Query psy2753
Match_columns 247
No_of_seqs 114 out of 132
Neff 5.0
Searched_HMMs 13730
Date Sat Aug 17 00:21:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2753.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2753hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1acfa_ d.110.1.1 (A:) Profili 41.5 14 0.001 26.9 4.3 84 7-90 2-105 (125)
2 d1doqa_ a.60.3.1 (A:) C-termin 28.6 6.1 0.00044 26.6 0.2 45 139-184 4-53 (69)
3 d3er7a1 d.17.4.24 (A:5-122) Un 22.1 12 0.00085 27.8 0.7 24 3-26 42-65 (118)
4 d1lb2b_ a.60.3.1 (B:) C-termin 19.8 19 0.0014 24.2 1.4 41 141-182 4-49 (72)
5 d1t01a2 a.24.9.1 (A:126-252) V 18.7 18 0.0013 26.9 1.1 25 152-176 14-38 (127)
6 d1s5aa_ d.17.4.10 (A:) Hypothe 15.2 68 0.0049 21.7 3.7 39 11-50 26-64 (139)
7 d3cu3a1 d.17.4.28 (A:9-170) Un 13.0 47 0.0034 23.8 2.2 46 12-63 29-74 (162)
8 d2oyza1 b.82.1.22 (A:2-94) Unc 12.6 1.8E+02 0.013 20.1 5.3 53 47-109 6-61 (93)
9 d1ypra_ d.110.1.1 (A:) Profili 12.4 1.1E+02 0.0077 21.7 4.1 82 7-89 2-104 (125)
10 d1wjta_ a.48.3.1 (A:) Transcri 11.4 1.9E+02 0.014 19.8 5.2 48 147-200 42-89 (103)
No 1
>d1acfa_ d.110.1.1 (A:) Profilin (actin-binding protein) {Acanthamoeba castellanii [TaxId: 5755]}
Probab=41.55 E-value=14 Score=26.85 Aligned_cols=84 Identities=17% Similarity=0.301 Sum_probs=50.1
Q ss_pred HHHHHHhhcCCCCceEE-EeecCCCC-----eeeeeccc---chhhHH---HHhhccccee---eeeeccCCcccc----
Q psy2753 7 WDAFATEFFEDDATLTL-TFCLEDGP-----KRYTIGRT---LIPRYF---RSIFDGGITE---LYYNLKHPKESF---- 67 (247)
Q Consensus 7 W~~FV~eFFsp~a~lr~-~~~~~~~~-----K~FEI~~~---~LPRyF---~t~F~sGV~~---~~~~L~~p~e~l---- 67 (247)
||.+|++....++.... .+++.||. .+|.++.. .|-..| ...+.+|+.= =|++++.-.+.+
T Consensus 2 Wq~yvd~~L~~tg~v~~aaI~g~DG~vwA~S~gf~~~~~E~~~i~~~f~d~~~~~~~Gi~i~G~KY~~~~~d~~~i~~kk 81 (125)
T d1acfa_ 2 WQTYVDTNLVGTGAVTQAAILGLDGNTWATSAGFAVTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRADDRSIYGKK 81 (125)
T ss_dssp HHHHHHTTTGGGTSCSEEEEEETTSCEEEECTTCCCCHHHHHHHHHHHHCCHHHHHHCEEETTEEEEEEEESSSEEEEEE
T ss_pred hHHHHHHHhccccCcceeEEEcCCCCEEEECCCCCCCHHHHHHHHHhccChhhhhhCCEEECCeEEEEEecCCCEEEEEc
Confidence 99999998887776644 45555553 45665543 333444 2223334321 155555433332
Q ss_pred -cCcceEEEcCCcEEEEEecCCcc
Q psy2753 68 -HNTSITLDCDQCTMVTHHGKPML 90 (247)
Q Consensus 68 -~ng~i~~e~~~a~~v~~y~~~~~ 90 (247)
..|.+.+-+++|.++..|+.++.
T Consensus 82 ~~~Gi~i~kT~~~iiig~y~e~~~ 105 (125)
T d1acfa_ 82 GSSGVITVKTSKAILVGVYNEKIQ 105 (125)
T ss_dssp TTEEEEEEECSSEEEEEEECTTSC
T ss_pred CCCCEEEEEcCCEEEEEECCCCCC
Confidence 25678888889999988887653
No 2
>d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}
Probab=28.60 E-value=6.1 Score=26.56 Aligned_cols=45 Identities=18% Similarity=0.283 Sum_probs=33.1
Q ss_pred HhhccCCCCCCCChhhhhhhhHHHHhhchHHHHHhhhc-----CCCCHHHH
Q psy2753 139 EQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKA-----YALSPRDC 184 (247)
Q Consensus 139 kql~k~V~~~Gv~~~~~r~LeI~Eil~~Mq~Lm~f~k~-----~~l~P~ea 184 (247)
+.|...|.+.|++.+++|||+=+. |.-..||..+... +++|+.-.
T Consensus 4 ~~L~~~I~~L~LS~R~~N~L~~~g-I~tv~dL~~~s~~dLl~i~n~G~ksl 53 (69)
T d1doqa_ 4 EELDLPLEELGLSTRVLHSLKEEG-IESVRALLALNLKDLKNIPGIGERSL 53 (69)
T ss_dssp SSCCCCHHHHTCCHHHHHHHHHTT-CCSHHHHHHSCHHHHTTSTTCCHHHH
T ss_pred hHhCCcHHHcCCCHHHHHHHHHcC-CccHHHHHHCCHHHHHhCCCCCHHHH
Confidence 345667889999999999998554 4567788887333 88887543
No 3
>d3er7a1 d.17.4.24 (A:5-122) Uncharacterized protein Exig0174 {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}
Probab=22.06 E-value=12 Score=27.78 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=21.6
Q ss_pred chHHHHHHHHhhcCCCCceEEEee
Q psy2753 3 DNLWWDAFATEFFEDDATLTLTFC 26 (247)
Q Consensus 3 di~yW~~FV~eFFsp~a~lr~~~~ 26 (247)
.+.=|..|+.+||..+..+||.|.
T Consensus 42 G~~ai~sFf~~FF~~N~e~KHlwd 65 (118)
T d3er7a1 42 GIDAWKQFVRMVFTANQDIKHMYA 65 (118)
T ss_dssp SHHHHHHHHHHHHHHEEEEEEEEC
T ss_pred ChHHHHHHHHHHHhcchHHHHHhc
Confidence 466799999999999999999986
No 4
>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=19.82 E-value=19 Score=24.16 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=31.1
Q ss_pred hccCCCCCCCChhhhhhhhHHHHhhchHHHHHhhhc-----CCCCHH
Q psy2753 141 LTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKA-----YALSPR 182 (247)
Q Consensus 141 l~k~V~~~Gv~~~~~r~LeI~Eil~~Mq~Lm~f~k~-----~~l~P~ 182 (247)
|.+.|.+.+++.+++|||+=+. |.-..||+.++.. +++|..
T Consensus 4 L~k~I~~L~lS~R~~N~L~~~g-I~tvgdL~~~s~~dLl~~~n~G~K 49 (72)
T d1lb2b_ 4 LLRPVDDLELTVRSANCLKAEA-IHYIGDLVQRTEVELLKTPNLGKK 49 (72)
T ss_dssp TTSBGGGGCCCHHHHHHHHHTT-CCBHHHHHTCCHHHHHHSTTCCHH
T ss_pred hcCcHHHhCCCHHHHHHHhHcC-CcCHHHHHhCCHHHHHhCCCCcHh
Confidence 5678999999999999998554 4567777777433 777764
No 5
>d1t01a2 a.24.9.1 (A:126-252) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=18.65 E-value=18 Score=26.90 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=22.0
Q ss_pred hhhhhhhhHHHHhhchHHHHHhhhc
Q psy2753 152 NSTLNYLRLCVILEPMQELMSRHKA 176 (247)
Q Consensus 152 ~~~~r~LeI~Eil~~Mq~Lm~f~k~ 176 (247)
+.+..+|..+|.++.|+||..+-++
T Consensus 14 ~~V~~~L~~~e~v~s~~dLv~~~k~ 38 (127)
T d1t01a2 14 KGILEYLTVAEVVETMEDLVTYTKN 38 (127)
T ss_dssp HHHHHHHTTTTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4688999999999999999999554
No 6
>d1s5aa_ d.17.4.10 (A:) Hypothetical protein YesE {Bacillus subtilis [TaxId: 1423]}
Probab=15.24 E-value=68 Score=21.70 Aligned_cols=39 Identities=26% Similarity=0.504 Sum_probs=23.4
Q ss_pred HHhhcCCCCceEEEeecCCCCeeeeecccchhhHHHHhhc
Q psy2753 11 ATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFD 50 (247)
Q Consensus 11 V~eFFsp~a~lr~~~~~~~~~K~FEI~~~~LPRyF~t~F~ 50 (247)
+.++|+|+++++........++++ -|...|-+||...++
T Consensus 26 ~~~l~~eD~v~~~p~~~~~~~~~~-~G~~~i~~~~~~~~~ 64 (139)
T d1s5aa_ 26 WTELWDENAVFEFPYAPEGSPKRI-EGKAAIYDYIKDYPK 64 (139)
T ss_dssp HHTTEEEEEEEECTTCCTTSCSEE-ESHHHHHHHHTTHHH
T ss_pred HHHHhCCceEEEEccCCcccccee-cchHHHHHhhhhchh
Confidence 468999999886643333233333 245666677766554
No 7
>d3cu3a1 d.17.4.28 (A:9-170) Uncharacterized protein NpunR1993 {Nostoc punctiforme [TaxId: 272131]}
Probab=12.98 E-value=47 Score=23.80 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=29.5
Q ss_pred HhhcCCCCceEEEeecCCCCeeeeecccchhhHHHHhhcccceeeeeeccCC
Q psy2753 12 TEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHP 63 (247)
Q Consensus 12 ~eFFsp~a~lr~~~~~~~~~K~FEI~~~~LPRyF~t~F~sGV~~~~~~L~~p 63 (247)
..+|++++++ -...+. .+ -++..|-.+|...|.+..+...+.+...
T Consensus 29 ~~l~a~D~~~----~~~~g~-~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~~ 74 (162)
T d3cu3a1 29 AAPFSETADF----ITFEGT-HL-KGRKEIAAFHQQAFDTVVKGTRLEGEVD 74 (162)
T ss_dssp HTTEEEEEEE----ECTTCC-EE-EHHHHHHHHHHHHHHTTTTTCEEEEEEE
T ss_pred HHhhccCeee----eccccc-cc-CCHHHHHHHHHHHHhhcccceeEEeece
Confidence 4578888864 122222 23 3899999999999887766555544433
No 8
>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=12.55 E-value=1.8e+02 Score=20.07 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=32.4
Q ss_pred HhhcccceeeeeeccCCcccc---cCcceEEEcCCcEEEEEecCCcceEEeeeceEEEEEecCccc
Q psy2753 47 SIFDGGITELYYNLKHPKESF---HNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLM 109 (247)
Q Consensus 47 t~F~sGV~~~~~~L~~p~e~l---~ng~i~~e~~~a~~v~~y~~~~~~~V~~eG~Lr~~F~~d~~l 109 (247)
+.||+.|+++.+.-++.+..+ ..|-..+.-+..- + =.+..|.|.+...-++++
T Consensus 6 vYFdGkV~S~~~~~dg~~kTlGVm~pGeY~F~T~~~E-~---------MeivsG~l~V~lpg~~ew 61 (93)
T d2oyza1 6 SYFAGGVKSLGFNQHGQDVSVGVMLPGEYTFGTQAPE-R---------MTVVKGALVVKRVGEADW 61 (93)
T ss_dssp EEGGGTEEEEEEEETTEEEEEEEECSEEEEEEESSCE-E---------EEEEESEEEEEETTCSSC
T ss_pred EEECCEEEEEEEecCCCeeEEEEEeccEEEEcCCCCE-E---------EEEEeeEEEEECCCCccc
Confidence 469999999998767777663 2443332222221 1 224569999988754443
No 9
>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.44 E-value=1.1e+02 Score=21.65 Aligned_cols=82 Identities=11% Similarity=0.281 Sum_probs=42.0
Q ss_pred HHHHHHhhcCCCCceEE-EeecCCCC------eeeeecccchhhHHH------Hhhcccce---eeeeeccCCcccc---
Q psy2753 7 WDAFATEFFEDDATLTL-TFCLEDGP------KRYTIGRTLIPRYFR------SIFDGGIT---ELYYNLKHPKESF--- 67 (247)
Q Consensus 7 W~~FV~eFFsp~a~lr~-~~~~~~~~------K~FEI~~~~LPRyF~------t~F~sGV~---~~~~~L~~p~e~l--- 67 (247)
||.+|+..- .++.+.. .+++-+|. .+|.++..=+-.+-. ..+.+|+. .=|++++.-.+.+
T Consensus 2 Wq~Yvd~L~-~~g~v~~aaI~g~dg~svwA~S~gf~~~~~E~~~i~~~f~~~~~~~~~Gi~i~G~KY~~~~~d~~~i~~k 80 (125)
T d1ypra_ 2 WQAYTDNLI-GTGKVDKAVIYSRAGDAVWATSGGLSLQPNEIGEIVQGFDNPAGLQSNGLHIQGQKFMLLRADDRSIYGR 80 (125)
T ss_dssp HHHHHHHHH-HTSSCSEEEEEETTSCCEEEEESCCCCCHHHHHHHHHHTTCTHHHHHHCEEETTEEEEEEEECSSEEEEE
T ss_pred HHHHHHhHh-cCCCcCeEEEEeCCCCeeEEECCCCCCCHHHHHHHHHHhcCcchhccCCEEEcCeEEEEEecCCCeEEEE
Confidence 888887654 2333322 34433331 356655433222221 12233332 1155555433332
Q ss_pred --cCcceEEEcCCcEEEEEecCCc
Q psy2753 68 --HNTSITLDCDQCTMVTHHGKPM 89 (247)
Q Consensus 68 --~ng~i~~e~~~a~~v~~y~~~~ 89 (247)
.+|.+..-+.+|.++.+|+.++
T Consensus 81 k~~~Gi~i~kT~~~iiig~y~~~~ 104 (125)
T d1ypra_ 81 HDAEGVVCVRTKQTVIIAHYPPTV 104 (125)
T ss_dssp ETTEEEEEEECSSEEEEEEECTTS
T ss_pred eCCCcEEEEECCCEEEEEEcCCCC
Confidence 2567888888888888888754
No 10
>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.39 E-value=1.9e+02 Score=19.83 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=34.5
Q ss_pred CCCCChhhhhhhhHHHHhhchHHHHHhhhcCCCCHHHHHHHHHhhhhhhccCCC
Q psy2753 147 RQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTALFQKWQRMVAPP 200 (247)
Q Consensus 147 ~~Gv~~~~~r~LeI~Eil~~Mq~Lm~f~k~~~l~P~eaLk~~lfq~~q~~~~p~ 200 (247)
..-++...++-=.|+.+|+.+. ++..-...-.|-..|..+|..|+.-+
T Consensus 42 ~~~it~e~L~~T~IGk~Vn~Lr------K~~~~~~v~~lAk~Lv~~WK~~v~~~ 89 (103)
T d1wjta_ 42 SCQMSIQLLQTTRIGVAVNGVR------KHCSDKEVVSLAKVLIKNWKRLLDSP 89 (103)
T ss_dssp TSCCCHHHHHHTCHHHHHHHHH------HHCCCSHHHHHHHHHHHHHHHHTCCS
T ss_pred cCCCCHHHHHhCCccHhHHHHH------ccCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667777777777777654 34444677788899999999998654
Done!