BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2754
(367 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W676|LDB2_CHICK LIM domain-binding protein 2 OS=Gallus gallus GN=LDB2 PE=2 SV=1
Length = 371
Score = 521 bits (1341), Expect = e-147, Method: Compositional matrix adjust.
Identities = 253/357 (70%), Positives = 294/357 (82%), Gaps = 10/357 (2%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRHTPY QP+YR+YE+NKRLQ R+E+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQARSEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVC
Sbjct: 79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC 138
Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +LEQL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILPMHAQDPQVLEQLSKNITRMGLTN 198
Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP + +++P KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKR 257
Query: 255 RKRK----GSQSGGAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDERL 310
RKRK + + A N+A SKK+S N SL+SQDVMVVGEP+LMGGEFGDEDERL
Sbjct: 258 RKRKNSTSSTSNSSAGNNANSTNSKKKSAAANLSLSSQDVMVVGEPTLMGGEFGDEDERL 317
Query: 311 ITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPAVSQ 367
ITRLENTQYDA AN +D + F++SP+ G +P P N + S+ +P SQ
Sbjct: 318 ITRLENTQYDA-ANGMDDEEDFNNSPALGNNSPWNSKPPANQETK--SENPTPQASQ 371
>sp|O43679|LDB2_HUMAN LIM domain-binding protein 2 OS=Homo sapiens GN=LDB2 PE=1 SV=1
Length = 373
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 250/355 (70%), Positives = 295/355 (83%), Gaps = 14/355 (3%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRHTPY QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVC
Sbjct: 79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC 138
Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +L+QL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTN 198
Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP + +++P KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKR 257
Query: 255 RKRK----GSQSGGAANSAPPAPSKKRSPGPNFSLASQ--DVMVVGEPSLMGGEFGDEDE 308
RKRK + + A N+A SKK++ N SL+SQ DVMVVGEP+LMGGEFGDEDE
Sbjct: 258 RKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDE 317
Query: 309 RLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
RLITRLENTQYDA AN +D + F++SP+ G +P P P++Q++ ++P
Sbjct: 318 RLITRLENTQYDA-ANGMDDEEDFNNSPALGNNSPWNSKP----PATQETKSENP 367
>sp|O55203|LDB2_MOUSE LIM domain-binding protein 2 OS=Mus musculus GN=Ldb2 PE=1 SV=2
Length = 373
Score = 514 bits (1323), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/361 (69%), Positives = 296/361 (81%), Gaps = 16/361 (4%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRHTPY QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQC MVT HGKPM TKVC
Sbjct: 79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVC 138
Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +L+QL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTN 198
Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP + +++P KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKR 257
Query: 255 RKRK----GSQSGGAANSAPPAPSKKRSPGPNFSLASQ--DVMVVGEPSLMGGEFGDEDE 308
RKRK + + A N+ A SKK++P + SLA+Q DVMVVGEP+LMGGEFGDEDE
Sbjct: 258 RKRKNSTSSTSNSSAGNTTNSAGSKKKTPAASLSLATQVPDVMVVGEPTLMGGEFGDEDE 317
Query: 309 RLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQD--SDKKSPAVS 366
RLITRLENTQYDA AN +D + F++SP+ G +P P P++Q+ S+ P S
Sbjct: 318 RLITRLENTQYDA-ANGMDDEEDFNNSPALGNNSPWNSKP----PATQETKSENAPPQAS 372
Query: 367 Q 367
Q
Sbjct: 373 Q 373
>sp|Q6NVL6|LDB1_XENTR LIM domain-binding protein 1 OS=Xenopus tropicalis GN=ldb1 PE=2
SV=1
Length = 373
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/355 (70%), Positives = 288/355 (81%), Gaps = 11/355 (3%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 79
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKESFHN ++LDCDQCTMVT HGKPM T+
Sbjct: 80 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQ 139
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 140 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 199
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q P N
Sbjct: 200 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQAP-N 258
Query: 253 KRRKRK---GSQSGGAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDER 309
KRRKRK GS + + SKK+SP F+L+SQDVMVVGEP+LMGGEFGDEDER
Sbjct: 259 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQDVMVVGEPTLMGGEFGDEDER 318
Query: 310 LITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPA 364
LITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+S ++P
Sbjct: 319 LITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENPT 368
>sp|P70060|LDB1_XENLA LIM domain-binding protein 1 OS=Xenopus laevis GN=ldb1 PE=1 SV=2
Length = 375
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 250/357 (70%), Positives = 288/357 (80%), Gaps = 13/357 (3%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 79
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKESFHN ++LDCDQCTMVT HGKPM T+
Sbjct: 80 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQ 139
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 140 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 199
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q P+
Sbjct: 200 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQAPS- 258
Query: 253 KRRKRK---GSQSGGAANSAPPAPSKKRSPGPNFSLASQ--DVMVVGEPSLMGGEFGDED 307
KRRKRK GS + + SKK+SP F+L+SQ DVMVVGEP+LMGGEFGDED
Sbjct: 259 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDED 318
Query: 308 ERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPA 364
ERLITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+S ++P
Sbjct: 319 ERLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENPT 370
>sp|O42252|LDB1_CHICK LIM domain-binding protein 1 OS=Gallus gallus GN=LDB1 PE=2 SV=1
Length = 411
Score = 504 bits (1297), Expect = e-142, Method: Compositional matrix adjust.
Identities = 250/357 (70%), Positives = 289/357 (80%), Gaps = 13/357 (3%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 56 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 115
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKESFHN ++LDCDQCTMVT HGKPM T+
Sbjct: 116 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQ 175
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 176 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 235
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q+P+
Sbjct: 236 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQQPS- 294
Query: 253 KRRKRK---GSQSGGAANSAPPAPSKKRSPGPNFSLASQ--DVMVVGEPSLMGGEFGDED 307
KRRKRK GS + + SKK+SP F+L+SQ DVMVVGEP+LMGGEFGDED
Sbjct: 295 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDED 354
Query: 308 ERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPA 364
ERLITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+S ++P
Sbjct: 355 ERLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENPT 406
>sp|Q86U70|LDB1_HUMAN LIM domain-binding protein 1 OS=Homo sapiens GN=LDB1 PE=1 SV=2
Length = 411
Score = 495 bits (1274), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/357 (68%), Positives = 288/357 (80%), Gaps = 13/357 (3%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 56 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 115
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKE+FH+ ++LDCDQ +MVT HGKPM T+
Sbjct: 116 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQ 175
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 176 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 235
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q+P+
Sbjct: 236 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPS- 294
Query: 253 KRRKRK---GSQSGGAANSAPPAPSKKRSPGPNFSLASQ--DVMVVGEPSLMGGEFGDED 307
KRRKRK GS + + SKK+SP F+L+SQ DVMVVGEP+LMGGEFGDED
Sbjct: 295 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDED 354
Query: 308 ERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPA 364
ERLITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+S ++P
Sbjct: 355 ERLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENPT 406
>sp|P70662|LDB1_MOUSE LIM domain-binding protein 1 OS=Mus musculus GN=Ldb1 PE=1 SV=2
Length = 411
Score = 495 bits (1274), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/357 (68%), Positives = 288/357 (80%), Gaps = 13/357 (3%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 56 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 115
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKE+FH+ ++LDCDQ +MVT HGKPM T+
Sbjct: 116 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQ 175
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 176 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 235
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q+P+
Sbjct: 236 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQQPS- 294
Query: 253 KRRKRK---GSQSGGAANSAPPAPSKKRSPGPNFSLASQ--DVMVVGEPSLMGGEFGDED 307
KRRKRK GS + + SKK+SP F+L+SQ DVMVVGEP+LMGGEFGDED
Sbjct: 295 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDED 354
Query: 308 ERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPA 364
ERLITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+S ++P
Sbjct: 355 ERLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENPT 406
>sp|Q1EQW7|LDB2_XENLA LIM domain-binding protein 2 OS=Xenopus laevis GN=ldb2 PE=2 SV=1
Length = 398
Score = 489 bits (1259), Expect = e-137, Method: Compositional matrix adjust.
Identities = 246/381 (64%), Positives = 291/381 (76%), Gaps = 37/381 (9%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRH PY QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19 RRHAPYMVQPEYRIYEMNKRLQTRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVC
Sbjct: 79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC 138
Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
TEGRLILEFTFDDLMRIK+WHF +RQ+REL+PR+I+ M QDP +LEQL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELLPRSILAMHAQDPQVLEQLSKNITRMGLTN 198
Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP + +++ KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQTTTKR 257
Query: 255 RKRK----GSQSGGAANSAPPAPSKKRSPGPNFSLASQ---------------------- 288
RKRK + + A N+A A ++K+ P + +L++Q
Sbjct: 258 RKRKNSTNNASNSNAGNNATSAYNRKKVPAASLNLSNQVPFPTTKKCIGDKTRVRRNYRG 317
Query: 289 -----DVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAP 343
DVMVVGEP+LMGGEFGDEDERLITRLENTQYDA AN +D + F+ SP+ G +P
Sbjct: 318 IRNGLDVMVVGEPTLMGGEFGDEDERLITRLENTQYDA-ANGMDDEEDFNSSPALGNNSP 376
Query: 344 --DRGPPQGNTPSSQDSDKKS 362
+ PP T S + + S
Sbjct: 377 WNSKPPPNAETKSDNPTQQAS 397
>sp|O73715|LDB1A_DANRE LIM domain-binding protein 1-A OS=Danio rerio GN=ldb1a PE=2 SV=1
Length = 374
Score = 488 bits (1255), Expect = e-137, Method: Compositional matrix adjust.
Identities = 247/356 (69%), Positives = 285/356 (80%), Gaps = 14/356 (3%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEES-DNLWWDAFATEFFEDDATLTLTFCLEDGP 73
G+ RHTPY Q DYR++ELNKRLQ TE+ DNLWWDAF TEFFEDDA LT+TFCLEDGP
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEQDCDNLWWDAFTTEFFEDDAMLTITFCLEDGP 79
Query: 74 KRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLT 133
KRYTIGRTLIPRYFRSIF+GG TEL+Y LKHPKESFHN ++LDCDQCTMVT +GKPM T
Sbjct: 80 KRYTIGRTLIPRYFRSIFEGGATELFYVLKHPKESFHNNFVSLDCDQCTMVTQNGKPMFT 139
Query: 134 KVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQG 191
+VC EGRL LEF FDD+MRIK+WHF++RQHRE+VPR+I+ M QDP ML+QL+KNITR G
Sbjct: 140 QVCVEGRLYLEFMFDDMMRIKTWHFSIRQHREVVPRSILAMHAQDPQMLDQLSKNITRCG 199
Query: 192 ITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPA 251
++NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q P
Sbjct: 200 LSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQAP- 258
Query: 252 NKRRKRK---GSQSGGAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMGGEFGDEDE 308
NKRRKRK GS + + SKK+SP +F+L+SQDVMVVGEP+LMGGEFGDEDE
Sbjct: 259 NKRRKRKMSGGSTMSSGGGNNNNSNSKKKSPASSFALSSQDVMVVGEPTLMGGEFGDEDE 318
Query: 309 RLITRLENTQYDAGANCLDHDPHFSDSPS------WGGGAPDRGPPQGNTPSSQDS 358
RLITRLENTQ+DA AN +D + F+ SP+ W AP + + PSSQ S
Sbjct: 319 RLITRLENTQFDA-ANGIDDEDSFNSSPTMGTNSPWNSKAPSSQQGKNDNPSSQSS 373
>sp|Q8W234|SEUSS_ARATH Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU
PE=1 SV=1
Length = 877
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 34/170 (20%)
Query: 29 RVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIG--------- 79
R+ + R Q R E+++ +W F E+F +A + G R T G
Sbjct: 309 RLTQYMYRQQHRPEDNNIEFWRKFVAEYFAPNAKKRWCVSMY-GSGRQTTGVFPQDVWHC 367
Query: 80 --------------RTLIPRYFRSIFDGGITELYYNLKHPKESFHNTS-ITLDCDQCTM- 123
++PR F+ ++ G E + P+ES +++ I L+ + T
Sbjct: 368 EICNRKPGRGFEATAEVLPRLFKIKYESGTLEELLYVDMPRESQNSSGQIVLEYAKATQE 427
Query: 124 -VTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIV 172
V H +V +G+L + F+ D ++I SW F R+H EL+PR ++
Sbjct: 428 SVFEH-----LRVVRDGQLRIVFSPD--LKIFSWEFCARRHEELIPRRLL 470
>sp|O74364|ADN1_SCHPO Adhesion defective protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=adn1 PE=3 SV=1
Length = 391
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/152 (19%), Positives = 67/152 (44%), Gaps = 10/152 (6%)
Query: 29 RVYELNKRLQ---QRTEESDNLWWDAFATEFFEDDATLTLTFCLEDG----PKRYTIGRT 81
R+ + N++L + T + D +W F +F+ + T +D PK + +
Sbjct: 23 RLLQYNEQLMSGWESTMKDDIGYWRRFVHDFYTEKGTFRYNIDYKDSPNQEPKLFELSYA 82
Query: 82 LIPRYFRSIFDGGITELYYNLKHPKE-SFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGR 140
+PR+ + G + ++ + L + KE + N ++ + +++ + + +V G
Sbjct: 83 ALPRFLYLSYCGKLKKMSFLLGNTKEFAIPNNGYFVESSRASILYQYQGGV--QVIVSGH 140
Query: 141 LILEFTFDDLMRIKSWHFAVRQHRELVPRTIV 172
L F L+++ S F+ H E + R ++
Sbjct: 141 LRAHFFRAPLLKLDSLEFSAVGHSEYLLRELM 172
>sp|C3PKD9|Y2449_CORA7 UPF0371 protein cauri_2449 OS=Corynebacterium aurimucosum (strain
ATCC 700975 / DSM 44827 / CN-1) GN=cauri_2449 PE=3 SV=1
Length = 498
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 178 SMLEQLTKNITRQGITNSTLNYLRLCVILEPM------QELMSRH-KAYALSPRDCLKTT 230
S+LE+LT + Q T+ +N + C+ + + QE++ R+ K R+ L TT
Sbjct: 266 SLLERLTGTVPYQSPTDMGVNMVGFCITDDEVCREASQQEIIRRYFKTLVEEARNGLDTT 325
Query: 231 LFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGGAANS 268
++ ++A G + + RP ++K ++ G A +
Sbjct: 326 QSERAAVVMAKAGIKSTDRPVVLPARQKAEETQGPAAA 363
>sp|Q15561|TEAD4_HUMAN Transcriptional enhancer factor TEF-3 OS=Homo sapiens GN=TEAD4 PE=1
SV=3
Length = 434
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 96 TELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKS 155
+L N++ SF+ S + + ++T TKVC+ G+ ++E + R ++
Sbjct: 300 ADLNTNIEDEGSSFYGVSSQYESPENMIIT-----CSTKVCSFGKQVVEKVETEYARYEN 354
Query: 156 WHFAVRQHRELVPRTIVG-------MQDPSMLEQLTKNIT-RQGITNSTLNYLRLCV 204
H++ R HR + ++ + + M+ + +N T Q +TN LC+
Sbjct: 355 GHYSYRIHRSPLCEYMINFIHKLKHLPEKYMMNSVLENFTILQVVTNRDTQETLLCI 411
>sp|P48984|TEAD4_CHICK Transcriptional enhancer factor TEF-3 OS=Gallus gallus GN=TEAD4
PE=2 SV=1
Length = 438
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 96 TELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKS 155
+L N++ SF+ S + + ++T TKVC+ G+ ++E + ++
Sbjct: 304 ADLNTNIEDESRSFYGVSSQYESPENMVIT-----CSTKVCSFGKQVVEKVETEYAHYEN 358
Query: 156 WHFAVRQHRELVPRTIVG-------MQDPSMLEQLTKNIT-RQGITNSTLNYLRLCV 204
H+A R HR + ++ + + M+ + +N T Q +TN LC+
Sbjct: 359 GHYAYRIHRSPLCEYMINFIHKLKHLPEKYMMNSVLENFTILQVVTNRDTQETLLCI 415
>sp|P29294|MYLK_RABIT Myosin light chain kinase, smooth muscle OS=Oryctolagus cuniculus
GN=MYLK PE=1 SV=2
Length = 1147
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 223 PRDCLKTTLFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGGAANSAPPAPSKKRSPG-- 280
P + LK K P GK E ++ K ++G A N PPA SPG
Sbjct: 274 PAETLKAVANAKPAETPKPAGKEELKKEVQNDVNCKREKAGAADNEKPPA-----SPGTA 328
Query: 281 PNFSLASQDVMVV-GEPSLMGGEFGDEDERLIT 312
P F QDV V GE L+ + E IT
Sbjct: 329 PTFKEKLQDVRVAEGEKLLLQCQVSSEPPATIT 361
>sp|Q4V8I2|CNDH2_RAT Condensin-2 complex subunit H2 OS=Rattus norvegicus GN=Ncaph2 PE=2
SV=1
Length = 554
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 220 ALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKRRKRKGS 260
+L P D L + LFQK + PPG E+ ++RKRKG+
Sbjct: 258 SLDPFDSLDSKLFQKGKPYSVPPGVEEA---PGQKRKRKGA 295
>sp|P97445|CAC1A_MOUSE Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS=Mus
musculus GN=Cacna1a PE=1 SV=2
Length = 2368
Score = 31.6 bits (70), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 13/55 (23%)
Query: 314 LENTQYDAGANCLDHDPHFSDSPSW------------GGGAPDRGPPQGNTPSSQ 356
L +TQ D G + H+ +SPSW G +P+RGPP + P+SQ
Sbjct: 1958 LPSTQLDPGGGLMAHEGGMKESPSWVTQRAQEMFQKTGTWSPERGPPI-DMPNSQ 2011
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,302,319
Number of Sequences: 539616
Number of extensions: 6656051
Number of successful extensions: 19548
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 19357
Number of HSP's gapped (non-prelim): 172
length of query: 367
length of database: 191,569,459
effective HSP length: 119
effective length of query: 248
effective length of database: 127,355,155
effective search space: 31584078440
effective search space used: 31584078440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)