RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2753
(247 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 2e-08
Identities = 44/255 (17%), Positives = 77/255 (30%), Gaps = 90/255 (35%)
Query: 7 WDAFATEFFEDDATLTLTFCLEDGPKRYTI------GRTLIPRY----FRSIFDG----- 51
W+ A F+D ++ + + P TI G+ + Y F +I DG
Sbjct: 1646 WNR-ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704
Query: 52 ----GITE--LYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLIL---- 101
I E Y + K T T Q + K + ++G +
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFT----QPALTL-MEKAAFEDLKSKGLIPADATF 1759
Query: 102 ------EFT----------FDDLMRIKSWHFAVRQHR-----ELVPRTIVGMQDPSM--- 137
E+ + L+ + V R VPR +G + M
Sbjct: 1760 AGHSLGEYAALASLADVMSIESLVEV------VFY-RGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 138 -------------LEQLTKNITRQGITNSTL---NYLRLCVILEPMQELMSRHKAYALSP 181
L+ + + + ++ T + NY +E Q + + AL
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKR--TGWLVEIVNYN-----VENQQYVAAGDLR-AL-- 1862
Query: 182 RDCLKTAL-FQKWQR 195
D + L F K Q+
Sbjct: 1863 -DTVTNVLNFIKLQK 1876
Score = 48.5 bits (115), Expect = 1e-06
Identities = 53/295 (17%), Positives = 85/295 (28%), Gaps = 120/295 (40%)
Query: 2 SDNLWWD----------AFATEFFEDDATL--TLTFCLEDGPKRYTIGRTLI-------- 41
+ + +++ + + A L D K +T G ++
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 42 -P--RYFRS-------IFDGGITEL--YYNL-----KHPKESFHNTSITLDCDQCTMVTH 84
P Y S I G+ +L Y P E T
Sbjct: 225 TPDKDYLLSIPISCPLI---GVIQLAHYVVTAKLLGFTPGELRSYLK---------GATG 272
Query: 85 HGKPMLTKVCTEG-----------RLILEFTFDDLMRIKSWHFAVRQHRELVPRTIV--- 130
H + ++T V R + F + VR + E P T +
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLF--------FI-GVRCY-EAYPNTSLPPS 322
Query: 131 GMQD--------PS-ML-------EQLTKNITRQGITNSTL-----------NYLRLCVI 163
++D PS ML EQ+ + + TNS L N + V+
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK---TNSHLPAGKQVEISLVNGAKNLVV 379
Query: 164 LEPMQELMSRHKAYALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGS 218
P Q L L L ++ AP G +S+ P ++ RK K S
Sbjct: 380 SGPPQSLYG------------LNLTL----RKAKAPSGLDQSRIPFSE-RKLKFS 417
Score = 36.2 bits (83), Expect = 0.009
Identities = 30/236 (12%), Positives = 63/236 (26%), Gaps = 72/236 (30%)
Query: 18 DATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNT------S 71
DA T L G + + L+P T ++ +E F+
Sbjct: 2 DAYSTRPLTLSHGSLEHVL---LVP-----------TASFFIASQLQEQFNKILPEPTEG 47
Query: 72 ITLDCDQCT----------MVTH--------HGKPMLTKVCTE-------GR----LILE 102
D + T V+ +L TE G L +
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 103 FTFDDLMRIKSWHFAVR---QHRELVPRTIVGMQDPSMLEQLTKNITR-------QGITN 152
++ + ++ R + R + ++ + + + QG T+
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 153 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTALFQKWQRMVAPPGKRESQRP 208
Y +EL ++ Y + D +K + + ++ E
Sbjct: 168 D---YF---------EELRDLYQTYHVLVGDLIKFS-AETLSELIRTTLDAEKVFT 210
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 9e-04
Identities = 45/224 (20%), Positives = 83/224 (37%), Gaps = 50/224 (22%)
Query: 5 LWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIP-RYF-------------RSIFD 50
+W+D ++ L +E PK TI IP Y RSI D
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS---IPSIYLELKVKLENEYALHRSIVD 451
Query: 51 GGITELYYNLKHPKESFHNTSITLDC-DQ--CTMVTHHGKPM-LTKVCTEGRLI-LEFTF 105
+YN+ ++F + + DQ + + HH K + + T R++ L+F F
Sbjct: 452 ------HYNI---PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 106 DDLMRIKSWHFAVRQHRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILE 165
+ K +R H + + L+QL + I ++ Y RL +
Sbjct: 503 ---LEQK-----IR-HDSTAWNASGSILN--TLQQLKF--YKPYICDNDPKYERL---VN 546
Query: 166 PMQELMSRHKAYAL-SP-RDCLKTALFQKWQRMVAPPGKRESQR 207
+ + + + + + S D L+ AL + + ++ QR
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAE-DEAIFEEAHKQVQR 589
Score = 32.9 bits (74), Expect = 0.11
Identities = 32/259 (12%), Positives = 65/259 (25%), Gaps = 95/259 (36%)
Query: 4 NLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLI--PRYFRS--IFDGGITELYYN 59
L + D + + + R L+ Y + N
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL---RRLLKSKPYENCLLVLL--------N 252
Query: 60 LKHPK--ESFHNTSITLDCDQC-TMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHF 116
+++ K +F+ C ++T T + + D L + H
Sbjct: 253 VQNAKAWNAFNL--------SCKILLT-----------TRFKQV----TDFLSAATTTHI 289
Query: 117 AVRQHRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTL-------NYLRLCVILEPMQE 169
++ H + + L K + L N RL +I E +++
Sbjct: 290 SLDHHSM-------TLTPDEVKSLLLKYL---DCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 170 LMSRHKAY-----------------ALSP---RDCLKT-ALFQK------------WQRM 196
++ + L P R ++F W +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 197 VAPPGKRESQRPANKRRKR 215
+ K + NK K
Sbjct: 400 I----KSDVMVVVNKLHKY 414
>3ahq_A ERO1-like protein alpha; disulfide bond, PDI, redox, hyperactive
human ERO1, oxidored; HET: FAD; 2.35A {Homo sapiens}
PDB: 3ahr_A*
Length = 465
Score = 29.4 bits (65), Expect = 1.2
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 1/81 (1%)
Query: 46 RSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTF 105
S F G E + + + F N S +DC C GK + T +++
Sbjct: 358 NSFFAGDKKEAHKLKEDFRLHFRNISRIMDCVGCFKCRLWGKLQTQGLGTALKILFSEKL 417
Query: 106 DDLMRIKSWHFAVRQHR-ELV 125
M + R E+V
Sbjct: 418 IANMPESGPSYEFHLTRQEIV 438
>1opo_A Coat protein; plant virus, carmovirus, virus/viral protein, X-RAY
diffraction, tomato bushy stunt virus, icosahedral
virus; 3.20A {Carnation mottle virus} SCOP: b.121.4.7
Length = 348
Score = 29.1 bits (64), Expect = 1.6
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 172 SRHKAYALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGGAANSAPPAP 231
++ + A++P K + G S KRR + A + P
Sbjct: 3 NKGEKIAMNPTVQTLAQKGDKLAVKLVTRGWA-SLSTNQKRRAEMLAGYTPAILAFTPRR 61
Query: 232 SKKRSPGPNFS 242
+ +P P S
Sbjct: 62 PRMTNPPPRTS 72
>1q25_A CI, cation-independent mannose 6-phosphate receptor, MAN-6-P
receptor, CI-MPR; P-lectin, protein transport,S binding
protein; HET: MAN BMA NAG; 1.80A {Bos taurus} SCOP:
b.64.1.1 b.64.1.1 b.64.1.1 PDB: 1syo_A* 1sz0_A*
Length = 432
Score = 28.7 bits (63), Expect = 1.9
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 26 CLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHN-----TSITLDCD 77
CL G + + +GR S + + Y + F + +IT C
Sbjct: 197 CLVRGDRAFDVGRPQEGLKLVS--NDRLVLSYVKEGAGQPDFCDGHSPAVTITFVCP 251
>4esu_A Ryanodine receptor 1; phosphorylation, skeletal, metal transport;
1.59A {Oryctolagus cuniculus} PDB: 4ert_A 4ett_A 4etu_A
3rqr_A
Length = 210
Score = 27.8 bits (61), Expect = 3.0
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 164 LEPMQELMSRHKAYALSP-RDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGG 222
L P + + K P ++ LK + +W A G+ E R+ + +Q+
Sbjct: 61 LRPYKTFSEKDKEIYRWPIKESLKAMIAWEWTIEKAREGEEERTEKKKTRKISQTAQTYD 120
Query: 223 AANSAPPAP 231
P P
Sbjct: 121 PREGYNPQP 129
>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics,
PSI structure initiative; 2.10A {Chromobacterium
violaceum} SCOP: d.129.3.5
Length = 147
Score = 27.1 bits (60), Expect = 3.9
Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 6 WWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIP-RYFRSIFDGGITELYYNL 60
+ D F D T+T +I + IP G + L
Sbjct: 82 YTDRFDDAGLPGDMITTITLAPLSCGADLSIVQEGIPDAIPPENCYLGWQQSLKQL 137
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 27.1 bits (61), Expect = 6.4
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 198 APPGK----RESQRPANK----RRKRKGSQSGGAANSAPPAPSKKRSPGP 239
PPG QR N +RKR GS + A+ A ++ + P
Sbjct: 448 VPPGALAVSAGPQR--NIENWVQRKRPGSPAAQASKRASEMACQQPTQPP 495
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.417
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,760,017
Number of extensions: 211972
Number of successful extensions: 495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 19
Length of query: 247
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,160,982
Effective search space: 649113192
Effective search space used: 649113192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)