RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2753
         (247 letters)



>d1q25a3 b.64.1.1 (A:281-432) Cation-independent mannose-6-phosphate
           receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 152

 Score = 29.0 bits (64), Expect = 0.29
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 25  FCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYN-LKHPKESFHNTSITLDCDQCTMVT 83
               D  +    GR           DG +T +Y+   +        + I  +C+Q     
Sbjct: 69  VKKADSTQVKVAGRPQNLTLR--YSDGDLTLIYFGGEECSSGFQRMSVINFECNQTAGNN 126

Query: 84  HHGKPMLT 91
             G P+ T
Sbjct: 127 GRGAPVFT 134


>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 99

 Score = 27.9 bits (62), Expect = 0.42
 Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 9/73 (12%)

Query: 52  GITELYYNLK-HPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMR 110
           G+     N +  PK  F  + I         ++ + K  + K   +      F    L  
Sbjct: 26  GLNIYEQNDRLTPKIGFPWSEIR-------NISFNDKKFVIKPIDKKAPDFVFYAPRLRI 78

Query: 111 IKS-WHFAVRQHR 122
            K      +  H 
Sbjct: 79  NKRILALCMGNHE 91


>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus
           thermophilus [TaxId: 274]}
          Length = 144

 Score = 28.3 bits (62), Expect = 0.56
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 45  FRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFT 104
            R +           + +PK  +  T    +     M   +   +L  V  EGRL+   T
Sbjct: 55  LRDLIVADPRTRVAEIMNPKVVYVRTDTDQEEVARLM-ADYDFTVLPVVDEEGRLVGIVT 113

Query: 105 FDDLMRI 111
            DD++ +
Sbjct: 114 VDDVLDV 120


>d1ebfa2 d.81.1.2 (A:151-340) Homoserine dehydrogenase {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 190

 Score = 27.8 bits (61), Expect = 1.0
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 10/51 (19%)

Query: 144 NITR-QGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTALFQKW 193
            + + +GI + TL+Y     I        +    ++    D +K A    +
Sbjct: 15  EVEKIEGIFSGTLSY-----IFNEFSTSQANDVKFS----DVVKVAKKLGY 56


>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit,
           IlvH {Escherichia coli [TaxId: 562]}
          Length = 76

 Score = 24.6 bits (54), Expect = 4.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 128 TIVGMQDPSMLEQLTKNITRQ 148
           TI  + D  +LEQ+ K + + 
Sbjct: 46  TIQTVGDEKVLEQIEKQLHKL 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0424    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 927,879
Number of extensions: 41649
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 7
Length of query: 247
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,268,006
Effective search space: 207952984
Effective search space used: 207952984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)