RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2751
(102 letters)
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 145 bits (369), Expect = 2e-42
Identities = 51/86 (59%), Positives = 71/86 (82%)
Query: 4 ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
ATVIR G+K + A+ +V+GD+V++K GDR+PADIRI++ +G KVDNSSLTGESEPQ+R
Sbjct: 179 ATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRS 238
Query: 64 VDFTNDNPLETKNLGFFSTNAVEGNA 89
+ T+++PLET+N+ FFST +EG A
Sbjct: 239 PECTHESPLETRNIAFFSTMCLEGTA 264
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 145 bits (367), Expect = 5e-42
Identities = 58/86 (67%), Positives = 70/86 (81%)
Query: 4 ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
A VIR GEK T+ AE +V GD+V+VK GDRIPAD+RII G KVDNSSLTGESEPQ+R
Sbjct: 174 ALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRS 233
Query: 64 VDFTNDNPLETKNLGFFSTNAVEGNA 89
+F+++NPLET+N+ FFSTN VEG A
Sbjct: 234 PEFSSENPLETRNIAFFSTNCVEGTA 259
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 86.5 bits (215), Expect = 1e-21
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 4 ATVIRQGEKLT--VRAEDIVLGDVVDVKFGDRIPADIRI--IECRGFKVDNSSLTGESEP 59
V R K ++A DIV GD+V+V GD++PADIRI I+ +VD S LTGES
Sbjct: 128 GKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVS 187
Query: 60 QSRGVDFTNDN--PL-ETKNLGFFSTNAVEGNA 89
+ + D + KN+ F TN G A
Sbjct: 188 VIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKA 220
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 85.8 bits (213), Expect = 3e-21
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 4 ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
V+R G+ A +V GD+V +K GD IPAD R++E KVD S+LTGES P ++
Sbjct: 132 TKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTK- 190
Query: 64 VDFTNDNPLETKNLGFFSTNAVEGNA 89
F + +G
Sbjct: 191 ---------HPGQEVFSGSTCKQGEI 207
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 80.8 bits (200), Expect = 1e-19
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 4 ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGF-KVDNSSLTGESEPQSR 62
A V+R G + A ++V GD++ V+ G IPAD RI+ F +VD S+LTGES +
Sbjct: 180 AVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDK 239
Query: 63 GVDFTNDNPLETKNLGFFSTNAVEGNAF 90
+ F S+ G AF
Sbjct: 240 ----------HKGDQVFASSAVKRGEAF 257
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 59.1 bits (144), Expect = 7e-12
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 4 ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEP 59
A VIR G+++ V E++ +GD+V V+ G++IP D ++E + VD S ++GE P
Sbjct: 213 AVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVP 267
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB,
actuator, transport protein; 1.65A {Archaeoglobus
fulgidus} PDB: 2voy_F
Length = 113
Score = 55.9 bits (136), Expect = 8e-12
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 4 ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEP 59
A VIR G+++ V E++ +GD+V V+ G++IP D ++E + VD S ++GE P
Sbjct: 14 AVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVP 68
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 57.5 bits (140), Expect = 2e-11
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 4 ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEP 59
A VIR G+++ V E++ +GD+V V+ G++IP D ++E + VD S ++GE P
Sbjct: 135 AVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVP 189
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 53.7 bits (130), Expect = 5e-10
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 6 VIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVD 65
+ G + V +++ +GD++ V+ G++IP D + E R F VD S +TGE P ++
Sbjct: 230 IKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEPIPVAKEAS 288
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease,
alternative splicing, ATP-binding, cell membrane,
cytoplasm, disease mutation; NMR {Homo sapiens}
Length = 124
Score = 49.4 bits (119), Expect = 3e-09
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 4 ATVIRQGEKLTVRAE------DIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGES 57
AT++ + +E + GD++ V G + P D R+IE VD S +TGE+
Sbjct: 20 ATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEA 78
Query: 58 EP 59
P
Sbjct: 79 MP 80
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening,
optimization, protein crystallization, structural
genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei
1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Length = 396
Score = 27.1 bits (61), Expect = 0.97
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 10/48 (20%)
Query: 11 EKLTVRAE---DIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTG 55
K+ +RA +IVL + +P + + +G + + L
Sbjct: 213 GKVGLRASITGEIVLDEA-------FVPEENILPHVKGLRGPFTCLNS 253
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: FDA; 1.70A
{Mycobacterium smegmatis}
Length = 403
Score = 26.8 bits (60), Expect = 1.3
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 10/48 (20%)
Query: 11 EKLTVRAE---DIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTG 55
K+++RA ++VL V R+P R+ L
Sbjct: 220 SKMSLRASVTSELVLDGV-------RLPDSARLPGATSLGAPLRCLNE 260
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 26.4 bits (59), Expect = 1.6
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 12 KLTVRAE---DIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTG 55
K+++RA ++VL +V R+P +R+ + G K S LT
Sbjct: 204 KMSLRASVTSELVLEEV-------RVPESLRLPKALGLKAPLSCLTQ 243
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase,
mycobacerium smegmatis, S genomics; HET: FDA; 1.45A
{Mycobacterium smegmatis}
Length = 399
Score = 26.4 bits (59), Expect = 1.6
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
Query: 11 EKLTVRAE---DIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTG 55
KL++RA ++VL +V R+PA ++ G S L
Sbjct: 215 RKLSLRASVTSELVLDNV-------RLPASAQLPLAEGLSAPLSCLNE 255
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 26.5 bits (59), Expect = 1.7
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 10/47 (21%)
Query: 12 KLTVRAE---DIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTG 55
K+ +R DI+L +V +P + R+ F+ + L
Sbjct: 247 KIGLRMVQNGDILLQNV-------FVPDEDRLPGVNSFQDTSKVLAV 286
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein
structure initiative, N SGX research center for
structural genomics, nysgxrc; 2.21A {Agrobacterium
tumefaciens} PDB: 3t81_A 3t8l_A
Length = 608
Score = 26.1 bits (57), Expect = 2.2
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 19 DIVL--GDVVDVKFGDRIPADIRIIECR 44
D+++ G +VDV G+ PADI I+
Sbjct: 36 DVLITGGTLVDVVTGELRPADIGIVGAL 63
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 25.9 bits (56), Expect = 2.3
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 27 DVK----FGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFST 82
D + F + + + G ++ + + G + D +++ +
Sbjct: 33 DFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLA-DLKDNSNDKAWRKVKLVI 91
Query: 83 NAVEG-NAFSSF 93
+ V+G NA +SF
Sbjct: 92 DEVDGRNAKTSF 103
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 26.0 bits (58), Expect = 2.3
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 10/47 (21%)
Query: 12 KLTVRAE---DIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTG 55
K ++RA I++ V +P + + L
Sbjct: 207 KFSLRASATGMIIMDGV-------EVPEENVLPGASSLGGPFGCLNN 246
>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex,
amidohydrolase, structural genomics, PSI, protein
structure initiative; HET: KCX ADE; 2.30A {Enterococcus
faecalis} SCOP: b.92.1.8 c.1.9.14
Length = 379
Score = 25.5 bits (55), Expect = 3.9
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 1 MEFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRI--PADIRIIECRGFKV 48
+++ +I+ G+ + +I + + I A I G V
Sbjct: 3 LDYDLLIKNGQTVNGMPVEIAIKEKKIAAVAATISGSAKETIHLEPGTYV 52
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein
structure initiati midwest center for structural
genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Length = 382
Score = 24.9 bits (55), Expect = 5.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 7 IRQGEKLTVRAEDIV 21
I+QG L A DIV
Sbjct: 284 IKQGATLITSASDIV 298
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1
c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D*
1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D*
2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D
2w6e_D ...
Length = 482
Score = 24.9 bits (55), Expect = 5.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 21 VLGDVVDVKFGDRIPA 36
V+G VVDV+F + +P
Sbjct: 20 VIGAVVDVQFDEGLPP 35
>3k69_A Putative transcription regulator; putative transcriptional
regulator, structural genomics, JOI for structural
genomics, JCSG; HET: MSE; 1.95A {Lactobacillus
plantarum}
Length = 162
Score = 24.4 bits (53), Expect = 8.1
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 10 GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSS 52
G +L + D+ LGD+ D+ I I
Sbjct: 67 GYQLDLALADMNLGDLYDLTIPPTISYARFITGPSKTDEQADQ 109
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis
MOEA protein; MOEA molybdopterin, MOCF biosynthesis;
2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1
c.57.1.2
Length = 402
Score = 24.4 bits (54), Expect = 9.2
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 1 MEFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRI-PADI 38
+ G + + DI G ++ VK G+R+
Sbjct: 127 ILIYKPAYPGLGVMKKGIDIEKGRLL-VKKGERLGFKQT 164
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.384
Gapped
Lambda K H
0.267 0.0645 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,506,853
Number of extensions: 79756
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 25
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)