Query psy2754
Match_columns 367
No_of_seqs 121 out of 145
Neff 4.4
Searched_HMMs 29240
Date Sat Aug 17 00:21:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rut_X Flinc4, fusion protein 99.3 5.8E-13 2E-17 119.0 2.1 43 286-329 146-188 (188)
2 2jtn_A LIM domain-binding prot 99.2 9.2E-12 3.1E-16 110.5 6.0 43 287-330 4-46 (182)
3 2l3k_A Rhombotin-2, linker, LI 98.9 6E-10 2.1E-14 93.3 4.4 42 287-329 82-123 (123)
4 1m3v_A FLIN4, fusion of the LI 96.0 0.0031 1.1E-07 52.2 2.7 45 284-329 78-122 (122)
5 1j2o_A FLIN2, fusion of rhombo 93.7 0.034 1.2E-06 45.3 2.8 41 288-329 74-114 (114)
6 3k4g_A DNA-directed RNA polyme 18.6 55 0.0019 26.1 2.0 46 178-224 5-55 (86)
7 1z3e_B DNA-directed RNA polyme 17.6 59 0.002 24.9 2.0 41 183-224 7-52 (73)
8 2a15_A Hypothetical protein RV 17.6 3.1E+02 0.011 21.1 6.4 43 53-101 28-76 (139)
9 3hx8_A MLR2180 protein, putati 13.2 4.2E+02 0.014 19.6 7.8 92 53-159 27-124 (129)
10 2v33_A E1 envelope glycoprotei 12.8 1.4E+02 0.0049 24.1 3.1 42 93-146 22-66 (91)
No 1
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.29 E-value=5.8e-13 Score=118.95 Aligned_cols=43 Identities=79% Similarity=1.222 Sum_probs=28.8
Q ss_pred CCCCeEEeecCcccCCCCCCccccceeecccCCCCCcCCCCCCC
Q psy2754 286 ASQDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHD 329 (367)
Q Consensus 286 ~~~dvmvvgeps~mgg~~g~eder~itr~en~q~d~~~~~~~~~ 329 (367)
+++||||||||+||||.||++|||+||+|||+|||+ +|+++|+
T Consensus 146 ~~~~v~vvgep~l~g~~~~~~~~r~~~~~~~~q~~~-~~~~~~~ 188 (188)
T 1rut_X 146 SGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDA-ANGIDDE 188 (188)
T ss_dssp --CCCEECCCCEETTCCCCCTTEEECEEEEC-------------
T ss_pred cCCcccccCCCcccCCCCCCCCCceeeehhhcccCC-ccCCCCC
Confidence 368999999999999999999999999999999999 7998875
No 2
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.22 E-value=9.2e-12 Score=110.50 Aligned_cols=43 Identities=79% Similarity=1.196 Sum_probs=40.0
Q ss_pred CCCeEEeecCcccCCCCCCccccceeecccCCCCCcCCCCCCCC
Q psy2754 287 SQDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHDP 330 (367)
Q Consensus 287 ~~dvmvvgeps~mgg~~g~eder~itr~en~q~d~~~~~~~~~~ 330 (367)
.||||+||||+||||+||++||+||+||||.|||. +|+++++.
T Consensus 4 ~~~~~~~ge~~~~~~~~g~~~~~l~~~l~~~~~~~-~ng~~~~~ 46 (182)
T 2jtn_A 4 VPDVMVVGEPTLMGGEFGDEDERLITRLENTQFDA-ANGIDDEG 46 (182)
T ss_dssp CCSCEECCCCCCCCCCCCTTTSCCCEEEECSCTTS-SSCSSSSC
T ss_pred ccccccCCCcccccccccchhHHHHHhhhcccccc-ccCccccc
Confidence 46999999999999999999999999999999999 79997654
No 3
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=98.92 E-value=6e-10 Score=93.27 Aligned_cols=42 Identities=81% Similarity=1.242 Sum_probs=39.7
Q ss_pred CCCeEEeecCcccCCCCCCccccceeecccCCCCCcCCCCCCC
Q psy2754 287 SQDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHD 329 (367)
Q Consensus 287 ~~dvmvvgeps~mgg~~g~eder~itr~en~q~d~~~~~~~~~ 329 (367)
.+|+|+||||++|||.+|++++|+||+||++||++ .|+++|+
T Consensus 82 ~~~~~~~~~~~~~~g~~~~~~~R~~t~~~~~q~~~-~~~~~~~ 123 (123)
T 2l3k_A 82 GGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDA-ANGIDDE 123 (123)
T ss_dssp CSCCEECCCCCCSSCCCCCSGGGTCSCCCCCCCCC-CCCCCCC
T ss_pred cCCCcccCCCcCCCCCCCCccccceehhhhhccCc-CCCCCCC
Confidence 47999999999999999999999999999999999 7988875
No 4
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=95.99 E-value=0.0031 Score=52.19 Aligned_cols=45 Identities=76% Similarity=1.125 Sum_probs=40.9
Q ss_pred CCCCCCeEEeecCcccCCCCCCccccceeecccCCCCCcCCCCCCC
Q psy2754 284 SLASQDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHD 329 (367)
Q Consensus 284 ~~~~~dvmvvgeps~mgg~~g~eder~itr~en~q~d~~~~~~~~~ 329 (367)
++...+||+.|+|.|.|..|...|+++.=+..|.|+++ .||+|+|
T Consensus 78 ~I~~~~~~~~g~~~l~g~~f~~~~~~~yC~~~~~~~~~-~~g~~~~ 122 (122)
T 1m3v_A 78 MGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDA-ANGIDDE 122 (122)
T ss_dssp CSCCEESSSSSSSSCCSCTTCCTTCCCCEECTTTTTTC-CSCCCCC
T ss_pred CcCchheEEcCCcCCCCCccEecCCEeEccCcchhchh-hcCCCCC
Confidence 34456899999999999999999999999999999999 8999875
No 5
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=93.71 E-value=0.034 Score=45.32 Aligned_cols=41 Identities=83% Similarity=1.269 Sum_probs=38.8
Q ss_pred CCeEEeecCcccCCCCCCccccceeecccCCCCCcCCCCCCC
Q psy2754 288 QDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHD 329 (367)
Q Consensus 288 ~dvmvvgeps~mgg~~g~eder~itr~en~q~d~~~~~~~~~ 329 (367)
.+||+++++.+.|.+|...|++++=+..|.|+.+ .||+|++
T Consensus 74 ~~~~~~~~~~~~g~~f~~~~~~~~C~~~~~~~~~-~~g~~~~ 114 (114)
T 1j2o_A 74 GDVMVVGEPTLMGGEFGDEDERLITRLENTQFDA-ANGIDDE 114 (114)
T ss_dssp CSCCCSSCSSTTSSBCCCSSSCCCEEEECTTCCC-TTSSCCC
T ss_pred CceeEcCCccCCCCeeEEcCCEeecchhhhcccc-ccCCCCC
Confidence 4899999999999999999999999999999999 8999985
No 6
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=18.58 E-value=55 Score=26.06 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=36.2
Q ss_pred hhhhhhccCCCCCCCChHHHHHHHHHHHhhhhHHHHHHhhc-----cCCCHH
Q psy2754 178 SMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKA-----YALSPR 224 (367)
Q Consensus 178 ~~~kql~k~Vn~~Gvp~~vlr~LEIaEil~~MqdLmsf~k~-----~~LsP~ 224 (367)
.+.+.|..+|.+.+++.+..|||+=+. |.-..||..++.. .++|+.
T Consensus 5 ~~~~~l~~~I~~L~LSvRa~NcLkrag-I~Tv~dL~~~se~dLlki~n~G~K 55 (86)
T 3k4g_A 5 EFDPILLRPVDDLELTVRSANCLXAEA-IHYIGDLVQRTEVELLXTPNLGXX 55 (86)
T ss_dssp CCCGGGGSBGGGGCCCHHHHHHHHHTT-CCBHHHHHHSCHHHHHTSTTCCHH
T ss_pred chhHHHhCcHHHhCCCHHHHHHHHHcC-CCcHHHHHhCCHHHHhhccccCcc
Confidence 345567788999999999999999877 5677888888443 778853
No 7
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=17.60 E-value=59 Score=24.91 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=32.9
Q ss_pred hccCCCCCCCChHHHHHHHHHHHhhhhHHHHHHhhc-----cCCCHH
Q psy2754 183 LTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKA-----YALSPR 224 (367)
Q Consensus 183 l~k~Vn~~Gvp~~vlr~LEIaEil~~MqdLmsf~k~-----~~LsP~ 224 (367)
+...|.+.+++.+.+|||+=+ -+.-..||..++.. .++|+.
T Consensus 7 l~~~Ie~L~LS~Ra~NcLkra-gI~Tv~dL~~~s~~dLlki~n~G~k 52 (73)
T 1z3e_B 7 LEMTIEELDLSVRSYNCLKRA-GINTVQELANKTEEDMMKVRNLGRK 52 (73)
T ss_dssp HTCBGGGSCCBHHHHHHHHHT-TCCBHHHHHTSCHHHHHTSTTCCHH
T ss_pred hcCcHHHhCCCHHHHHHHHHc-CCCcHHHHHcCCHHHHHHcCCCCHH
Confidence 446789999999999999965 47788999998443 788863
No 8
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=17.57 E-value=3.1e+02 Score=21.07 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=28.1
Q ss_pred HHHhcCCCCcEEEEEecCCCCeee------eecccchhhHHHHhhccCceeEEee
Q psy2754 53 ATEFFEDDATLTLTFCLEDGPKRY------TIGRTLIPRYFRSIFDGGITELYYN 101 (367)
Q Consensus 53 V~EFFsp~a~lR~~~~~~~g~K~F------EI~~~~LPRyF~t~FeSGV~~mqlv 101 (367)
+.++|++++++.-- -++..+ -.++..|-.||...++.. ++.+.
T Consensus 28 ~~~l~a~D~v~~~p----~~~~~~~~~g~~~~G~~ai~~~~~~~~~~~--~~~~~ 76 (139)
T 2a15_A 28 WLALMADDVVIEDP----IGKSVTNPDGSGIKGKEAVGAFFDTHIAAN--RLTVT 76 (139)
T ss_dssp HHHTEEEEEEEESS----SSSBTTBTTSSCEESHHHHHHHHHHHTTTT--TCEEE
T ss_pred HHHhcCCCEEEECC----CCCCccCCCCceeecHHHHHHHHHHhcccc--eeEEe
Confidence 45799999977421 122221 368899999999988765 45443
No 9
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=13.20 E-value=4.2e+02 Score=19.61 Aligned_cols=92 Identities=18% Similarity=0.170 Sum_probs=50.5
Q ss_pred HHHhcCCCCcEEEEEecCCCCeeeeecccchhhHHHHhhccCceeEEeecCCCcccccCCceEEecCCcEEEEe----ec
Q psy2754 53 ATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTH----HG 128 (367)
Q Consensus 53 V~EFFsp~a~lR~~~~~~~g~K~FEI~~~~LPRyF~t~FeSGV~~mqlvLd~prE~l~ng~i~le~~~a~~vt~----Y~ 128 (367)
+.++|++++++ +. . +... -.++..|-.||...+..|...+.+... .+.+..+.+..+.. ..
T Consensus 27 ~~~l~a~Da~~---~~-~-~~~~-~~G~~~i~~~~~~~~~~~~~~~~~~~~---------~v~~~gd~A~~~~~~~~~~~ 91 (129)
T 3hx8_A 27 VASKYMDDAAA---FP-P-DMAR-VDGRQNIQKLWQGAMDMGISELKLTTL---------DVQESGDFAFESGSFSLKAP 91 (129)
T ss_dssp HHTTEEEEEEE---EC-T-TSCC-EESHHHHHHHHHHHHHTTCEEEEEEEE---------EEEEETTEEEEEEEEEEEEE
T ss_pred HHHhhCCCeEE---eC-C-CCCc-ccCHHHHHHHHHHHHhCCCceEEEEEE---------EEEcCCCEEEEEEEEEEEee
Confidence 35789999988 22 1 2222 348899999999999887655554321 12233333332221 11
Q ss_pred CCcceEEEeeeeEEEEEec--CccceeeeEEEe
Q psy2754 129 KPMLTKVCTEGRLILEFTF--DDLMRIKSWHFA 159 (367)
Q Consensus 129 ~~~~~~V~~eG~Lra~F~~--d~~lKIe~weF~ 159 (367)
.+.+..+...|+....|.. |.-.||-.=+|.
T Consensus 92 ~~~G~~~~~~g~~~~v~~r~~dG~W~i~~~~~~ 124 (129)
T 3hx8_A 92 GKDSKLVDAAGKYVVVWRKGQDGGWKLYRDIWN 124 (129)
T ss_dssp CTTSCEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCCCeeeeeEEEEEEEEECCCCcEEEEEeecc
Confidence 1234455556776666663 434555554443
No 10
>2v33_A E1 envelope glycoprotein; transmembrane, viral protein; 1.55A {Semliki forest virus} SCOP: b.1.18.4
Probab=12.82 E-value=1.4e+02 Score=24.12 Aligned_cols=42 Identities=31% Similarity=0.529 Sum_probs=28.6
Q ss_pred cCceeEEeecCCCccc-c--cCCceEEecCCcEEEEeecCCcceEEEeeeeEEEEEe
Q psy2754 93 GGITELYYNLKHPKES-F--HNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFT 146 (367)
Q Consensus 93 SGV~~mqlvLd~prE~-l--~ng~i~le~~~a~~vt~Y~~~~~~~V~~eG~Lra~F~ 146 (367)
+||-.|+|.-+++-.. . +++...+....+ .|..+|+|.+||+
T Consensus 22 GGvatl~Y~a~k~GkCaVHs~S~~atl~Es~v------------~v~~~g~~t~hFS 66 (91)
T 2v33_A 22 GGVLTLTYKTNKNGDCSVHSHSNVATLQEATA------------KVKTAGKVTLHFS 66 (91)
T ss_dssp EEEEEEEEEESSCEEEEEECCCSSEEESBSEE------------EECTTCEEEEEEE
T ss_pred CCeEEEEEecCCCccceeeccCceeEEEeeeE------------EEeccceEEEEEe
Confidence 5777888877776655 2 345555544443 4558999999998
Done!