Query psy2752
Match_columns 99
No_of_seqs 117 out of 1081
Neff 6.6
Searched_HMMs 29240
Date Sat Aug 17 00:19:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rsn_A Chromo domain-containin 99.9 2E-22 7E-27 124.8 5.8 58 4-61 16-74 (75)
2 1ap0_A Modifier protein 1; chr 99.9 2.4E-22 8.1E-27 123.8 4.8 61 3-64 7-67 (73)
3 3fdt_A Chromobox protein homol 99.9 1.8E-22 6.1E-27 119.7 4.0 56 8-64 2-57 (59)
4 3lwe_A M-phase phosphoprotein 99.9 1.6E-22 5.5E-27 121.0 3.9 59 6-65 1-60 (62)
5 3g7l_A Chromo domain-containin 99.9 1.9E-22 6.4E-27 120.4 4.1 59 3-62 1-60 (61)
6 3i91_A Chromobox protein homol 99.9 4.7E-22 1.6E-26 115.9 5.2 53 7-60 1-53 (54)
7 2d9u_A Chromobox protein homol 99.8 1.5E-21 5.2E-26 120.4 6.7 63 3-66 4-66 (74)
8 3h91_A Chromobox protein homol 99.8 7.2E-22 2.5E-26 115.2 4.9 53 7-60 1-53 (54)
9 2rso_A Chromatin-associated pr 99.8 9.8E-22 3.4E-26 125.9 5.8 58 5-62 26-86 (92)
10 3mts_A Histone-lysine N-methyl 99.8 1.3E-21 4.3E-26 117.9 5.7 61 11-72 2-62 (64)
11 1q3l_A Heterochromatin protein 99.8 6.3E-22 2.1E-26 120.9 4.4 57 4-61 11-67 (69)
12 3f2u_A Chromobox protein homol 99.8 5.3E-22 1.8E-26 116.1 3.9 54 8-62 1-54 (55)
13 1pdq_A Polycomb protein; methy 99.8 1.5E-21 5.1E-26 120.1 4.6 57 4-61 15-71 (72)
14 2kvm_A Chromobox protein homol 99.8 3.6E-21 1.2E-25 118.7 6.4 64 3-67 7-70 (74)
15 2dnv_A Chromobox protein homol 99.8 8.4E-22 2.9E-26 118.5 3.4 59 2-61 3-61 (64)
16 1pfb_A Polycomb protein; chrom 99.8 2.2E-21 7.5E-26 113.4 4.4 53 7-60 1-53 (55)
17 2dnt_A Chromodomain protein, Y 99.8 1.5E-21 5.2E-26 121.5 2.8 61 3-63 7-68 (78)
18 2k1b_A Chromobox protein homol 99.8 1.5E-21 5.2E-26 120.4 2.6 58 3-61 15-72 (73)
19 4hae_A CDY-like 2, chromodomai 99.8 1.9E-22 6.4E-27 126.6 -2.4 59 4-62 18-77 (81)
20 1g6z_A CLR4 protein; transfera 99.8 1.1E-21 3.8E-26 119.8 0.4 59 3-62 2-63 (70)
21 2epb_A Chromodomain-helicase-D 99.7 5.2E-17 1.8E-21 98.7 3.9 55 6-61 8-67 (68)
22 2ee1_A Chromodomain helicase-D 99.6 1.1E-16 3.9E-21 96.2 2.0 54 6-59 8-63 (64)
23 1x3p_A Cpsrp43; chromo-2 domai 99.6 9.6E-18 3.3E-22 97.8 -4.3 47 11-61 2-50 (54)
24 2b2y_C CHD-1, chromodomain-hel 99.5 5.5E-16 1.9E-20 102.6 -4.3 59 6-65 33-102 (115)
25 2h1e_A Chromo domain protein 1 99.3 9.7E-14 3.3E-18 97.7 -0.0 53 7-59 118-176 (177)
26 2b2y_A CHD-1, chromodomain-hel 99.3 9.8E-13 3.4E-17 93.2 2.7 51 11-61 132-186 (187)
27 3mwy_W Chromo domain-containin 99.1 3.5E-12 1.2E-16 104.9 -0.6 58 5-63 33-112 (800)
28 2b2y_A CHD-1, chromodomain-hel 99.0 5.3E-12 1.8E-16 89.5 -3.4 58 6-64 33-101 (187)
29 3kup_A Chromobox protein homol 99.0 6.5E-11 2.2E-15 71.1 1.2 53 8-61 11-63 (65)
30 2h1e_A Chromo domain protein 1 99.0 1.2E-10 4.1E-15 81.8 2.3 53 11-64 14-88 (177)
31 2fmm_A Chromobox protein homol 98.9 5E-10 1.7E-14 68.7 2.5 51 8-61 14-66 (74)
32 3i3c_A Chromobox protein homol 98.8 2.3E-10 7.9E-15 70.5 -0.7 52 9-61 22-73 (75)
33 3p7j_A Heterochromatin protein 98.8 9.8E-10 3.4E-14 69.4 1.9 54 8-62 24-77 (87)
34 3q6s_A Chromobox protein homol 98.8 5.5E-10 1.9E-14 69.2 0.1 54 8-62 8-61 (78)
35 3mwy_W Chromo domain-containin 97.6 8.9E-06 3E-10 66.9 0.4 54 9-62 145-204 (800)
36 1e0b_A SWI6 protein; chromatin 97.3 9.9E-05 3.4E-09 44.3 2.1 48 11-61 12-61 (68)
37 2f5k_A MORF-related gene 15 is 95.7 0.023 7.9E-07 36.4 5.3 34 14-48 41-74 (102)
38 2lcc_A AT-rich interactive dom 95.4 0.017 5.7E-07 35.0 3.5 35 13-48 27-61 (76)
39 3ui2_A Signal recognition part 95.2 0.039 1.3E-06 38.3 5.6 48 11-62 188-235 (244)
40 2eko_A Histone acetyltransfera 94.2 0.043 1.5E-06 34.1 3.3 37 13-50 32-68 (87)
41 2ro0_A Histone acetyltransfera 94.0 0.059 2E-06 33.8 3.7 37 12-49 40-76 (92)
42 2rnz_A Histone acetyltransfera 94.0 0.075 2.6E-06 33.5 4.2 36 13-49 43-78 (94)
43 3m9p_A MALE-specific lethal 3 93.7 0.077 2.6E-06 34.4 4.0 40 8-48 38-81 (110)
44 2lrq_A Protein MRG15, NUA4 com 92.2 0.017 5.9E-07 35.7 0.0 34 14-48 31-64 (85)
45 2bud_A Males-absent on the fir 92.9 0.16 5.5E-06 31.9 4.3 36 13-48 33-70 (92)
46 3oa6_A MALE-specific lethal 3 92.2 0.23 8E-06 32.1 4.6 40 8-48 38-81 (110)
47 1wgs_A MYST histone acetyltran 91.9 0.45 1.6E-05 31.4 5.8 37 13-49 31-68 (133)
48 3m9q_A Protein MALE-specific l 89.6 0.62 2.1E-05 29.6 4.6 42 6-48 36-81 (101)
49 3e9g_A Chromatin modification- 79.9 2.2 7.4E-05 28.3 3.8 25 24-48 73-97 (130)
50 2k3y_A Chromatin modification- 58.8 4.7 0.00016 26.8 1.8 22 27-48 78-99 (136)
51 2eqm_A PHD finger protein 20-l 36.1 19 0.00064 21.8 1.8 21 27-47 49-69 (88)
52 4ft4_B DNA (cytosine-5)-methyl 33.8 66 0.0022 26.0 5.2 54 9-62 312-369 (784)
53 2kkm_A Translation machinery-a 27.4 82 0.0028 20.6 4.0 29 49-77 49-80 (144)
54 2a7y_A Hypothetical protein RV 21.5 36 0.0012 20.7 1.2 19 14-33 27-45 (83)
55 2be6_D Voltage-dependent L-typ 21.1 82 0.0028 16.2 2.3 18 50-67 13-30 (37)
No 1
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=99.86 E-value=2e-22 Score=124.79 Aligned_cols=58 Identities=29% Similarity=0.711 Sum_probs=52.6
Q ss_pred cCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC-ChHHHHHHHHHHH
Q psy2752 4 EEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEENW 61 (99)
Q Consensus 4 ~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l-~~~~ll~~f~~~~ 61 (99)
.+++++|+|++||++|...+|+++|||+|+||+..++||||++|| +|+.||.+|++++
T Consensus 16 ~~~~e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~~ 74 (75)
T 2rsn_A 16 ETDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKRK 74 (75)
T ss_dssp CCGGGCEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGGGTTTHHHHHHHHHHC
T ss_pred CCCCceEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHHccChHHHHHHHHHhh
Confidence 456789999999999985678999999999999999999999999 8999999998764
No 2
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=99.86 E-value=2.4e-22 Score=123.79 Aligned_cols=61 Identities=49% Similarity=0.948 Sum_probs=55.3
Q ss_pred ccCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHHHH
Q psy2752 3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVE 64 (99)
Q Consensus 3 ~~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~~~ 64 (99)
+++++++|+|++||++|. .+|.++|||+|+||+..++||||++||+|+++|.+|+.++...
T Consensus 7 ~~~~~~ey~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~nL~~~~li~~f~~~~~~~ 67 (73)
T 1ap0_A 7 LEEEEEEYVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTA 67 (73)
T ss_dssp CCSCSSCCEEEEEEEEEE-CSSSEEEEEEEESSSSCCCEEEETTTCCCHHHHHHHTTTTTSS
T ss_pred ccCCCceEEEEEEEEEEE-eCCeEEEEEEECCCCCccCcEeeHHHCCCHHHHHHHHHHhhcc
Confidence 345678999999999999 8999999999999999999999999999999999998876543
No 3
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.8e-22 Score=119.74 Aligned_cols=56 Identities=43% Similarity=0.940 Sum_probs=49.5
Q ss_pred ceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHHHH
Q psy2752 8 EVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVE 64 (99)
Q Consensus 8 ~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~~~ 64 (99)
++|+|++||++|. .+|.++|||+|+||+..++||||++||+|++||.+|++++..+
T Consensus 2 eey~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~f~~~~k~~ 57 (59)
T 3fdt_A 2 EEYVVEKVLDRRV-VKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKKM 57 (59)
T ss_dssp CEEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGEECHHHHHHHHC-----
T ss_pred CeEEEEEEEEEEE-eCCeEEEEEEEeCCCcccCCccchhHCCCHHHHHHHHHhhhhc
Confidence 6899999999999 7999999999999999999999999999999999999887654
No 4
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=99.86 E-value=1.6e-22 Score=120.98 Aligned_cols=59 Identities=39% Similarity=0.781 Sum_probs=54.7
Q ss_pred CcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC-ChHHHHHHHHHHHHHHH
Q psy2752 6 QEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEENWAVEQ 65 (99)
Q Consensus 6 ~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l-~~~~ll~~f~~~~~~~~ 65 (99)
++++|+|++||+++. .+|.++|||+|+||+..++||||++|| +|++||.+|+.++...+
T Consensus 1 ge~~y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~~~~~k 60 (62)
T 3lwe_A 1 GEDVFEVEKILDMKT-EGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAENK 60 (62)
T ss_dssp CCCSCCEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEE-cCCeEEEEEEEeCCCCcCCCeeeHhHhhccHHHHHHHHHhhHhhc
Confidence 467899999999999 899999999999999999999999999 89999999999887543
No 5
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=99.86 E-value=1.9e-22 Score=120.39 Aligned_cols=59 Identities=25% Similarity=0.530 Sum_probs=50.5
Q ss_pred ccCCcceEEEEEEeeceeecCCeE-EEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHH
Q psy2752 3 EEEQEEVYVIEKIVDKKLTKEGKV-KYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62 (99)
Q Consensus 3 ~~~~e~~y~Ve~Il~~r~~~~g~~-~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~ 62 (99)
+++++++|+|++||++|. .+|.. +|||+|+||+..++||||++||.|+.+|.+|+.++.
T Consensus 1 ~E~~~~ey~VE~Il~~r~-~~g~~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~~~~~rK 60 (61)
T 3g7l_A 1 GETDADVYEVEDILADRV-NKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKRK 60 (61)
T ss_dssp ----CCEEEEEEEEEEEE-CTTSCEEEEEEETTSCGGGCEEEEGGGGTBCHHHHHHHHHC-
T ss_pred CCCCCcEEEEEEEEEEEE-ECCCEEEEEEEEeCCCCcCCceeeHhHCCCHHHHHHHHHHhc
Confidence 356788999999999999 67776 999999999999999999999999999999988754
No 6
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=99.85 E-value=4.7e-22 Score=115.90 Aligned_cols=53 Identities=32% Similarity=0.772 Sum_probs=49.7
Q ss_pred cceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHH
Q psy2752 7 EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60 (99)
Q Consensus 7 e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~ 60 (99)
+++|+|++||++|. .+|+.+|||||+||+..++||||++||.|++||.+|+++
T Consensus 1 e~~y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~f~~R 53 (54)
T 3i91_A 1 ERVFAAEALLKRRI-RKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER 53 (54)
T ss_dssp -CEEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGBCCHHHHHHHHHC
T ss_pred CCeEEEEEEEEEEE-eCCcEEEEEEEeCCCcccCcccchhHCCCHHHHHHHHhc
Confidence 46899999999999 899999999999999999999999999999999999875
No 7
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=120.44 Aligned_cols=63 Identities=29% Similarity=0.610 Sum_probs=57.3
Q ss_pred ccCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHHHHHH
Q psy2752 3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQE 66 (99)
Q Consensus 3 ~~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~~~~~ 66 (99)
..+++++|+|++||++|. .+|.++|||||+||+..++||||++||.|+.+|.+|+.+......
T Consensus 4 ~~~~~~ey~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~nl~~~~li~~f~~~~~~k~~ 66 (74)
T 2d9u_A 4 GSSGEQVFAAECILSKRL-RKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKEHEKEV 66 (74)
T ss_dssp SCCCCCCCCEEEEEEEEE-ETTEEEEEEEETTSCTTTCEEEEGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCccEEEEEEEEEEE-eCCcEEEEEEECCCCCccCccccHHHCCCHHHHHHHHHhhhhhHH
Confidence 456788999999999999 899999999999999999999999999888999999998876554
No 8
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=99.85 E-value=7.2e-22 Score=115.18 Aligned_cols=53 Identities=34% Similarity=0.771 Sum_probs=49.5
Q ss_pred cceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHH
Q psy2752 7 EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60 (99)
Q Consensus 7 e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~ 60 (99)
+++|+|++||+++. .+|+.+|||||+||+..++||||++||.|++||.+|+++
T Consensus 1 e~~y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~f~~r 53 (54)
T 3h91_A 1 EQVFAAECILSKRL-RKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK 53 (54)
T ss_dssp CCEEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGBCSHHHHHHHHC-
T ss_pred CCceEEEEEEEEEE-eCCcEEEEEEEeCCCCcCCCeecHhHCCCHHHHHHHHhc
Confidence 46899999999999 899999999999999999999999999989999999865
No 9
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=99.85 E-value=9.8e-22 Score=125.91 Aligned_cols=58 Identities=40% Similarity=0.854 Sum_probs=52.1
Q ss_pred CCcceEEEEEEeeceee-cCCeEEEEEeeecCCC-CCCeecccCCC-ChHHHHHHHHHHHH
Q psy2752 5 EQEEVYVIEKIVDKKLT-KEGKVKYFLKWKDYPE-SDNTWEMAEDL-DCDDLIRAFEENWA 62 (99)
Q Consensus 5 ~~e~~y~Ve~Il~~r~~-~~g~~~YLVkW~gy~~-~~~TWEp~~~l-~~~~ll~~f~~~~~ 62 (99)
.++++|+|++||++|+. .+|+++|||+|+||+. .++||||++|| +|++||.+|+++++
T Consensus 26 ~~~eey~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~nl~~c~~li~~f~~~~~ 86 (92)
T 2rso_A 26 EEEDEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAYWNEHG 86 (92)
T ss_dssp CCCCCCCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGGGGTSHHHHHHHHHHHT
T ss_pred CcCceEEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHHHHhhHHHHHHHHHHHcC
Confidence 45678999999999985 4689999999999985 88999999999 89999999999875
No 10
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=117.95 Aligned_cols=61 Identities=26% Similarity=0.615 Sum_probs=55.6
Q ss_pred EEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHHHHHHhhhccC
Q psy2752 11 VIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAG 72 (99)
Q Consensus 11 ~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~~~~~~~kkrg 72 (99)
+||+||+++. .+|..+|||+|+||+..++||||++||+|++||.+|+.++.+...+++++.
T Consensus 2 EVE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~nl~c~~li~~f~~~~~~~l~~~~~~~ 62 (64)
T 3mts_A 2 EVEYLCDYKK-IREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQFHKDLERELLRRHHRS 62 (64)
T ss_dssp CEEEEEEEEE-CSSCEEEEEEETTSCGGGCEEEEGGGCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEE-eCCeEEEEEEEecCCCcCCcEeEHHHCCCHHHHHHHHHHHHHHHHhccccC
Confidence 5999999999 899999999999999999999999999999999999999997777655543
No 11
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=99.85 E-value=6.3e-22 Score=120.93 Aligned_cols=57 Identities=53% Similarity=1.130 Sum_probs=50.0
Q ss_pred cCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHH
Q psy2752 4 EEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW 61 (99)
Q Consensus 4 ~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~ 61 (99)
++++++|+|++||++|. .+|.++|||||+||+..+|||||++||+|++||.+|..++
T Consensus 11 ~~~~~ey~VEkIld~R~-~~g~~eYlVKWkGy~~~~~TWEp~enL~c~~lI~~F~~~~ 67 (69)
T 1q3l_A 11 EEEEEEYAVEKIIDRRV-RKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEASR 67 (69)
T ss_dssp -----CEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGEECHHHHHHHHHHC
T ss_pred ccCCCcEEEEEEEEEEE-ECCeEEEEEEEcCCCcccCCccchHHCCCHHHHHHHHHHc
Confidence 34667999999999999 8999999999999999999999999999999999998864
No 12
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=99.85 E-value=5.3e-22 Score=116.13 Aligned_cols=54 Identities=48% Similarity=0.984 Sum_probs=48.9
Q ss_pred ceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHH
Q psy2752 8 EVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62 (99)
Q Consensus 8 ~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~ 62 (99)
.+|+|++||++|. .+|..+|||+|+||+..++||||++||+|++||.+|++++.
T Consensus 1 gey~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~f~~~qk 54 (55)
T 3f2u_A 1 GEYVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 54 (55)
T ss_dssp CCCCEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGCCCHHHHHHHHC---
T ss_pred CcEEEEEEEEEEE-eCCeEEEEEEEEeCCCccCCeeEHHHCCCHHHHHHHHHHcc
Confidence 3699999999999 79999999999999999999999999999999999998764
No 13
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=99.84 E-value=1.5e-21 Score=120.14 Aligned_cols=57 Identities=35% Similarity=0.630 Sum_probs=49.5
Q ss_pred cCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHH
Q psy2752 4 EEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW 61 (99)
Q Consensus 4 ~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~ 61 (99)
..++++|+||+||++|. .+|.++|||+|+||+..++||||++||.|++||.+|..++
T Consensus 15 ~~~~~eyeVEkIld~r~-~~g~~~YlVKWkGy~~~~nTWEP~enL~~~~lI~~F~~~~ 71 (72)
T 1pdq_A 15 DPVDLVYAAEKIIQKRV-KKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQTN 71 (72)
T ss_dssp ---CEEEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGCCSTHHHHHHC---
T ss_pred CCCCceEEEEEEEEEEE-eCCcEEEEEEECCCCCccCeecchHHCCCHHHHHHHHHhc
Confidence 45778999999999999 8999999999999999999999999999999999998754
No 14
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=99.84 E-value=3.6e-21 Score=118.68 Aligned_cols=64 Identities=33% Similarity=0.645 Sum_probs=57.6
Q ss_pred ccCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHHHHHHh
Q psy2752 3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEA 67 (99)
Q Consensus 3 ~~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~~~~~~ 67 (99)
+.+++++|+|++||+++. .+|.++|||||+||+..+|||||++||.|+++|.+|+.+..+....
T Consensus 7 ~~~~~~~y~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~~L~~~~li~~f~~~~~~~~~~ 70 (74)
T 2kvm_A 7 SAIGEQVFAVESIRKKRV-RKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEERDRAS 70 (74)
T ss_dssp SSCCCCCCCEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEETTTCSCHHHHHHHHHHHHHHHTT
T ss_pred ccCCCccEEEEEEEEEEE-eCCcEEEEEEEcCCCCccCeEeeHHHCCCHHHHHHHHHHhhhhhhc
Confidence 355678999999999999 8999999999999999999999999998899999999988765543
No 15
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=99.84 E-value=8.4e-22 Score=118.51 Aligned_cols=59 Identities=27% Similarity=0.646 Sum_probs=53.8
Q ss_pred CccCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHH
Q psy2752 2 AEEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW 61 (99)
Q Consensus 2 ~~~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~ 61 (99)
++++++++|+|++||++|. .+|.++|||||+||+..++||||++||.|++||.+|+.++
T Consensus 3 ~~~~~~~ey~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~~l~~~~li~~f~~~~ 61 (64)
T 2dnv_A 3 SGSSGERVFAAEALLKRRI-RKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFESGP 61 (64)
T ss_dssp CCSSSCCCCCCCCEEEEEE-SSSSEEEEECCSSCCCSSCCEEETTTCCCHHHHHHHHCCT
T ss_pred cccCCCceEEEEEEEEEEE-eCCcEEEEEEECCCCcccCCccCHhHCCCHHHHHHHHHHc
Confidence 4566788999999999999 8999999999999999999999999997789999998754
No 16
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=99.83 E-value=2.2e-21 Score=113.44 Aligned_cols=53 Identities=38% Similarity=0.696 Sum_probs=49.9
Q ss_pred cceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHH
Q psy2752 7 EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60 (99)
Q Consensus 7 e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~ 60 (99)
+++|+|++||++|. .+|.++|||+|+||+..+|||||++||.|+++|.+|+.+
T Consensus 1 d~~y~VE~Il~~r~-~~g~~~YlVKWkgy~~~~~TWEp~~~l~~~~li~~f~~~ 53 (55)
T 1pfb_A 1 DLVYAAEKIIQKRV-KKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQT 53 (55)
T ss_dssp CEEEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGCCSTHHHHHHHTS
T ss_pred CCEEEEEEEEEEEE-eCCeEEEEEEEcCCCCccCcEeEHHHCCCHHHHHHHHHh
Confidence 46899999999999 899999999999999999999999999999999999864
No 17
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=99.83 E-value=1.5e-21 Score=121.46 Aligned_cols=61 Identities=38% Similarity=0.839 Sum_probs=54.7
Q ss_pred ccCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC-ChHHHHHHHHHHHHH
Q psy2752 3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEENWAV 63 (99)
Q Consensus 3 ~~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l-~~~~ll~~f~~~~~~ 63 (99)
+++++++|+|++||++|...+|.++|||||+||+..++||||++|| +|+++|.+|+.++..
T Consensus 7 ~~~~~~~y~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~~~~li~~f~~~~~~ 68 (78)
T 2dnt_A 7 GMASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTE 68 (78)
T ss_dssp CSCSSCSCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCTTCHHHHHHHHHHHSC
T ss_pred ccCCCceEEEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHHHHHhHHHHHHHHHhhhhc
Confidence 3557789999999999985578999999999999999999999999 999999999987753
No 18
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=99.83 E-value=1.5e-21 Score=120.39 Aligned_cols=58 Identities=36% Similarity=0.679 Sum_probs=50.9
Q ss_pred ccCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHH
Q psy2752 3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW 61 (99)
Q Consensus 3 ~~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~ 61 (99)
+.+++++|+|++||++|. .+|+++|||||+||+..+|||||++||.|++||.+|..++
T Consensus 15 ~~~~~~eyeVEkIld~r~-~~g~~~YlVKWkGy~~~~~TWEp~enL~~~~li~~F~~~~ 72 (73)
T 2k1b_A 15 YFQGEQVFAVESIRKKRV-RKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKE 72 (73)
T ss_dssp ----CCCCCCSEEEEEEE-ETTEEEEEEECTTCCGGGCCEEETTSCSCHHHHHHHHTSC
T ss_pred ccCCCceEEEEEEEEEEE-cCCcEEEEEEECCCCcccCeecchHHCCCHHHHHHHHHhc
Confidence 345678999999999999 8999999999999999999999999999999999998653
No 19
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=99.82 E-value=1.9e-22 Score=126.63 Aligned_cols=59 Identities=34% Similarity=0.799 Sum_probs=52.7
Q ss_pred cCCcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC-ChHHHHHHHHHHHH
Q psy2752 4 EEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEENWA 62 (99)
Q Consensus 4 ~~~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l-~~~~ll~~f~~~~~ 62 (99)
...+++|+|++||++|...+|+++|||+|+||+..++||||++|| +|++||.+|+++++
T Consensus 18 ~~~~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~~~~li~~f~~~~~ 77 (81)
T 4hae_A 18 GASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHM 77 (81)
T ss_dssp CTTSCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGGEEECCCCCCTTCSSCC
T ss_pred CCCCCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHHhhhhHHHHHHHHHHcc
Confidence 345678999999999985678999999999999999999999999 89999999987654
No 20
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=99.82 E-value=1.1e-21 Score=119.79 Aligned_cols=59 Identities=34% Similarity=0.762 Sum_probs=53.6
Q ss_pred ccCCcceEEEEEEeeceeecC-CeEE-EEEeeecCCCCCCeecccCCC-ChHHHHHHHHHHHH
Q psy2752 3 EEEQEEVYVIEKIVDKKLTKE-GKVK-YFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEENWA 62 (99)
Q Consensus 3 ~~~~e~~y~Ve~Il~~r~~~~-g~~~-YLVkW~gy~~~~~TWEp~~~l-~~~~ll~~f~~~~~ 62 (99)
+++++++|+|++||++|. .+ |+++ |||||+||+..++||||++|| +|++||.+|+.+..
T Consensus 2 ~~~~~~ey~VE~Il~~r~-~~~g~~~~YlVKWkGy~~~~~TWEp~enL~~~~~li~~f~~~~~ 63 (70)
T 1g6z_A 2 SSPKQEEYEVERIVDEKL-DRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRRKR 63 (70)
T ss_dssp CCCSSCSSCCCSCSEEEC-CTTSSCCEEEECCTTTTSSCCEEECGGGGSSCHHHHHHHHHHHT
T ss_pred CcCCCceEEEEEEEEEEE-cCCCcEEEEEEEECCCCCCCCceecHHHHhhhHHHHHHHHHhcc
Confidence 356778999999999999 55 8888 999999999999999999999 99999999998765
No 21
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.2e-17 Score=98.65 Aligned_cols=55 Identities=25% Similarity=0.571 Sum_probs=46.9
Q ss_pred CcceEEEEEEeeceee---cCC--eEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHH
Q psy2752 6 QEEVYVIEKIVDKKLT---KEG--KVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW 61 (99)
Q Consensus 6 ~e~~y~Ve~Il~~r~~---~~g--~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~ 61 (99)
..+.|+|++||++|.. ..| .++|||||+||+..++||||+++| ++++|.+|+.+.
T Consensus 8 ~pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~~~l-~~~~I~~f~~r~ 67 (68)
T 2epb_A 8 NPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDV-DPAKVKEFESLQ 67 (68)
T ss_dssp CSSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEETTTS-CHHHHHHHHHHC
T ss_pred CCCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccchhc-CHHHHHHHHHhh
Confidence 3556799999999862 236 899999999999999999999999 579999999753
No 22
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-16 Score=96.24 Aligned_cols=54 Identities=28% Similarity=0.642 Sum_probs=46.1
Q ss_pred CcceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHH
Q psy2752 6 QEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEE 59 (99)
Q Consensus 6 ~e~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~ 59 (99)
..+.+.|++||++|...+|.++|||||+|++.+++|||+++.. ..++.|+.|+.
T Consensus 8 ~pe~~~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~ 63 (64)
T 2ee1_A 8 KPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWN 63 (64)
T ss_dssp CCSSCCCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEETTCCCTTHHHHHHHHHH
T ss_pred CCCcEEEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCCcccCcchHHHHHHHHh
Confidence 4567799999999986689999999999999999999999932 45566999986
No 23
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=99.59 E-value=9.6e-18 Score=97.83 Aligned_cols=47 Identities=34% Similarity=0.801 Sum_probs=41.7
Q ss_pred EEEEEeeceeecC-CeE-EEEEeeecCCCCCCeecccCCCChHHHHHHHHHHH
Q psy2752 11 VIEKIVDKKLTKE-GKV-KYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW 61 (99)
Q Consensus 11 ~Ve~Il~~r~~~~-g~~-~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~ 61 (99)
+|++||++|. .+ |++ +|||||+|| +++||||++||+ +++|.+|+.++
T Consensus 2 ~VE~Ild~r~-~~~g~~~~YlVKWkgy--~~~TWEp~~nL~-~~li~~f~~~~ 50 (54)
T 1x3p_A 2 VAESVIGKRV-GDDGKTIEYLVKWTDM--SDATWEPQDNVD-STLVLLYQQQQ 50 (54)
T ss_dssp CSSCCCCBSS-CSSSCCCCBCCCCSSS--SSCSCSTTCCSS-SSSHHHHTSSC
T ss_pred eEEEEEEEEE-cCCCcEEEEEEEECCC--CcCCccchHHCC-HHHHHHHHHHc
Confidence 5899999999 55 888 999999999 689999999998 88999997643
No 24
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=99.47 E-value=5.5e-16 Score=102.62 Aligned_cols=59 Identities=24% Similarity=0.571 Sum_probs=47.7
Q ss_pred CcceEEEEEE------eeceeecCCeEEEEEeeecCCCCCCeecccCCCChH-----HHHHHHHHHHHHHH
Q psy2752 6 QEEVYVIEKI------VDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCD-----DLIRAFEENWAVEQ 65 (99)
Q Consensus 6 ~e~~y~Ve~I------l~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~-----~ll~~f~~~~~~~~ 65 (99)
...+|+|++| |+.+. ..|..+|||||+||+..+|||||++||.|+ .+|..|.++.....
T Consensus 33 ~~~~Y~VE~i~Dp~~ildkR~-~~g~~eYlVKWkG~s~~~nTWEp~enL~~~~~~g~kklenY~kk~~e~~ 102 (115)
T 2b2y_C 33 TTTIYAVEADGDPNAGFEKNK-EPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETK 102 (115)
T ss_dssp GGSHHHHHHHCBTTTTCCTTS-SSCEEEEEEEETTSCGGGCEEECHHHHHHHTCBCTHHHHHHHC------
T ss_pred CCceEEEeecCCcccccccce-eCCcEEEEEEECCCCchhcccCCHHHcCCccchHHHHHHHHHHHHHHHH
Confidence 4578899986 89888 899999999999999999999999999775 58999998865443
No 25
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=99.34 E-value=9.7e-14 Score=97.69 Aligned_cols=53 Identities=28% Similarity=0.616 Sum_probs=47.1
Q ss_pred cceEEEEEEeecee----ecCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHH
Q psy2752 7 EEVYVIEKIVDKKL----TKEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEE 59 (99)
Q Consensus 7 e~~y~Ve~Il~~r~----~~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~ 59 (99)
++.++|++||+++. ...|.++|||||+|++.+++||||+.++ .|+++|.+|+.
T Consensus 118 ~e~~~VErIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~ 176 (177)
T 2h1e_A 118 EEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQK 176 (177)
T ss_dssp HHTTSEEEEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEHHHHHHHCHHHHHHHTC
T ss_pred cccceeEEEEEEeeecccCCCCcEEEEEEeCCCCcccccccChHHhhhhHHHHHHHHHh
Confidence 34569999999997 3678999999999999999999999999 39999999975
No 26
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=99.28 E-value=9.8e-13 Score=93.23 Aligned_cols=51 Identities=20% Similarity=0.459 Sum_probs=46.6
Q ss_pred EEEEEeeceee--cCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHHHH
Q psy2752 11 VIEKIVDKKLT--KEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEENW 61 (99)
Q Consensus 11 ~Ve~Il~~r~~--~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~~~ 61 (99)
+|++||+++.. ..|.++|||||+|++.+++||||+.++ .|+++|.+|+.+.
T Consensus 132 ~VErIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~~~~i~~~~~~~I~~f~~R~ 186 (187)
T 2b2y_A 132 IVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRK 186 (187)
T ss_dssp SEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEEeeeecCCCCcEEEEEEECCCChhhCcccchhhhhhhHHHHHHHHHhhc
Confidence 89999999974 478999999999999999999999998 6999999999764
No 27
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.14 E-value=3.5e-12 Score=104.91 Aligned_cols=58 Identities=21% Similarity=0.542 Sum_probs=45.8
Q ss_pred CCcceEEEEEEeeceeec-------------------CCeEEEEEeeecCCCCCCeecccCCCC-hH--HHHHHHHHHHH
Q psy2752 5 EQEEVYVIEKIVDKKLTK-------------------EGKVKYFLKWKDYPESDNTWEMAEDLD-CD--DLIRAFEENWA 62 (99)
Q Consensus 5 ~~e~~y~Ve~Il~~r~~~-------------------~g~~~YLVkW~gy~~~~~TWEp~~~l~-~~--~ll~~f~~~~~ 62 (99)
.++++|.||+||+||. . +|.++|||||+||++.+|||||+++|. ++ ..|..|.++..
T Consensus 33 ~~~~~~~ve~vl~~r~-~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~~e~L~~~~~~~~~~~~~k~~~ 111 (800)
T 3mwy_W 33 QPEDFHGIDIVINHRL-KTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFI 111 (800)
T ss_dssp ---CCCBCSEEEEEEC-CCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEECHHHHCSCBTTHHHHHHHHHHT
T ss_pred ccCCCCchhhhccccc-cccccCCccccccCcCcCCCcCceEEEEEeCCcceeeccccCHHHHhhcchHHHHHHHHHHhh
Confidence 3567889999999999 6 778999999999999999999999984 22 23667777664
Q ss_pred H
Q psy2752 63 V 63 (99)
Q Consensus 63 ~ 63 (99)
.
T Consensus 112 ~ 112 (800)
T 3mwy_W 112 I 112 (800)
T ss_dssp H
T ss_pred h
Confidence 3
No 28
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=99.03 E-value=5.3e-12 Score=89.46 Aligned_cols=58 Identities=24% Similarity=0.550 Sum_probs=47.1
Q ss_pred CcceEEEEEE------eeceeecCCeEEEEEeeecCCCCCCeecccCCCCh-----HHHHHHHHHHHHHH
Q psy2752 6 QEEVYVIEKI------VDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDC-----DDLIRAFEENWAVE 64 (99)
Q Consensus 6 ~e~~y~Ve~I------l~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~-----~~ll~~f~~~~~~~ 64 (99)
....|.|+.| |+.+. ..|..+|||||+||+..+|||+|+++|.| ..+|..|.++....
T Consensus 33 ~~~~y~VE~i~d~~~~ld~r~-~~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~~~~~~kl~nf~kk~~~~ 101 (187)
T 2b2y_A 33 TTTIYAVEADGDPNAGFEKNK-EPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQET 101 (187)
T ss_dssp SSSHHHHHHHCCTTTTCC-CC-SCCEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHHHHHH
T ss_pred CceeEEeeccCCcccccCccc-cCCcEEEEEEECCCCcccCeeCCHHHhCccchhhHHHHHHHHHhhhcc
Confidence 4456777777 46666 67899999999999999999999999854 56799999998754
No 29
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=99.01 E-value=6.5e-11 Score=71.07 Aligned_cols=53 Identities=25% Similarity=0.482 Sum_probs=44.6
Q ss_pred ceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHH
Q psy2752 8 EVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW 61 (99)
Q Consensus 8 ~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~ 61 (99)
.-+++++|++... .+|.+.|||||+|++..+..+..+.|+.||.+|.+|++.+
T Consensus 11 rGle~ekI~g~~~-~~Gel~fLvKWKg~~~~d~Vpa~e~n~~~PqlVI~fYE~~ 63 (65)
T 3kup_A 11 RGLDPERIIGATD-SSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEER 63 (65)
T ss_dssp GCCCEEEEEEEEC-TTSSCEEEEEETTCSCCEEEEHHHHHHHCHHHHHHHHHHH
T ss_pred cCCCeeEEeeEEc-CCCcEEEEEEECCCChhheEEHHHHHhhChHHHHHHHHHh
Confidence 3568999999988 8999999999999988775555566668999999998765
No 30
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=98.99 E-value=1.2e-10 Score=81.81 Aligned_cols=53 Identities=23% Similarity=0.593 Sum_probs=45.5
Q ss_pred EEEEEeeceeecC-------------------CeEEEEEeeecCCCCCCeecccCCC-ChHHH--HHHHHHHHHHH
Q psy2752 11 VIEKIVDKKLTKE-------------------GKVKYFLKWKDYPESDNTWEMAEDL-DCDDL--IRAFEENWAVE 64 (99)
Q Consensus 11 ~Ve~Il~~r~~~~-------------------g~~~YLVkW~gy~~~~~TWEp~~~l-~~~~l--l~~f~~~~~~~ 64 (99)
.|+.||+||.. . +..+|||||+||+..+|||+|+++| .|+.+ |..|.++....
T Consensus 14 ~id~v~~hr~~-~~~~~~~~~~~~~~~~~~~~~~~EYlVKWKg~Sy~HnTWe~ee~L~~~~glkKl~nf~kk~~~~ 88 (177)
T 2h1e_A 14 GIDIVINHRLK-TSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIE 88 (177)
T ss_dssp CEEEEEEEEEC-TTSCGGGGCCSSCCCHHHHHHHEEEEEEETTSCGGGCEEECHHHHCSCTTHHHHHHHHHHHTHH
T ss_pred cceeeecCCcc-ccccccccccccCcccCCCCCceEEEEEECCCccccCeecCHHHHhhchHHHHHHHHHHHhhhh
Confidence 59999999983 2 2479999999999999999999999 48888 88999887643
No 31
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=98.91 E-value=5e-10 Score=68.74 Aligned_cols=51 Identities=22% Similarity=0.438 Sum_probs=45.6
Q ss_pred ceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHHHH
Q psy2752 8 EVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEENW 61 (99)
Q Consensus 8 ~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~~~ 61 (99)
..|++++|++... ..|.+.|||+|+|++. .+|+|...+ .||.+|.+|++.+
T Consensus 14 rGl~~ekI~g~~~-~~Gel~fLvkWkg~d~--~dlVpa~~a~~k~Pq~VI~FYE~~ 66 (74)
T 2fmm_A 14 RGLEPERIIGATD-SSGELMFLMKWKNSDE--ADLVPAKEANVKCPQVVISFYEER 66 (74)
T ss_dssp GCCCEEEEEEEEE-ETTEEEEEEEETTCSC--CEEEEHHHHHHHCHHHHHHHHHTT
T ss_pred ccCCceEEEEEEc-CCCcEEEEEEECCCCc--ccEEEHHHHhhhChHHHHHHHHHh
Confidence 4589999999998 8999999999999775 679999988 7999999999864
No 32
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=98.84 E-value=2.3e-10 Score=70.51 Aligned_cols=52 Identities=27% Similarity=0.467 Sum_probs=39.4
Q ss_pred eEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHH
Q psy2752 9 VYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW 61 (99)
Q Consensus 9 ~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~ 61 (99)
.+++++|++... .+|.+.|||||+|++..+..+..+.|+.||.+|++|++.+
T Consensus 22 Gle~EkIlg~t~-~~Gel~fLVKWKg~~e~dlVpa~ean~k~PqlVI~FYEer 73 (75)
T 3i3c_A 22 GLEPEKIIGATD-SCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEER 73 (75)
T ss_dssp CCCEEEEEEEEC----CCEEEEEETTSSCEEEEEHHHHHHHCHHHHHHHHTC-
T ss_pred CCCeeEEeeEEc-cCCcEEEEEEECCCChhceEEHHHHhhhChHHHHHHHHHh
Confidence 468999999988 8999999999999887664444455558999999998754
No 33
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=98.83 E-value=9.8e-10 Score=69.41 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=46.7
Q ss_pred ceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHH
Q psy2752 8 EVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62 (99)
Q Consensus 8 ~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~ 62 (99)
.-+++++||+... .+|.+.|||+|+|++..+..+..+.|+.||.+|++|+..+-
T Consensus 24 RGle~EkIlgat~-~~Gel~fLVKWKg~~e~DlVpa~ean~k~PqlVI~FYEerl 77 (87)
T 3p7j_A 24 RGLEAEKILGASD-NNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMVIHFYEERL 77 (87)
T ss_dssp TTCCEEEEEEEEE-ETTEEEEEEEETTCSSCEEEEHHHHHHHCHHHHHHHHHHTC
T ss_pred CCCCceEEeeEEc-cCCcEEEEEEECCCCccceEeHHHHhhhChHHHHHHHHHhc
Confidence 3568999999988 89999999999999988877777777789999999987654
No 34
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=98.80 E-value=5.5e-10 Score=69.24 Aligned_cols=54 Identities=20% Similarity=0.410 Sum_probs=43.8
Q ss_pred ceEEEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHH
Q psy2752 8 EVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62 (99)
Q Consensus 8 ~~y~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~ 62 (99)
-.+++++|++... ..|.+.|||+|+|++..+..+..+.|+.||.+|++|+..+-
T Consensus 8 rGle~EkI~g~~~-~~Gel~fLvKWKg~~~~dlVpa~ean~k~PqlVI~FYE~~l 61 (78)
T 3q6s_A 8 RGLEPERIIGATD-SSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERL 61 (78)
T ss_dssp GCCCEEEEEEEEC-TTSSCEEEEEETTCSCEEEEEHHHHHHHSHHHHHHHHHTTE
T ss_pred cCCCceEEeeEEc-CCCcEEEEEEECCCChhheEeHHHHHhhChHHHHHHHHHhc
Confidence 3568999999988 89999999999998876644444555579999999988765
No 35
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.63 E-value=8.9e-06 Score=66.91 Aligned_cols=54 Identities=24% Similarity=0.535 Sum_probs=43.7
Q ss_pred eEEEEEEeeceee----cCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHHHHH
Q psy2752 9 VYVIEKIVDKKLT----KEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEENWA 62 (99)
Q Consensus 9 ~y~Ve~Il~~r~~----~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~~~~ 62 (99)
...|++||+++.. ..+..+|||||+|.+.+++|||....+ ..++.|..|..+..
T Consensus 145 ~~~veRii~~~~~~~~~~~~~~~yLvKW~~L~y~~~tWe~~~~~~~~~~~~i~~~~~r~~ 204 (800)
T 3mwy_W 145 FHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNREN 204 (800)
T ss_dssp TTCEEEECCCCCEECTTSCEECBCCEEETTSCSTTCBCCBHHHHTTTCHHHHHHHHHTTT
T ss_pred ccceeEEEeecccccCCCCCceEEEEEecCCCcccccccchhhhhhhhHHHHHHHHHhhh
Confidence 3379999998862 345689999999999999999998776 46788888876554
No 36
>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=97.32 E-value=9.9e-05 Score=44.31 Aligned_cols=48 Identities=17% Similarity=0.353 Sum_probs=37.4
Q ss_pred EEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC--ChHHHHHHHHHHH
Q psy2752 11 VIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEENW 61 (99)
Q Consensus 11 ~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l--~~~~ll~~f~~~~ 61 (99)
.|++|++......|.+.|||+|+|... +..|.... .||.+|.+|++.+
T Consensus 12 ~Ve~I~g~~~~~~g~L~flikwk~~~~---~~Vpa~~a~~kcPq~vI~FYE~~ 61 (68)
T 1e0b_A 12 LVSSIDTIERKDDGTLEIYLTWKNGAI---SHHPSTITNKKCPQKMLQFYESH 61 (68)
T ss_dssp TEEEEEEEEECTTSCEEEEEEETTSCE---EEEEHHHHHHHSHHHHHHHHHTC
T ss_pred heeEEEEEEECCCCEEEEEEEECCCCc---cceEHHHhHhhCCHHHHHHHHHh
Confidence 477888776646899999999998543 34777655 6999999999865
No 37
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=95.71 E-value=0.023 Score=36.35 Aligned_cols=34 Identities=24% Similarity=0.549 Sum_probs=30.3
Q ss_pred EEeeceeecCCeEEEEEeeecCCCCCCeecccCCC
Q psy2752 14 KIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL 48 (99)
Q Consensus 14 ~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l 48 (99)
+||..+. .++...|+|.+.||....+-|.|++.|
T Consensus 41 kIl~v~~-~~~~~~Y~VHY~GwNkR~DEWV~~~Rl 74 (102)
T 2f5k_A 41 KCVKVAI-KDKQVKYFIHYSGWNKNWDEWVPESRV 74 (102)
T ss_dssp EEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred EEEEEEE-cCCCcEEEEEeCCcCCCceeeccHhhc
Confidence 5667666 688999999999999999999999998
No 38
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=95.36 E-value=0.017 Score=35.02 Aligned_cols=35 Identities=17% Similarity=0.501 Sum_probs=30.2
Q ss_pred EEEeeceeecCCeEEEEEeeecCCCCCCeecccCCC
Q psy2752 13 EKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL 48 (99)
Q Consensus 13 e~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l 48 (99)
-+||..+. ..|...|+|.+.||....+-|.|.+.|
T Consensus 27 AkIl~i~~-~~~~~~Y~VHY~gwnkr~DEWV~~~ri 61 (76)
T 2lcc_A 27 ASIKSTEI-DDGEVLYLVHYYGWNVRYDEWVKADRI 61 (76)
T ss_dssp EEEEEEEE-ETTEEEEEEEETTSCCSSCEEEEGGGE
T ss_pred EEEEEEEc-cCCceEEEEEeCCcCCCceEecChhhc
Confidence 35666666 788999999999999999999999877
No 39
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=95.22 E-value=0.039 Score=38.27 Aligned_cols=48 Identities=27% Similarity=0.626 Sum_probs=37.4
Q ss_pred EEEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCChHHHHHHHHHHHH
Q psy2752 11 VIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62 (99)
Q Consensus 11 ~Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~~~ll~~f~~~~~ 62 (99)
.+..++..+. ..+..+||++|.++. .++|.+..++. +.++.+|.....
T Consensus 188 ~~~~~~~~~~-~~~~~e~l~~~~~~~--~~~w~~~~~i~-~~li~~y~~~~~ 235 (244)
T 3ui2_A 188 EVDEIVEKRG-KGKDVEYLVRWKDGG--DCEWVKGVHVA-EDVAKDYEDGLE 235 (244)
T ss_dssp EEEEEEEEES-CTTSCEEEEEESSSS--CEEEEESTTBC-HHHHHHHHHHHC
T ss_pred cHHHHHHHhc-cCcchhhhhhhcCCC--CCCcCcchhcC-HHHHHHHHHHHH
Confidence 4566777776 677889999997654 67999999987 578889877654
No 40
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.19 E-value=0.043 Score=34.11 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=31.6
Q ss_pred EEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCCh
Q psy2752 13 EKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDC 50 (99)
Q Consensus 13 e~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~~ 50 (99)
-+||..+. ..+..+|+|.+.||....+-|.+.+.|+.
T Consensus 32 AkIl~i~~-~~~~~~YyVHY~g~NkRlDEWV~~~rl~~ 68 (87)
T 2eko_A 32 AEILSVKD-ISGRKLFYVHYIDFNRRLDEWVTHERLDL 68 (87)
T ss_dssp EEEEEECC-SSSCCCEEEEECSSCSCCCEEECTTTBCG
T ss_pred EEEEEEEE-cCCCcEEEEEeCCCCcccccccCHhHccc
Confidence 45677666 67889999999999999999999999953
No 41
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.059 Score=33.77 Aligned_cols=37 Identities=11% Similarity=0.496 Sum_probs=31.6
Q ss_pred EEEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCC
Q psy2752 12 IEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLD 49 (99)
Q Consensus 12 Ve~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~ 49 (99)
--+||..+. ..|..+|+|.+.||....+-|.+.+.|+
T Consensus 40 ~AkIl~ir~-~~~~~~YyVHY~g~NkRlDEWV~~~rl~ 76 (92)
T 2ro0_A 40 LAEILSINT-RKAPPKFYVHYVNYNKRLDEWITTDRIN 76 (92)
T ss_dssp EEEEEEEEC-SSSSCEEEEEETTSCTTSCEEEEGGGEE
T ss_pred EEEEEEEEE-cCCCcEEEEEeCCcCcccccccCHhHcc
Confidence 346777777 6788999999999999999999999883
No 42
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=94.03 E-value=0.075 Score=33.50 Aligned_cols=36 Identities=11% Similarity=0.484 Sum_probs=31.5
Q ss_pred EEEeeceeecCCeEEEEEeeecCCCCCCeecccCCCC
Q psy2752 13 EKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLD 49 (99)
Q Consensus 13 e~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l~ 49 (99)
-+||..+. ..|..+|+|.+.||...-+-|.+.+.|+
T Consensus 43 AeIl~ir~-~~g~~~YYVHY~g~NkRlDEWV~~~RI~ 78 (94)
T 2rnz_A 43 AEILSINT-RKAPPKFYVHYVNYNKRLDEWITTDRIN 78 (94)
T ss_dssp EEEEEEEC-SSSSCEEEEECTTSCSTTCEEEETTTBC
T ss_pred EEEEEEEE-cCCCcEEEEEeCCcCcccccccCHHHcc
Confidence 46777777 6788999999999999999999999884
No 43
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=93.75 E-value=0.077 Score=34.39 Aligned_cols=40 Identities=25% Similarity=0.527 Sum_probs=29.8
Q ss_pred ceEEEEEEeeceeec--CC--eEEEEEeeecCCCCCCeecccCCC
Q psy2752 8 EVYVIEKIVDKKLTK--EG--KVKYFLKWKDYPESDNTWEMAEDL 48 (99)
Q Consensus 8 ~~y~Ve~Il~~r~~~--~g--~~~YLVkW~gy~~~~~TWEp~~~l 48 (99)
..|+. +||+.+... .| ...|+|.+.||....+-|.|++.|
T Consensus 38 ~lYeA-KIl~v~~~~~~~g~~~~~Y~VHY~GWn~~wDEWV~e~rl 81 (110)
T 3m9p_A 38 VLYDA-KIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHV 81 (110)
T ss_dssp CEEEE-EEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred Cceee-EEEEEEeccCcccccceEEEEEECCCCcchhhccCHhhh
Confidence 44553 455555422 23 489999999999999999999998
No 44
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=92.18 E-value=0.017 Score=35.69 Aligned_cols=34 Identities=15% Similarity=0.480 Sum_probs=28.9
Q ss_pred EEeeceeecCCeEEEEEeeecCCCCCCeecccCCC
Q psy2752 14 KIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL 48 (99)
Q Consensus 14 ~Il~~r~~~~g~~~YLVkW~gy~~~~~TWEp~~~l 48 (99)
+||..+. .+|...|+|.+.||....+-|.|++.|
T Consensus 31 kIl~i~~-~~~~~~YyVHY~GwNkR~DEWV~~~Rl 64 (85)
T 2lrq_A 31 KVLKTKP-DATPVEYYIHYAGWSKNWDEWVPENRV 64 (85)
Confidence 4566565 567889999999999999999999887
No 45
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=92.86 E-value=0.16 Score=31.89 Aligned_cols=36 Identities=8% Similarity=0.327 Sum_probs=29.3
Q ss_pred EEEeeceeec--CCeEEEEEeeecCCCCCCeecccCCC
Q psy2752 13 EKIVDKKLTK--EGKVKYFLKWKDYPESDNTWEMAEDL 48 (99)
Q Consensus 13 e~Il~~r~~~--~g~~~YLVkW~gy~~~~~TWEp~~~l 48 (99)
-+||..+... .+..+|+|.|.||...-+-|.+.+.|
T Consensus 33 AeIl~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~RL 70 (92)
T 2bud_A 33 GQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRI 70 (92)
T ss_dssp EEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTE
T ss_pred EEEEEEeeccCCCCCcEEEEEeCCcccccccccCHHHh
Confidence 3566666622 26789999999999999999999998
No 46
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=92.24 E-value=0.23 Score=32.09 Aligned_cols=40 Identities=20% Similarity=0.447 Sum_probs=29.3
Q ss_pred ceEEEEEEeeceee--cC--CeEEEEEeeecCCCCCCeecccCCC
Q psy2752 8 EVYVIEKIVDKKLT--KE--GKVKYFLKWKDYPESDNTWEMAEDL 48 (99)
Q Consensus 8 ~~y~Ve~Il~~r~~--~~--g~~~YLVkW~gy~~~~~TWEp~~~l 48 (99)
-.|+. +||+.... .. +...|+|...||....+-|.|++.|
T Consensus 38 llYeA-KIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drl 81 (110)
T 3oa6_A 38 VLYDA-KIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHV 81 (110)
T ss_dssp CEEEE-EEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred ccEEE-EEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhh
Confidence 34654 46655432 22 2468999999999999999999998
No 47
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=91.85 E-value=0.45 Score=31.42 Aligned_cols=37 Identities=11% Similarity=0.522 Sum_probs=30.3
Q ss_pred EEEeeceee-cCCeEEEEEeeecCCCCCCeecccCCCC
Q psy2752 13 EKIVDKKLT-KEGKVKYFLKWKDYPESDNTWEMAEDLD 49 (99)
Q Consensus 13 e~Il~~r~~-~~g~~~YLVkW~gy~~~~~TWEp~~~l~ 49 (99)
-+||..+.. ..+..+|+|.+.||....+-|.+.+.|+
T Consensus 31 AkIl~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~ri~ 68 (133)
T 1wgs_A 31 AEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLA 68 (133)
T ss_dssp EEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSC
T ss_pred EEEEEEEeccCCCceEEEEeccCcCCCceeecChhhcc
Confidence 356665542 3578999999999999999999999984
No 48
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=89.59 E-value=0.62 Score=29.60 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=31.4
Q ss_pred CcceEEEEEEeeceee----cCCeEEEEEeeecCCCCCCeecccCCC
Q psy2752 6 QEEVYVIEKIVDKKLT----KEGKVKYFLKWKDYPESDNTWEMAEDL 48 (99)
Q Consensus 6 ~e~~y~Ve~Il~~r~~----~~g~~~YLVkW~gy~~~~~TWEp~~~l 48 (99)
+...|+. +||+.... ..+...|+|...||....+-|.|++.|
T Consensus 36 g~~lYeA-KIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRi 81 (101)
T 3m9q_A 36 ARVLYTS-KVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVL 81 (101)
T ss_dssp CCCEEEE-EEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGE
T ss_pred CCcceEe-EEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHc
Confidence 4455653 45555442 245789999999999999999999998
No 49
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=79.89 E-value=2.2 Score=28.27 Aligned_cols=25 Identities=12% Similarity=0.409 Sum_probs=22.6
Q ss_pred CeEEEEEeeecCCCCCCeecccCCC
Q psy2752 24 GKVKYFLKWKDYPESDNTWEMAEDL 48 (99)
Q Consensus 24 g~~~YLVkW~gy~~~~~TWEp~~~l 48 (99)
....|||.+.||...-+-|.|++.|
T Consensus 73 ~~~~Y~VHY~GWn~~WDEWV~e~rv 97 (130)
T 3e9g_A 73 NGKCFFIHYQGWKSSWDEWVGYDRI 97 (130)
T ss_dssp TSCEEEEEETTSCGGGCEEEETTTE
T ss_pred cCceEEEEeCCCCCChhhccCHhhh
Confidence 3458999999999999999999998
No 50
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=58.77 E-value=4.7 Score=26.76 Aligned_cols=22 Identities=14% Similarity=0.545 Sum_probs=21.3
Q ss_pred EEEEeeecCCCCCCeecccCCC
Q psy2752 27 KYFLKWKDYPESDNTWEMAEDL 48 (99)
Q Consensus 27 ~YLVkW~gy~~~~~TWEp~~~l 48 (99)
.|+|...||...-+-|.+++.|
T Consensus 78 ~Y~VHY~GWn~rwDEWV~~dRi 99 (136)
T 2k3y_A 78 SFFIHYQGWKSSWDEWVGYDRI 99 (136)
T ss_dssp EEEECCTTSCGGGCEEEETTTE
T ss_pred eEEEEeCCcCCcceeeecHhhh
Confidence 8999999999999999999998
No 51
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=36.13 E-value=19 Score=21.79 Aligned_cols=21 Identities=10% Similarity=0.427 Sum_probs=18.9
Q ss_pred EEEEeeecCCCCCCeecccCC
Q psy2752 27 KYFLKWKDYPESDNTWEMAED 47 (99)
Q Consensus 27 ~YLVkW~gy~~~~~TWEp~~~ 47 (99)
.|||.+.||+...+-|.+...
T Consensus 49 ~v~VHfdGW~~~yDeWv~~dS 69 (88)
T 2eqm_A 49 KMLVHFERWSHRYDEWIYWDS 69 (88)
T ss_dssp EEEEEESSSTTTEEEEEETTS
T ss_pred EEEEEECCCCCcccEEeeCCC
Confidence 799999999999999998763
No 52
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=33.77 E-value=66 Score=26.01 Aligned_cols=54 Identities=30% Similarity=0.659 Sum_probs=39.4
Q ss_pred eEEEEEEeeceee---cCCeEEEEEeeecCCCCCCeecccCCC-ChHHHHHHHHHHHH
Q psy2752 9 VYVIEKIVDKKLT---KEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEENWA 62 (99)
Q Consensus 9 ~y~Ve~Il~~r~~---~~g~~~YLVkW~gy~~~~~TWEp~~~l-~~~~ll~~f~~~~~ 62 (99)
.+.++.|.+-... ......+.+.|.++.....+|+|...+ +|...|..+.....
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~~~~~ 369 (784)
T 4ft4_B 312 EFVVEKLVGICYGGSDRENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREFVQEGH 369 (784)
T ss_dssp CCCEEEEEEEEESCSSSCSSEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccchhhhcccccccccccccccccccchhccccccccc
Confidence 4455555554432 345788999999999999999999998 67777766655444
No 53
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=27.38 E-value=82 Score=20.57 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHHHHHHh---hhccCCCCCC
Q psy2752 49 DCDDLIRAFEENWAVEQEA---KKKAGEPTES 77 (99)
Q Consensus 49 ~~~~ll~~f~~~~~~~~~~---~kkrg~~~~~ 77 (99)
.+..||..|..++..+-.. .++.|||.++
T Consensus 49 e~~~lI~~yl~R~d~ELeql~~~rR~gRp~s~ 80 (144)
T 2kkm_A 49 HTREFIQSFIERDDTELDELKKKRRSNRPPSN 80 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTCCCTT
T ss_pred HHHHHHHHHHhcCcHHHHHHHHhhCCCCCCch
Confidence 3677999999888854322 3456776643
No 54
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=21.53 E-value=36 Score=20.70 Aligned_cols=19 Identities=21% Similarity=0.719 Sum_probs=14.4
Q ss_pred EEeeceeecCCeEEEEEeee
Q psy2752 14 KIVDKKLTKEGKVKYFLKWK 33 (99)
Q Consensus 14 ~Il~~r~~~~g~~~YLVkW~ 33 (99)
.|+.-+. .+|..-|+|+|.
T Consensus 27 eIvEV~g-~dG~PPY~VRw~ 45 (83)
T 2a7y_A 27 EIIEVRS-ADGSPPYVVRWL 45 (83)
T ss_dssp EEEECSC-SSSCSCEEEEET
T ss_pred EEEEEEC-CCCCCCEEEEec
Confidence 4666666 678889999993
No 55
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=21.05 E-value=82 Score=16.18 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHh
Q psy2752 50 CDDLIRAFEENWAVEQEA 67 (99)
Q Consensus 50 ~~~ll~~f~~~~~~~~~~ 67 (99)
+.-||++|+.+....++.
T Consensus 13 atfLIQdyFRkfkkrke~ 30 (37)
T 2be6_D 13 ATFLIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556899999888877665
Done!