Your job contains 1 sequence.
>psy2753
ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL
KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ
HRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALS
PRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGGAANSAPPAPSKKRSPGPN
FSLASQV
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2753
(247 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NRA7 - symbol:LDB2 "LIM domain-binding protei... 967 2.5e-97 1
UNIPROTKB|E9PFI4 - symbol:LDB2 "LIM domain-binding protei... 967 2.5e-97 1
UNIPROTKB|O43679 - symbol:LDB2 "LIM domain-binding protei... 967 2.5e-97 1
UNIPROTKB|E1C373 - symbol:LDB2 "LIM domain-binding protei... 966 3.2e-97 1
UNIPROTKB|F1NGI1 - symbol:LDB2 "LIM domain-binding protei... 966 3.2e-97 1
UNIPROTKB|Q9W676 - symbol:LDB2 "LIM domain-binding protei... 964 5.2e-97 1
UNIPROTKB|G5E9Y7 - symbol:LDB2 "LIM domain-binding protei... 963 6.6e-97 1
UNIPROTKB|F1PRG9 - symbol:LDB2 "Uncharacterized protein" ... 958 2.2e-96 1
UNIPROTKB|Q6NVL6 - symbol:ldb1 "LIM domain-binding protei... 957 2.9e-96 1
MGI|MGI:894670 - symbol:Ldb2 "LIM domain binding 2" speci... 957 2.9e-96 1
RGD|1307921 - symbol:Ldb2 "LIM domain binding 2" species:... 957 2.9e-96 1
UNIPROTKB|D4A0D2 - symbol:Ldb2 "Protein Ldb2" species:101... 957 2.9e-96 1
UNIPROTKB|F6R129 - symbol:LDB2 "Uncharacterized protein" ... 956 3.7e-96 1
UNIPROTKB|F1NI08 - symbol:LDB1 "LIM domain-binding protei... 954 5.9e-96 1
UNIPROTKB|F1NI09 - symbol:LDB1 "LIM domain-binding protei... 954 5.9e-96 1
UNIPROTKB|F1NI21 - symbol:LDB1 "LIM domain-binding protei... 954 5.9e-96 1
UNIPROTKB|F1NKP2 - symbol:LDB1 "LIM domain-binding protei... 954 5.9e-96 1
UNIPROTKB|O42252 - symbol:LDB1 "LIM domain-binding protei... 954 5.9e-96 1
UNIPROTKB|Q1EQW7 - symbol:ldb2 "LIM domain-binding protei... 954 5.9e-96 1
FB|FBgn0013764 - symbol:Chi "Chip" species:7227 "Drosophi... 953 7.6e-96 1
UNIPROTKB|P70060 - symbol:ldb1 "LIM domain-binding protei... 952 9.7e-96 1
ZFIN|ZDB-GENE-990415-136 - symbol:ldb2a "LIM-domain bindi... 923 3.0e-95 2
ZFIN|ZDB-GENE-990415-138 - symbol:ldb1a "LIM-domain bindi... 941 1.4e-94 1
ZFIN|ZDB-GENE-990415-135 - symbol:ldb1b "LIM-domain bindi... 935 6.1e-94 1
UNIPROTKB|F1N4N0 - symbol:Bt.4553 "Uncharacterized protei... 930 2.1e-93 1
UNIPROTKB|E2RH17 - symbol:LDB1 "Uncharacterized protein" ... 930 2.1e-93 1
UNIPROTKB|Q86U70 - symbol:LDB1 "LIM domain-binding protei... 930 2.1e-93 1
UNIPROTKB|F2Z5G6 - symbol:LDB1 "Uncharacterized protein" ... 930 2.1e-93 1
MGI|MGI:894762 - symbol:Ldb1 "LIM domain binding 1" speci... 930 2.1e-93 1
RGD|1310359 - symbol:Ldb1 "LIM domain binding 1" species:... 930 2.1e-93 1
ZFIN|ZDB-GENE-990415-137 - symbol:ldb2b "LIM-domain bindi... 798 2.0e-79 1
UNIPROTKB|H0YA09 - symbol:LDB2 "LIM domain-binding protei... 773 9.0e-77 1
UNIPROTKB|D6RAT1 - symbol:LDB2 "LIM domain-binding protei... 658 1.4e-64 1
UNIPROTKB|I3LLH6 - symbol:LDB2 "Uncharacterized protein" ... 647 2.0e-63 1
UNIPROTKB|B7Z2D3 - symbol:LDB2 "cDNA FLJ52487, highly sim... 573 1.4e-55 1
UNIPROTKB|Q8I4H8 - symbol:ldb-1 "Protein LDB-1, isoform b... 294 2.8e-25 1
UNIPROTKB|G5EEL0 - symbol:ldb-1 "Protein LDB-1, isoform a... 294 3.0e-25 1
WB|WBGene00002261 - symbol:ldb-1 species:6239 "Caenorhabd... 294 3.6e-25 1
UNIPROTKB|Q9U3E2 - symbol:ldb-1 "Protein LDB-1, isoform c... 294 3.6e-25 1
UNIPROTKB|E7EX95 - symbol:LDB2 "LIM domain-binding protei... 188 8.8e-15 1
UNIPROTKB|E9PGU0 - symbol:LDB2 "LIM domain-binding protei... 186 1.4e-14 1
>UNIPROTKB|F1NRA7 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
EMBL:AADN02015128 EMBL:AADN02015129 EMBL:AADN02015130
EMBL:AADN02015131 EMBL:AADN02015132 EMBL:AADN02015133
EMBL:AADN02015134 EMBL:AADN02015135 IPI:IPI01017131
Ensembl:ENSGALT00000037306 ArrayExpress:F1NRA7 Uniprot:F1NRA7
Length = 330
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 181/253 (71%), Positives = 203/253 (80%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+RELVPR+I+ M QDP +LEQL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 165 YRELVPRSILAMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXX-- 236
LSPRDCLKT LFQKWQRMVAPP +++P KRRKR
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPP--EPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTNSKK 282
Query: 237 --XXXNFSLASQV 247
N SL+SQV
Sbjct: 283 KSAAANLSLSSQV 295
>UNIPROTKB|E9PFI4 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 HGNC:HGNC:6533 ChiTaRS:LDB2
EMBL:AC005690 EMBL:AC097515 EMBL:AC104656 EMBL:AC105353
EMBL:AC106894 IPI:IPI00922054 Ensembl:ENST00000502640
UCSC:uc010iee.3 ArrayExpress:E9PFI4 Bgee:E9PFI4 Uniprot:E9PFI4
Length = 313
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 180/253 (71%), Positives = 204/253 (80%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+RELVPR+I+ M QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 165 YRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXX-- 236
LSPRDCLKT LFQKWQRMVAPP + +++P KRRKR
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKK 283
Query: 237 --XXXNFSLASQV 247
N SL+SQV
Sbjct: 284 KTTAANLSLSSQV 296
>UNIPROTKB|O43679 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0001942 "hair follicle development" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0010669 "epithelial structure maintenance" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0035019 "somatic
stem cell maintenance" evidence=IEA] [GO:0044089 "positive
regulation of cellular component biogenesis" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030274 "LIM domain
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR002691 GO:GO:0005634 GO:GO:0045944 GO:GO:0005667
GO:GO:0001942 GO:GO:0003712 GO:GO:0035019 GO:GO:0030274
GO:GO:0010669 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 OrthoDB:EOG4XWFXV PANTHER:PTHR10378 CTD:9079
EMBL:AF068651 EMBL:AF052389 EMBL:AF064492 EMBL:AF064493
EMBL:AF047337 EMBL:BC034019 IPI:IPI00014634 IPI:IPI00790687
IPI:IPI00855748 RefSeq:NP_001124306.1 RefSeq:NP_001281.1
UniGene:Hs.714330 ProteinModelPortal:O43679 SMR:O43679
DIP:DIP-24262N IntAct:O43679 MINT:MINT-233497 STRING:O43679
PhosphoSite:O43679 PRIDE:O43679 DNASU:9079 Ensembl:ENST00000304523
Ensembl:ENST00000441778 GeneID:9079 KEGG:hsa:9079 UCSC:uc003goz.3
UCSC:uc003gpa.3 UCSC:uc003gpb.3 GeneCards:GC04M016445
HGNC:HGNC:6533 HPA:CAB017544 MIM:603450 neXtProt:NX_O43679
PharmGKB:PA30317 InParanoid:O43679 OMA:LGNSSPW PhylomeDB:O43679
ChiTaRS:LDB2 GenomeRNAi:9079 NextBio:34017 ArrayExpress:O43679
Bgee:O43679 CleanEx:HS_LDB2 Genevestigator:O43679
GermOnline:ENSG00000169744 GO:GO:0044089 Uniprot:O43679
Length = 373
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 180/253 (71%), Positives = 204/253 (80%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+RELVPR+I+ M QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 165 YRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXX-- 236
LSPRDCLKT LFQKWQRMVAPP + +++P KRRKR
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKK 283
Query: 237 --XXXNFSLASQV 247
N SL+SQV
Sbjct: 284 KTTAANLSLSSQV 296
>UNIPROTKB|E1C373 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0001942 "hair follicle development" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0010669
"epithelial structure maintenance" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IEA] [GO:0035019 "somatic stem cell
maintenance" evidence=IEA] [GO:0044089 "positive regulation of
cellular component biogenesis" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR002691 GO:GO:0045944 GO:GO:0005667
GO:GO:0003712 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
GO:GO:0044089 EMBL:AADN02015128 EMBL:AADN02015129 EMBL:AADN02015130
EMBL:AADN02015131 EMBL:AADN02015132 EMBL:AADN02015133
EMBL:AADN02015134 EMBL:AADN02015135 IPI:IPI00822545
Ensembl:ENSGALT00000037307 ArrayExpress:E1C373 Uniprot:E1C373
Length = 337
Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
Identities = 180/252 (71%), Positives = 203/252 (80%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 11 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 70
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 71 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 130
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+RELVPR+I+ M QDP +LEQL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 131 YRELVPRSILAMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 190
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXX-- 236
LSPRDCLKT LFQKWQRMVAPP + +++P KRRKR
Sbjct: 191 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTNSKK 249
Query: 237 --XXXNFSLASQ 246
N SL+SQ
Sbjct: 250 KSAAANLSLSSQ 261
>UNIPROTKB|F1NGI1 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0001942 "hair follicle development" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0010669
"epithelial structure maintenance" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IEA] [GO:0035019 "somatic stem cell
maintenance" evidence=IEA] [GO:0044089 "positive regulation of
cellular component biogenesis" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR002691 GO:GO:0045944 GO:GO:0005667
GO:GO:0003712 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
IPI:IPI00586244 OMA:LGNSSPW GO:GO:0044089 EMBL:AADN02015128
EMBL:AADN02015129 EMBL:AADN02015130 EMBL:AADN02015131
EMBL:AADN02015132 EMBL:AADN02015133 EMBL:AADN02015134
EMBL:AADN02015135 Ensembl:ENSGALT00000023380 ArrayExpress:F1NGI1
Uniprot:F1NGI1
Length = 371
Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
Identities = 180/252 (71%), Positives = 203/252 (80%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+RELVPR+I+ M QDP +LEQL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 165 YRELVPRSILAMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXX-- 236
LSPRDCLKT LFQKWQRMVAPP + +++P KRRKR
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTNSKK 283
Query: 237 --XXXNFSLASQ 246
N SL+SQ
Sbjct: 284 KSAAANLSLSSQ 295
>UNIPROTKB|Q9W676 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030274 "LIM
domain binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002691 GO:GO:0005634 GO:GO:0003712
GO:GO:0030274 HSSP:P70662 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 PANTHER:PTHR10378 EMBL:AF069990 EMBL:AB250386
IPI:IPI00586244 IPI:IPI00775747 RefSeq:NP_990160.1 UniGene:Gga.3673
ProteinModelPortal:Q9W676 SMR:Q9W676 GeneID:395631 KEGG:gga:395631
CTD:9079 InParanoid:Q9W676 NextBio:20815704 Uniprot:Q9W676
Length = 371
Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
Identities = 180/252 (71%), Positives = 203/252 (80%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+RELVPR+I+ M QDP +LEQL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 165 YRELVPRSILPMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXX-- 236
LSPRDCLKT LFQKWQRMVAPP + +++P KRRKR
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTNSKK 283
Query: 237 --XXXNFSLASQ 246
N SL+SQ
Sbjct: 284 KSAAANLSLSSQ 295
>UNIPROTKB|G5E9Y7 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 EMBL:CH471069 PANTHER:PTHR10378 UniGene:Hs.714330
HGNC:HGNC:6533 ChiTaRS:LDB2 EMBL:AC005690 EMBL:AC097515
EMBL:AC104656 EMBL:AC105353 EMBL:AC106894 ProteinModelPortal:G5E9Y7
SMR:G5E9Y7 Ensembl:ENST00000515064 ArrayExpress:G5E9Y7 Bgee:G5E9Y7
Uniprot:G5E9Y7
Length = 371
Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
Identities = 179/252 (71%), Positives = 203/252 (80%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+RELVPR+I+ M QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 165 YRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXX-- 236
LSPRDCLKT LFQKWQRMVAPP + +++P KRRKR
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKK 283
Query: 237 --XXXNFSLASQ 246
N SL+SQ
Sbjct: 284 KTTAANLSLSSQ 295
>UNIPROTKB|F1PRG9 [details] [associations]
symbol:LDB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003712 "transcription
cofactor activity" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
OMA:LGNSSPW EMBL:AAEX03002466 EMBL:AAEX03002467 EMBL:AAEX03002468
Ensembl:ENSCAFT00000024036 Uniprot:F1PRG9
Length = 372
Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
Identities = 179/253 (70%), Positives = 202/253 (79%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQC MVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+RELVPR+I+ M QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 165 YRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXXX- 237
LSPRDCLKT LFQKWQRMVAPP +++P KRRKR
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPP--EPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKK 282
Query: 238 ---XXNFSLASQV 247
N SL+SQV
Sbjct: 283 KTPAANLSLSSQV 295
>UNIPROTKB|Q6NVL6 [details] [associations]
symbol:ldb1 "LIM domain-binding protein 1" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0030274 "LIM domain binding" evidence=ISS] [GO:0042803 "protein
homodimerization activity" evidence=ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR002691
GO:GO:0007275 GO:GO:0005634 GO:GO:0042803 GO:GO:0045944
GO:GO:0003712 GO:GO:0030274 HSSP:P70662 CTD:8861 eggNOG:NOG282114
HOGENOM:HOG000030908 HOVERGEN:HBG000135 KO:K15617 OrthoDB:EOG4XWFXV
PANTHER:PTHR10378 GeneTree:ENSGT00390000005639 EMBL:BC067989
RefSeq:NP_998843.1 UniGene:Str.5983 ProteinModelPortal:Q6NVL6
SMR:Q6NVL6 STRING:Q6NVL6 Ensembl:ENSXETT00000003881 GeneID:407886
KEGG:xtr:407886 Xenbase:XB-GENE-493239 Bgee:Q6NVL6 Uniprot:Q6NVL6
Length = 373
Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
Identities = 174/217 (80%), Positives = 192/217 (88%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 48 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 107
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKESFHN ++LDCDQCTMVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 108 KHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 167
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 168 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 227
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
LSPRDCLKT LFQKWQRMVAPP + Q P NKRRKR
Sbjct: 228 LSPRDCLKTCLFQKWQRMVAPPAEPARQAP-NKRRKR 263
>MGI|MGI:894670 [details] [associations]
symbol:Ldb2 "LIM domain binding 2" species:10090 "Mus
musculus" [GO:0000989 "transcription factor binding transcription
factor activity" evidence=IPI] [GO:0001942 "hair follicle
development" evidence=IGI] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005667 "transcription
factor complex" evidence=IDA] [GO:0010669 "epithelial structure
maintenance" evidence=IGI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0035019 "somatic stem cell maintenance" evidence=IGI]
[GO:0044089 "positive regulation of cellular component biogenesis"
evidence=IGI] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI] InterPro:IPR002691
MGI:MGI:894670 GO:GO:0045944 GO:GO:0005667 GO:GO:0001942
GO:GO:0003712 GO:GO:0035019 GO:GO:0000989 GO:GO:0030274
GO:GO:0010669 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 OrthoDB:EOG4XWFXV PANTHER:PTHR10378
GeneTree:ENSGT00390000005639 CTD:9079 OMA:LGNSSPW ChiTaRS:LDB2
GO:GO:0044089 EMBL:U89487 EMBL:U89489 EMBL:AK147160 EMBL:AK146860
EMBL:BC079611 IPI:IPI00116609 IPI:IPI00607962 IPI:IPI00798495
RefSeq:NP_001070866.1 RefSeq:NP_034828.3 UniGene:Mm.25785
ProteinModelPortal:O55203 SMR:O55203 DIP:DIP-46444N STRING:O55203
PhosphoSite:O55203 PRIDE:O55203 Ensembl:ENSMUST00000070748
GeneID:16826 KEGG:mmu:16826 UCSC:uc008xis.1 UCSC:uc008xit.1
UCSC:uc008xiu.1 InParanoid:O55203 NextBio:290728 Bgee:O55203
CleanEx:MM_LDB2 Genevestigator:O55203 GermOnline:ENSMUSG00000039706
Uniprot:O55203
Length = 373
Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
Identities = 173/217 (79%), Positives = 196/217 (90%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQC MVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+RELVPR+I+ M QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 165 YRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
LSPRDCLKT LFQKWQRMVAPP + +++P KRRKR
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKR 260
>RGD|1307921 [details] [associations]
symbol:Ldb2 "LIM domain binding 2" species:10116 "Rattus
norvegicus" [GO:0000989 "transcription factor binding transcription
factor activity" evidence=ISO] [GO:0001942 "hair follicle
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=IEA;ISO]
[GO:0010669 "epithelial structure maintenance" evidence=IEA;ISO]
[GO:0019899 "enzyme binding" evidence=IEA;ISO] [GO:0030274 "LIM
domain binding" evidence=IEA] [GO:0035019 "somatic stem cell
maintenance" evidence=IEA;ISO] [GO:0044089 "positive regulation of
cellular component biogenesis" evidence=IEA;ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA;ISO] InterPro:IPR002691 RGD:1307921
GO:GO:0045944 GO:GO:0005667 GO:GO:0001942 GO:GO:0003712
GO:GO:0035019 GO:GO:0010669 PANTHER:PTHR10378
GeneTree:ENSGT00390000005639 GO:GO:0044089 IPI:IPI00780182
Ensembl:ENSRNOT00000058803 ArrayExpress:E9PTQ0 Uniprot:E9PTQ0
Length = 339
Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
Identities = 173/217 (79%), Positives = 196/217 (90%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 11 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 70
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQC MVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 71 KHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 130
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+RELVPR+I+ M QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 131 YRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 190
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
LSPRDCLKT LFQKWQRMVAPP + +++P KRRKR
Sbjct: 191 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKR 226
>UNIPROTKB|D4A0D2 [details] [associations]
symbol:Ldb2 "Protein Ldb2" species:10116 "Rattus
norvegicus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 RGD:1307921
GO:GO:0005634 GO:GO:0003712 PANTHER:PTHR10378 IPI:IPI00361834
Ensembl:ENSRNOT00000004335 ArrayExpress:D4A0D2 Uniprot:D4A0D2
Length = 297
Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
Identities = 173/217 (79%), Positives = 196/217 (90%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 11 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 70
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQC MVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 71 KHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 130
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+RELVPR+I+ M QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 131 YRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 190
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
LSPRDCLKT LFQKWQRMVAPP + +++P KRRKR
Sbjct: 191 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKR 226
>UNIPROTKB|F6R129 [details] [associations]
symbol:LDB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0044089 "positive
regulation of cellular component biogenesis" evidence=IEA]
[GO:0035019 "somatic stem cell maintenance" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0010669 "epithelial
structure maintenance" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0001942 "hair follicle
development" evidence=IEA] [GO:0030274 "LIM domain binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] InterPro:IPR002691 GO:GO:0045944 GO:GO:0005667
GO:GO:0001942 GO:GO:0003712 GO:GO:0035019 GO:GO:0010669
PANTHER:PTHR10378 GeneTree:ENSGT00390000005639 CTD:9079 OMA:LGNSSPW
GO:GO:0044089 EMBL:DAAA02018776 EMBL:DAAA02018777 EMBL:DAAA02018778
EMBL:DAAA02018779 EMBL:DAAA02018780 EMBL:DAAA02018781
EMBL:DAAA02018782 EMBL:DAAA02018783 EMBL:DAAA02018784
EMBL:DAAA02018785 EMBL:DAAA02018786 EMBL:DAAA02018787
EMBL:DAAA02018788 EMBL:DAAA02018789 EMBL:DAAA02018790
EMBL:DAAA02018791 EMBL:DAAA02018792 IPI:IPI00742582
RefSeq:NP_001040076.2 UniGene:Bt.11446 Ensembl:ENSBTAT00000018687
GeneID:617976 KEGG:bta:617976 NextBio:20900928 Uniprot:F6R129
Length = 370
Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
Identities = 178/252 (70%), Positives = 201/252 (79%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYVL 104
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQC MVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+RELVPR+I+ M QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 165 YRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXX-- 236
LSPRDCLKT LFQKWQRMVAPP +++P KRRKR
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPP--EPTRQPTTKRRKRKNSTSSTSNSSAGNAANSTGSKK 282
Query: 237 --XXXNFSLASQ 246
N SL+SQ
Sbjct: 283 KTTAANLSLSSQ 294
>UNIPROTKB|F1NI08 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
EMBL:AADN02046426 EMBL:AADN02046427 EMBL:AADN02046428
EMBL:AADN02046429 EMBL:AADN02048363 EMBL:AADN02048364
IPI:IPI01017181 Ensembl:ENSGALT00000039411 Uniprot:F1NI08
Length = 323
Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
Identities = 173/217 (79%), Positives = 193/217 (88%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 48 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 107
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKESFHN ++LDCDQCTMVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 108 KHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 167
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 168 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 227
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
LSPRDCLKT LFQKWQRMVAPP + Q+P+ KRRKR
Sbjct: 228 LSPRDCLKTCLFQKWQRMVAPPAEPARQQPS-KRRKR 263
>UNIPROTKB|F1NI09 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000972 "transcription-dependent tethering of RNA polymerase II
gene DNA at nuclear periphery" evidence=IEA] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0001702 "gastrulation with mouth forming second"
evidence=IEA] [GO:0001942 "hair follicle development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005911 "cell-cell
junction" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0009948
"anterior/posterior axis specification" evidence=IEA] [GO:0010669
"epithelial structure maintenance" evidence=IEA] [GO:0016055 "Wnt
receptor signaling pathway" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0022607 "cellular component
assembly" evidence=IEA] [GO:0030274 "LIM domain binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0035019 "somatic stem
cell maintenance" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0043621 "protein
self-association" evidence=IEA] [GO:0043973 "histone H3-K4
acetylation" evidence=IEA] [GO:0045647 "negative regulation of
erythrocyte differentiation" evidence=IEA] [GO:0045785 "positive
regulation of cell adhesion" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0046985 "positive
regulation of hemoglobin biosynthetic process" evidence=IEA]
[GO:0060322 "head development" evidence=IEA] InterPro:IPR002691
GO:GO:0045892 GO:GO:0016055 GO:GO:0045944 GO:GO:0003682
GO:GO:0005911 GO:GO:0005667 GO:GO:0000790 GO:GO:0006366
GO:GO:0045785 GO:GO:0003712 GO:GO:0001158 GO:GO:0032784
GO:GO:0045647 GO:GO:0046985 PANTHER:PTHR10378 OMA:GSNSPWN
GO:GO:0022607 GO:GO:0043973 GO:GO:0000972
GeneTree:ENSGT00390000005639 EMBL:AADN02046426 EMBL:AADN02046427
EMBL:AADN02046428 EMBL:AADN02046429 EMBL:AADN02048363
EMBL:AADN02048364 IPI:IPI00818108 Ensembl:ENSGALT00000039410
Uniprot:F1NI09
Length = 377
Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
Identities = 174/218 (79%), Positives = 192/218 (88%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 48 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 107
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKESFHN ++LDCDQCTMVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 108 KHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 167
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 168 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 227
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPA-NKRRKR 215
LSPRDCLKT LFQKWQRMVAPPG E R +KRRKR
Sbjct: 228 LSPRDCLKTCLFQKWQRMVAPPGPAEPARQQPSKRRKR 265
>UNIPROTKB|F1NI21 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
EMBL:AADN02046426 EMBL:AADN02046427 EMBL:AADN02046428
EMBL:AADN02046429 EMBL:AADN02048363 EMBL:AADN02048364
IPI:IPI01017094 Ensembl:ENSGALT00000039405 Uniprot:F1NI21
Length = 366
Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
Identities = 173/217 (79%), Positives = 193/217 (88%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 41 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 100
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKESFHN ++LDCDQCTMVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 101 KHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 160
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 161 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 220
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
LSPRDCLKT LFQKWQRMVAPP + Q+P+ KRRKR
Sbjct: 221 LSPRDCLKTCLFQKWQRMVAPPAEPARQQPS-KRRKR 256
>UNIPROTKB|F1NKP2 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 IPI:IPI00594578 PANTHER:PTHR10378
GeneTree:ENSGT00390000005639 EMBL:AADN02046426 EMBL:AADN02046427
EMBL:AADN02046428 EMBL:AADN02046429 EMBL:AADN02048363
EMBL:AADN02048364 Ensembl:ENSGALT00000012362 Uniprot:F1NKP2
Length = 368
Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
Identities = 173/217 (79%), Positives = 193/217 (88%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 41 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 100
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKESFHN ++LDCDQCTMVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 101 KHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 160
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 161 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 220
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
LSPRDCLKT LFQKWQRMVAPP + Q+P+ KRRKR
Sbjct: 221 LSPRDCLKTCLFQKWQRMVAPPAEPARQQPS-KRRKR 256
>UNIPROTKB|O42252 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0043234 "protein complex" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0030182 "neuron
differentiation" evidence=ISS] [GO:0030274 "LIM domain binding"
evidence=ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISS] [GO:0045647 "negative regulation of erythrocyte
differentiation" evidence=ISS] [GO:0009948 "anterior/posterior axis
specification" evidence=ISS] [GO:0016055 "Wnt receptor signaling
pathway" evidence=ISS] InterPro:IPR002691 GO:GO:0005634
GO:GO:0043234 GO:GO:0042803 GO:GO:0016055 GO:GO:0030182
GO:GO:0003712 GO:GO:0009948 GO:GO:0030274 GO:GO:0045647
EMBL:AF026037 EMBL:AF026038 EMBL:AF069991 EMBL:AB250385
IPI:IPI00594578 IPI:IPI00821941 IPI:IPI00822885 IPI:IPI00845165
RefSeq:NP_990401.1 UniGene:Gga.377 HSSP:P70662
ProteinModelPortal:O42252 SMR:O42252 PRIDE:O42252 GeneID:395952
KEGG:gga:395952 CTD:8861 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 KO:K15617 OrthoDB:EOG4XWFXV NextBio:20816017
PANTHER:PTHR10378 Uniprot:O42252
Length = 411
Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
Identities = 173/217 (79%), Positives = 193/217 (88%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 84 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 143
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKESFHN ++LDCDQCTMVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 144 KHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 203
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 204 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 263
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
LSPRDCLKT LFQKWQRMVAPP + Q+P+ KRRKR
Sbjct: 264 LSPRDCLKTCLFQKWQRMVAPPAEPARQQPS-KRRKR 299
>UNIPROTKB|Q1EQW7 [details] [associations]
symbol:ldb2 "LIM domain-binding protein 2" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0030274 "LIM domain binding"
evidence=ISS] InterPro:IPR002691 GO:GO:0005634 GO:GO:0003712
GO:GO:0030274 HOVERGEN:HBG000135 PANTHER:PTHR10378 CTD:9079
EMBL:AB250388 EMBL:AB250389 RefSeq:NP_001089184.1 UniGene:Xl.57032
ProteinModelPortal:Q1EQW7 SMR:Q1EQW7 GeneID:734228 KEGG:xla:734228
Xenbase:XB-GENE-490283 Uniprot:Q1EQW7
Length = 398
Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
Identities = 173/217 (79%), Positives = 196/217 (90%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+REL+PR+I+ M QDP +LEQL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 165 YRELLPRSILAMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
LSPRDCLKT LFQKWQRMVAPP + +++ KRRKR
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQTTTKRRKR 260
>FB|FBgn0013764 [details] [associations]
symbol:Chi "Chip" species:7227 "Drosophila melanogaster"
[GO:0006351 "transcription, DNA-dependent" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007350 "blastoderm
segmentation" evidence=TAS] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0030274 "LIM domain binding"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008134 "transcription factor binding"
evidence=IPI] [GO:0001085 "RNA polymerase II transcription factor
binding" evidence=IPI] [GO:0008407 "chaeta morphogenesis"
evidence=IMP] [GO:0006911 "phagocytosis, engulfment" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0007563
"regulation of eclosion" evidence=IMP] [GO:0022416 "chaeta
development" evidence=IMP] InterPro:IPR002691 EMBL:AE013599
GO:GO:0005634 GO:GO:0007411 GO:GO:0045893 GO:GO:0006911
GO:GO:0006351 GO:GO:0003712 GO:GO:0007476 GO:GO:0008407
GO:GO:0070983 GO:GO:0007350 GO:GO:0007563 KO:K15617
PANTHER:PTHR10378 GeneTree:ENSGT00390000005639 UniGene:Dm.6987
GeneID:37837 KEGG:dme:Dmel_CG3924 CTD:37837 FlyBase:FBgn0013764
GenomeRNAi:37837 NextBio:805617 EMBL:BT125015 RefSeq:NP_726403.2
SMR:Q7KVG9 STRING:Q7KVG9 EnsemblMetazoa:FBtr0072192 UCSC:CG3924-RB
InParanoid:Q7KVG9 OMA:GHRELIP Uniprot:Q7KVG9
Length = 596
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 168/218 (77%), Positives = 192/218 (88%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
ESDN WWD+F TEFFEDDA LT+ FCLEDGPKRYTIGRTLIPR+FRSI++GG+++LY+ L
Sbjct: 252 ESDNCWWDSFTTEFFEDDARLTILFCLEDGPKRYTIGRTLIPRFFRSIYEGGVSDLYFQL 311
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KESFHNTSITLDCDQCT++T HGKP TKVC + RLILEF +DD MRIKSWH ++
Sbjct: 312 KHAKESFHNTSITLDCDQCTVITQHGKPFFTKVCADARLILEFMYDDYMRIKSWHMTIKG 371
Query: 121 HRELVPRTIVGMQ---DPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAY 177
HREL+PR+++G DP +L+Q+TKNITR GITNSTLNYLRLCVILEPMQELMSRHKAY
Sbjct: 372 HRELIPRSVIGTSLPPDPMLLDQITKNITRAGITNSTLNYLRLCVILEPMQELMSRHKAY 431
Query: 178 ALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
ALSPRDCLKT LFQKWQRMVAPPGK++ QRP NKRRKR
Sbjct: 432 ALSPRDCLKTTLFQKWQRMVAPPGKKDPQRPPNKRRKR 469
>UNIPROTKB|P70060 [details] [associations]
symbol:ldb1 "LIM domain-binding protein 1" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0030274 "LIM domain binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] InterPro:IPR002691
GO:GO:0007275 GO:GO:0005634 GO:GO:0042803 GO:GO:0045944
GO:GO:0003712 CTD:8861 HOVERGEN:HBG000135 KO:K15617
PANTHER:PTHR10378 EMBL:U74360 EMBL:AB250387 EMBL:BC044043
RefSeq:NP_001080549.1 RefSeq:NP_001090450.1 UniGene:Xl.4461
UniGene:Xl.76023 ProteinModelPortal:P70060 SMR:P70060 GeneID:380241
GeneID:779363 KEGG:xla:380241 KEGG:xla:779363 CTD:779363
Xenbase:XB-GENE-866237 Uniprot:P70060
Length = 375
Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 173/217 (79%), Positives = 192/217 (88%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 48 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 107
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKESFHN ++LDCDQCTMVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 108 KHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 167
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 168 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 227
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
LSPRDCLKT LFQKWQRMVAPP + Q P+ KRRKR
Sbjct: 228 LSPRDCLKTCLFQKWQRMVAPPAEPARQAPS-KRRKR 263
>ZFIN|ZDB-GENE-990415-136 [details] [associations]
symbol:ldb2a "LIM-domain binding factor 2a"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030274 "LIM domain binding" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] InterPro:IPR002691
ZFIN:ZDB-GENE-990415-136 GO:GO:0005634 GO:GO:0003712
PANTHER:PTHR10378 GeneTree:ENSGT00390000005639 EMBL:CU855906
EMBL:CU896556 IPI:IPI01024258 Ensembl:ENSDART00000149571
ArrayExpress:F8W338 Bgee:F8W338 Uniprot:F8W338
Length = 439
Score = 923 (330.0 bits), Expect = 3.0e-95, Sum P(2) = 3.0e-95
Identities = 166/202 (82%), Positives = 185/202 (91%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
ESD+LWWDAFATEFFE+DATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 99 ESDSLWWDAFATEFFEEDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 158
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KESFHN+ IT+DCDQCTMVT HGKPM TKVCTEGRLILEF FDDLMRIK+WHF +RQ
Sbjct: 159 KHSKESFHNSCITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFAFDDLMRIKTWHFNIRQ 218
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+REL+PR+I+ M QDP +LEQL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 219 YRELIPRSILAMHAQDPGVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 278
Query: 179 LSPRDCLKTALFQKWQRMVAPP 200
LSPRDCLKT LFQKWQRMVAPP
Sbjct: 279 LSPRDCLKTCLFQKWQRMVAPP 300
Score = 44 (20.5 bits), Expect = 3.0e-95, Sum P(2) = 3.0e-95
Identities = 17/59 (28%), Positives = 21/59 (35%)
Query: 191 QKWQRMVAPPG-KRESQRPAN-KRRKRXXXXXXXXXXXXXXXXXXXXXX-XXNFSLASQ 246
Q ++ + P K+E R KRRKR NFSLASQ
Sbjct: 305 QNFKTEIFPTNHKKEPTRQTTTKRRKRKNSASSASNSSLGNSAGGKKRSPANNFSLASQ 363
>ZFIN|ZDB-GENE-990415-138 [details] [associations]
symbol:ldb1a "LIM-domain binding factor 1a"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0030274 "LIM domain binding" evidence=IEA;ISS;IDA] [GO:0003712
"transcription cofactor activity" evidence=IEA] [GO:0046983
"protein dimerization activity" evidence=IDA] InterPro:IPR002691
ZFIN:ZDB-GENE-990415-138 GO:GO:0005634 GO:GO:0046983 GO:GO:0003712
GO:GO:0030274 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
EMBL:CU640488 IPI:IPI00509348 Ensembl:ENSDART00000126845
ArrayExpress:F1R491 Bgee:F1R491 Uniprot:F1R491
Length = 375
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 171/217 (78%), Positives = 192/217 (88%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+ DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TEL+Y L
Sbjct: 48 DCDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELFYVL 107
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKESFHN ++LDCDQCTMVT +GKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 108 KHPKESFHNNFVSLDCDQCTMVTQNGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 167
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HRE+VPR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 168 HREVVPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 227
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
LSPRDCLKT LFQKWQRMVAPP + Q P NKRRKR
Sbjct: 228 LSPRDCLKTCLFQKWQRMVAPPAEPARQAP-NKRRKR 263
>ZFIN|ZDB-GENE-990415-135 [details] [associations]
symbol:ldb1b "LIM-domain binding factor 1b"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030274 "LIM domain binding" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] InterPro:IPR002691
ZFIN:ZDB-GENE-990415-135 GO:GO:0005634 GO:GO:0003712
HOVERGEN:HBG000135 KO:K15617 PANTHER:PTHR10378 EMBL:BC110113
IPI:IPI00489118 RefSeq:NP_571388.2 UniGene:Dr.156522
UniGene:Dr.157066 UniGene:Dr.598 ProteinModelPortal:Q2YDQ6
SMR:Q2YDQ6 STRING:Q2YDQ6 GeneID:30576 KEGG:dre:30576 CTD:30576
InParanoid:Q2YDQ6 NextBio:20806946 ArrayExpress:Q2YDQ6
Uniprot:Q2YDQ6
Length = 374
Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
Identities = 171/217 (78%), Positives = 191/217 (88%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNL WDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRS+F+GG TELYY L
Sbjct: 48 ECDNLRWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSVFEGGATELYYVL 107
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKESFHN ++LDCDQCTMVT +GKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 108 KHPKESFHNNFVSLDCDQCTMVTQNGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 167
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 168 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 227
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
LSPRDCLKT LFQKWQRMVAPP + Q P NKRRKR
Sbjct: 228 LSPRDCLKTCLFQKWQRMVAPPAEPARQAP-NKRRKR 263
>UNIPROTKB|F1N4N0 [details] [associations]
symbol:Bt.4553 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060322 "head development" evidence=IEA] [GO:0046985
"positive regulation of hemoglobin biosynthetic process"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045785 "positive regulation of cell adhesion" evidence=IEA]
[GO:0045647 "negative regulation of erythrocyte differentiation"
evidence=IEA] [GO:0043973 "histone H3-K4 acetylation" evidence=IEA]
[GO:0043621 "protein self-association" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA] [GO:0035019
"somatic stem cell maintenance" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0022607 "cellular component assembly" evidence=IEA] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0016055 "Wnt
receptor signaling pathway" evidence=IEA] [GO:0010669 "epithelial
structure maintenance" evidence=IEA] [GO:0009948
"anterior/posterior axis specification" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005911 "cell-cell junction" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0001942 "hair follicle development"
evidence=IEA] [GO:0001702 "gastrulation with mouth forming second"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0000972
"transcription-dependent tethering of RNA polymerase II gene DNA at
nuclear periphery" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] InterPro:IPR002691 GO:GO:0045892 GO:GO:0016055
GO:GO:0045944 GO:GO:0003682 GO:GO:0005911 GO:GO:0005667
GO:GO:0000790 GO:GO:0006366 GO:GO:0001942 GO:GO:0001702
GO:GO:0045785 GO:GO:0003712 GO:GO:0035019 GO:GO:0009948
GO:GO:0001158 GO:GO:0021702 GO:GO:0060322 GO:GO:0010669
GO:GO:0032784 GO:GO:0045647 GO:GO:0046985 PANTHER:PTHR10378
OMA:GSNSPWN GO:GO:0022607 GO:GO:0043973 GO:GO:0000972
GeneTree:ENSGT00390000005639 EMBL:DAAA02058995 EMBL:DAAA02058997
EMBL:DAAA02058996 IPI:IPI00694995 Ensembl:ENSBTAT00000007599
Uniprot:F1N4N0
Length = 467
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 170/218 (77%), Positives = 191/218 (87%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 140 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 199
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKE+FH+ ++LDCDQ +MVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 200 KHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 259
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 260 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 319
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPA-NKRRKR 215
LSPRDCLKT LFQKWQRMVAPPG E R +KRRKR
Sbjct: 320 LSPRDCLKTCLFQKWQRMVAPPGTAEPARQQPSKRRKR 357
>UNIPROTKB|E2RH17 [details] [associations]
symbol:LDB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003712 "transcription
cofactor activity" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 OMA:GSNSPWN
GeneTree:ENSGT00390000005639 EMBL:AAEX03015485
Ensembl:ENSCAFT00000015927 Uniprot:E2RH17
Length = 468
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 170/218 (77%), Positives = 191/218 (87%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 141 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 200
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKE+FH+ ++LDCDQ +MVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 201 KHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 260
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 261 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 320
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPA-NKRRKR 215
LSPRDCLKT LFQKWQRMVAPPG E R +KRRKR
Sbjct: 321 LSPRDCLKTCLFQKWQRMVAPPGTAEPARQQPSKRRKR 358
>UNIPROTKB|Q86U70 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9606
"Homo sapiens" [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0001702 "gastrulation with mouth forming second"
evidence=IEA] [GO:0001942 "hair follicle development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005911
"cell-cell junction" evidence=IEA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0009948
"anterior/posterior axis specification" evidence=IEA] [GO:0010669
"epithelial structure maintenance" evidence=IEA] [GO:0016055 "Wnt
receptor signaling pathway" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0022607 "cellular component
assembly" evidence=IEA] [GO:0035019 "somatic stem cell maintenance"
evidence=IEA] [GO:0043621 "protein self-association" evidence=IEA]
[GO:0045785 "positive regulation of cell adhesion" evidence=IEA]
[GO:0060322 "head development" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=NAS] [GO:0006351
"transcription, DNA-dependent" evidence=NAS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISS] [GO:0030182 "neuron
differentiation" evidence=ISS] [GO:0030274 "LIM domain binding"
evidence=ISS;IPI] [GO:0042803 "protein homodimerization activity"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045647 "negative regulation of erythrocyte differentiation"
evidence=ISS] [GO:0003714 "transcription corepressor activity"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS;IMP]
[GO:0043973 "histone H3-K4 acetylation" evidence=ISS] [GO:0046985
"positive regulation of hemoglobin biosynthetic process"
evidence=ISS] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=ISS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IPI] [GO:0000972
"transcription-dependent tethering of RNA polymerase II gene DNA at
nuclear periphery" evidence=ISS] InterPro:IPR002691 GO:GO:0003714
GO:GO:0045892 GO:GO:0042803 GO:GO:0016055 GO:GO:0030182
GO:GO:0045944 GO:GO:0006351 GO:GO:0003682 GO:GO:0005911
GO:GO:0005667 GO:GO:0000790 GO:GO:0006366 GO:GO:0001942
GO:GO:0001702 GO:GO:0045785 GO:GO:0035019 GO:GO:0009948
GO:GO:0001158 GO:GO:0021702 GO:GO:0060322 GO:GO:0030274
GO:GO:0010669 GO:GO:0032784 GO:GO:0045647 EMBL:AL500527
GO:GO:0046985 CTD:8861 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 KO:K15617 OrthoDB:EOG4XWFXV PANTHER:PTHR10378
EMBL:AF068652 EMBL:AJ243098 EMBL:AB016485 EMBL:AB250384
EMBL:AF064491 EMBL:BT007054 EMBL:AK300588 EMBL:BC000482
EMBL:BC009246 IPI:IPI00428954 IPI:IPI00760574 IPI:IPI00856078
RefSeq:NP_001106878.1 RefSeq:NP_003884.1 UniGene:Hs.454418 PDB:2XJY
PDB:2XJZ PDBsum:2XJY PDBsum:2XJZ ProteinModelPortal:Q86U70
SMR:Q86U70 DIP:DIP-31826N IntAct:Q86U70 MINT:MINT-233462
STRING:Q86U70 PhosphoSite:Q86U70 DMDM:158518615 PaxDb:Q86U70
PRIDE:Q86U70 DNASU:8861 Ensembl:ENST00000361198
Ensembl:ENST00000425280 GeneID:8861 KEGG:hsa:8861 UCSC:uc001kuk.4
UCSC:uc001kul.3 GeneCards:GC10M103857 H-InvDB:HIX0009148
HGNC:HGNC:6532 HPA:HPA034488 MIM:603451 neXtProt:NX_Q86U70
PharmGKB:PA30316 InParanoid:Q86U70 OMA:GSNSPWN
EvolutionaryTrace:Q86U70 GenomeRNAi:8861 NextBio:33273 Bgee:Q86U70
CleanEx:HS_LDB1 Genevestigator:Q86U70 GermOnline:ENSG00000198728
GO:GO:0022607 GO:GO:0043973 GO:GO:0000972 Uniprot:Q86U70
Length = 411
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 169/217 (77%), Positives = 192/217 (88%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 84 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 143
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKE+FH+ ++LDCDQ +MVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 144 KHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 203
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 204 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 263
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
LSPRDCLKT LFQKWQRMVAPP + Q+P+ KRRKR
Sbjct: 264 LSPRDCLKTCLFQKWQRMVAPPAEPTRQQPS-KRRKR 299
>UNIPROTKB|F2Z5G6 [details] [associations]
symbol:LDB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060322 "head development" evidence=IEA] [GO:0046985
"positive regulation of hemoglobin biosynthetic process"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045785 "positive regulation of cell adhesion" evidence=IEA]
[GO:0045647 "negative regulation of erythrocyte differentiation"
evidence=IEA] [GO:0043973 "histone H3-K4 acetylation" evidence=IEA]
[GO:0043621 "protein self-association" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA] [GO:0035019
"somatic stem cell maintenance" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0022607 "cellular component assembly" evidence=IEA] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0016055 "Wnt
receptor signaling pathway" evidence=IEA] [GO:0010669 "epithelial
structure maintenance" evidence=IEA] [GO:0009948
"anterior/posterior axis specification" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005911 "cell-cell junction" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0001942 "hair follicle development"
evidence=IEA] [GO:0001702 "gastrulation with mouth forming second"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0000972
"transcription-dependent tethering of RNA polymerase II gene DNA at
nuclear periphery" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] InterPro:IPR002691 GO:GO:0045892 GO:GO:0016055
GO:GO:0045944 GO:GO:0003682 GO:GO:0005911 GO:GO:0005667
GO:GO:0000790 GO:GO:0006366 GO:GO:0001942 GO:GO:0001702
GO:GO:0045785 GO:GO:0003712 GO:GO:0035019 GO:GO:0009948
GO:GO:0001158 GO:GO:0021702 GO:GO:0060322 GO:GO:0010669
GO:GO:0032784 GO:GO:0045647 GO:GO:0046985 PANTHER:PTHR10378
OMA:GSNSPWN GO:GO:0022607 GO:GO:0043973 GO:GO:0000972
GeneTree:ENSGT00390000005639 EMBL:CT737175
ProteinModelPortal:F2Z5G6 SMR:F2Z5G6 Ensembl:ENSSSCT00000011567
Uniprot:F2Z5G6
Length = 373
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 169/217 (77%), Positives = 192/217 (88%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 48 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 107
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKE+FH+ ++LDCDQ +MVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 108 KHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 167
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 168 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 227
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
LSPRDCLKT LFQKWQRMVAPP + Q+P+ KRRKR
Sbjct: 228 LSPRDCLKTCLFQKWQRMVAPPAEPARQQPS-KRRKR 263
>MGI|MGI:894762 [details] [associations]
symbol:Ldb1 "LIM domain binding 1" species:10090 "Mus
musculus" [GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000972
"transcription-dependent tethering of RNA polymerase II gene DNA at
nuclear periphery" evidence=IMP] [GO:0000989 "transcription factor
binding transcription factor activity" evidence=IPI] [GO:0001102
"RNA polymerase II activating transcription factor binding"
evidence=ISO] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IDA] [GO:0001702 "gastrulation with mouth forming second"
evidence=IMP] [GO:0001942 "hair follicle development" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667 "transcription
factor complex" evidence=ISO] [GO:0005911 "cell-cell junction"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0009948 "anterior/posterior axis
specification" evidence=IMP] [GO:0010669 "epithelial structure
maintenance" evidence=IGI] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0021549 "cerebellum development" evidence=IMP] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=IMP]
[GO:0022607 "cellular component assembly" evidence=IGI] [GO:0030274
"LIM domain binding" evidence=ISO;IDA;IPI] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IMP]
[GO:0035019 "somatic stem cell maintenance" evidence=IGI]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0043234 "protein complex" evidence=IDA;IPI] [GO:0043621
"protein self-association" evidence=IPI] [GO:0043973 "histone H3-K4
acetylation" evidence=IMP] [GO:0044451 "nucleoplasm part"
evidence=IDA] [GO:0045647 "negative regulation of erythrocyte
differentiation" evidence=IMP] [GO:0045785 "positive regulation of
cell adhesion" evidence=IGI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO;IGI;IMP] [GO:0046985 "positive regulation of
hemoglobin biosynthetic process" evidence=IMP] [GO:0060319
"primitive erythrocyte differentiation" evidence=TAS] [GO:0060322
"head development" evidence=IGI] InterPro:IPR002691 MGI:MGI:894762
GO:GO:0045892 GO:GO:0043234 GO:GO:0042803 GO:GO:0016055
GO:GO:0045944 GO:GO:0003682 GO:GO:0005911 GO:GO:0005667
GO:GO:0000790 GO:GO:0006366 GO:GO:0001942 GO:GO:0001702
GO:GO:0045785 GO:GO:0003712 GO:GO:0035019 GO:GO:0009948
GO:GO:0001158 GO:GO:0000989 GO:GO:0021702 GO:GO:0060322
GO:GO:0030274 GO:GO:0010669 GO:GO:0032784 GO:GO:0060319
GO:GO:0045647 PDB:2L6Y PDB:2L6Z PDBsum:2L6Y PDBsum:2L6Z
GO:GO:0046985 CTD:8861 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 KO:K15617 OrthoDB:EOG4XWFXV PANTHER:PTHR10378
OMA:GSNSPWN GO:GO:0022607 GO:GO:0043973 GO:GO:0000972 EMBL:U70375
EMBL:U69270 EMBL:U89488 EMBL:AF030333 EMBL:AF024524 EMBL:AB250383
EMBL:BC013624 IPI:IPI00111789 IPI:IPI00624850 IPI:IPI00762229
RefSeq:NP_001106879.1 RefSeq:NP_034827.1 UniGene:Mm.327442 PDB:1J2O
PDB:1M3V PDB:1RUT PDB:2JTN PDB:2LXD PDBsum:1J2O PDBsum:1M3V
PDBsum:1RUT PDBsum:2JTN PDBsum:2LXD ProteinModelPortal:P70662
SMR:P70662 IntAct:P70662 MINT:MINT-2779250 STRING:P70662
PhosphoSite:P70662 PRIDE:P70662 DNASU:16825
Ensembl:ENSMUST00000026252 Ensembl:ENSMUST00000056931
Ensembl:ENSMUST00000137771 Ensembl:ENSMUST00000156585 GeneID:16825
KEGG:mmu:16825 UCSC:uc008hrz.1 UCSC:uc008hsa.1 UCSC:uc012bmr.1
GeneTree:ENSGT00390000005639 InParanoid:P70662 ChiTaRS:LDB1
EvolutionaryTrace:P70662 NextBio:290724 Bgee:P70662 CleanEx:MM_LDB1
Genevestigator:P70662 GermOnline:ENSMUSG00000025223 GO:GO:0044451
Uniprot:P70662
Length = 411
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 169/217 (77%), Positives = 192/217 (88%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 84 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 143
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKE+FH+ ++LDCDQ +MVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 144 KHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 203
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 204 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 263
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
LSPRDCLKT LFQKWQRMVAPP + Q+P+ KRRKR
Sbjct: 264 LSPRDCLKTCLFQKWQRMVAPPAEPARQQPS-KRRKR 299
>RGD|1310359 [details] [associations]
symbol:Ldb1 "LIM domain binding 1" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA;ISO]
[GO:0000972 "transcription-dependent tethering of RNA polymerase II
gene DNA at nuclear periphery" evidence=IEA;ISO] [GO:0000989
"transcription factor binding transcription factor activity"
evidence=ISO] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA;ISO] [GO:0001158
"enhancer sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001702 "gastrulation with mouth forming second"
evidence=IEA;ISO] [GO:0001942 "hair follicle development"
evidence=IEA;ISO] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005667 "transcription factor complex"
evidence=IEA;ISO] [GO:0005911 "cell-cell junction"
evidence=IEA;ISO] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;ISO] [GO:0009948 "anterior/posterior axis
specification" evidence=IEA;ISO] [GO:0010669 "epithelial structure
maintenance" evidence=IEA;ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IEA;ISO] [GO:0021549 "cerebellum development"
evidence=ISO] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA;ISO] [GO:0022607 "cellular component
assembly" evidence=IEA;ISO] [GO:0030274 "LIM domain binding"
evidence=IEA;ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA;ISO] [GO:0035019 "somatic
stem cell maintenance" evidence=IEA;ISO] [GO:0042803 "protein
homodimerization activity" evidence=IEA;ISO] [GO:0043234 "protein
complex" evidence=ISO] [GO:0043621 "protein self-association"
evidence=IEA;ISO] [GO:0043973 "histone H3-K4 acetylation"
evidence=IEA;ISO] [GO:0044451 "nucleoplasm part" evidence=ISO]
[GO:0045647 "negative regulation of erythrocyte differentiation"
evidence=IEA;ISO] [GO:0045785 "positive regulation of cell
adhesion" evidence=IEA;ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA;ISO] [GO:0046985 "positive regulation of
hemoglobin biosynthetic process" evidence=IEA;ISO] [GO:0060322
"head development" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=ISO] InterPro:IPR002691 RGD:1310359 GO:GO:0005634
GO:GO:0003712 EMBL:CH473986 CTD:8861 KO:K15617 PANTHER:PTHR10378
GeneTree:ENSGT00390000005639 IPI:IPI00951331 RefSeq:NP_001101071.1
UniGene:Rn.102427 Ensembl:ENSRNOT00000040904 GeneID:309447
KEGG:rno:309447 UCSC:RGD:1310359 NextBio:660792 Uniprot:D3ZT89
Length = 375
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 169/217 (77%), Positives = 192/217 (88%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 48 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 107
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KHPKE+FH+ ++LDCDQ +MVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 108 KHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 167
Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
HREL+PR+I+ M QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 168 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 227
Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
LSPRDCLKT LFQKWQRMVAPP + Q+P+ KRRKR
Sbjct: 228 LSPRDCLKTCLFQKWQRMVAPPAEPARQQPS-KRRKR 263
>ZFIN|ZDB-GENE-990415-137 [details] [associations]
symbol:ldb2b "LIM-domain binding factor 2b"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030274 "LIM domain binding" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] InterPro:IPR002691
ZFIN:ZDB-GENE-990415-137 GO:GO:0005634 GO:GO:0003712 HSSP:P70662
eggNOG:NOG282114 HOGENOM:HOG000030908 HOVERGEN:HBG000135
OrthoDB:EOG4XWFXV PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
EMBL:BX908795 EMBL:AF031377 EMBL:BC090063 IPI:IPI00501946
RefSeq:NP_571390.1 UniGene:Dr.75824 SMR:O73714
Ensembl:ENSDART00000043556 GeneID:30578 KEGG:dre:30578 CTD:30578
InParanoid:O73714 NextBio:20806948 Uniprot:O73714
Length = 384
Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
Identities = 143/202 (70%), Positives = 167/202 (82%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+ D LWWDAF TEFFE+DATLTL+FCLE+GPK YTIGRTLIPRYF S+F+GG+ EL++ L
Sbjct: 45 DCDILWWDAFCTEFFEEDATLTLSFCLEEGPKTYTIGRTLIPRYFSSLFEGGVYELFFEL 104
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
K KESF+N++IT+D CTM T HGKP TKVCTEGRLIL FTFDDLMRIK+WHF +
Sbjct: 105 KQTKESFNNSTITVDSHHCTMTTQHGKPTFTKVCTEGRLILVFTFDDLMRIKTWHFTITH 164
Query: 121 HRELVPRTI--VGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
+ EL+PR++ V QDP +EQL+KNI+R G+TN TLNYLRLCVILEPMQELMSRHK Y
Sbjct: 165 YSELIPRSVLAVNAQDPGAVEQLSKNISRVGLTNLTLNYLRLCVILEPMQELMSRHKTYG 224
Query: 179 LSPRDCLKTALFQKWQRMVAPP 200
LSPRDCLKT LF +WQRM PP
Sbjct: 225 LSPRDCLKTCLFHQWQRMTTPP 246
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 68/133 (51%), Positives = 75/133 (56%)
Query: 130 VGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTAL 189
V QDP +EQL+KNI+R G+TN TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT L
Sbjct: 176 VNAQDPGAVEQLSKNISRVGLTNLTLNYLRLCVILEPMQELMSRHKTYGLSPRDCLKTCL 235
Query: 190 FQKWQRMVAPP-G---------------KRESQRPANKRRKRXXXXXXXXXXXXXXXXXX 233
F +WQRM PP G K E +P KRR+R
Sbjct: 236 FHQWQRMTTPPVGPSPNFKTEIFPSNPKKSEQAKPPAKRRRRRNSAGSASNSSTGNSKKR 295
Query: 234 XXXXXXNFSLASQ 246
NFSL SQ
Sbjct: 296 SPAN--NFSLPSQ 306
>UNIPROTKB|H0YA09 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 HGNC:HGNC:6533 ChiTaRS:LDB2
EMBL:AC005690 EMBL:AC097515 EMBL:AC104656 EMBL:AC105353
EMBL:AC106894 Ensembl:ENST00000507464 Uniprot:H0YA09
Length = 294
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 147/218 (67%), Positives = 168/218 (77%)
Query: 36 IGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCT 95
IGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVCT
Sbjct: 2 IGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCT 61
Query: 96 EGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITNS 153
EGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +L+QL+KNITR G+TN
Sbjct: 62 EGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNF 121
Query: 154 TLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRR 213
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP +++P KRR
Sbjct: 122 TLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPP--EPTRQPTTKRR 179
Query: 214 KRXXXXXXXXXXXXXXXXXXXXX----XXXNFSLASQV 247
KR N SL+SQV
Sbjct: 180 KRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQV 217
>UNIPROTKB|D6RAT1 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0001942 "hair follicle development" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0010669
"epithelial structure maintenance" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IEA] [GO:0035019 "somatic stem cell
maintenance" evidence=IEA] [GO:0044089 "positive regulation of
cellular component biogenesis" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR002691 GO:GO:0045944 GO:GO:0005667
GO:GO:0001942 GO:GO:0003712 GO:GO:0035019 GO:GO:0010669
HOGENOM:HOG000030908 PANTHER:PTHR10378 HGNC:HGNC:6533 ChiTaRS:LDB2
GO:GO:0044089 EMBL:AC005690 EMBL:AC097515 EMBL:AC104656
EMBL:AC105353 EMBL:AC106894 IPI:IPI00965897 Ensembl:ENST00000506732
ArrayExpress:D6RAT1 Bgee:D6RAT1 Uniprot:D6RAT1
Length = 164
Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 116/144 (80%), Positives = 134/144 (93%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 21 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 80
Query: 61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 81 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 140
Query: 121 HRELVPRTIVGM--QDPSMLEQLT 142
+RELVPR+I+ M QDP +L+QL+
Sbjct: 141 YRELVPRSILAMHAQDPQVLDQLS 164
>UNIPROTKB|I3LLH6 [details] [associations]
symbol:LDB2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0044089 "positive
regulation of cellular component biogenesis" evidence=IEA]
[GO:0035019 "somatic stem cell maintenance" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0010669 "epithelial
structure maintenance" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0001942 "hair follicle
development" evidence=IEA] [GO:0030274 "LIM domain binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] InterPro:IPR002691 GO:GO:0045944 GO:GO:0005667
GO:GO:0001942 GO:GO:0003712 GO:GO:0035019 GO:GO:0010669
PANTHER:PTHR10378 GeneTree:ENSGT00390000005639 OMA:LGNSSPW
GO:GO:0044089 EMBL:CU464164 EMBL:CU861948 EMBL:CU928550
Ensembl:ENSSSCT00000025105 Uniprot:I3LLH6
Length = 294
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 123/218 (56%), Positives = 153/218 (70%)
Query: 36 IGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCT 95
IGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQC MVT HGKPM TKVCT
Sbjct: 1 IGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVCT 60
Query: 96 EGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITNS 153
EGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +L+QL+KNITR G+TN
Sbjct: 61 EGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNF 120
Query: 154 TLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRR 213
TLNYLR+CV L+ Q +M+R + +S D + + LF KW R V P + +++P KRR
Sbjct: 121 TLNYLRICVYLKKRQLMMTRSNTFRISESDVMDSCLFMKWIRFVTPSAE-PTRQPTTKRR 179
Query: 214 KRXXXXXXXXXXXXXXXXXXXXXX----XXNFSLASQV 247
KR N SL+SQV
Sbjct: 180 KRKNSTSSTSNSSAGNNANSTGSKKKTPAANLSLSSQV 217
>UNIPROTKB|B7Z2D3 [details] [associations]
symbol:LDB2 "cDNA FLJ52487, highly similar to LIM
domain-binding protein 2" species:9606 "Homo sapiens" [GO:0003712
"transcription cofactor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030274 "LIM domain binding"
evidence=IEA] InterPro:IPR002691 GO:GO:0005634 GO:GO:0003712
HOGENOM:HOG000030908 HOVERGEN:HBG000135 PANTHER:PTHR10378
UniGene:Hs.714330 HGNC:HGNC:6533 ChiTaRS:LDB2 EMBL:AC005690
EMBL:AC097515 EMBL:AC104656 EMBL:AC105353 EMBL:AC106894
EMBL:AK294588 IPI:IPI00922054 STRING:B7Z2D3 Ensembl:ENST00000503178
UCSC:uc011bxi.2 Uniprot:B7Z2D3
Length = 189
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 113/173 (65%), Positives = 127/173 (73%)
Query: 81 MVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSML 138
MVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +L
Sbjct: 1 MVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVL 60
Query: 139 EQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTALFQKWQRMVA 198
+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVA
Sbjct: 61 DQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVA 120
Query: 199 PPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXX----XXXNFSLASQV 247
PP + +++P KRRKR N SL+SQV
Sbjct: 121 PPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQV 172
>UNIPROTKB|Q8I4H8 [details] [associations]
symbol:ldb-1 "Protein LDB-1, isoform b" species:6239
"Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040010 GO:GO:0040011
GO:GO:0003700 GO:GO:0007416 GO:GO:0040035 GO:GO:0003712
GO:GO:0040025 GO:GO:0034504 GO:GO:0007638 EMBL:Z81017 HSSP:P70662
KO:K15617 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
UniGene:Cel.17941 GeneID:181292 KEGG:cel:CELE_F58A3.1 CTD:181292
NextBio:913316 PIR:T22888 RefSeq:NP_509845.1
ProteinModelPortal:Q8I4H8 SMR:Q8I4H8 STRING:Q8I4H8 PRIDE:Q8I4H8
EnsemblMetazoa:F58A3.1b UCSC:F58A3.1c WormBase:F58A3.1b
HOGENOM:HOG000021159 ArrayExpress:Q8I4H8 Uniprot:Q8I4H8
Length = 578
Score = 294 (108.6 bits), Expect = 2.8e-25, P = 2.8e-25
Identities = 83/222 (37%), Positives = 117/222 (52%)
Query: 1 ESDNL-WWDAFATEFFEDDATLTLTFCLED----GPKRYTIGRTLIPRYFRSIFDGGITE 55
E+D WWDAF+ EFF+DD L E +RY I R IP++FRSIFD G+ E
Sbjct: 69 ENDQQQWWDAFSHEFFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRE 128
Query: 56 LYYNLKHPKE--SFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFT-FDDLM--R 110
L Y L+ P + N S + + +T + + +V TEG+L +EF FD++M R
Sbjct: 129 LQYVLRGPSRECTLANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYR 188
Query: 111 IKSWHFAVRQHRELV--PRTI---VGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILE 165
IK+W +++ E V T V Q+P EQ +N R G ST N + + IL+
Sbjct: 189 IKAWTLELKRSNEFVYNQNTADYRVEAQNP---EQ--ENKPRMGFFKSTFNLMTMLKILD 243
Query: 166 PMQELMSRHK-AYALSPRDCLKTALFQKWQRMVAPPGKRESQ 206
PMQ +MS K A A++PR+ +K LFQ Q V R+ Q
Sbjct: 244 PMQSIMSSAKSAPAITPREVMKRTLFQHHQ--VRQQNMRQQQ 283
Score = 132 (51.5 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 45/132 (34%), Positives = 68/132 (51%)
Query: 105 FDDLM--RIKSWHFAVRQHRELV--PRTI---VGMQDPSMLEQLTKNITRQGITNSTLNY 157
FD++M RIK+W +++ E V T V Q+P EQ +N R G ST N
Sbjct: 181 FDEVMNYRIKAWTLELKRSNEFVYNQNTADYRVEAQNP---EQ--ENKPRMGFFKSTFNL 235
Query: 158 LRLCVILEPMQELMSRHK-AYALSPRDCLKTALFQKWQ-------------RMVAPPGKR 203
+ + IL+PMQ +MS K A A++PR+ +K LFQ Q +M+ P +
Sbjct: 236 MTMLKILDPMQSIMSSAKSAPAITPREVMKRTLFQHHQVRQQNMRQQQLNQQMMIPAPEP 295
Query: 204 ESQRPANKRRKR 215
E +PA KR+++
Sbjct: 296 EKPKPARKRQRK 307
>UNIPROTKB|G5EEL0 [details] [associations]
symbol:ldb-1 "Protein LDB-1, isoform a" species:6239
"Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040010 GO:GO:0040011
GO:GO:0003700 GO:GO:0007416 GO:GO:0040035 GO:GO:0003712
GO:GO:0040025 GO:GO:0034504 GO:GO:0007638 EMBL:Z81017 HSSP:P70662
KO:K15617 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
EMBL:U80220 PIR:T22885 RefSeq:NP_509846.1 UniGene:Cel.17941
ProteinModelPortal:G5EEL0 SMR:G5EEL0 EnsemblMetazoa:F58A3.1a.1
EnsemblMetazoa:F58A3.1a.2 GeneID:181292 KEGG:cel:CELE_F58A3.1
CTD:181292 WormBase:F58A3.1a NextBio:913316 Uniprot:G5EEL0
Length = 592
Score = 294 (108.6 bits), Expect = 3.0e-25, P = 3.0e-25
Identities = 83/222 (37%), Positives = 117/222 (52%)
Query: 1 ESDNL-WWDAFATEFFEDDATLTLTFCLED----GPKRYTIGRTLIPRYFRSIFDGGITE 55
E+D WWDAF+ EFF+DD L E +RY I R IP++FRSIFD G+ E
Sbjct: 83 ENDQQQWWDAFSHEFFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRE 142
Query: 56 LYYNLKHPKE--SFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFT-FDDLM--R 110
L Y L+ P + N S + + +T + + +V TEG+L +EF FD++M R
Sbjct: 143 LQYVLRGPSRECTLANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYR 202
Query: 111 IKSWHFAVRQHRELV--PRTI---VGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILE 165
IK+W +++ E V T V Q+P EQ +N R G ST N + + IL+
Sbjct: 203 IKAWTLELKRSNEFVYNQNTADYRVEAQNP---EQ--ENKPRMGFFKSTFNLMTMLKILD 257
Query: 166 PMQELMSRHK-AYALSPRDCLKTALFQKWQRMVAPPGKRESQ 206
PMQ +MS K A A++PR+ +K LFQ Q V R+ Q
Sbjct: 258 PMQSIMSSAKSAPAITPREVMKRTLFQHHQ--VRQQNMRQQQ 297
Score = 132 (51.5 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 45/132 (34%), Positives = 68/132 (51%)
Query: 105 FDDLM--RIKSWHFAVRQHRELV--PRTI---VGMQDPSMLEQLTKNITRQGITNSTLNY 157
FD++M RIK+W +++ E V T V Q+P EQ +N R G ST N
Sbjct: 195 FDEVMNYRIKAWTLELKRSNEFVYNQNTADYRVEAQNP---EQ--ENKPRMGFFKSTFNL 249
Query: 158 LRLCVILEPMQELMSRHK-AYALSPRDCLKTALFQKWQ-------------RMVAPPGKR 203
+ + IL+PMQ +MS K A A++PR+ +K LFQ Q +M+ P +
Sbjct: 250 MTMLKILDPMQSIMSSAKSAPAITPREVMKRTLFQHHQVRQQNMRQQQLNQQMMIPAPEP 309
Query: 204 ESQRPANKRRKR 215
E +PA KR+++
Sbjct: 310 EKPKPARKRQRK 321
>WB|WBGene00002261 [details] [associations]
symbol:ldb-1 species:6239 "Caenorhabditis elegans"
[GO:0030274 "LIM domain binding" evidence=IEA;IPI] [GO:0003712
"transcription cofactor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0040011 "locomotion" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0007638
"mechanosensory behavior" evidence=IMP] [GO:0040025 "vulval
development" evidence=IMP] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IDA] [GO:0007416
"synapse assembly" evidence=IMP] [GO:0034504 "protein localization
to nucleus" evidence=IMP] InterPro:IPR002691 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040010 GO:GO:0040011
GO:GO:0003700 GO:GO:0007416 GO:GO:0040035 GO:GO:0003712
GO:GO:0040025 GO:GO:0034504 GO:GO:0007638 EMBL:Z81017 HSSP:P70662
KO:K15617 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
UniGene:Cel.17941 GeneID:181292 KEGG:cel:CELE_F58A3.1 CTD:181292
NextBio:913316 UCSC:F58A3.1c HOGENOM:HOG000021159 PIR:T22890
RefSeq:NP_509844.3 ProteinModelPortal:Q9U3E2 SMR:Q9U3E2
IntAct:Q9U3E2 STRING:Q9U3E2 EnsemblMetazoa:F58A3.1c
WormBase:F58A3.1c InParanoid:Q9U3E2 OMA:NSAMITG ArrayExpress:Q9U3E2
Uniprot:Q9U3E2
Length = 629
Score = 294 (108.6 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 83/222 (37%), Positives = 117/222 (52%)
Query: 1 ESDNL-WWDAFATEFFEDDATLTLTFCLED----GPKRYTIGRTLIPRYFRSIFDGGITE 55
E+D WWDAF+ EFF+DD L E +RY I R IP++FRSIFD G+ E
Sbjct: 120 ENDQQQWWDAFSHEFFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRE 179
Query: 56 LYYNLKHPKE--SFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFT-FDDLM--R 110
L Y L+ P + N S + + +T + + +V TEG+L +EF FD++M R
Sbjct: 180 LQYVLRGPSRECTLANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYR 239
Query: 111 IKSWHFAVRQHRELV--PRTI---VGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILE 165
IK+W +++ E V T V Q+P EQ +N R G ST N + + IL+
Sbjct: 240 IKAWTLELKRSNEFVYNQNTADYRVEAQNP---EQ--ENKPRMGFFKSTFNLMTMLKILD 294
Query: 166 PMQELMSRHK-AYALSPRDCLKTALFQKWQRMVAPPGKRESQ 206
PMQ +MS K A A++PR+ +K LFQ Q V R+ Q
Sbjct: 295 PMQSIMSSAKSAPAITPREVMKRTLFQHHQ--VRQQNMRQQQ 334
Score = 132 (51.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 45/132 (34%), Positives = 68/132 (51%)
Query: 105 FDDLM--RIKSWHFAVRQHRELV--PRTI---VGMQDPSMLEQLTKNITRQGITNSTLNY 157
FD++M RIK+W +++ E V T V Q+P EQ +N R G ST N
Sbjct: 232 FDEVMNYRIKAWTLELKRSNEFVYNQNTADYRVEAQNP---EQ--ENKPRMGFFKSTFNL 286
Query: 158 LRLCVILEPMQELMSRHK-AYALSPRDCLKTALFQKWQ-------------RMVAPPGKR 203
+ + IL+PMQ +MS K A A++PR+ +K LFQ Q +M+ P +
Sbjct: 287 MTMLKILDPMQSIMSSAKSAPAITPREVMKRTLFQHHQVRQQNMRQQQLNQQMMIPAPEP 346
Query: 204 ESQRPANKRRKR 215
E +PA KR+++
Sbjct: 347 EKPKPARKRQRK 358
>UNIPROTKB|Q9U3E2 [details] [associations]
symbol:ldb-1 "Protein LDB-1, isoform c" species:6239
"Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040010 GO:GO:0040011
GO:GO:0003700 GO:GO:0007416 GO:GO:0040035 GO:GO:0003712
GO:GO:0040025 GO:GO:0034504 GO:GO:0007638 EMBL:Z81017 HSSP:P70662
KO:K15617 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
UniGene:Cel.17941 GeneID:181292 KEGG:cel:CELE_F58A3.1 CTD:181292
NextBio:913316 UCSC:F58A3.1c HOGENOM:HOG000021159 PIR:T22890
RefSeq:NP_509844.3 ProteinModelPortal:Q9U3E2 SMR:Q9U3E2
IntAct:Q9U3E2 STRING:Q9U3E2 EnsemblMetazoa:F58A3.1c
WormBase:F58A3.1c InParanoid:Q9U3E2 OMA:NSAMITG ArrayExpress:Q9U3E2
Uniprot:Q9U3E2
Length = 629
Score = 294 (108.6 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 83/222 (37%), Positives = 117/222 (52%)
Query: 1 ESDNL-WWDAFATEFFEDDATLTLTFCLED----GPKRYTIGRTLIPRYFRSIFDGGITE 55
E+D WWDAF+ EFF+DD L E +RY I R IP++FRSIFD G+ E
Sbjct: 120 ENDQQQWWDAFSHEFFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRE 179
Query: 56 LYYNLKHPKE--SFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFT-FDDLM--R 110
L Y L+ P + N S + + +T + + +V TEG+L +EF FD++M R
Sbjct: 180 LQYVLRGPSRECTLANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYR 239
Query: 111 IKSWHFAVRQHRELV--PRTI---VGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILE 165
IK+W +++ E V T V Q+P EQ +N R G ST N + + IL+
Sbjct: 240 IKAWTLELKRSNEFVYNQNTADYRVEAQNP---EQ--ENKPRMGFFKSTFNLMTMLKILD 294
Query: 166 PMQELMSRHK-AYALSPRDCLKTALFQKWQRMVAPPGKRESQ 206
PMQ +MS K A A++PR+ +K LFQ Q V R+ Q
Sbjct: 295 PMQSIMSSAKSAPAITPREVMKRTLFQHHQ--VRQQNMRQQQ 334
Score = 132 (51.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 45/132 (34%), Positives = 68/132 (51%)
Query: 105 FDDLM--RIKSWHFAVRQHRELV--PRTI---VGMQDPSMLEQLTKNITRQGITNSTLNY 157
FD++M RIK+W +++ E V T V Q+P EQ +N R G ST N
Sbjct: 232 FDEVMNYRIKAWTLELKRSNEFVYNQNTADYRVEAQNP---EQ--ENKPRMGFFKSTFNL 286
Query: 158 LRLCVILEPMQELMSRHK-AYALSPRDCLKTALFQKWQ-------------RMVAPPGKR 203
+ + IL+PMQ +MS K A A++PR+ +K LFQ Q +M+ P +
Sbjct: 287 MTMLKILDPMQSIMSSAKSAPAITPREVMKRTLFQHHQVRQQNMRQQQLNQQMMIPAPEP 346
Query: 204 ESQRPANKRRKR 215
E +PA KR+++
Sbjct: 347 EKPKPARKRQRK 358
>UNIPROTKB|E7EX95 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 HGNC:HGNC:6533 ChiTaRS:LDB2
EMBL:AC005690 EMBL:AC097515 EMBL:AC104656 EMBL:AC105353
EMBL:AC106894 IPI:IPI00967706 Ensembl:ENST00000508918
ArrayExpress:E7EX95 Bgee:E7EX95 Uniprot:E7EX95
Length = 110
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 32/36 (88%), Positives = 35/36 (97%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTI 36
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY +
Sbjct: 45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYIV 80
>UNIPROTKB|E9PGU0 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 HGNC:HGNC:6533 ChiTaRS:LDB2
EMBL:AC005690 EMBL:AC097515 EMBL:AC104656 EMBL:AC105353
EMBL:AC106894 IPI:IPI00965057 Ensembl:ENST00000512345
ArrayExpress:E9PGU0 Bgee:E9PGU0 Uniprot:E9PGU0
Length = 106
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 32/34 (94%), Positives = 34/34 (100%)
Query: 1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 34
+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.136 0.426 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 247 223 0.00098 112 3 11 22 0.47 32
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 41
No. of states in DFA: 611 (65 KB)
Total size of DFA: 203 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.00u 0.11s 21.11t Elapsed: 00:00:01
Total cpu time: 21.01u 0.11s 21.12t Elapsed: 00:00:01
Start: Thu Aug 15 17:18:15 2013 End: Thu Aug 15 17:18:16 2013