RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2751
         (102 letters)



>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain
          A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 115

 Score = 57.0 bits (137), Expect = 1e-12
 Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 7/95 (7%)

Query: 2  EFATVIRQGEKLT--VRAEDIVLGDVVDVKFGDRIPADIRIIECR--GFKVDNSSLTGES 57
          E   V R   K    ++A DIV GD+V+V  GD++PADIRI+  +    +VD S LTGES
Sbjct: 1  EMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGES 60

Query: 58 EPQSRGVDFTND---NPLETKNLGFFSTNAVEGNA 89
              +  +   D      + KN+ F  TN   G A
Sbjct: 61 VSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKA 95


>d2jdid2 b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, domain 1
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 72

 Score = 24.2 bits (53), Expect = 1.5
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 21 VLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGE 56
          V+G VVDV+F + +P  +  +E +G     + L  E
Sbjct: 7  VIGAVVDVQFDEGLPPILNALEVQG---RETRLVLE 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.384 

Gapped
Lambda     K      H
   0.267   0.0724    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 352,685
Number of extensions: 14371
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 7
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (21.9 bits)