Query psy2754
Match_columns 367
No_of_seqs 121 out of 145
Neff 4.4
Searched_HMMs 46136
Date Sat Aug 17 00:21:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2181|consensus 100.0 7E-122 2E-126 884.4 25.6 349 13-367 37-415 (415)
2 PF01803 LIM_bind: LIM-domain 100.0 7.8E-59 1.7E-63 434.5 20.8 199 27-229 1-240 (240)
3 PF11678 DUF3274: Protein of u 51.9 40 0.00087 33.8 6.4 43 288-341 68-117 (285)
4 PF09096 Phage-tail_2: Basepla 50.7 6.6 0.00014 36.2 0.7 12 290-301 8-19 (168)
5 PF00859 CTF_NFI: CTF/NF-I fam 33.7 62 0.0013 32.6 4.5 17 220-236 183-199 (295)
6 PHA02612 27 baseplate hub subu 32.8 14 0.0003 37.8 -0.1 12 290-301 209-220 (372)
7 PF09868 DUF2095: Uncharacteri 32.6 56 0.0012 29.1 3.6 54 187-240 58-114 (128)
8 COG4003 Uncharacterized protei 27.5 1.3E+02 0.0029 25.5 4.8 55 187-241 28-85 (98)
9 PF14228 MOR2-PAG1_mid: Cell m 24.3 1.7E+02 0.0036 34.7 6.4 60 193-253 698-773 (1120)
10 PRK12442 translation initiatio 24.1 1.3E+02 0.0029 25.3 4.2 47 107-162 15-64 (87)
11 PF13474 SnoaL_3: SnoaL-like d 22.8 3.8E+02 0.0082 21.0 6.6 98 53-160 20-118 (121)
12 COG5169 HSF1 Heat shock transc 20.9 50 0.0011 33.1 1.3 46 51-96 12-66 (282)
No 1
>KOG2181|consensus
Probab=100.00 E-value=7e-122 Score=884.38 Aligned_cols=349 Identities=65% Similarity=1.059 Sum_probs=332.7
Q ss_pred CCCcccCCCCCCCCcchHHHHHHHhhcCCCCCchHHHHHHHHHhcCCCCcEEEEEecCCCCeeeeecccchhhHHHHhhc
Q psy2754 13 CVGVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFD 92 (367)
Q Consensus 13 ~~~~~~h~p~~gq~~lRL~qfnerL~~~~~~~di~yW~~FV~EFFsp~a~lR~~~~~~~g~K~FEI~~~~LPRyF~t~Fe 92 (367)
+||++||.||..+.++||+++|+||+.|.+.+|..|||+|.+|||++||+|+++||.++|+|+|.|++++|||||+++||
T Consensus 37 ~pg~~rh~~y~s~~e~Ri~emNkRLq~~se~sdN~WWDaFstEFFeDDa~Lt~~fclEdgpkRYtIgRtlIPrfFrsIfe 116 (415)
T KOG2181|consen 37 EPGFQRHGNYVSPLEFRIHEMNKRLQIFSEVSDNQWWDAFSTEFFEDDAKLTFVFCLEDGPKRYTIGRTLIPRFFRSIFE 116 (415)
T ss_pred CCcccccCCCcCcchhhHHHHHHHHHHhcccchhhhHHhhhhhhhcCCceEEEEEEecCCcceeeeccchhHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeEEeecCCCcccccCCceEEecCCcEEEEeecCCcceEEEeeeeEEEEEecCccceeeeEEEeeccceeeeccccc
Q psy2754 93 GGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIV 172 (367)
Q Consensus 93 SGV~~mqlvLd~prE~l~ng~i~le~~~a~~vt~Y~~~~~~~V~~eG~Lra~F~~d~~lKIe~weF~~~~HeEyIpR~~i 172 (367)
+||+++||+|++|+|.|+||.+.+||++|++||+|++|.+++||++|+|.++|.+||+|||++|+|++++|+|+|||++|
T Consensus 117 gG~~eLyyvLkh~ket~hn~s~~~dcdq~~~iTqhgkp~ft~VctegrL~lEF~fDd~MRIK~Wh~~ik~~rElvprsil 196 (415)
T KOG2181|consen 117 GGMRELYYVLKHPKETLHNGSQAYDCDQVLQITQHGKPSFTEVCTEGRLYLEFAFDDVMRIKAWHLEIKRSRELVPRSIL 196 (415)
T ss_pred cchhhhhhhhcCchhhhcCCceeeeccceeEEeecCCccceeeeccceEEEEeehhhhhhhhheeeeeeccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc--C-CChhhhhhccCCCCCCCChHHHHHHHHHHHhhhhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q psy2754 173 GM--Q-DPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQR 249 (367)
Q Consensus 173 ~~--Q-sP~~~kql~k~Vn~~Gvp~~vlr~LEIaEil~~MqdLmsf~k~~~LsP~eaLk~~v~qk~Q~~~~p~~~~~~~~ 249 (367)
+. + +|+++.|+.|||+++|++++|++||++|+||++||+||+.||++.|+||||||++|||||||||+||+| |+++
T Consensus 197 ~~~a~~dp~~ldq~~kNitR~G~~nsTlNylrlcvILePMQelMSrhKayalsPRdclKttLFQkwQrMvaPp~e-p~~q 275 (415)
T KOG2181|consen 197 QNTADYDPEALDQEQKNITRMGFFNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPPE-PEKQ 275 (415)
T ss_pred hccCCCChhhhChhhccccccccchhhHHHHHHHHHHhHHHHHHHhccccCCCHHHHHHHHHHHHhhhhhcCCCC-CCCC
Confidence 86 3 899999999999999999999999999999999999999999999999999999999999999999999 5555
Q ss_pred -chhhhcccCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCC--CeEEeecCcccCCCCCCccccceeecccCCCCCc
Q psy2754 250 -PANKRRKRKGSQSGG----AANSAPPAPSKKRSPGPNFSLASQ--DVMVVGEPSLMGGEFGDEDERLITRLENTQYDAG 322 (367)
Q Consensus 250 -~~~~~r~rk~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~--dvmvvgeps~mgg~~g~eder~itr~en~q~d~~ 322 (367)
+++||||||+|++++ +++|+++++.|+.+|++.++|++| ||||||||||||||||||||||||||||||||+
T Consensus 276 kp~~KRrkrk~a~~~~~~~~a~nna~~~n~k~~p~~p~~slssQ~pDVMVVGEPtlMGgEFGeeDERlItRlENtQyD~- 354 (415)
T KOG2181|consen 276 KPARKRRKRKAAAAAAAAAAAANNASPANNKQFPPNPMTSLSSQMPDVMVVGEPTLMGGEFGEEDERLITRLENTQYDP- 354 (415)
T ss_pred CCchhhhhcccccccccccccCCCCCccccccCCCCcchhhhhcCCceEEecCccccccccccchhHHHHhhhccccCc-
Confidence 899999999776553 555677788999999999999999 999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC----CCCCCCC------------CCCCCCCCCCCCCCCC--CCCCCC--CCCC
Q psy2754 323 ANCLDHDPHFSD----SPSWGGG------------APDRGPPQGNTPSSQD--SDKKSP--AVSQ 367 (367)
Q Consensus 323 ~~~~~~~~~~~~----~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~~--~~~~ 367 (367)
+||++++++|+. ||++|++ +||+++| |+.|+ ++++.| ++||
T Consensus 355 ~Ng~~~~n~~~~g~~~sP~~g~np~~~~~~~~~~~sP~n~~p----ps~q~~~~~~~~ps~~asQ 415 (415)
T KOG2181|consen 355 MNGRNMMNQHHPGMQPSPGQGHNPPHSMQMPTSMHSPMNMPP----PSMQGHGGMPPMPSTMASQ 415 (415)
T ss_pred cccccchhccCCCCCCCccccCCCcchhccccccCCCCCCCC----ccccccCCCCCCCcccccC
Confidence 899999999997 9999999 9999999 77777 666555 8887
No 2
>PF01803 LIM_bind: LIM-domain binding protein; InterPro: IPR002691 The LIM-domain binding protein, binds to the LIM domain IPR001781 from INTERPRO of LIM homeodomain proteins which are transcriptional regulators of development. Nuclear LIM interactor (NLI) / LIM domain-binding protein 1 (LDB1) P70662 from SWISSPROT is located in the nuclei of neuronal cells during development, it is co-expressed with Isl1 in early motor neuron differentiation and has a suggested role in the Isl1 dependent development of motor neurons []. It is suggested that these proteins act synergistically to enhance transcriptional efficiency by acting as co-factors for LIM homeodomain and Otx class transcription factors both of which have essential roles in development []. The Drosophila melanogaster protein Chip O18353 from SWISSPROT is required for segmentation and activity of a remote wing margin enhancer []. Chip is a ubiquitous chromosomal factor required for normal expression of diverse genes at many stages of development []. It is suggested that Chip cooperates with different LIM domain proteins and other factors to structurally support remote enhancer-promoter interactions [].; GO: 0003712 transcription cofactor activity, 0005634 nucleus
Probab=100.00 E-value=7.8e-59 Score=434.52 Aligned_cols=199 Identities=33% Similarity=0.625 Sum_probs=184.1
Q ss_pred cchHHHHHHHhhcC-CCCCchHHHHHHHHHhcCCCCcEEEEEecCCCC---eeeeecccchhhHHHHhhccCceeEEeec
Q psy2754 27 DYRVYELNKRLQQR-TEESDNLWWDAFATEFFEDDATLTLTFCLEDGP---KRYTIGRTLIPRYFRSIFDGGITELYYNL 102 (367)
Q Consensus 27 ~lRL~qfnerL~~~-~~~~di~yW~~FV~EFFsp~a~lR~~~~~~~g~---K~FEI~~~~LPRyF~t~FeSGV~~mqlvL 102 (367)
+|||++|+++|+.+ ++.+|++||++||+|||+|+|+|||+++..++. |+|||++++|||||+++|++||++|+|+|
T Consensus 1 ilRl~~~~~~l~~~~~~~~~~~yW~~fv~~fF~~~a~lr~~~~~~~~~~~~k~FEi~~~~lPR~f~~~~~sGv~~~~~~l 80 (240)
T PF01803_consen 1 ILRLLEFIERLSNFSPNLNDIEYWQKFVHEFFSPDAVLRISLWNEDGNGSPKQFEITRPLLPRYFRTLFESGVKRMQLVL 80 (240)
T ss_pred CchHHHHHHHHHhhcCCCCcHHHHHHHHHHHcCCCeeEEEEEEcCCCCCCCeeEEEchHHHHHHHHHHhcCCceEEEEEe
Confidence 58999999999999 899999999999999999999999999987776 99999999999999999999999999999
Q ss_pred CCCccc-ccCCceEEecCCcEEEEeecCCcceEEEeeeeEEEEEecCccceeeeEEEeeccceeeecccccccC------
Q psy2754 103 KHPKES-FHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQ------ 175 (367)
Q Consensus 103 d~prE~-l~ng~i~le~~~a~~vt~Y~~~~~~~V~~eG~Lra~F~~d~~lKIe~weF~~~~HeEyIpR~~i~~Q------ 175 (367)
++++|. ++||.+++||.+|+++++|.+ +++|+++|+||++|+.+ +|||+|||++++|+|||||++|..+
T Consensus 81 ~~~~e~~l~ng~i~ie~~~~~~~~~y~~--gs~v~~~G~lr~~f~~~--lKIe~~df~~~~~~e~I~r~~l~~~~~~~~~ 156 (240)
T PF01803_consen 81 DGPREQVLPNGSIFIECPRATFIYWYED--GSQVVHEGQLRAQFDPD--LKIEWWDFCTRSHEEYIPRSALEQQASNLHP 156 (240)
T ss_pred cCCceEEcCCCeEEEEECCEEEEEEECC--ceEEEEEeEEEEEECcc--ccEEEEEEEeecccccCcHHHHHHhhccchh
Confidence 999999 899999999999999999998 56999999999999988 9999999999999999999998762
Q ss_pred --------------CChhhhh--hc-------------cCCCCCCCChHHHHHHHHHHHhhhhHHHHHHhhccC-CCHHH
Q psy2754 176 --------------DPSMLEQ--LT-------------KNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA-LSPRD 225 (367)
Q Consensus 176 --------------sP~~~kq--l~-------------k~Vn~~Gvp~~vlr~LEIaEil~~MqdLmsf~k~~~-LsP~e 225 (367)
+|.+.++ .. ++||++|+|+++||||||||||++|++||.|++.++ +||+|
T Consensus 157 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~Lp~~~v~~~Gi~~~~mr~Lqi~evms~M~~Lm~fs~~~~~~sP~e 236 (240)
T PF01803_consen 157 SVQIFQKLSPDQKQSPDMSKNSKARQQKSPQLPPSLPSSNVNEFGIPERVMRCLQIAEVMSQMKDLMSFSKQNNILSPLE 236 (240)
T ss_pred hhHHhhhcccccccccchhhhhhhhhhcccccCCCcccCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 2444333 22 579999999999999999999999999999977655 99999
Q ss_pred HHHH
Q psy2754 226 CLKT 229 (367)
Q Consensus 226 aLk~ 229 (367)
||++
T Consensus 237 aL~~ 240 (240)
T PF01803_consen 237 ALEQ 240 (240)
T ss_pred HhcC
Confidence 9984
No 3
>PF11678 DUF3274: Protein of unknown function (DUF3274); InterPro: IPR021692 This bacterial family of proteins has no known function.
Probab=51.87 E-value=40 Score=33.82 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=35.7
Q ss_pred CCeEEeec-------CcccCCCCCCccccceeecccCCCCCcCCCCCCCCCCCCCCCCCCC
Q psy2754 288 QDVMVVGE-------PSLMGGEFGDEDERLITRLENTQYDAGANCLDHDPHFSDSPSWGGG 341 (367)
Q Consensus 288 ~dvmvvge-------ps~mgg~~g~eder~itr~en~q~d~~~~~~~~~~~~~~~~~~~~~ 341 (367)
+.|.|-|| |.|+|||. +|-..++..-|.|.-|+.+-+-++||.
T Consensus 68 ~~r~INgE~L~Pp~~p~m~gGe~-----------~~~~gt~~~aG~d~pDdv~~~valgn~ 117 (285)
T PF11678_consen 68 EGRLINGEALPPPFEPQMFGGEA-----------GNRPGTPTKAGKDRPDDVSANVALGNP 117 (285)
T ss_pred CeeEeccccCCCCccccccCCcc-----------cccCCCCCcccCcCCCchhhhhhccCc
Confidence 58888886 89999998 566777778889999999988888864
No 4
>PF09096 Phage-tail_2: Baseplate structural protein, domain 2; InterPro: IPR015180 This domain adopts a beta barrel structure with a Greek key topology, which is topologically similar to the FMN-binding split barrel. It is found at the C terminus of the Gp27 protein; a structural component of the viral baseplate []. ; PDB: 1WTH_D 2Z6B_D 1K28_D.
Probab=50.67 E-value=6.6 Score=36.17 Aligned_cols=12 Identities=67% Similarity=1.082 Sum_probs=4.3
Q ss_pred eEEeecCcccCC
Q psy2754 290 VMVVGEPSLMGG 301 (367)
Q Consensus 290 vmvvgeps~mgg 301 (367)
=||||||.|||-
T Consensus 8 ~~vVgeprliGq 19 (168)
T PF09096_consen 8 PMVVGEPRLIGQ 19 (168)
T ss_dssp EEEES-------
T ss_pred ceEecChHHHHH
Confidence 489999999974
No 5
>PF00859 CTF_NFI: CTF/NF-I family transcription modulation region; InterPro: IPR000647 Nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF) [, ] (also known as TGGCA-binding proteins) are a family of vertebrate nuclear proteins which recognise and bind, as dimers, the palindromic DNA sequence 5'-TGGCANNNTGCCA-3'. CTF/NF-I binding sites are present in viral and cellular promoters and in the origin of DNA replication of Human adenovirus 2 (HAdV-2). The CTF/NF-I proteins were first identified as nuclear factor I, a collection of proteins that activate the replication of several Adenovirus serotypes (together with NF-II and NF-III) []. The family of proteins was also identified as the CTF transcription factors, before the NFI and CTF families were found to be identical []. The CTF/NF-I proteins are individually capable of activating transcription and DNA replication. In a given species, there are a large number of different CTF/NF-I proteins, generated both by alternative splicing and by the occurrence of four different genes. CTF/NF-1 proteins contain 400 to 600 amino acids. The N-terminal 200 amino-acid sequence, almost perfectly conserved in all species and genes sequenced, mediates site-specific DNA recognition, protein dimerisation and Adenovirus DNA replication. The C-terminal 100 amino acids contain the transcriptional activation domain. This activation domain is the target of gene expression regulatory pathways elicited by growth factors and it interacts with basal transcription factors and with histone H3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006260 DNA replication, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.66 E-value=62 Score=32.63 Aligned_cols=17 Identities=24% Similarity=0.151 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy2754 220 ALSPRDCLKTTLFQKWQ 236 (367)
Q Consensus 220 ~LsP~eaLk~~v~qk~Q 236 (367)
++.|.|.||.||.-.++
T Consensus 183 H~~pqD~LKdfVqfvC~ 199 (295)
T PF00859_consen 183 HHHPQDPLKDFVQFVCD 199 (295)
T ss_pred ccCcchhHHhhhhhhcc
Confidence 77889999999985543
No 6
>PHA02612 27 baseplate hub subunit; Provisional
Probab=32.78 E-value=14 Score=37.83 Aligned_cols=12 Identities=58% Similarity=1.074 Sum_probs=10.4
Q ss_pred eEEeecCcccCC
Q psy2754 290 VMVVGEPSLMGG 301 (367)
Q Consensus 290 vmvvgeps~mgg 301 (367)
=||||||.|||-
T Consensus 209 ~~iv~eprl~gq 220 (372)
T PHA02612 209 PMIVGEPRLIGQ 220 (372)
T ss_pred cccccCchhhHH
Confidence 389999999984
No 7
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.62 E-value=56 Score=29.08 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=43.4
Q ss_pred CCCCCCChHHHHHHHHHHHhhhhHHHHHH-hhccCCCHHHH--HHHHHHHHHHHHhc
Q psy2754 187 ITRQGITNSTLNYLRLCVILEPMQELMSR-HKAYALSPRDC--LKTTLFQKWQRMVA 240 (367)
Q Consensus 187 Vn~~Gvp~~vlr~LEIaEil~~MqdLmsf-~k~~~LsP~ea--Lk~~v~qk~Q~~~~ 240 (367)
..--|..+.|+-||+.|++.+.--++++| -++--|++..| |+..|-.+=-|..-
T Consensus 58 ~~~sGy~PtViD~lrRC~T~EEALEVInylek~GEIt~e~A~eLr~~L~~kGvr~fG 114 (128)
T PF09868_consen 58 DDFSGYNPTVIDYLRRCKTDEEALEVINYLEKRGEITPEEAKELRSILVKKGVRSFG 114 (128)
T ss_pred CCccCCCChHHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhHHHhC
Confidence 33359999999999999999999999999 78888999877 66666665444443
No 8
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.49 E-value=1.3e+02 Score=25.46 Aligned_cols=55 Identities=27% Similarity=0.453 Sum_probs=44.3
Q ss_pred CCCCCCChHHHHHHHHHHHhhhhHHHHHH-hhccCCCHH--HHHHHHHHHHHHHHhcC
Q psy2754 187 ITRQGITNSTLNYLRLCVILEPMQELMSR-HKAYALSPR--DCLKTTLFQKWQRMVAP 241 (367)
Q Consensus 187 Vn~~Gvp~~vlr~LEIaEil~~MqdLmsf-~k~~~LsP~--eaLk~~v~qk~Q~~~~p 241 (367)
+.--|.-+.|..||+.|++.+---++++| .|.-.|+|- -+|+..+.+|--|-..|
T Consensus 28 ~~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrGEi~~E~A~~L~~~~~~kgvrs~~~ 85 (98)
T COG4003 28 IDFSGYNPTVIDFLRRCDTEEEALEIINYLEKRGEITPEMAKALRVTLVHKGVRSFGP 85 (98)
T ss_pred CCcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHhhHHHHHHHHhcc
Confidence 44559999999999999999999999999 888888885 45777777775555444
No 9
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=24.31 E-value=1.7e+02 Score=34.74 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=44.2
Q ss_pred ChHHHHHHHH-----------HHHhhhhHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHhcCCCCCCCCcchhh
Q psy2754 193 TNSTLNYLRL-----------CVILEPMQELMSRHKA-----YALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANK 253 (367)
Q Consensus 193 p~~vlr~LEI-----------aEil~~MqdLmsf~k~-----~~LsP~eaLk~~v~qk~Q~~~~p~~~~~~~~~~~~ 253 (367)
-..+++||-. +|+...|.+++.+.|. -..+|...+..+|.+-.++++..+.+ +.+++|..
T Consensus 698 ~~~il~FLi~~~le~~~~~~~~~~~~~~~~~~~~~K~v~~yL~r~~p~~~id~Lv~el~~~~~~~~~~-~~~~~~~~ 773 (1120)
T PF14228_consen 698 IRVILDFLIELGLERCDQNASKEISVAFATLLPYAKRVVLYLARVSPQQMIDELVYELQQRDLENPVE-PTKPPPFY 773 (1120)
T ss_pred HHHHHHHHHHHhhhhccccchhhhhhhhhhhccccceeeEeeecCCHHHHHHHHHHHHHHhhccCccc-cccCCCcc
Confidence 4456777741 3566678899999775 56799999999999999997765555 56666654
No 10
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=24.14 E-value=1.3e+02 Score=25.25 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=35.4
Q ss_pred ccccCCceEEecCCcEEEEeecCCcceEEEeeeeEEEEEe---cCccceeeeEEEeecc
Q psy2754 107 ESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFT---FDDLMRIKSWHFAVRQ 162 (367)
Q Consensus 107 E~l~ng~i~le~~~a~~vt~Y~~~~~~~V~~eG~Lra~F~---~d~~lKIe~weF~~~~ 162 (367)
|.|+|+..-+.|++-+.+.-| ..|++|.++. ..|..++|.|.|+.+.
T Consensus 15 e~Lp~~~frV~LenG~~vla~---------isGKmR~~rIrIl~GD~V~VE~spYDltk 64 (87)
T PRK12442 15 EVLPDSRFRVTLENGVEVGAY---------ASGRMRKHRIRILAGDRVTLELSPYDLTK 64 (87)
T ss_pred EECCCCEEEEEeCCCCEEEEE---------eccceeeeeEEecCCCEEEEEECcccCCc
Confidence 447888888888877777556 6899988665 5667899999888653
No 11
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=22.81 E-value=3.8e+02 Score=21.00 Aligned_cols=98 Identities=18% Similarity=0.256 Sum_probs=52.5
Q ss_pred HHHhcCCCCcEEEEEecCCCCeeeeecccchhhHHHHhhccCceeEEeecCCCcccccCCceEEecCCcEEEEeecCCcc
Q psy2754 53 ATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPML 132 (367)
Q Consensus 53 V~EFFsp~a~lR~~~~~~~g~K~FEI~~~~LPRyF~t~FeSGV~~mqlvLd~prE~l~ng~i~le~~~a~~vt~Y~~~~~ 132 (367)
+..+|++++++- ..++-..-.++..+-.||...|+.+ ..+.+.+...+-....+.+++.+ ...+.+... .
T Consensus 20 ~~~~~~~d~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~a~~~~-~~~~~~~~~---~ 89 (121)
T PF13474_consen 20 LLSLFSDDFVFF-----GTGPGEIWRGREAIRAYFERDFESF-RPISIEFEDVQVSVSGDVAVVTG-EFRLRFRND---G 89 (121)
T ss_dssp HHHHEEEEEEEE-----ETTSSSEEESHHHHHHHHHHHHHTH-SEEEEEEEEEEEEEETTEEEEEE-EEEEEEECT---T
T ss_pred HHHhhCCCEEEE-----cCCCCceECCHHHHHHHHHHHhhhC-ceEEEEEEEEEEEECCCEEEEEE-EEEEEEecC---C
Confidence 455666665541 1222222338888999999999865 78888777655544333333333 222222211 1
Q ss_pred eEEEeeeeEEEEEec-CccceeeeEEEee
Q psy2754 133 TKVCTEGRLILEFTF-DDLMRIKSWHFAV 160 (367)
Q Consensus 133 ~~V~~eG~Lra~F~~-d~~lKIe~weF~~ 160 (367)
......|+.+..|-- ++-+||...|...
T Consensus 90 ~~~~~~~r~t~v~~k~~~~Wki~h~H~S~ 118 (121)
T PF13474_consen 90 EEIEMRGRATFVFRKEDGGWKIVHIHWSA 118 (121)
T ss_dssp CEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccceeeEEEEEEEEEECCEEEEEEEEecC
Confidence 223444444444442 3447888877653
No 12
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=20.90 E-value=50 Score=33.05 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=29.5
Q ss_pred HHHHHhcC---CCCcEEEEEecCCCCe-----eeeecccchhhHHHH-hhccCce
Q psy2754 51 AFATEFFE---DDATLTLTFCLEDGPK-----RYTIGRTLIPRYFRS-IFDGGIT 96 (367)
Q Consensus 51 ~FV~EFFs---p~a~lR~~~~~~~g~K-----~FEI~~~~LPRyF~t-~FeSGV~ 96 (367)
.||+..|. +...-.+..|..+|.+ +=+.+..+|||||+. .|.|=|+
T Consensus 12 ~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVR 66 (282)
T COG5169 12 EFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVR 66 (282)
T ss_pred HHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHH
Confidence 46666664 4456666667777653 345668899999964 4555444
Done!