BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2753
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W676|LDB2_CHICK LIM domain-binding protein 2 OS=Gallus gallus GN=LDB2 PE=2 SV=1
Length = 371
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/252 (74%), Positives = 215/252 (85%), Gaps = 7/252 (2%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+RELVPR+I+ M QDP +LEQL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 165 YRELVPRSILPMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK----GSQSGGAANSAPPAPSKK 234
LSPRDCLKT LFQKWQRMVAPP + +++P KRRKRK + + A N+A SKK
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTNSKK 283
Query: 235 RSPGPNFSLASQ 246
+S N SL+SQ
Sbjct: 284 KSAAANLSLSSQ 295
>sp|O43679|LDB2_HUMAN LIM domain-binding protein 2 OS=Homo sapiens GN=LDB2 PE=1 SV=1
Length = 373
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 187/253 (73%), Positives = 216/253 (85%), Gaps = 7/253 (2%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+RELVPR+I+ M QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 165 YRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK----GSQSGGAANSAPPAPSKK 234
LSPRDCLKT LFQKWQRMVAPP + +++P KRRKRK + + A N+A SKK
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKK 283
Query: 235 RSPGPNFSLASQV 247
++ N SL+SQV
Sbjct: 284 KTTAANLSLSSQV 296
>sp|O55203|LDB2_MOUSE LIM domain-binding protein 2 OS=Mus musculus GN=Ldb2 PE=1 SV=2
Length = 373
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/253 (73%), Positives = 216/253 (85%), Gaps = 7/253 (2%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQC MVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+RELVPR+I+ M QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 165 YRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK----GSQSGGAANSAPPAPSKK 234
LSPRDCLKT LFQKWQRMVAPP + +++P KRRKRK + + A N+ A SKK
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNTTNSAGSKK 283
Query: 235 RSPGPNFSLASQV 247
++P + SLA+QV
Sbjct: 284 KTPAASLSLATQV 296
>sp|P70060|LDB1_XENLA LIM domain-binding protein 1 OS=Xenopus laevis GN=ldb1 PE=1 SV=2
Length = 375
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/252 (73%), Positives = 210/252 (83%), Gaps = 6/252 (2%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 48 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 107
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKESFHN ++LDCDQCTMVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 108 KHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 167
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 168 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 227
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK---GSQSGGAANSAPPAPSKKR 235
LSPRDCLKT LFQKWQRMVAPP + Q P+ KRRKRK GS + + SKK+
Sbjct: 228 LSPRDCLKTCLFQKWQRMVAPPAEPARQAPS-KRRKRKMSGGSTMSSGGGNTNNSNSKKK 286
Query: 236 SPGPNFSLASQV 247
SP F+L+SQV
Sbjct: 287 SPASTFALSSQV 298
>sp|O42252|LDB1_CHICK LIM domain-binding protein 1 OS=Gallus gallus GN=LDB1 PE=2 SV=1
Length = 411
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/252 (73%), Positives = 211/252 (83%), Gaps = 6/252 (2%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 84 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 143
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKESFHN ++LDCDQCTMVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 144 KHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 203
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 204 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 263
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK---GSQSGGAANSAPPAPSKKR 235
LSPRDCLKT LFQKWQRMVAPP + Q+P+ KRRKRK GS + + SKK+
Sbjct: 264 LSPRDCLKTCLFQKWQRMVAPPAEPARQQPS-KRRKRKMSGGSTMSSGGGNTNNSNSKKK 322
Query: 236 SPGPNFSLASQV 247
SP F+L+SQV
Sbjct: 323 SPASTFALSSQV 334
>sp|Q6NVL6|LDB1_XENTR LIM domain-binding protein 1 OS=Xenopus tropicalis GN=ldb1 PE=2
SV=1
Length = 373
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/251 (74%), Positives = 209/251 (83%), Gaps = 6/251 (2%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 48 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 107
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKESFHN ++LDCDQCTMVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 108 KHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 167
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 168 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 227
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK---GSQSGGAANSAPPAPSKKR 235
LSPRDCLKT LFQKWQRMVAPP + Q P NKRRKRK GS + + SKK+
Sbjct: 228 LSPRDCLKTCLFQKWQRMVAPPAEPARQAP-NKRRKRKMSGGSTMSSGGGNTNNSNSKKK 286
Query: 236 SPGPNFSLASQ 246
SP F+L+SQ
Sbjct: 287 SPASTFALSSQ 297
>sp|Q1EQW7|LDB2_XENLA LIM domain-binding protein 2 OS=Xenopus laevis GN=ldb2 PE=2 SV=1
Length = 398
Score = 380 bits (976), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/253 (72%), Positives = 216/253 (85%), Gaps = 7/253 (2%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+REL+PR+I+ M QDP +LEQL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 165 YRELLPRSILAMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK----GSQSGGAANSAPPAPSKK 234
LSPRDCLKT LFQKWQRMVAPP + +++ KRRKRK + + A N+A A ++K
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQTTTKRRKRKNSTNNASNSNAGNNATSAYNRK 283
Query: 235 RSPGPNFSLASQV 247
+ P + +L++QV
Sbjct: 284 KVPAASLNLSNQV 296
>sp|P70662|LDB1_MOUSE LIM domain-binding protein 1 OS=Mus musculus GN=Ldb1 PE=1 SV=2
Length = 411
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/252 (72%), Positives = 210/252 (83%), Gaps = 6/252 (2%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 84 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 143
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKE+FH+ ++LDCDQ +MVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 144 KHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 203
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 204 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 263
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK---GSQSGGAANSAPPAPSKKR 235
LSPRDCLKT LFQKWQRMVAPP + Q+P+ KRRKRK GS + + SKK+
Sbjct: 264 LSPRDCLKTCLFQKWQRMVAPPAEPARQQPS-KRRKRKMSGGSTMSSGGGNTNNSNSKKK 322
Query: 236 SPGPNFSLASQV 247
SP F+L+SQV
Sbjct: 323 SPASTFALSSQV 334
>sp|Q86U70|LDB1_HUMAN LIM domain-binding protein 1 OS=Homo sapiens GN=LDB1 PE=1 SV=2
Length = 411
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/252 (72%), Positives = 210/252 (83%), Gaps = 6/252 (2%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 84 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 143
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKE+FH+ ++LDCDQ +MVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 144 KHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 203
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 204 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 263
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK---GSQSGGAANSAPPAPSKKR 235
LSPRDCLKT LFQKWQRMVAPP + Q+P+ KRRKRK GS + + SKK+
Sbjct: 264 LSPRDCLKTCLFQKWQRMVAPPAEPTRQQPS-KRRKRKMSGGSTMSSGGGNTNNSNSKKK 322
Query: 236 SPGPNFSLASQV 247
SP F+L+SQV
Sbjct: 323 SPASTFALSSQV 334
>sp|O73715|LDB1A_DANRE LIM domain-binding protein 1-A OS=Danio rerio GN=ldb1a PE=2 SV=1
Length = 374
Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust.
Identities = 172/218 (78%), Positives = 193/218 (88%), Gaps = 3/218 (1%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+ DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TEL+Y L
Sbjct: 49 DCDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELFYVL 108
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKESFHN ++LDCDQCTMVT +GKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 109 KHPKESFHNNFVSLDCDQCTMVTQNGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 168
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HRE+VPR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 169 HREVVPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 228
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK 216
LSPRDCLKT LFQKWQRMVAPP + Q P NKRRKRK
Sbjct: 229 LSPRDCLKTCLFQKWQRMVAPPAEPARQAP-NKRRKRK 265
>sp|Q8W234|SEUSS_ARATH Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU
PE=1 SV=1
Length = 877
Score = 41.2 bits (95), Expect = 0.008, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 10/94 (10%)
Query: 40 LIPRYFRSIFDGGITELYYNLKHPKESFHNT-SITLDCDQCTM--VTHHGKPMLTKVCTE 96
++PR F+ ++ G E + P+ES +++ I L+ + T V H +V +
Sbjct: 384 VLPRLFKIKYESGTLEELLYVDMPRESQNSSGQIVLEYAKATQESVFEH-----LRVVRD 438
Query: 97 GRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIV 130
G+L + F+ D ++I SW F R+H EL+PR ++
Sbjct: 439 GQLRIVFSPD--LKIFSWEFCARRHEELIPRRLL 470
>sp|Q15561|TEAD4_HUMAN Transcriptional enhancer factor TEF-3 OS=Homo sapiens GN=TEAD4 PE=1
SV=3
Length = 434
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 54 TELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKS 113
+L N++ SF+ S + + ++T TKVC+ G+ ++E + R ++
Sbjct: 300 ADLNTNIEDEGSSFYGVSSQYESPENMIIT-----CSTKVCSFGKQVVEKVETEYARYEN 354
Query: 114 WHFAVRQHRELVPRTIVG-------MQDPSMLEQLTKNIT-RQGITNSTLNYLRLCV 162
H++ R HR + ++ + + M+ + +N T Q +TN LC+
Sbjct: 355 GHYSYRIHRSPLCEYMINFIHKLKHLPEKYMMNSVLENFTILQVVTNRDTQETLLCI 411
>sp|P48984|TEAD4_CHICK Transcriptional enhancer factor TEF-3 OS=Gallus gallus GN=TEAD4
PE=2 SV=1
Length = 438
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 54 TELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKS 113
+L N++ SF+ S + + ++T TKVC+ G+ ++E + ++
Sbjct: 304 ADLNTNIEDESRSFYGVSSQYESPENMVIT-----CSTKVCSFGKQVVEKVETEYAHYEN 358
Query: 114 WHFAVRQHRELVPRTIVG-------MQDPSMLEQLTKNIT-RQGITNSTLNYLRLCV 162
H+A R HR + ++ + + M+ + +N T Q +TN LC+
Sbjct: 359 GHYAYRIHRSPLCEYMINFIHKLKHLPEKYMMNSVLENFTILQVVTNRDTQETLLCI 415
>sp|Q4V8I2|CNDH2_RAT Condensin-2 complex subunit H2 OS=Rattus norvegicus GN=Ncaph2 PE=2
SV=1
Length = 554
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 178 ALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGS 218
+L P D L + LFQK + PPG E+ ++RKRKG+
Sbjct: 258 SLDPFDSLDSKLFQKGKPYSVPPGVEEA---PGQKRKRKGA 295
>sp|C3PKD9|Y2449_CORA7 UPF0371 protein cauri_2449 OS=Corynebacterium aurimucosum (strain
ATCC 700975 / DSM 44827 / CN-1) GN=cauri_2449 PE=3 SV=1
Length = 498
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 136 SMLEQLTKNITRQGITNSTLNYLRLCVILEPM------QELMSRH-KAYALSPRDCLKTA 188
S+LE+LT + Q T+ +N + C+ + + QE++ R+ K R+ L T
Sbjct: 266 SLLERLTGTVPYQSPTDMGVNMVGFCITDDEVCREASQQEIIRRYFKTLVEEARNGLDTT 325
Query: 189 LFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGGAA 224
++ ++A G + + RP ++K ++ G A
Sbjct: 326 QSERAAVVMAKAGIKSTDRPVVLPARQKAEETQGPA 361
>sp|Q8BSP2|CNDH2_MOUSE Condensin-2 complex subunit H2 OS=Mus musculus GN=Ncaph2 PE=1 SV=1
Length = 607
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 178 ALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGS 218
+L P D L++ +FQK + PPG E+ ++RKRKG+
Sbjct: 311 SLDPFDSLESKVFQKGKPYSVPPGVEEA---PGQKRKRKGA 348
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,994,737
Number of Sequences: 539616
Number of extensions: 3765027
Number of successful extensions: 12819
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 12682
Number of HSP's gapped (non-prelim): 115
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)