RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2752
(99 letters)
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail,
choromatin organization modifier, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Length = 64
Score = 64.3 bits (157), Expect = 1e-15
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 2 AEEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60
+ E V+ E ++ +++ K G+++Y +KWK + + +TWE E++ L+ AFE
Sbjct: 3 SGSSGERVFAAEALLKRRIRK-GRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFESG 60
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3
tail, choromatin organization modifier, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Length = 78
Score = 64.0 bits (156), Expect = 2e-15
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 2 AEEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEEN 60
+ EE+Y +E+IVDK+ K+GK +Y ++WK Y D+TWE + L +C++ I F
Sbjct: 6 SGMASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRR 65
Query: 61 WAVEQEAKKKA 71
+Q+ +
Sbjct: 66 HTEKQKESGPS 76
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide
complex, silencing, cell cycle, chromosome partition,
DNA-binding, nucleus; HET: M3L; 2.20A
{Schizosaccharomyces pombe}
Length = 61
Score = 61.2 bits (149), Expect = 2e-14
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 4 EEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEE 59
E +VY +E I+ ++ K G +Y++KW Y DNTWE ++L + +++ +++
Sbjct: 2 ETDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKK 58
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb,
chromodomain, peptide binding protein; HET: M3L; 1.40A
{Drosophila melanogaster} SCOP: b.34.13.2
Length = 55
Score = 60.4 bits (147), Expect = 3e-14
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 7 EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60
+ VY EKI+ K++ K G V+Y +KWK + + NTWE ++ LI +E+
Sbjct: 1 DLVYAAEKIIQKRVKK-GVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQT 53
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2,
structural genomics, structural genomics consortium,
SGC, chromatin regulator, D binding, nucleus; HET: M3L;
1.50A {Homo sapiens} PDB: 2k28_A 3i8z_A
Length = 54
Score = 60.4 bits (147), Expect = 3e-14
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 7 EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEE 59
E+V+ E I+ K+L K GK++Y +KW+ + N+WE E++ L+ AF++
Sbjct: 1 EQVFAAECILSKRLRK-GKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK 52
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1,
structural genomics, struct genomics consortium, SGC,
centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A*
2l11_A* 3dm1_A*
Length = 55
Score = 59.6 bits (145), Expect = 6e-14
Identities = 27/51 (52%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Query: 10 YVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60
YV+EK++D+++ K GKV+Y LKWK + + DNTWE E+LDC DLI F ++
Sbjct: 3 YVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS 52
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif,
alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB:
1guw_A*
Length = 73
Score = 60.2 bits (146), Expect = 6e-14
Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62
EE+EE YV+EK++D+++ K GKV+Y LKWK + + DNTWE E+LDC DLI F ++
Sbjct: 7 LEEEEEEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 65
Query: 63 VEQEAKK 69
E K
Sbjct: 66 TAHETDK 72
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin
regulator, nucleus, repressor, transcription,
transcription regulation; NMR {Homo sapiens} PDB:
2l12_A* 2l1b_A*
Length = 73
Score = 59.4 bits (144), Expect = 1e-13
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEE 59
+ E+V+ +E I K++ K GKV+Y +KWK +P +TWE E + L+ A+EE
Sbjct: 15 YFQGEQVFAVESIRKKRVRK-GKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEE 70
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin,
methyllysine, monomethyllysine, structural protein;
HET: MLZ; 1.64A {Drosophila melanogaster} SCOP:
b.34.13.2 PDB: 1kne_A* 1kna_A*
Length = 69
Score = 59.3 bits (144), Expect = 1e-13
Identities = 31/59 (52%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENW 61
EE+EE Y +EKI+D+++ K G V+Y+LKWK YPE++NTWE +LDC DLI+ +E +
Sbjct: 10 AEEEEEEYAVEKIIDRRVRK-GMVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEASR 67
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine
methylation, trimethyllysine, cation-PI, chromo,
structural protein; HET: M3L; 1.76A {Drosophila
melanogaster} SCOP: b.34.13.2
Length = 72
Score = 59.4 bits (144), Expect = 1e-13
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60
++ + VY EKI+ K++ K G V+Y +KWK + + NTWE ++ LI +E+
Sbjct: 14 DDPVDLVYAAEKIIQKRVKK-GVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQT 70
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8,
structural genomics structural genomics consortium,
SGC, chromatin regulator, N phosphoprotein, repressor;
HET: M3L; 1.55A {Homo sapiens} PDB: 3gv6_A* 3i90_A*
Length = 54
Score = 58.5 bits (142), Expect = 2e-13
Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 7 EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEE 59
E V+ E ++ +++ K G+++Y +KWK + + +TWE E++ L+ AFEE
Sbjct: 1 ERVFAAEALLKRRIRK-GRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEE 52
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2,
chromo domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 74
Score = 59.0 bits (143), Expect = 2e-13
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62
E+V+ E I+ K+L K GK++Y +KW+ + N+WE E++ L+ AF++
Sbjct: 4 GSSGEQVFAAECILSKRLRK-GKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKEH 62
Query: 63 VEQEAKKKA 71
++
Sbjct: 63 EKEVQNSGP 71
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural
GENO structural genomics consortium, SGC, centromere,
nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Length = 59
Score = 58.1 bits (141), Expect = 2e-13
Identities = 26/59 (44%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 8 EVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQE 66
E YV+EK++D+++ K G+V+Y LKWK + E NTWE ++LDC +LI F + + +E
Sbjct: 2 EEYVVEKVLDRRVVK-GQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKKMKE 59
>2kvm_A Chromobox protein homolog 7; histone modification, lysine
methylation, chromobox, polycom chromatin-binding; HET:
MLY; NMR {Mus musculus}
Length = 74
Score = 58.7 bits (142), Expect = 3e-13
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62
E+V+ +E I K++ K GKV+Y +KWK +P +TWE E + L+ A+EE
Sbjct: 7 SAIGEQVFAVESIRKKRVRK-GKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEE 65
Query: 63 VEQEAKKK 70
++ + +
Sbjct: 66 RDRASGYR 73
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP:
b.34.13.2
Length = 70
Score = 56.3 bits (136), Expect = 2e-12
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 3 EEEQEEVYVIEKIVDKKLTKEGKVKYFL-KWKDYPESDNTWEMAEDL-DCDDLIRAFEEN 60
++E Y +E+IVD+KL + G VK + +W +Y +TWE E+L C ++ ++
Sbjct: 2 SSPKQEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRR 61
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone
methyltransferase, histone-lysine N-methyltransferas
SUV39H1, histone H3, TRI-methylation; 2.20A {Homo
sapiens}
Length = 64
Score = 54.7 bits (132), Expect = 7e-12
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 12 IEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKK 70
+E + D K + + Y +KW+ YP+S++TWE ++L C +++ F ++ E +
Sbjct: 3 VEYLCDYKKIR-EQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQFHKDLERELLRRHH 60
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural
genomics consortium, S repeat, nucleus, cell cycle;
2.05A {Homo sapiens} PDB: 3r93_A* 3svm_A* 3qo2_A*
Length = 62
Score = 54.3 bits (131), Expect = 9e-12
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 7 EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEEN 60
E+V+ +EKI+D K GKV Y ++WK Y D+TWE L DC +++ F +
Sbjct: 2 EDVFEVEKILDMKTEG-GKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKK 55
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP-
dependent helicase CHD4, CHD-4, MI-2 autoantigen 218
kDa protein, MI2-beta; NMR {Homo sapiens}
Length = 64
Score = 40.7 bits (95), Expect = 2e-06
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 2 AEEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAED--LDCDDLIRAF 57
+ E +I +I++ + K+G V Y +KW+D P +WE + D D +++
Sbjct: 4 GSSGKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSY 61
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 37.6 bits (87), Expect = 4e-05
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 2 AEEEQEEVYVIEKIVDKKL-----TKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRA 56
+ +++I++ T E Y +KW P ++TWE+ ED+D ++
Sbjct: 4 GSSGNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVD-PAKVKE 62
Query: 57 FEE 59
FE
Sbjct: 63 FES 65
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein
translocation, unknown function; NMR {Arabidopsis
thaliana} SCOP: b.34.13.2
Length = 54
Score = 32.7 bits (74), Expect = 0.002
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 11 VIEKIVDKKLTKEGK-VKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60
V E ++ K++ +GK ++Y +KW D SD TWE +++D L+ +++
Sbjct: 2 VAESVIGKRVGDDGKTIEYLVKWTDM--SDATWEPQDNVD-STLVLLYQQQ 49
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 32.8 bits (75), Expect = 0.009
Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 1 MAEEEQEEVYVIEKIVDKKLT----KEGKVKYFLKWKDYPESDNTWEMAEDLD--CDDLI 54
+E EE +V E+I+D + +++Y +KW+ + TWE A D+ + +
Sbjct: 137 RRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQV 196
Query: 55 RAFEENWAVEQEAKKKAGEPTE 76
+ F+ + + + ++
Sbjct: 197 KHFQNRENSKILPQYSSNYTSQ 218
Score = 29.7 bits (67), Expect = 0.12
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 18/66 (27%)
Query: 2 AEEEQEEVYVIEKIVDKKLTK------------------EGKVKYFLKWKDYPESDNTWE 43
A + E+ + I+ +++ +L + ++ +KW D NTWE
Sbjct: 30 ANPQPEDFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWE 89
Query: 44 MAEDLD 49
E +
Sbjct: 90 TYESIG 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.010
Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 22/77 (28%)
Query: 23 EGKVKYFLKWKDYPES----DNTW--EMAE--DLDC------------DDLIRAFEENWA 62
+ +++ LK K Y N + +L C D L A +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH-- 288
Query: 63 VEQEAKKKAGEPTESLE 79
+ + P E
Sbjct: 289 ISLDHHSMTLTPDEVKS 305
Score = 27.9 bits (61), Expect = 0.54
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 24/77 (31%)
Query: 6 QEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESD------------------------NT 41
++ LT + LK+ D D T
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 42 WEMAEDLDCDDLIRAFE 58
W+ + ++CD L E
Sbjct: 344 WDNWKHVNCDKLTTIIE 360
Score = 25.2 bits (54), Expect = 4.6
Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 42 WEMAE-DLDCDDLIRAFEENWAVEQEAKKKAGEPTESLETGVSDEERRKVGKYKERTN 98
+E E D++ FE+ + + K + + ++ +S EE + K+ +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCK----DVQDMPKSILSKEEIDHIIMSKDAVS 62
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.13
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 13/74 (17%)
Query: 37 ESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAGEPT---ESLETG---------VSD 84
E+D +WE + F + + P+ +SLE +S+
Sbjct: 285 ETD-SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 85 EERRKVGKYKERTN 98
+ +V Y +TN
Sbjct: 344 LTQEQVQDYVNKTN 357
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded
ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae}
PDB: 2dy7_A 2dy8_A
Length = 177
Score = 26.5 bits (57), Expect = 1.3
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 1 MAEEEQEEVYVIEKIVDKKLTK----EGKVKYFLKWKDYPESDNTWEMAEDLDCD--DLI 54
+E EE +V E+I+D + +++Y +KW+ + TWE A D+ + +
Sbjct: 112 RRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQV 171
Query: 55 RAFEE 59
+ F++
Sbjct: 172 KHFQK 176
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase,
periplasm, beta-helix, glycosidase, EXO-activity; HET:
AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*
Length = 608
Score = 26.9 bits (59), Expect = 1.4
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 33 KDYPESDNTWEMAEDLDCDDLIRAFEENW 61
DYP + + LI A + N
Sbjct: 224 DDYPAGYRLYPYSTIERPASLINAIDPNN 252
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded
antiparallel beta sheet, alpha helix linker, peptide
binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2
b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Length = 187
Score = 26.5 bits (57), Expect = 1.6
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 23 EGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAFEE 59
G Y+ KW+ P S+ +WE + I +
Sbjct: 146 AGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFS 184
Score = 25.0 bits (53), Expect = 4.4
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 18 KKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKK 70
+K + G+++Y +KWK + NTWE E L ++ + + +++ + K
Sbjct: 50 EKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETK 102
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three
stranded antiparallel beta sheet, alpha helix linker,
peptide binding protein; 2.35A {Homo sapiens} SCOP:
b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Length = 115
Score = 25.8 bits (56), Expect = 1.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 23 EGKVKYFLKWKDYPESDNTWEMAEDL 48
G+++Y +KWK + NTWE E L
Sbjct: 55 PGEIQYLIKWKGWSHIHNTWETEETL 80
>3nfi_A DNA-directed RNA polymerase I subunit RPA49; winged helix,
transcription, DNA binding, DN protein; HET: MSE PE4;
1.90A {Saccharomyces cerevisiae} PDB: 3nfh_A
Length = 237
Score = 26.1 bits (57), Expect = 2.2
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 7 EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWE 43
E++Y IE I+ KK + +V LK D + +
Sbjct: 33 EQIYPIESIIPKKELQFIRVSSILKEADKEKKLELFP 69
>2bba_A Ephrin type-B receptor 4; EPHB4, tumorigenesis, angiogenesis,
peptide mimetics, signal protein, structural genomics,
PSI-2; 1.65A {Homo sapiens} SCOP: b.18.1.4 PDB: 2hle_A
Length = 185
Score = 25.1 bits (54), Expect = 4.1
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 30 LKWKDYPESDNTW-EMAEDLDCDDLIRAFE 58
LKW +P+ D W E++ + +R +E
Sbjct: 19 LKWVTFPQVDGQWEELSGLDEEQHSVRTYE 48
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A
{Bacillus subtilis}
Length = 212
Score = 24.5 bits (54), Expect = 7.2
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 11 VIEKIVDKKLTKEGKVKYFLK-WK 33
VI + LT +G ++ FL W
Sbjct: 189 VIHALTKHPLTDKG-IEQFLADWN 211
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics,
JOI for structural genomics, JCSG; HET: GOL; 2.40A
{Thermotoga maritima} SCOP: c.1.10.1
Length = 230
Score = 24.5 bits (54), Expect = 7.5
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 11 VIEKIVDKKLTKEGKVKYFLK-WKDYPES 38
V+EK+ +T G ++ F++ WK Y E+
Sbjct: 200 VLEKLFKHPMTDLG-IERFMEDWKKYLEN 227
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto
reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB:
1og6_A*
Length = 319
Score = 24.1 bits (53), Expect = 9.7
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 18 KKLTKEGKVKYF 29
K L + GKV++F
Sbjct: 165 KHLHQSGKVRHF 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.127 0.363
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,618,401
Number of extensions: 88001
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 65
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 51 (23.9 bits)