BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2753
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S98|A Chain A, Human Ifnar1
Length = 306
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 121 HRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALS 180
H E + IV P + + + T S + + + E ++ + SRHK Y LS
Sbjct: 108 HLEAEDKAIVIHISPGTKDSVXWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLS 167
Query: 181 PRD--CLKT--ALFQKWQRMVAPP 200
P CLK AL W+ V P
Sbjct: 168 PETTYCLKVKAALLTSWKIGVYSP 191
>pdb|3SE3|A Chain A, Human Ifna2-Ifnar Ternary Complex
pdb|3SE4|A Chain A, Human Ifnw-Ifnar Ternary Complex
Length = 414
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 121 HRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALS 180
H E + IV P + + + T S + + + E ++ + SRHK Y LS
Sbjct: 112 HLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLS 171
Query: 181 PRD--CLKT--ALFQKWQRMVAPP 200
P CLK AL W+ V P
Sbjct: 172 PETTYCLKVKAALLTSWKIGVYSP 195
>pdb|3IYK|G Chain G, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|I Chain I, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|K Chain K, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
Length = 600
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 52 GITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPM--LTKVCTEGRLILEFTFDDLM 109
G+ + N+ H S HN + +D + +++H +P+ +K C R ++ ++ L+
Sbjct: 121 GLDDQSRNVAH---SLHNCVVKIDSKKADTMSYHVEPIEDASKGCLHTRTMM---WNHLV 174
Query: 110 RIKSWHFA 117
RI+++H A
Sbjct: 175 RIETFHAA 182
>pdb|4EAZ|A Chain A, Vgll1-Tead4 Structure
pdb|4EAZ|B Chain B, Vgll1-Tead4 Structure
Length = 223
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 91 TKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVG-------MQDPSMLEQLTK 143
TKVC+ G+ ++E + R ++ H+ R HR + ++ + + M+ + +
Sbjct: 121 TKVCSFGKQVVEKVETEYARYENGHYLYRIHRSPLCEYMINFIHKLKHLPEKYMMNSVLE 180
Query: 144 NIT-RQGITNSTLNYLRLCV 162
N T Q +TN LC+
Sbjct: 181 NFTILQVVTNRDTQETLLCI 200
>pdb|3JUA|A Chain A, Structural Basis Of Yap Recognition By Tead4 In The Hippo
Pathway
pdb|3JUA|C Chain C, Structural Basis Of Yap Recognition By Tead4 In The Hippo
Pathway
pdb|3JUA|E Chain E, Structural Basis Of Yap Recognition By Tead4 In The Hippo
Pathway
pdb|3JUA|G Chain G, Structural Basis Of Yap Recognition By Tead4 In The Hippo
Pathway
Length = 220
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 91 TKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVG-------MQDPSMLEQLTK 143
TKVC+ G+ ++E + R ++ H+ R HR + ++ + + M+ + +
Sbjct: 118 TKVCSFGKQVVEKVETEYARYENGHYLYRIHRSPLCEYMINFIHKLKHLPEKYMMNSVLE 177
Query: 144 NIT-RQGITNSTLNYLRLCV 162
N T Q +TN LC+
Sbjct: 178 NFTILQVVTNRDTQETLLCI 197
>pdb|2G3X|A Chain A, Crystal Structure Of Transthyretin Mutant I84s At Acidic
Ph
pdb|2G3X|B Chain B, Crystal Structure Of Transthyretin Mutant I84s At Acidic
Ph
pdb|2NOY|A Chain A, Crystal Structure Of Transthyretin Mutant I84s At Ph 7.5
pdb|2NOY|B Chain B, Crystal Structure Of Transthyretin Mutant I84s At Ph 7.5
Length = 127
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 6 WWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRS 47
+W A + F + A + T + GP+RYTI L P + +
Sbjct: 78 YWKALGSSPFHEHAEVVFT-ANDSGPRRYTIAALLSPYSYST 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,646,545
Number of Sequences: 62578
Number of extensions: 248573
Number of successful extensions: 816
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 814
Number of HSP's gapped (non-prelim): 9
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)