RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2752
(99 letters)
>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus
musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
Length = 73
Score = 54.4 bits (131), Expect = 4e-12
Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 3 EEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWA 62
EE+EE YV+EK++D+++ K GKV+Y LKWK + + DNTWE E+LDC DLI F ++
Sbjct: 7 LEEEEEEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 65
Query: 63 VEQEAKK 69
E K
Sbjct: 66 TAHETDK 72
>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 52
Score = 53.2 bits (128), Expect = 8e-12
Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 7 EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFE 58
E V+ E ++ ++ ++G+++Y +KWK + + +TWE E++ L+ AFE
Sbjct: 2 ERVFAAEALLKRR-IRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFE 52
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 53.6 bits (129), Expect = 8e-12
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 7 EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDL-DCDDLIRAFEENWAVEQ 65
EE+Y +E+IVDK+ K+GK +Y ++WK Y D+TWE + L +C++ I F +Q
Sbjct: 4 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQ 63
Query: 66 E 66
+
Sbjct: 64 K 64
>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 55
Score = 51.3 bits (123), Expect = 4e-11
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 7 EEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60
+ VY EKI+ K++ K G V+Y +KWK + + NTWE ++ LI +E+
Sbjct: 1 DLVYAAEKIIQKRVKK-GVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQT 53
>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 52
Score = 51.3 bits (123), Expect = 4e-11
Identities = 26/51 (50%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Query: 10 YVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60
Y +EKI+D++ ++G V+Y+LKWK YPE++NTWE +LDC DLI+ +E +
Sbjct: 2 YAVEKIIDRR-VRKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEAS 51
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 70
Score = 50.5 bits (121), Expect = 1e-10
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 3 EEEQEEVYVIEKIVDKKLTKEGKVKYFL-KWKDYPESDNTWEMAEDL-DCDDLIRAFEEN 60
++E Y +E+IVD+KL + G VK + +W +Y +TWE E+L C ++ ++
Sbjct: 2 SSPKQEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRR 61
Query: 61 WA 62
Sbjct: 62 KR 63
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 69
Score = 45.6 bits (108), Expect = 9e-09
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 4 EEQEEVYVIEKIVDKKLTK----EGKVKYFLKWKDYPESDNTWEMAEDL--DCDDLIRAF 57
+E EE +V E+I+D + +++Y +KW+ + TWE A D+ + ++ F
Sbjct: 1 DEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHF 60
Query: 58 EENWA 62
+
Sbjct: 61 QNREN 65
>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 43.7 bits (103), Expect = 8e-08
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 1 MAEEEQEEVYVIEKIVDKKLTKE--GKVKYFLKWKDYPESDNTWEMAEDLD--CDDLIRA 56
+ ++ ++ ++ +I+ K G Y+ KW+ P S+ +WE + I
Sbjct: 15 LTDDLHKQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDE 74
Query: 57 FEE 59
+
Sbjct: 75 YFS 77
>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 54
Score = 39.0 bits (91), Expect = 3e-06
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 11 VIEKIVDKKLT-KEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60
V E ++ K++ ++Y +KW D SD TWE +++D L+ +++
Sbjct: 2 VAESVIGKRVGDDGKTIEYLVKWTDM--SDATWEPQDNVDS-TLVLLYQQQ 49
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 81
Score = 35.2 bits (81), Expect = 1e-04
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 1 MAEEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEE 59
+ +E + + + D K ++ +KW D NTWE E + ++ +
Sbjct: 16 LKTSLEEGKVLEKTVPDLNNCK-ENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDN 73
>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 33.7 bits (77), Expect = 7e-04
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 21 TKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDL 53
+ G+++Y +KWK + NTWE E L ++
Sbjct: 41 KEPGEIQYLIKWKGWSHIHNTWETEETLKQQNV 73
>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite
reductase subunit beta, DsrB {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 179
Score = 25.0 bits (54), Expect = 1.8
Identities = 9/66 (13%), Positives = 21/66 (31%)
Query: 1 MAEEEQEEVYVIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEEN 60
V +++I++ K + ++W D + +E+ LI +
Sbjct: 105 EPPRWPTLVKYVKQILEAWAANANKHERLIEWVDRIGWERFFELTGLEFTQHLIDDYRIT 164
Query: 61 WAVEQE 66
E
Sbjct: 165 PYFYSE 170
>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 133
Score = 24.5 bits (53), Expect = 1.9
Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 22 KEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKKAGEPTESLETG 81
+EG+ ++++ + + + W +D + L AV++ ++K E E E
Sbjct: 41 QEGREEFYVHYVGFNRRLDEW-----VDKNRLALTKTVKDAVQKNSEKYLSELAEQPERK 95
Query: 82 VSDEERRK 89
++ ++RK
Sbjct: 96 ITRNQKRK 103
>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermotoga maritima [TaxId:
2336]}
Length = 218
Score = 24.7 bits (53), Expect = 1.9
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 11 VIEKIVDKKLTKEGKVKYFLK-WKDYPES 38
V+EK+ +T G ++ F++ WK Y E+
Sbjct: 190 VLEKLFKHPMTDLG-IERFMEDWKKYLEN 217
>d2bbaa1 b.18.1.4 (A:17-196) Ephrin type-B receptor 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 180
Score = 24.0 bits (52), Expect = 3.7
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 30 LKWKDYPESDNTWEMAEDLDCDD-LIRAFE 58
LKW +P+ D WE LD + +R +E
Sbjct: 14 LKWVTFPQVDGQWEELSGLDEEQHSVRTYE 43
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1,
MRG15 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 22.2 bits (47), Expect = 9.8
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 11 VIEKIVDKKLTKEGKVKYFLKWKDYPESDNTWEMAEDLDCDDLIRAFEENWAVEQEAKKK 70
+ E K K+ +VKYF+ + + ++ + W +++ + N ++E +K
Sbjct: 20 LYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWV-----PESRVLKYVDTNLQKQRELQKA 74
Query: 71 AGE 73
E
Sbjct: 75 NQE 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.306 0.127 0.363
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 400,623
Number of extensions: 17911
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 23
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 47 (22.2 bits)