----G~~i~L~PGESi 182 (246)
T 3kmh_A 156 DITVVIDGCRQKHTA-----GSQLRLSPGESI 182 (246)
T ss_dssp CEEEEETTEEEEECT-----TCEEEECTTCEE
T ss_pred CeEEecCCeEEEeCC-----CCEEEECCCCeE
Confidence 355666666665554 666666666654
No 38
>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...
Probab=42.16 E-value=37 Score=19.95 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=14.2
Q ss_pred CCCCCEEEEc-----CCCEeCCceEEEe
Q psy2751 20 IVLGDVVDVK-----FGDRIPADIRIIE 42 (102)
Q Consensus 20 l~~GDii~l~-----~g~~vPaD~~ll~ 42 (102)
+.+||.+.++ +|+.+-.| +|+-
T Consensus 14 V~~Gd~i~vekl~~~~G~~v~~~-VLlv 40 (101)
T 3v2d_V 14 VEPGLKLRVEKLDAEPGATVELP-VLLL 40 (101)
T ss_dssp ECTTCEEEESCCSCCTTCEEEEC-EEEE
T ss_pred EeCCCEEEECCcCCCCCCEEEEE-EEEE
Confidence 4568887773 67777777 5543
No 39
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=39.66 E-value=35 Score=19.35 Aligned_cols=12 Identities=17% Similarity=0.537 Sum_probs=10.1
Q ss_pred cCCCCCCEEEEc
Q psy2751 18 EDIVLGDVVDVK 29 (102)
Q Consensus 18 ~~l~~GDii~l~ 29 (102)
++.++||+|.+.
T Consensus 36 r~~~vGD~l~l~ 47 (83)
T 3iuw_A 36 RNFQVGDILILE 47 (83)
T ss_dssp SCCCTTCEEEEE
T ss_pred cCCCCCCEEEEE
Confidence 569999999984
No 40
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=39.56 E-value=8.3 Score=24.78 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=24.4
Q ss_pred EEEEEccCCCCCCEEEEcCCCEeC-CceEEEee
Q psy2751 12 KLTVRAEDIVLGDVVDVKFGDRIP-ADIRIIEC 43 (102)
Q Consensus 12 ~~~i~~~~l~~GDii~l~~g~~vP-aD~~ll~~ 43 (102)
...++|++|.+|++|++.-+---| --|...+.
T Consensus 85 Rt~l~w~~L~vGqvVMvNYN~d~PkerGfWYDa 117 (161)
T 3db3_A 85 RTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDA 117 (161)
T ss_dssp CCBCCGGGCCTTCEEEEEECSSSTTSCCEEEEE
T ss_pred EEeccHHHCCcCcEEEEecCCCCccccceeEEE
Confidence 456889999999999998877777 55555443
No 41
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=38.39 E-value=58 Score=19.21 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=20.6
Q ss_pred EEEEEeCCeEEEEEcc----CCCCCCEEEEcCCC
Q psy2751 3 FATVIRQGEKLTVRAE----DIVLGDVVDVKFGD 32 (102)
Q Consensus 3 ~~~v~r~g~~~~i~~~----~l~~GDii~l~~g~ 32 (102)
.++|-..|..+.+... ++.+||.|++..|-
T Consensus 39 ~A~Vd~~Gv~reV~l~Lv~e~~~vGDyVLVHvGf 72 (103)
T 3d3r_A 39 SVTVDTLGVRRDVSSHLMTEPLAIGDYVLIHIGF 72 (103)
T ss_dssp EEEEEETTEEEEEECTTBSSCCCTTCEEEEEEEE
T ss_pred EEEEEcCCEEEEEEEEeecCCCCCCCEEEEeech
Confidence 3555566777777654 45689999998774
No 42
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=36.10 E-value=26 Score=20.74 Aligned_cols=23 Identities=17% Similarity=0.139 Sum_probs=17.7
Q ss_pred EeCCeEEEEE-ccCCCCCCEEEEc
Q psy2751 7 IRQGEKLTVR-AEDIVLGDVVDVK 29 (102)
Q Consensus 7 ~r~g~~~~i~-~~~l~~GDii~l~ 29 (102)
.++|+|..-. --.|.+||+|..-
T Consensus 55 ~~~GrW~~~d~~~~lk~GD~i~Yw 78 (106)
T 3aqy_A 55 PKEGRWTFRDRNVKLKLGDKIYFW 78 (106)
T ss_dssp CBTTEEEEEECSCCCCTTCEEEEE
T ss_pred ecCCEEEEECCceEeCCCCEEEEE
Confidence 4688998655 5689999999873
No 43
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=35.60 E-value=16 Score=20.44 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=7.8
Q ss_pred cCCCCCCEEEEc
Q psy2751 18 EDIVLGDVVDVK 29 (102)
Q Consensus 18 ~~l~~GDii~l~ 29 (102)
-+|.+||+|.+.
T Consensus 34 l~L~~GdVi~Ld 45 (84)
T 1o9y_A 34 RRLDAGTILEVT 45 (84)
T ss_dssp HTCCTTCEEEEC
T ss_pred hcCCCCCEEEeC
Confidence 456677777775
No 44
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=35.28 E-value=20 Score=21.30 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=17.2
Q ss_pred EeCCeEEEE-EccCCCCCCEEEE
Q psy2751 7 IRQGEKLTV-RAEDIVLGDVVDV 28 (102)
Q Consensus 7 ~r~g~~~~i-~~~~l~~GDii~l 28 (102)
.++|+|..- .-..|++||+|..
T Consensus 54 ~~~GrW~~~d~~~~lk~GD~I~Y 76 (107)
T 3ie4_A 54 AKNGRWTFRDRITALKPGDTLYY 76 (107)
T ss_dssp CBTTEEEEEESSCCCCTTCEEEE
T ss_pred ecCCEEEEECCCceeCCCCEEEE
Confidence 368888876 5678999998875
No 45
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=34.87 E-value=20 Score=21.36 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=12.8
Q ss_pred EccCCCCCCEEEEcCC
Q psy2751 16 RAEDIVLGDVVDVKFG 31 (102)
Q Consensus 16 ~~~~l~~GDii~l~~g 31 (102)
+.++.+|||+|.+..+
T Consensus 4 ~~~ep~pGDlI~~~r~ 19 (125)
T 2lkt_A 4 PHQEPKPGDLIEIFRL 19 (125)
T ss_dssp SSCCCCTTCEEEEECS
T ss_pred CCCCCCCCCEEEEeCC
Confidence 4578899999998654
No 46
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A
Probab=33.94 E-value=31 Score=22.35 Aligned_cols=25 Identities=24% Similarity=0.092 Sum_probs=17.1
Q ss_pred EEEeCCeEEEEE--ccCCCCCCEEEEc
Q psy2751 5 TVIRQGEKLTVR--AEDIVLGDVVDVK 29 (102)
Q Consensus 5 ~v~r~g~~~~i~--~~~l~~GDii~l~ 29 (102)
-+.|+|++...| -..|.+||++.+-
T Consensus 154 aI~R~g~~i~~P~~dt~L~~GD~Liv~ 180 (205)
T 1vct_A 154 AVRRGKRWIFGPNENFKIRAGDVLIGR 180 (205)
T ss_dssp EEEETTEEEESCCTTCBCCTTCEEEEE
T ss_pred EEEECCEEEeCCCCCCEECCCCEEEEE
Confidence 456888776433 4668888888773
No 47
>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2
Probab=33.70 E-value=27 Score=21.48 Aligned_cols=16 Identities=13% Similarity=0.275 Sum_probs=14.1
Q ss_pred EEEccCCCCCCEEEEc
Q psy2751 14 TVRAEDIVLGDVVDVK 29 (102)
Q Consensus 14 ~i~~~~l~~GDii~l~ 29 (102)
++.+.+|.+||.|.+.
T Consensus 83 w~~a~~L~~GD~v~~~ 98 (158)
T 1mi8_A 83 WKRLDELSLKEHIALP 98 (158)
T ss_dssp EEEGGGCCTTCEEEEE
T ss_pred CEEhhhCCCCCEEEec
Confidence 4689999999999986
No 48
>4hpe_A Putative cell WALL hydrolase TN916-like,CTN1-ORF1; two domains protein, SLT/lysozyme-like muramidase, NLPC/P60 endopeptidase; 2.38A {Clostridium difficile}
Probab=33.28 E-value=23 Score=24.72 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=15.3
Q ss_pred EEEEccCCCCCCEEEEcC
Q psy2751 13 LTVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 13 ~~i~~~~l~~GDii~l~~ 30 (102)
..++.++++|||+|....
T Consensus 242 ~~v~~~~l~pGDLvff~~ 259 (308)
T 4hpe_A 242 QHLPLSQAKAGDLVFFHS 259 (308)
T ss_dssp EEECGGGCCTTCEEEEEC
T ss_pred eeechhhCCCCCEEEEcC
Confidence 457889999999999974
No 49
>4fdy_A Similar to lipoprotein, NLP/P60 family; SLT/lysozyme-like muramidase, NLPC/P60 LD endopeptidase, STR genomics; 2.23A {Staphylococcus aureus subsp}
Probab=32.60 E-value=27 Score=24.60 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=15.2
Q ss_pred EEEEccCCCCCCEEEEcC
Q psy2751 13 LTVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 13 ~~i~~~~l~~GDii~l~~ 30 (102)
..++.++++|||+|....
T Consensus 246 ~~V~~~~lqpGDLvff~~ 263 (313)
T 4fdy_A 246 QEISMEEAQAGDLIFFHS 263 (313)
T ss_dssp EEECTTTCCTTCEEEESS
T ss_pred ceechhhCCCCCEEEEec
Confidence 457889999999999964
No 50
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response, innate immunity, secreted, sugar binding protein; NMR {Plodia interpunctella}
Probab=32.50 E-value=42 Score=20.63 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=18.3
Q ss_pred EeCCeEEEEE-ccCCCCCCEEEEc
Q psy2751 7 IRQGEKLTVR-AEDIVLGDVVDVK 29 (102)
Q Consensus 7 ~r~g~~~~i~-~~~l~~GDii~l~ 29 (102)
.++|+|..-. -..|++||.|...
T Consensus 64 ~~~GrW~~~d~~~~Lk~GD~IyYw 87 (130)
T 2kha_A 64 PKEGRWTFRDRNAKLKLGDKIYFW 87 (130)
T ss_dssp CSSSEEEEEETTCCCCTTCEEEEE
T ss_pred ecCCEEEEECCceeeCCCCEEEEE
Confidence 3688998666 5699999999874
No 51
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=32.30 E-value=20 Score=15.96 Aligned_cols=13 Identities=31% Similarity=0.207 Sum_probs=9.5
Q ss_pred EEEEEeCCeEEEE
Q psy2751 3 FATVIRQGEKLTV 15 (102)
Q Consensus 3 ~~~v~r~g~~~~i 15 (102)
+.+|+++|.|...
T Consensus 11 ~~Yvr~dg~WV~l 23 (27)
T 2ww6_A 11 QAYVRKFGEWVLL 23 (27)
T ss_dssp CEEEEETTEEEEG
T ss_pred ceeEEEcCeEEEc
Confidence 4578889988754
No 52
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=31.55 E-value=34 Score=19.45 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=12.9
Q ss_pred ccCCCCCCEEEEcCCCE
Q psy2751 17 AEDIVLGDVVDVKFGDR 33 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~~ 33 (102)
.++|.+||.+.+.++++
T Consensus 3 m~~i~vG~Rv~v~~~~~ 19 (84)
T 4b6m_A 3 METIHVGDRCLCRPGDR 19 (84)
T ss_dssp --CCCTTCEEEETTTTE
T ss_pred ccCcccCCEEEEcCCCe
Confidence 46899999999987764
No 53
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=30.98 E-value=43 Score=24.04 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=22.1
Q ss_pred CcEEEEE--eCCeEEEEEccCCCCCCEEEEcC
Q psy2751 1 MEFATVI--RQGEKLTVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 1 ~~~~~v~--r~g~~~~i~~~~l~~GDii~l~~ 30 (102)
|+-+.|+ .+++-.-.+..+|+.||.|.+-.
T Consensus 50 MDcviVv~~~~~~~~~~~~r~lk~GD~VVvG~ 81 (345)
T 3c2q_A 50 MDAVIVVYPEEKRAETKVIRKVKKGDFVLIGH 81 (345)
T ss_dssp SSCEEEEEGGGTEEEEECGGGCCTTCEEEESS
T ss_pred cceEEEEecCCCeEEEEEccccccCCEEEECC
Confidence 5556666 45566678889999999999743
No 54
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=30.64 E-value=37 Score=19.41 Aligned_cols=14 Identities=36% Similarity=0.297 Sum_probs=8.8
Q ss_pred CCCCCCEEEEcCCC
Q psy2751 19 DIVLGDVVDVKFGD 32 (102)
Q Consensus 19 ~l~~GDii~l~~g~ 32 (102)
.|.+||.+.+.+|.
T Consensus 71 ~l~~GD~i~ip~g~ 84 (101)
T 1o5u_A 71 VIEKGDLVTFPKGL 84 (101)
T ss_dssp EEETTCEEEECTTC
T ss_pred EECCCCEEEECCCC
Confidence 46666666666654
No 55
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=29.59 E-value=40 Score=17.16 Aligned_cols=42 Identities=24% Similarity=0.145 Sum_probs=28.3
Q ss_pred CCCCCCEEEEcCCCEeCCceEEEeeCc----eEEEccccCCCCccEE
Q psy2751 19 DIVLGDVVDVKFGDRIPADIRIIECRG----FKVDNSSLTGESEPQS 61 (102)
Q Consensus 19 ~l~~GDii~l~~g~~vPaD~~ll~~~~----~~vd~s~ltGEs~pv~ 61 (102)
.+.+||.+.+..|..--..|.+.+-.. +.+.-++ -|...|+.
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~-~Gr~t~v~ 49 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTI-FGRETPVE 49 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEES-SSSEEEEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEe-CCCEEEEE
Confidence 568999999999998888888876421 4444333 44445544
No 56
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=29.27 E-value=71 Score=18.20 Aligned_cols=14 Identities=21% Similarity=0.052 Sum_probs=8.4
Q ss_pred CCCCCCEEEEcCCC
Q psy2751 19 DIVLGDVVDVKFGD 32 (102)
Q Consensus 19 ~l~~GDii~l~~g~ 32 (102)
.|.+||.+.+.+|.
T Consensus 76 ~l~~Gd~i~ipa~~ 89 (112)
T 2opk_A 76 VMRPGDWLHVPAHC 89 (112)
T ss_dssp EECTTEEEEECTTC
T ss_pred EECCCCEEEECCCC
Confidence 46666666665554
No 57
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=29.21 E-value=24 Score=22.60 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=11.8
Q ss_pred CCCCCCEEEEcCCCE
Q psy2751 19 DIVLGDVVDVKFGDR 33 (102)
Q Consensus 19 ~l~~GDii~l~~g~~ 33 (102)
.|.|||++.|.+|-.
T Consensus 204 ~l~pGD~LyiP~gW~ 218 (235)
T 4gjz_A 204 ILSPGEILFIPVKYW 218 (235)
T ss_dssp EECTTCEEEECTTCE
T ss_pred EECCCCEEEeCCCCc
Confidence 478888888888765
No 58
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=29.08 E-value=16 Score=21.10 Aligned_cols=11 Identities=9% Similarity=0.749 Sum_probs=5.8
Q ss_pred CCCCCCEEEEc
Q psy2751 19 DIVLGDVVDVK 29 (102)
Q Consensus 19 ~l~~GDii~l~ 29 (102)
+|.+||+|.+.
T Consensus 39 ~L~~GdVI~Ld 49 (96)
T 1o6a_A 39 EMIHGSIIELD 49 (96)
T ss_dssp HCCTTCEEEEE
T ss_pred CCCCCCEEEeC
Confidence 45555555553
No 59
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=28.27 E-value=1e+02 Score=19.49 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=24.3
Q ss_pred EEEEEeCCeEEEE------EccCCCCCCEEEEcCCCE
Q psy2751 3 FATVIRQGEKLTV------RAEDIVLGDVVDVKFGDR 33 (102)
Q Consensus 3 ~~~v~r~g~~~~i------~~~~l~~GDii~l~~g~~ 33 (102)
++.|+-.|+..++ ..++|.+|..+++..+..
T Consensus 21 tadV~t~GRkMrv~vsP~vd~~~L~~Gq~V~LNEal~ 57 (153)
T 2wfw_A 21 TVDVFTSGRKMRLTCSPNIDTDTLALGQTVRLNEALT 57 (153)
T ss_dssp CEEEEETTEEEEECBCTTCCGGGCCTTCEEEECTTCC
T ss_pred eEEEEECCcEEEEEeCCCCCHHHCCCCCEEEECCceE
Confidence 4677888877664 478999999999987664
No 60
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=26.21 E-value=41 Score=19.61 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=11.2
Q ss_pred cCCCCCCEEEEcC
Q psy2751 18 EDIVLGDVVDVKF 30 (102)
Q Consensus 18 ~~l~~GDii~l~~ 30 (102)
..+..||+|++.+
T Consensus 61 ekV~~GDVI~Id~ 73 (95)
T 2cqa_A 61 DKVQAGDVITIDK 73 (95)
T ss_dssp TTCCTTSEEEEET
T ss_pred cCceeCCEEEEEc
Confidence 4899999999965
No 61
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=25.72 E-value=45 Score=20.24 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=18.3
Q ss_pred EEeCCeEEEEEccCCCCCCEEEEcCCC
Q psy2751 6 VIRQGEKLTVRAEDIVLGDVVDVKFGD 32 (102)
Q Consensus 6 v~r~g~~~~i~~~~l~~GDii~l~~g~ 32 (102)
|.-||+.. -+...|.+||.|.+..++
T Consensus 36 V~VNG~~v-k~s~~V~~GD~I~I~~~~ 61 (133)
T 1dm9_A 36 VHYNGQRS-KPSKIVELNATLTLRQGN 61 (133)
T ss_dssp EEETTEEC-CTTCBCCTTCEEEEEETT
T ss_pred EEECCEEc-CCCCEeCCCCEEEEEeCC
Confidence 34467654 467789999999996443
No 62
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=24.94 E-value=34 Score=18.46 Aligned_cols=15 Identities=13% Similarity=-0.011 Sum_probs=11.2
Q ss_pred cCCCCCCEEEEcCCC
Q psy2751 18 EDIVLGDVVDVKFGD 32 (102)
Q Consensus 18 ~~l~~GDii~l~~g~ 32 (102)
..+.+||.+.+.+|.
T Consensus 69 ~~l~~Gd~~~ip~~~ 83 (105)
T 1v70_A 69 ALLAPGMAAFAPAGA 83 (105)
T ss_dssp EEECTTCEEEECTTS
T ss_pred EEeCCCCEEEECCCC
Confidence 457788888887775
No 63
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=24.86 E-value=17 Score=21.05 Aligned_cols=11 Identities=36% Similarity=0.422 Sum_probs=9.5
Q ss_pred CCCCCEEEEcC
Q psy2751 20 IVLGDVVDVKF 30 (102)
Q Consensus 20 l~~GDii~l~~ 30 (102)
|.+||+|+++.
T Consensus 84 l~~GdvI~V~~ 94 (106)
T 3d0f_A 84 IRPGALIRVKK 94 (106)
T ss_dssp CCTTEEEEEEE
T ss_pred CCCCCEEEEEE
Confidence 88899999973
No 64
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.78 E-value=31 Score=22.81 Aligned_cols=27 Identities=7% Similarity=0.110 Sum_probs=21.2
Q ss_pred EEeCCeEEEEEccCCCCCCEEEEcCCC
Q psy2751 6 VIRQGEKLTVRAEDIVLGDVVDVKFGD 32 (102)
Q Consensus 6 v~r~g~~~~i~~~~l~~GDii~l~~g~ 32 (102)
|.=||+....++..+.+||.|.+....
T Consensus 116 V~VNG~~V~~pS~~V~~gD~I~V~~~~ 142 (201)
T 3bbn_D 116 ILVNGRIVDIPSYRCKPQDTIMARDEQ 142 (201)
T ss_dssp EEETTEECCCTTCBCCTTEEEEECSST
T ss_pred EEeCCEEEeecceecCCCCEEEEcccc
Confidence 344777778899999999999997443
No 65
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=24.71 E-value=19 Score=20.84 Aligned_cols=10 Identities=20% Similarity=0.587 Sum_probs=5.2
Q ss_pred CCCCCCEEEE
Q psy2751 19 DIVLGDVVDV 28 (102)
Q Consensus 19 ~l~~GDii~l 28 (102)
+|.+||+|.+
T Consensus 39 ~L~~GdVI~L 48 (96)
T 3uep_A 39 SLEPGSLIDL 48 (96)
T ss_dssp HCCTTCEEEE
T ss_pred cCCCCCEEEe
Confidence 3455555555
No 66
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=24.64 E-value=43 Score=20.71 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=12.2
Q ss_pred ccCCCCCCEEEEcCC
Q psy2751 17 AEDIVLGDVVDVKFG 31 (102)
Q Consensus 17 ~~~l~~GDii~l~~g 31 (102)
..+++|||+|.+..+
T Consensus 5 ~~~~~pGDlv~~~~~ 19 (137)
T 4dpz_X 5 RPRPRLGDLIEISRF 19 (137)
T ss_dssp CCCCCTTCEEEEECS
T ss_pred cccCCCCCEEEEeCC
Confidence 468999999988654
No 67
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=24.34 E-value=1.3e+02 Score=18.36 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=33.2
Q ss_pred ccCCCCCCEEEEcCCCEeCCceEEEeeCc----eEEEccccCCCCccEEecc
Q psy2751 17 AEDIVLGDVVDVKFGDRIPADIRIIECRG----FKVDNSSLTGESEPQSRGV 64 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~~vPaD~~ll~~~~----~~vd~s~ltGEs~pv~k~~ 64 (102)
...+.+||.|.+..|..--..|.+.+-.. +.+.-+.+ |...|+.-..
T Consensus 89 ~~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~-gr~tpvel~~ 139 (152)
T 3p8b_B 89 VSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDA-IVPIPVTIKG 139 (152)
T ss_dssp TTTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSC-SSCCEEEEEG
T ss_pred cccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEec-ceeEEEEECH
Confidence 35688999999999988777788876421 45555544 6677776543
No 68
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=24.32 E-value=49 Score=23.99 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=23.3
Q ss_pred ccCCCCCCEEEEcCCCEeC--CceEEEeeC
Q psy2751 17 AEDIVLGDVVDVKFGDRIP--ADIRIIECR 44 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~~vP--aD~~ll~~~ 44 (102)
...|.+|+-+++-.|..+| ||.++..-.
T Consensus 90 ~~~l~~g~a~~i~TGa~~P~GadaVV~~E~ 119 (402)
T 1uz5_A 90 KFKLGKGEAAYISTGAMLPGNADAVIQFED 119 (402)
T ss_dssp CCBCCTTEEEEECTTCBCCBTCCEEEEGGG
T ss_pred CCccCCCcEEEEccCCCCCCCCCEEEEEEE
Confidence 4568899999999999998 888876544
No 69
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=24.31 E-value=51 Score=23.84 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=23.4
Q ss_pred ccCCCCCCEEEEcCCCEeC--CceEEEeeC
Q psy2751 17 AEDIVLGDVVDVKFGDRIP--ADIRIIECR 44 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~~vP--aD~~ll~~~ 44 (102)
...|.+|+-+++-.|..+| ||.++..-.
T Consensus 92 ~~~l~~g~a~~I~TGa~~P~GadaVV~~E~ 121 (396)
T 1wu2_A 92 KEEVTTGKAIKVLTGTRIPKGANAVIMQEM 121 (396)
T ss_dssp SSCCCTTEEEEECTTCBCCTTCCEEEEGGG
T ss_pred CCccCCCcEEEEccCCCCCCCCCEEEEEEE
Confidence 4568899999999999998 888876654
No 70
>3zvk_E VAPB2, antitoxin of toxin-antitoxin system VAPB; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=24.16 E-value=98 Score=17.03 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=21.9
Q ss_pred CcEEEEEeCCeE--EEEEccCCCCCCEEEEc
Q psy2751 1 MEFATVIRQGEK--LTVRAEDIVLGDVVDVK 29 (102)
Q Consensus 1 ~~~~~v~r~g~~--~~i~~~~l~~GDii~l~ 29 (102)
|.+++|.+.|+- .++|..-.-.||-|.|.
T Consensus 1 M~~~kvfk~GnSqAVRLPk~~~~~g~eV~I~ 31 (78)
T 3zvk_E 1 MNKAKIFMNGQSQAVRLPKEFRFSVKEVSVI 31 (78)
T ss_dssp -CEEEEEEETTEEEEEECGGGCCSSSEEEEE
T ss_pred CceEEEEEECCeeeEECCHHHcCCCCEEEEE
Confidence 678899988854 57787777788888884
No 71
>2imz_A Endonuclease PI-MTUI; N-terminal cysteine sulfinic acid C-terminal aminosuccinimide, hydrolase; 1.70A {Mycobacterium tuberculosis}
Probab=23.83 E-value=38 Score=20.91 Aligned_cols=16 Identities=25% Similarity=0.152 Sum_probs=13.9
Q ss_pred EEEccCCCCCCEEEEc
Q psy2751 14 TVRAEDIVLGDVVDVK 29 (102)
Q Consensus 14 ~i~~~~l~~GDii~l~ 29 (102)
+.++.+|.+||.|.+.
T Consensus 81 w~~a~~L~~Gd~v~~~ 96 (168)
T 2imz_A 81 WRAAGELRKGDRVAQP 96 (168)
T ss_dssp EEEGGGCCTTCEEECC
T ss_pred CEEHHHCCCCCEEEEe
Confidence 4689999999999875
No 72
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=23.80 E-value=20 Score=21.38 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=10.7
Q ss_pred ccCCCCCCEEEEc
Q psy2751 17 AEDIVLGDVVDVK 29 (102)
Q Consensus 17 ~~~l~~GDii~l~ 29 (102)
.+.+.+||.|.+.
T Consensus 31 ~~~ikvGD~I~f~ 43 (109)
T 2z0t_A 31 RRQIKPGDIIIFE 43 (109)
T ss_dssp GGGCCTTCEEEEG
T ss_pred hhcCCCCCEEEEC
Confidence 4578999999993
No 73
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=23.53 E-value=45 Score=18.49 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=15.0
Q ss_pred EeCCeEEEEEccCCCCCCEEEEc
Q psy2751 7 IRQGEKLTVRAEDIVLGDVVDVK 29 (102)
Q Consensus 7 ~r~g~~~~i~~~~l~~GDii~l~ 29 (102)
.-||+.. -+...|.+||.|.+.
T Consensus 29 ~VNg~~~-~~~~~v~~gd~I~v~ 50 (92)
T 2k6p_A 29 WLNGSCA-KASKEVKAGDTISLH 50 (92)
T ss_dssp EETTEEC-CTTCBCCTTCEEEEC
T ss_pred EECCEEc-CCCCCcCCCCEEEEE
Confidence 3466654 456678889988885
No 74
>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}
Probab=23.32 E-value=39 Score=22.25 Aligned_cols=15 Identities=13% Similarity=0.065 Sum_probs=12.4
Q ss_pred ccCCCCCCEEEEcCC
Q psy2751 17 AEDIVLGDVVDVKFG 31 (102)
Q Consensus 17 ~~~l~~GDii~l~~g 31 (102)
.++|++||+|..+..
T Consensus 37 ~~~l~~GDlif~~~~ 51 (214)
T 3kw0_A 37 INVLKTGDIFLCSGN 51 (214)
T ss_dssp TTTCCTTCEEEEEEC
T ss_pred HhhCCCCCEEEEeCC
Confidence 478999999999754
No 75
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=23.10 E-value=42 Score=20.86 Aligned_cols=16 Identities=13% Similarity=0.164 Sum_probs=11.6
Q ss_pred EccCCCCCCEEEEcCC
Q psy2751 16 RAEDIVLGDVVDVKFG 31 (102)
Q Consensus 16 ~~~~l~~GDii~l~~g 31 (102)
...+++|||+|.+..+
T Consensus 4 ~~~~~~pGDlv~~~~~ 19 (140)
T 4dot_A 4 PIPEPKPGDLIEIFRP 19 (140)
T ss_dssp --CCCCTTCEEEEEET
T ss_pred cccCCCCCCEEEEeCC
Confidence 4578999999988643
No 76
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=22.93 E-value=42 Score=19.69 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=10.9
Q ss_pred cCCCCCCEEEEcCCCE
Q psy2751 18 EDIVLGDVVDVKFGDR 33 (102)
Q Consensus 18 ~~l~~GDii~l~~g~~ 33 (102)
..|.+||.+.+.+|..
T Consensus 79 ~~l~~GD~v~ip~g~~ 94 (119)
T 3lwc_A 79 VTAGPGEIVYMPKGET 94 (119)
T ss_dssp EEECTTCEEEECTTCE
T ss_pred EEECCCCEEEECCCCE
Confidence 3567777777777754
No 77
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=22.86 E-value=75 Score=18.61 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=10.4
Q ss_pred CCCCEEEEc-----CCCEeCCceEEE
Q psy2751 21 VLGDVVDVK-----FGDRIPADIRII 41 (102)
Q Consensus 21 ~~GDii~l~-----~g~~vPaD~~ll 41 (102)
.+||.+.++ +|+.+-.|-+|+
T Consensus 15 ~~Gd~i~vekl~~~~G~~v~~~~VLl 40 (103)
T 3r8s_R 15 SEGQTVRLEKLDIATGETVEFAEVLM 40 (103)
T ss_dssp ETTCEEEESCCCSCTTCEEEECCEEE
T ss_pred eCCCEEEECCcCCCCCCEEEEeEEEE
Confidence 356666663 344444443333
No 78
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=22.64 E-value=45 Score=20.92 Aligned_cols=25 Identities=12% Similarity=0.381 Sum_probs=19.4
Q ss_pred EEeCCeEEEEEccCCCCCCEEEEcC
Q psy2751 6 VIRQGEKLTVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 6 v~r~g~~~~i~~~~l~~GDii~l~~ 30 (102)
|.-||+....+...+.+||.|.+..
T Consensus 78 V~VNG~~v~~ps~~V~~gD~I~V~~ 102 (159)
T 1c05_A 78 ILVDGSRVNIPSYRVKPGQTIAVRE 102 (159)
T ss_dssp EEETTEECCCSSCBCCTTCEEEECG
T ss_pred EEECCEEeCcCCcEeCCCCEEEEeC
Confidence 4457777667888999999999964
No 79
>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}
Probab=22.54 E-value=47 Score=23.01 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.6
Q ss_pred EEEEccCCCCCCEEEEc
Q psy2751 13 LTVRAEDIVLGDVVDVK 29 (102)
Q Consensus 13 ~~i~~~~l~~GDii~l~ 29 (102)
..++.++++|||+|...
T Consensus 243 ~~v~~~~~~pGDlvff~ 259 (311)
T 3h41_A 243 VAVDKEHLQKGDLIFFA 259 (311)
T ss_dssp EEECGGGCCTTCEEEEE
T ss_pred EEEcHHHCCCCCEEEEe
Confidence 45678999999999996
No 80
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=22.29 E-value=41 Score=22.17 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=19.5
Q ss_pred EEeCCeEEEEEccCCCCCCEEEEcC
Q psy2751 6 VIRQGEKLTVRAEDIVLGDVVDVKF 30 (102)
Q Consensus 6 v~r~g~~~~i~~~~l~~GDii~l~~ 30 (102)
|.=||+....+...+.+||.|.+..
T Consensus 126 V~VNG~~v~~ps~~V~~gD~I~V~~ 150 (209)
T 2vqe_D 126 ITVNGRRVDLPSYRVRPGDEIAVAE 150 (209)
T ss_dssp EEETTEECCCTTCBCCTTCEEEECG
T ss_pred EEECCEEeCcCCcCcCCCCEEEEcC
Confidence 4457777667888999999999964
No 81
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=21.99 E-value=47 Score=19.75 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=8.2
Q ss_pred CCCCCCEEEEcCCC
Q psy2751 19 DIVLGDVVDVKFGD 32 (102)
Q Consensus 19 ~l~~GDii~l~~g~ 32 (102)
.|.+||.+.+.+|.
T Consensus 90 ~l~~GD~~~ip~g~ 103 (123)
T 3bcw_A 90 AVKAGDAFIMPEGY 103 (123)
T ss_dssp EEETTCEEEECTTC
T ss_pred EECCCCEEEECCCC
Confidence 45566666665554
No 82
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=21.95 E-value=64 Score=19.96 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=16.4
Q ss_pred EeCCeEEE-EEccCCCCCCEEEE
Q psy2751 7 IRQGEKLT-VRAEDIVLGDVVDV 28 (102)
Q Consensus 7 ~r~g~~~~-i~~~~l~~GDii~l 28 (102)
++||+..+ +..+.+.+||.|..
T Consensus 36 y~dg~k~yIlAp~gl~~Gd~I~~ 58 (137)
T 1rl2_A 36 YADGEKRYIIAPKNLKVGMEIMS 58 (137)
T ss_dssp ETTSCEEEEECCTTCCTTCEECB
T ss_pred eCCCCEEEEEecccCccceEEEE
Confidence 46776554 55788999999975
No 83
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=21.39 E-value=46 Score=19.38 Aligned_cols=21 Identities=24% Similarity=0.166 Sum_probs=14.7
Q ss_pred cCCCCCCEEEEcC---CCEeCCce
Q psy2751 18 EDIVLGDVVDVKF---GDRIPADI 38 (102)
Q Consensus 18 ~~l~~GDii~l~~---g~~vPaD~ 38 (102)
-++.+||.+++.. |..+-.|+
T Consensus 57 ~~VkvGD~Vlf~k~y~Gtevk~dg 80 (97)
T 1pcq_O 57 LDVKVGDIVIFNDGYGVKSEKIDN 80 (97)
T ss_dssp CSCCTTCEEEECCCSSCEEEEETT
T ss_pred cccCCCCEEEECCccCCeEEEECC
Confidence 3688899888876 55555554
No 84
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=21.33 E-value=41 Score=19.91 Aligned_cols=17 Identities=18% Similarity=0.053 Sum_probs=14.3
Q ss_pred ccCCCCCCEEEEcCCCE
Q psy2751 17 AEDIVLGDVVDVKFGDR 33 (102)
Q Consensus 17 ~~~l~~GDii~l~~g~~ 33 (102)
...+.+||++.+.+|..
T Consensus 57 ~~~l~~Gd~~~i~p~~~ 73 (164)
T 2arc_A 57 EFVCRPGDILLFPPGEI 73 (164)
T ss_dssp EEEECTTCEEEECTTCC
T ss_pred EEEecCCeEEEEcCCCC
Confidence 45788999999999974
No 85
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=21.11 E-value=94 Score=19.87 Aligned_cols=24 Identities=21% Similarity=0.100 Sum_probs=14.3
Q ss_pred EEEeCCeEEEEE--ccCCCCCCEEEE
Q psy2751 5 TVIRQGEKLTVR--AEDIVLGDVVDV 28 (102)
Q Consensus 5 ~v~r~g~~~~i~--~~~l~~GDii~l 28 (102)
-+.|+|++...| -..|.+||.+.+
T Consensus 189 ~i~R~~~~~~~p~~~~~l~~GD~l~v 214 (234)
T 2aef_A 189 GVGRGDELIIDPPRDYSFRAGDIILG 214 (234)
T ss_dssp EEEETTEEEESCCTTCBCCTTCEEEE
T ss_pred EEEECCeEEeCCCCCCEECCCCEEEE
Confidence 355777654312 345677887776
No 86
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=21.01 E-value=48 Score=18.62 Aligned_cols=16 Identities=31% Similarity=0.193 Sum_probs=11.9
Q ss_pred cCCCCCCEEEEcCCCE
Q psy2751 18 EDIVLGDVVDVKFGDR 33 (102)
Q Consensus 18 ~~l~~GDii~l~~g~~ 33 (102)
..|.+||.+.+.+|..
T Consensus 78 ~~l~~Gd~i~i~~~~~ 93 (114)
T 2ozj_A 78 IDLVPEDVLMVPAHKI 93 (114)
T ss_dssp EEECTTCEEEECTTCC
T ss_pred EEecCCCEEEECCCCc
Confidence 4578888888887753
No 87
>2b0a_A Hypothetical protein MJ0783; structural genomics, PSI, protein STRU initiative; 1.45A {Methanocaldococcus jannaschii} SCOP: c.8.8.1
Probab=20.98 E-value=42 Score=21.56 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=13.9
Q ss_pred EEccCCCCCCEEEEcCCC
Q psy2751 15 VRAEDIVLGDVVDVKFGD 32 (102)
Q Consensus 15 i~~~~l~~GDii~l~~g~ 32 (102)
|..+++.+||++.++.|.
T Consensus 76 It~~~i~~gd~vlirTg~ 93 (186)
T 2b0a_A 76 FPGNKLPACDILLIYTGF 93 (186)
T ss_dssp CSSCCCCSCSEEEEECSG
T ss_pred cCHHHCCCCcEEEEECCc
Confidence 444578899999999884
No 88
>2l1t_A Uncharacterized protein; putative C-DI-GMP binding, GSU3033, PILZ, structural genomic biology, protein structure initiative; NMR {Geobacter sulfurreducens}
Probab=20.79 E-value=30 Score=20.73 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=23.7
Q ss_pred CCCCCEEEEc-CCCEeCCceEEEeeCceEEEccccCC
Q psy2751 20 IVLGDVVDVK-FGDRIPADIRIIECRGFKVDNSSLTG 55 (102)
Q Consensus 20 l~~GDii~l~-~g~~vPaD~~ll~~~~~~vd~s~ltG 55 (102)
-.-+|.+.+. .+|..|+|..+-.|. .+|-+.-+|
T Consensus 39 ~~~~dli~lqLsrd~LP~~v~l~~G~--~l~v~~~~g 73 (109)
T 2l1t_A 39 SLKGSLAWLELFGAEQPPPNTLSEGA--EVSVSVWTG 73 (109)
T ss_dssp EEETTEEEECCSSSCCCCTTTCCTTC--EEEEEEEET
T ss_pred EecCCEEEEEeecccCCCceeEeccc--EEEEEEccC
Confidence 3458999996 889999998886665 344333333
No 89
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=20.63 E-value=45 Score=18.82 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=11.9
Q ss_pred CCCCCCEEEEcCCCE
Q psy2751 19 DIVLGDVVDVKFGDR 33 (102)
Q Consensus 19 ~l~~GDii~l~~g~~ 33 (102)
.|.+||.+.+.+|..
T Consensus 69 ~l~~Gd~i~ip~~~~ 83 (117)
T 2b8m_A 69 NYKEGNIVYVPFNVK 83 (117)
T ss_dssp EEETTCEEEECTTCE
T ss_pred EeCCCCEEEECCCCc
Confidence 667899998888864
No 90
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=20.21 E-value=35 Score=18.51 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=11.9
Q ss_pred cCCCCCCEEEEcCCCE
Q psy2751 18 EDIVLGDVVDVKFGDR 33 (102)
Q Consensus 18 ~~l~~GDii~l~~g~~ 33 (102)
..+.+||.+.+.+|..
T Consensus 70 ~~l~~Gd~~~ip~~~~ 85 (102)
T 3d82_A 70 ITLQAGEMYVIPKGVE 85 (102)
T ss_dssp EEEETTEEEEECTTCC
T ss_pred EEEcCCCEEEECCCCe
Confidence 4577888888888764
No 91
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=20.16 E-value=54 Score=19.58 Aligned_cols=14 Identities=29% Similarity=0.242 Sum_probs=11.9
Q ss_pred ccCCCCCCEEEEcC
Q psy2751 17 AEDIVLGDVVDVKF 30 (102)
Q Consensus 17 ~~~l~~GDii~l~~ 30 (102)
.+.+.+||.|.+..
T Consensus 32 ~~~i~vGD~I~f~~ 45 (113)
T 1xne_A 32 LKDIKRGDKIIFND 45 (113)
T ss_dssp TTTCCTTCEEEETT
T ss_pred hhccCCCCEEEEcc
Confidence 56789999999966
Done!