Query psy2753
Match_columns 247
No_of_seqs 114 out of 132
Neff 5.0
Searched_HMMs 46136
Date Sat Aug 17 00:20:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2181|consensus 100.0 6E-86 1.3E-90 603.5 17.7 247 1-247 67-320 (415)
2 PF01803 LIM_bind: LIM-domain 100.0 1.4E-56 3E-61 398.0 18.3 182 1-186 18-239 (240)
3 PLN02543 pfkB-type carbohydrat 61.5 5.7 0.00012 39.8 2.3 26 202-227 60-85 (496)
4 PRK12442 translation initiatio 43.7 41 0.00089 26.4 4.0 46 65-119 15-63 (87)
5 PF09868 DUF2095: Uncharacteri 39.1 32 0.0007 28.6 2.9 45 148-192 61-108 (128)
6 KOG3967|consensus 36.1 42 0.00092 31.1 3.5 80 14-98 20-117 (297)
7 COG0361 InfA Translation initi 35.8 49 0.0011 25.3 3.3 45 65-118 15-62 (75)
8 PF06249 EutQ: Ethanolamine ut 31.8 39 0.00085 28.9 2.4 35 67-104 77-111 (152)
9 PF11113 Phage_head_chap: Head 29.4 1E+02 0.0022 22.4 3.9 28 72-104 7-34 (56)
10 PF01803 LIM_bind: LIM-domain 26.8 92 0.002 27.7 4.1 39 57-103 92-130 (240)
11 COG4003 Uncharacterized protei 25.5 82 0.0018 25.0 3.0 51 145-195 28-81 (98)
12 TIGR00008 infA translation ini 24.5 83 0.0018 23.5 2.8 46 65-119 13-61 (68)
13 PF05311 Baculo_PP31: Baculovi 22.6 1.1E+02 0.0025 28.6 3.9 11 233-243 249-259 (271)
14 PF07202 Tcp10_C: T-complex pr 22.4 2.1E+02 0.0045 25.1 5.3 37 67-103 89-125 (179)
15 PF07202 Tcp10_C: T-complex pr 20.5 2.6E+02 0.0057 24.4 5.6 84 13-103 50-142 (179)
No 1
>KOG2181|consensus
Probab=100.00 E-value=6e-86 Score=603.50 Aligned_cols=247 Identities=70% Similarity=1.174 Sum_probs=238.7
Q ss_pred CcchHHHHHHHHhhcCCCCceEEEeecCCCCeeeeecccchhhHHHHhhcccceeeeeeccCCcccccCcceEEEcCCcE
Q psy2753 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCT 80 (247)
Q Consensus 1 ~~di~yW~~FV~eFFsp~a~lr~~~~~~~~~K~FEI~~~~LPRyF~t~F~sGV~~~~~~L~~p~e~l~ng~i~~e~~~a~ 80 (247)
++|..|||+|.+|||+|||+|+++||.|+|+|+|.|++++|||||+++||+||+++||+|++|+|+|+||.+.+||++|+
T Consensus 67 ~sdN~WWDaFstEFFeDDa~Lt~~fclEdgpkRYtIgRtlIPrfFrsIfegG~~eLyyvLkh~ket~hn~s~~~dcdq~~ 146 (415)
T KOG2181|consen 67 VSDNQWWDAFSTEFFEDDAKLTFVFCLEDGPKRYTIGRTLIPRFFRSIFEGGMRELYYVLKHPKETLHNGSQAYDCDQVL 146 (415)
T ss_pred cchhhhHHhhhhhhhcCCceEEEEEEecCCcceeeeccchhHHHHHHHHhcchhhhhhhhcCchhhhcCCceeeecccee
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcceEEeeeceEEEEEecCccceeeEEEEeecceeeeeecccccC---CCchhhHhhccCCCCCCCChhhhhh
Q psy2753 81 MVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM---QDPSMLEQLTKNITRQGITNSTLNY 157 (247)
Q Consensus 81 ~v~~y~~~~~~~V~~eG~Lr~~F~~d~~lKIe~weF~~~~heE~IpR~~i~~---QsP~~~kql~k~V~~~Gv~~~~~r~ 157 (247)
+|+.|++|++++||+||+|.++|.+||.|||++|+|++++|+|+|||++|++ .+|++++|+.|||+++|++++|+||
T Consensus 147 ~iTqhgkp~ft~VctegrL~lEF~fDd~MRIK~Wh~~ik~~rElvprsil~~~a~~dp~~ldq~~kNitR~G~~nsTlNy 226 (415)
T KOG2181|consen 147 QITQHGKPSFTEVCTEGRLYLEFAFDDVMRIKAWHLEIKRSRELVPRSILQNTADYDPEALDQEQKNITRMGFFNSTLNY 226 (415)
T ss_pred EEeecCCccceeeeccceEEEEeehhhhhhhhheeeeeeccccccchhhhhccCCCChhhhChhhccccccccchhhHHH
Confidence 9999999999999999999999999999999999999999999999999975 4999999999999999999999999
Q ss_pred hhHHHHhhchHHHHHhhhcCCCCHHHHHHHHHhhhhhhccCCCCCCCCCCCchhhhcccCCCCC----CCCCCCCCCCCC
Q psy2753 158 LRLCVILEPMQELMSRHKAYALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGSQSG----GAANSAPPAPSK 233 (247)
Q Consensus 158 LeI~Eil~~Mq~Lm~f~k~~~l~P~eaLk~~lfq~~q~~~~p~~~~~~~~p~~k~~~~~~~~~~----~~~~~~~~~~~~ 233 (247)
|++|+||++||+||+.||.+.|+|+||||+||||||||||+||+||+++||++||||||+++++ +++|+++++++|
T Consensus 227 lrlcvILePMQelMSrhKayalsPRdclKttLFQkwQrMvaPp~ep~~qkp~~KRrkrk~a~~~~~~~~a~nna~~~n~k 306 (415)
T KOG2181|consen 227 LRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPPEPEKQKPARKRRKRKAAAAAAAAAAAANNASPANNK 306 (415)
T ss_pred HHHHHHHhHHHHHHHhccccCCCHHHHHHHHHHHHhhhhhcCCCCCCCCCCchhhhhcccccccccccccCCCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999976643 456677888999
Q ss_pred CCCCCCCCCcccCC
Q psy2753 234 KRSPGPNFSLASQV 247 (247)
Q Consensus 234 ~~~~~~~~~~~~~~ 247 (247)
|++|++.+||+|||
T Consensus 307 ~~p~~p~~slssQ~ 320 (415)
T KOG2181|consen 307 QFPPNPMTSLSSQM 320 (415)
T ss_pred cCCCCcchhhhhcC
Confidence 99999999999996
No 2
>PF01803 LIM_bind: LIM-domain binding protein; InterPro: IPR002691 The LIM-domain binding protein, binds to the LIM domain IPR001781 from INTERPRO of LIM homeodomain proteins which are transcriptional regulators of development. Nuclear LIM interactor (NLI) / LIM domain-binding protein 1 (LDB1) P70662 from SWISSPROT is located in the nuclei of neuronal cells during development, it is co-expressed with Isl1 in early motor neuron differentiation and has a suggested role in the Isl1 dependent development of motor neurons []. It is suggested that these proteins act synergistically to enhance transcriptional efficiency by acting as co-factors for LIM homeodomain and Otx class transcription factors both of which have essential roles in development []. The Drosophila melanogaster protein Chip O18353 from SWISSPROT is required for segmentation and activity of a remote wing margin enhancer []. Chip is a ubiquitous chromosomal factor required for normal expression of diverse genes at many stages of development []. It is suggested that Chip cooperates with different LIM domain proteins and other factors to structurally support remote enhancer-promoter interactions [].; GO: 0003712 transcription cofactor activity, 0005634 nucleus
Probab=100.00 E-value=1.4e-56 Score=397.99 Aligned_cols=182 Identities=33% Similarity=0.645 Sum_probs=167.1
Q ss_pred CcchHHHHHHHHhhcCCCCceEEEeecCCCC---eeeeecccchhhHHHHhhcccceeeeeeccCCccc-ccCcceEEEc
Q psy2753 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGP---KRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKES-FHNTSITLDC 76 (247)
Q Consensus 1 ~~di~yW~~FV~eFFsp~a~lr~~~~~~~~~---K~FEI~~~~LPRyF~t~F~sGV~~~~~~L~~p~e~-l~ng~i~~e~ 76 (247)
++|++||++||+|||+|+|+|||+++.+++. |+|||++++|||||+++|++||++|+++|++++|. ++||.+++||
T Consensus 18 ~~~~~yW~~fv~~fF~~~a~lr~~~~~~~~~~~~k~FEi~~~~lPR~f~~~~~sGv~~~~~~l~~~~e~~l~ng~i~ie~ 97 (240)
T PF01803_consen 18 LNDIEYWQKFVHEFFSPDAVLRISLWNEDGNGSPKQFEITRPLLPRYFRTLFESGVKRMQLVLDGPREQVLPNGSIFIEC 97 (240)
T ss_pred CCcHHHHHHHHHHHcCCCeeEEEEEEcCCCCCCCeeEEEchHHHHHHHHHHhcCCceEEEEEecCCceEEcCCCeEEEEE
Confidence 4899999999999999999999999877765 99999999999999999999999999999999999 8999999999
Q ss_pred CCcEEEEEecCCcceEEeeeceEEEEEecCccceeeEEEEeecceeeeeecccccC--------------------CCch
Q psy2753 77 DQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--------------------QDPS 136 (247)
Q Consensus 77 ~~a~~v~~y~~~~~~~V~~eG~Lr~~F~~d~~lKIe~weF~~~~heE~IpR~~i~~--------------------QsP~ 136 (247)
++|+++++|.+| .+|+.+|+||++|+. ++|||+|||++++|+|||||+++.. ++|+
T Consensus 98 ~~~~~~~~y~~g--s~v~~~G~lr~~f~~--~lKIe~~df~~~~~~e~I~r~~l~~~~~~~~~~~~~~~~~~~~~k~~~~ 173 (240)
T PF01803_consen 98 PRATFIYWYEDG--SQVVHEGQLRAQFDP--DLKIEWWDFCTRSHEEYIPRSALEQQASNLHPSVQIFQKLSPDQKQSPD 173 (240)
T ss_pred CCEEEEEEECCc--eEEEEEeEEEEEECc--cccEEEEEEEeecccccCcHHHHHHhhccchhhhHHhhhcccccccccc
Confidence 999999999985 599999999999987 9999999999999999999998832 3455
Q ss_pred hhHhh--c-------------cCCCCCCCChhhhhhhhHHHHhhchHHHHHhhhcCC-CCHHHHHH
Q psy2753 137 MLEQL--T-------------KNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA-LSPRDCLK 186 (247)
Q Consensus 137 ~~kql--~-------------k~V~~~Gv~~~~~r~LeI~Eil~~Mq~Lm~f~k~~~-l~P~eaLk 186 (247)
+.++. + ++|+++|+|+++||||||||||++|++||.|++.++ +||+|||+
T Consensus 174 ~~~~~~~~~~~~~~~~~~Lp~~~v~~~Gi~~~~mr~Lqi~evms~M~~Lm~fs~~~~~~sP~eaL~ 239 (240)
T PF01803_consen 174 MSKNSKARQQKSPQLPPSLPSSNVNEFGIPERVMRCLQIAEVMSQMKDLMSFSKQNNILSPLEALE 239 (240)
T ss_pred hhhhhhhhhhcccccCCCcccCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHhc
Confidence 54442 2 579999999999999999999999999999977765 99999997
No 3
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=61.53 E-value=5.7 Score=39.75 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=18.4
Q ss_pred CCCCCCCchhhhcccCCCCCCCCCCC
Q psy2753 202 KRESQRPANKRRKRKGSQSGGAANSA 227 (247)
Q Consensus 202 ~~~~~~p~~k~~~~~~~~~~~~~~~~ 227 (247)
-|++++|.|++||||-+++....+.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (496)
T PLN02543 60 VPESPKPSRRGRKKKPTSSPPKAKTT 85 (496)
T ss_pred CCCCCCccccccccCCCCCCCccccc
Confidence 34788999988888887765444433
No 4
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=43.69 E-value=41 Score=26.43 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=34.7
Q ss_pred ccccCcceEEEcCCcEEEEEecCCcceEEeeeceEEEEEe---cCccceeeEEEEeec
Q psy2753 65 ESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFT---FDDLMRIKSWHFAVR 119 (247)
Q Consensus 65 e~l~ng~i~~e~~~a~~v~~y~~~~~~~V~~eG~Lr~~F~---~d~~lKIe~weF~~~ 119 (247)
|.|+|+..-+.|++-+.+.-|.. |++|.++- +.|-.++|.|.|+.+
T Consensus 15 e~Lp~~~frV~LenG~~vla~is---------GKmR~~rIrIl~GD~V~VE~spYDlt 63 (87)
T PRK12442 15 EVLPDSRFRVTLENGVEVGAYAS---------GRMRKHRIRILAGDRVTLELSPYDLT 63 (87)
T ss_pred EECCCCEEEEEeCCCCEEEEEec---------cceeeeeEEecCCCEEEEEECcccCC
Confidence 44788888889887776666554 99998665 556779999988865
No 5
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.13 E-value=32 Score=28.64 Aligned_cols=45 Identities=27% Similarity=0.521 Sum_probs=38.8
Q ss_pred CCCChhhhhhhhHHHHhhchHHHHHh-hhcCCCCHHHH--HHHHHhhh
Q psy2753 148 QGITNSTLNYLRLCVILEPMQELMSR-HKAYALSPRDC--LKTALFQK 192 (247)
Q Consensus 148 ~Gv~~~~~r~LeI~Eil~~Mq~Lm~f-~k~~~l~P~ea--Lk~~lfq~ 192 (247)
-|..+.|+.||+.|++.+.--++++| -++--|++..| |+..|-.+
T Consensus 61 sGy~PtViD~lrRC~T~EEALEVInylek~GEIt~e~A~eLr~~L~~k 108 (128)
T PF09868_consen 61 SGYNPTVIDYLRRCKTDEEALEVINYLEKRGEITPEEAKELRSILVKK 108 (128)
T ss_pred cCCCChHHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 49999999999999999999999999 88889999887 55665444
No 6
>KOG3967|consensus
Probab=36.09 E-value=42 Score=31.12 Aligned_cols=80 Identities=24% Similarity=0.370 Sum_probs=54.3
Q ss_pred hcCCCCceEEE-------eec----CCCCeeeeecccchhhHHHHhh--cccceeeeeeccCCcccccCcceEEEcC---
Q psy2753 14 FFEDDATLTLT-------FCL----EDGPKRYTIGRTLIPRYFRSIF--DGGITELYYNLKHPKESFHNTSITLDCD--- 77 (247)
Q Consensus 14 FFsp~a~lr~~-------~~~----~~~~K~FEI~~~~LPRyF~t~F--~sGV~~~~~~L~~p~e~l~ng~i~~e~~--- 77 (247)
+|+..|+||+. |+- .+..|+||.--.+|+.|-+-.. ++|++..++-++.. |+-+.++|+.-.+
T Consensus 20 aFdekGvLr~iktgePF~fn~~eD~~enqk~ye~Lge~i~~~VYeLLEk~c~Lkr~~ip~d~~-e~E~~SFiF~s~~~lt 98 (297)
T KOG3967|consen 20 AFDEKGVLRHIKTGEPFVFNYREDLHENQKRYEALGEIITKYVYELLEKDCNLKRVSIPVDAT-ESEPKSFIFMSEDALT 98 (297)
T ss_pred eecCcceeeeccCCCCeEEecHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCceeEeecCCCC-CCCCcceEEEChhHhc
Confidence 69999999994 331 1255999999999999988776 47789999988874 3333344665444
Q ss_pred --CcEEEEEecCCcceEEeeece
Q psy2753 78 --QCTMVTHHGKPMLTKVCTEGR 98 (247)
Q Consensus 78 --~a~~v~~y~~~~~~~V~~eG~ 98 (247)
+-.+|..|+. -|++.|+
T Consensus 99 ~~~kLlVLIHGS----GvVrAGQ 117 (297)
T KOG3967|consen 99 NPQKLLVLIHGS----GVVRAGQ 117 (297)
T ss_pred CccceEEEEecC----ceEecch
Confidence 3345666654 2455553
No 7
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=35.80 E-value=49 Score=25.28 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=34.9
Q ss_pred ccccCcceEEEcCCcEEEEEecCCcceEEeeeceEEEEEe---cCccceeeEEEEee
Q psy2753 65 ESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFT---FDDLMRIKSWHFAV 118 (247)
Q Consensus 65 e~l~ng~i~~e~~~a~~v~~y~~~~~~~V~~eG~Lr~~F~---~d~~lKIe~weF~~ 118 (247)
|-|+|+...+.|++-+.+.-|.- |++|-+.. +.|.-.++.|+|..
T Consensus 15 e~L~~~~f~v~~edg~~~~ahI~---------GKmr~~~i~I~~GD~V~Ve~~~~d~ 62 (75)
T COG0361 15 EMLPNGRFRVELENGHERLAHIS---------GKMRKNRIRILPGDVVLVELSPYDL 62 (75)
T ss_pred EecCCCEEEEEecCCcEEEEEcc---------CcchheeEEeCCCCEEEEEeccccc
Confidence 34789999999999888877654 87777543 66778899999873
No 8
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=31.75 E-value=39 Score=28.95 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=28.7
Q ss_pred ccCcceEEEcCCcEEEEEecCCcceEEeeeceEEEEEe
Q psy2753 67 FHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFT 104 (247)
Q Consensus 67 l~ng~i~~e~~~a~~v~~y~~~~~~~V~~eG~Lr~~F~ 104 (247)
+..|++.|+.....+...|+. ..++.||+|.+..+
T Consensus 77 l~~Gf~~le~~~f~wtl~YDE---i~~VlEG~L~i~~~ 111 (152)
T PF06249_consen 77 LSAGFMELEKTSFPWTLTYDE---IKYVLEGTLEISID 111 (152)
T ss_dssp SEEEEEEEEEEEEEEE-SSEE---EEEEEEEEEEEEET
T ss_pred eeeEEEEEeCCCccEEeecce---EEEEEEeEEEEEEC
Confidence 667889999988888888875 88999999998754
No 9
>PF11113 Phage_head_chap: Head assembly gene product; InterPro: IPR021049 This head assembly protein is also refereed to as gene product 40 (Gp40). A specific gp20-gp40 membrane insertion structure constitutes the T4 prohead assembly initiation complex [].
Probab=29.40 E-value=1e+02 Score=22.35 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=19.5
Q ss_pred eEEEcCCcEEEEEecCCcceEEeeeceEEEEEe
Q psy2753 72 ITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFT 104 (247)
Q Consensus 72 i~~e~~~a~~v~~y~~~~~~~V~~eG~Lr~~F~ 104 (247)
|.++....++|+.|+ ++.. +|+|.+.|+
T Consensus 7 I~l~dG~~hiVYi~~----~~~~-~G~l~vdfs 34 (56)
T PF11113_consen 7 ITLEDGESHIVYITE----LHYD-DGKLKVDFS 34 (56)
T ss_pred EEcCCCCEEEEEEEE----EEEc-CCeEEEEEe
Confidence 556667777776654 3333 799999997
No 10
>PF01803 LIM_bind: LIM-domain binding protein; InterPro: IPR002691 The LIM-domain binding protein, binds to the LIM domain IPR001781 from INTERPRO of LIM homeodomain proteins which are transcriptional regulators of development. Nuclear LIM interactor (NLI) / LIM domain-binding protein 1 (LDB1) P70662 from SWISSPROT is located in the nuclei of neuronal cells during development, it is co-expressed with Isl1 in early motor neuron differentiation and has a suggested role in the Isl1 dependent development of motor neurons []. It is suggested that these proteins act synergistically to enhance transcriptional efficiency by acting as co-factors for LIM homeodomain and Otx class transcription factors both of which have essential roles in development []. The Drosophila melanogaster protein Chip O18353 from SWISSPROT is required for segmentation and activity of a remote wing margin enhancer []. Chip is a ubiquitous chromosomal factor required for normal expression of diverse genes at many stages of development []. It is suggested that Chip cooperates with different LIM domain proteins and other factors to structurally support remote enhancer-promoter interactions [].; GO: 0003712 transcription cofactor activity, 0005634 nucleus
Probab=26.84 E-value=92 Score=27.70 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=32.3
Q ss_pred eeeccCCcccccCcceEEEcCCcEEEEEecCCcceEEeeeceEEEEE
Q psy2753 57 YYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEF 103 (247)
Q Consensus 57 ~~~L~~p~e~l~ng~i~~e~~~a~~v~~y~~~~~~~V~~eG~Lr~~F 103 (247)
.++++.++..+ +|++.++++++.. + .+++..+..|+++.
T Consensus 92 ~i~ie~~~~~~----~~~y~~gs~v~~~-G---~lr~~f~~~lKIe~ 130 (240)
T PF01803_consen 92 SIFIECPRATF----IYWYEDGSQVVHE-G---QLRAQFDPDLKIEW 130 (240)
T ss_pred eEEEEECCEEE----EEEECCceEEEEE-e---EEEEEECccccEEE
Confidence 67889999999 9999999976654 3 48999999999864
No 11
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.50 E-value=82 Score=24.95 Aligned_cols=51 Identities=25% Similarity=0.409 Sum_probs=41.4
Q ss_pred CCCCCCChhhhhhhhHHHHhhchHHHHHh-hhcCCCCHHH--HHHHHHhhhhhh
Q psy2753 145 ITRQGITNSTLNYLRLCVILEPMQELMSR-HKAYALSPRD--CLKTALFQKWQR 195 (247)
Q Consensus 145 V~~~Gv~~~~~r~LeI~Eil~~Mq~Lm~f-~k~~~l~P~e--aLk~~lfq~~q~ 195 (247)
+.=-|..+.|..||+.|++.+---++++| .|.-.|+|-- +|++.+-+|=-|
T Consensus 28 ~~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrGEi~~E~A~~L~~~~~~kgvr 81 (98)
T COG4003 28 IDFSGYNPTVIDFLRRCDTEEEALEIINYLEKRGEITPEMAKALRVTLVHKGVR 81 (98)
T ss_pred CCcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHhhHHHHHHH
Confidence 33449999999999999999999999999 8888888854 577777766433
No 12
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=24.52 E-value=83 Score=23.48 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=32.1
Q ss_pred ccccCcceEEEcCCcEEEEEecCCcceEEeeeceEEEEEe---cCccceeeEEEEeec
Q psy2753 65 ESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFT---FDDLMRIKSWHFAVR 119 (247)
Q Consensus 65 e~l~ng~i~~e~~~a~~v~~y~~~~~~~V~~eG~Lr~~F~---~d~~lKIe~weF~~~ 119 (247)
|.|+|+..-+.|++-+.+.-|.. |+||.... ..|..+++.|.|+.+
T Consensus 13 e~L~~~~f~V~l~ng~~vla~i~---------GKmr~~rI~I~~GD~V~Ve~spyd~t 61 (68)
T TIGR00008 13 ESLPNAMFRVELENGHEVLAHIS---------GKIRMHYIRILPGDKVKVELSPYDLT 61 (68)
T ss_pred EECCCCEEEEEECCCCEEEEEec---------CcchhccEEECCCCEEEEEECcccCC
Confidence 44788888888887666655543 98886443 555678888888654
No 13
>PF05311 Baculo_PP31: Baculovirus 33KDa late protein (PP31); InterPro: IPR007975 Autographa californica nuclear polyhedrosis virus (AcMNPV) p31 is a nuclear phosphoprotein that accumulates in the virogenic stroma, which is the viral replication centre in the infected-cell nucleus. The protein binds to DNA, and serves as a late expression factor [].
Probab=22.64 E-value=1.1e+02 Score=28.60 Aligned_cols=11 Identities=55% Similarity=1.132 Sum_probs=5.7
Q ss_pred CCCCCCCCCCc
Q psy2753 233 KKRSPGPNFSL 243 (247)
Q Consensus 233 ~~~~~~~~~~~ 243 (247)
.++.+.+.+..
T Consensus 249 ~~~~~~~~~~M 259 (271)
T PF05311_consen 249 QKRSPPPEFTM 259 (271)
T ss_pred cccCCCCCcee
Confidence 34555555543
No 14
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=22.37 E-value=2.1e+02 Score=25.08 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=16.0
Q ss_pred ccCcceEEEcCCcEEEEEecCCcceEEeeeceEEEEE
Q psy2753 67 FHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEF 103 (247)
Q Consensus 67 l~ng~i~~e~~~a~~v~~y~~~~~~~V~~eG~Lr~~F 103 (247)
||+|.+......-.-++.|.++....+..+|.-++.|
T Consensus 89 fPDGt~k~~~~dG~e~~~fpDGT~~~~~~nG~k~i~~ 125 (179)
T PF07202_consen 89 FPDGTIKYIHPDGREETVFPDGTIVTIDPNGDKTITF 125 (179)
T ss_pred eCCCcEEEEeCCCcEEEECCCceEEEEeCCCcEEEEe
Confidence 3444433333322334444444444444555555544
No 15
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=20.52 E-value=2.6e+02 Score=24.43 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=42.4
Q ss_pred hhcCCCCceEEEeecCCCCeeeeecccchhhHHHHhhcccceeeee--------eccCCccc-ccCcceEEEcCCcEEEE
Q psy2753 13 EFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYY--------NLKHPKES-FHNTSITLDCDQCTMVT 83 (247)
Q Consensus 13 eFFsp~a~lr~~~~~~~~~K~FEI~~~~LPRyF~t~F~sGV~~~~~--------~L~~p~e~-l~ng~i~~e~~~a~~v~ 83 (247)
-||++.++...++- +|..-|+.+---+ ..+|-.|.+++.+ ..++-.|. |++|.+.....+-..+.
T Consensus 50 Y~ya~~~T~~tt~p--dG~ev~~FpngQ~----E~h~pDG~keI~fPDGt~k~~~~dG~e~~~fpDGT~~~~~~nG~k~i 123 (179)
T PF07202_consen 50 YYYADAQTTHTTYP--DGLEVYEFPNGQI----EKHYPDGSKEIVFPDGTIKYIHPDGREETVFPDGTIVTIDPNGDKTI 123 (179)
T ss_pred EEEeCCCEEEEEcC--CCcEEEEeCCCce----EEEcCCCCEEEEeCCCcEEEEeCCCcEEEECCCceEEEEeCCCcEEE
Confidence 35666665555542 2332222222221 1134477777743 23333333 67776555555545555
Q ss_pred EecCCcceEEeeeceEEEEE
Q psy2753 84 HHGKPMLTKVCTEGRLILEF 103 (247)
Q Consensus 84 ~y~~~~~~~V~~eG~Lr~~F 103 (247)
.|.++. -+|++.+.-|.+|
T Consensus 124 ~~pnGq-~ei~t~~~krrey 142 (179)
T PF07202_consen 124 TFPNGQ-KEIHTADFKRREY 142 (179)
T ss_pred EeCCCc-EEEEccccEEEEc
Confidence 666653 4566666666666
Done!