Query psy2754
Match_columns 367
No_of_seqs 121 out of 145
Neff 4.4
Searched_HMMs 13730
Date Sat Aug 17 00:21:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2754.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2754hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k28d2 b.106.1.1 (D:201-376) 62.4 0.94 6.8E-05 38.2 0.6 12 290-301 10-21 (176)
2 d1acfa_ d.110.1.1 (A:) Profili 21.8 49 0.0035 25.3 4.5 83 49-131 2-104 (125)
3 d1doqa_ a.60.3.1 (A:) C-termin 18.5 13 0.00092 26.6 0.2 43 181-224 4-51 (69)
4 d1lb2b_ a.60.3.1 (B:) C-termin 12.7 31 0.0022 24.7 1.0 40 183-223 4-48 (72)
5 d1ohpa1 d.17.4.3 (A:1-125) Del 12.4 2.1E+02 0.015 19.5 6.6 87 53-157 26-113 (125)
6 d1s5aa_ d.17.4.10 (A:) Hypothe 11.8 87 0.0064 22.5 3.5 39 53-92 26-64 (139)
7 d1t01a2 a.24.9.1 (A:126-252) V 11.7 33 0.0024 27.0 1.0 44 194-238 14-57 (127)
8 d1m98a2 d.17.4.6 (A:176-317) O 11.0 1.4E+02 0.01 23.4 4.7 39 53-98 40-78 (142)
9 d3er7a1 d.17.4.24 (A:5-122) Un 11.0 25 0.0018 27.7 0.0 28 41-68 38-65 (118)
10 d3d9ra1 d.17.4.27 (A:3-134) Un 11.0 2.5E+02 0.018 19.5 6.3 94 53-160 29-129 (132)
No 1
>d1k28d2 b.106.1.1 (D:201-376) Baseplate structural protein gp27 {Bacteriophage T4 [TaxId: 10665]}
Probab=62.39 E-value=0.94 Score=38.25 Aligned_cols=12 Identities=67% Similarity=1.140 Sum_probs=7.2
Q ss_pred eEEeecCcccCC
Q psy2754 290 VMVVGEPSLMGG 301 (367)
Q Consensus 290 vmvvgeps~mgg 301 (367)
-||||||.|||-
T Consensus 10 ~~iV~EPrl~Gq 21 (176)
T d1k28d2 10 PMIVGEPSLIGQ 21 (176)
T ss_dssp CEECSCCC----
T ss_pred ceEeeCchHHhH
Confidence 389999999984
No 2
>d1acfa_ d.110.1.1 (A:) Profilin (actin-binding protein) {Acanthamoeba castellanii [TaxId: 5755]}
Probab=21.77 E-value=49 Score=25.27 Aligned_cols=83 Identities=17% Similarity=0.315 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCCcEEE-EEecCCCC-----eeeeeccc---chhhHH---HHhhccCce---eEEeecCCCcccc----
Q psy2754 49 WDAFATEFFEDDATLTL-TFCLEDGP-----KRYTIGRT---LIPRYF---RSIFDGGIT---ELYYNLKHPKESF---- 109 (367)
Q Consensus 49 W~~FV~EFFsp~a~lR~-~~~~~~g~-----K~FEI~~~---~LPRyF---~t~FeSGV~---~mqlvLd~prE~l---- 109 (367)
||.+|++....++.+.. .++..||. ..|.++.. .|-..| ...+.+|+. .=+++++.-.+.+
T Consensus 2 Wq~yvd~~L~~tg~v~~aaI~g~DG~vwA~S~gf~~~~~E~~~i~~~f~d~~~~~~~Gi~i~G~KY~~~~~d~~~i~~kk 81 (125)
T d1acfa_ 2 WQTYVDTNLVGTGAVTQAAILGLDGNTWATSAGFAVTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRADDRSIYGKK 81 (125)
T ss_dssp HHHHHHTTTGGGTSCSEEEEEETTSCEEEECTTCCCCHHHHHHHHHHHHCCHHHHHHCEEETTEEEEEEEESSSEEEEEE
T ss_pred hHHHHHHHhccccCcceeEEEcCCCCEEEECCCCCCCHHHHHHHHHhccChhhhhhCCEEECCeEEEEEecCCCEEEEEc
Confidence 99999998888776633 56666663 45666543 333344 222233322 2233333222221
Q ss_pred -cCCceEEecCCcEEEEeecCCc
Q psy2754 110 -HNTSITLDCDQCTMVTHHGKPM 131 (367)
Q Consensus 110 -~ng~i~le~~~a~~vt~Y~~~~ 131 (367)
.+|.+.+-+++|.++.+|+.++
T Consensus 82 ~~~Gi~i~kT~~~iiig~y~e~~ 104 (125)
T d1acfa_ 82 GSSGVITVKTSKAILVGVYNEKI 104 (125)
T ss_dssp TTEEEEEEECSSEEEEEEECTTS
T ss_pred CCCCEEEEEcCCEEEEEECCCCC
Confidence 2467777777888877777654
No 3
>d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}
Probab=18.51 E-value=13 Score=26.59 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=32.9
Q ss_pred hhhccCCCCCCCChHHHHHHHHHHHhhhhHHHHHHhhc-----cCCCHH
Q psy2754 181 EQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKA-----YALSPR 224 (367)
Q Consensus 181 kql~k~Vn~~Gvp~~vlr~LEIaEil~~MqdLmsf~k~-----~~LsP~ 224 (367)
+.|..+|.+.|++.+++|||+=+.| .-..||..+... +++|+.
T Consensus 4 ~~L~~~I~~L~LS~R~~N~L~~~gI-~tv~dL~~~s~~dLl~i~n~G~k 51 (69)
T d1doqa_ 4 EELDLPLEELGLSTRVLHSLKEEGI-ESVRALLALNLKDLKNIPGIGER 51 (69)
T ss_dssp SSCCCCHHHHTCCHHHHHHHHHTTC-CSHHHHHHSCHHHHTTSTTCCHH
T ss_pred hHhCCcHHHcCCCHHHHHHHHHcCC-ccHHHHHHCCHHHHHhCCCCCHH
Confidence 3456778899999999999996654 467888888433 788864
No 4
>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=12.74 E-value=31 Score=24.69 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=31.3
Q ss_pred hccCCCCCCCChHHHHHHHHHHHhhhhHHHHHHhhc-----cCCCH
Q psy2754 183 LTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKA-----YALSP 223 (367)
Q Consensus 183 l~k~Vn~~Gvp~~vlr~LEIaEil~~MqdLmsf~k~-----~~LsP 223 (367)
|.+.|.+.+++.++++||+=+.| .-..||+.++.. +++|.
T Consensus 4 L~k~I~~L~lS~R~~N~L~~~gI-~tvgdL~~~s~~dLl~~~n~G~ 48 (72)
T d1lb2b_ 4 LLRPVDDLELTVRSANCLKAEAI-HYIGDLVQRTEVELLKTPNLGK 48 (72)
T ss_dssp TTSBGGGGCCCHHHHHHHHHTTC-CBHHHHHTCCHHHHHHSTTCCH
T ss_pred hcCcHHHhCCCHHHHHHHhHcCC-cCHHHHHhCCHHHHHhCCCCcH
Confidence 56789999999999999997655 467888877433 77775
No 5
>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]}
Probab=12.41 E-value=2.1e+02 Score=19.52 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=47.0
Q ss_pred HHHhcCCCCcEEEEEecCCCCeeeeecccchhhHHHHhhccCceeEEeecCCCcccccCCceEEecCCcEEEEeec-CCc
Q psy2754 53 ATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHG-KPM 131 (367)
Q Consensus 53 V~EFFsp~a~lR~~~~~~~g~K~FEI~~~~LPRyF~t~FeSGV~~mqlvLd~prE~l~ng~i~le~~~a~~vt~Y~-~~~ 131 (367)
+.++|++++++. ..-+.+ --.+...|-.||...+.. ..++.+... +...++.+.+...+. ...
T Consensus 26 ~~~l~a~D~~~~----~p~~~~-~~~G~~~i~~~~~~~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 89 (125)
T d1ohpa1 26 IVALFADDATVE----NPVGSE-PRSGTAAIREFYANSLKL-PLAVELTQE----------VRAVANEAAFAFIVSFEYQ 89 (125)
T ss_dssp HHTTEEEEEEEE----SSTTSC-CEESHHHHHHHHHHHTSS-CCEEEECSC----------CEEETTEEEEEEEEEEEET
T ss_pred HHHHhCCceEEe----cCccCc-ccccHHHHHHHHHHHhhc-CCceEEEEE----------EEEecceEEEEEEEEEecC
Confidence 457888888763 212222 236778888899888764 444444221 122222222221111 122
Q ss_pred ceEEEeeeeEEEEEecCccceeeeEE
Q psy2754 132 LTKVCTEGRLILEFTFDDLMRIKSWH 157 (367)
Q Consensus 132 ~~~V~~eG~Lra~F~~d~~lKIe~we 157 (367)
+..+..+|.-...|+.| .||..+.
T Consensus 90 g~~~~~~~~~~~~~d~d--GkI~~~~ 113 (125)
T d1ohpa1 90 GRKTVVAPIDHFRFNGA--GKVVSMR 113 (125)
T ss_dssp TEEEEECCEEEEEECTT--SCEEEEE
T ss_pred CceEEEEEEEEEEECCC--CeEEEEE
Confidence 45666777777777766 7887654
No 6
>d1s5aa_ d.17.4.10 (A:) Hypothetical protein YesE {Bacillus subtilis [TaxId: 1423]}
Probab=11.82 E-value=87 Score=22.51 Aligned_cols=39 Identities=26% Similarity=0.526 Sum_probs=22.9
Q ss_pred HHHhcCCCCcEEEEEecCCCCeeeeecccchhhHHHHhhc
Q psy2754 53 ATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFD 92 (367)
Q Consensus 53 V~EFFsp~a~lR~~~~~~~g~K~FEI~~~~LPRyF~t~Fe 92 (367)
+.++|+|+++++........+++++ +...|-+||...++
T Consensus 26 ~~~l~~eD~v~~~p~~~~~~~~~~~-G~~~i~~~~~~~~~ 64 (139)
T d1s5aa_ 26 WTELWDENAVFEFPYAPEGSPKRIE-GKAAIYDYIKDYPK 64 (139)
T ss_dssp HHTTEEEEEEEECTTCCTTSCSEEE-SHHHHHHHHTTHHH
T ss_pred HHHHhCCceEEEEccCCccccceec-chHHHHHhhhhchh
Confidence 4599999999865332222233332 45666677666554
No 7
>d1t01a2 a.24.9.1 (A:126-252) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=11.66 E-value=33 Score=27.01 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q psy2754 194 NSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRM 238 (367)
Q Consensus 194 ~~vlr~LEIaEil~~MqdLmsf~k~~~LsP~eaLk~~v~qk~Q~~ 238 (367)
+.++.+|..+|+++.|+||..|-++-+ .=..-|...+...++.+
T Consensus 14 ~~V~~~L~~~e~v~s~~dLv~~~k~f~-~~m~~L~~~~~~Rq~dL 57 (127)
T d1t01a2 14 KGILEYLTVAEVVETMEDLVTYTKNLG-PGMTKMAKMIDERQQEL 57 (127)
T ss_dssp HHHHHHHTTTTTCCSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 468899999999999999999966522 11344556666665544
No 8
>d1m98a2 d.17.4.6 (A:176-317) Orange carotenoid protein, C-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}
Probab=11.03 E-value=1.4e+02 Score=23.37 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=26.5
Q ss_pred HHHhcCCCCcEEEEEecCCCCeeeeecccchhhHHHHhhccCceeE
Q psy2754 53 ATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITEL 98 (367)
Q Consensus 53 V~EFFsp~a~lR~~~~~~~g~K~FEI~~~~LPRyF~t~FeSGV~~m 98 (367)
+...|++||++. .-..+.+ +|+.+|-+||+.. ..|++-.
T Consensus 40 ~~~lFa~Dav~~-----~P~~~p~-~G~eaI~~f~~~~-~~~~~~~ 78 (142)
T d1m98a2 40 LISLFAEDGALQ-----PPFQKPI-VGKENTLRFFREE-CQNLKLI 78 (142)
T ss_dssp HHTTEEEEEEEE-----CTTSCCE-ESHHHHHHHHHHH-CTTCEEE
T ss_pred HHHHcCCCeEEe-----CCCCccc-cCHHHHHHHHHHh-cccceec
Confidence 457899999883 1223455 5999999999866 3455443
No 9
>d3er7a1 d.17.4.24 (A:5-122) Uncharacterized protein Exig0174 {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}
Probab=11.01 E-value=25 Score=27.67 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=24.6
Q ss_pred CCCCchHHHHHHHHHhcCCCCcEEEEEe
Q psy2754 41 TEESDNLWWDAFATEFFEDDATLTLTFC 68 (367)
Q Consensus 41 ~~~~di~yW~~FV~EFFsp~a~lR~~~~ 68 (367)
.+...+.-|..|+.+||..+..+||.+-
T Consensus 38 ~~~~G~~ai~sFf~~FF~~N~e~KHlwd 65 (118)
T d3er7a1 38 QEQHGIDAWKQFVRMVFTANQDIKHMYA 65 (118)
T ss_dssp EEEESHHHHHHHHHHHHHHEEEEEEEEC
T ss_pred ccccChHHHHHHHHHHHhcchHHHHHhc
Confidence 3567889999999999999999999765
No 10
>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476 {Pectobacterium atrosepticum [TaxId: 29471]}
Probab=11.00 E-value=2.5e+02 Score=19.46 Aligned_cols=94 Identities=12% Similarity=0.153 Sum_probs=52.4
Q ss_pred HHHhcCCCCcEEEEEecCCCCeeeeecccchhhHHHHhhccCceeEEeecCCCcccccCCceEEecCCcEEEEeec----
Q psy2754 53 ATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHG---- 128 (367)
Q Consensus 53 V~EFFsp~a~lR~~~~~~~g~K~FEI~~~~LPRyF~t~FeSGV~~mqlvLd~prE~l~ng~i~le~~~a~~vt~Y~---- 128 (367)
+..+|+++|++- ..+...+ .++..|--+|...|+.+...+.+.... .+.+..+.|.....+.
T Consensus 29 ~~~l~t~Dav~~-----~~~~~~~-~G~~~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~d~A~~~~~~~~~~~ 94 (132)
T d3d9ra1 29 VIATYTDDGVLM-----GPGRPAA-VGKDELAEVYLSVFETVGFDMAYEIKE--------VVQTSADWAFVRSATEGTET 94 (132)
T ss_dssp HHHTEEEEEEEE-----CTTSCCE-ESHHHHHHHHHHHHHHEEEEEEEEEEE--------EEEEETTEEEEEEEEEEEEE
T ss_pred HHHhcCCCeEEE-----ccCCcce-ehHHHHHHHHHHHhhcCCcceeeeccc--------eeeecCCceEEEEEEEEEEE
Confidence 345889999862 1222333 578888888888888776655444321 1223333332222111
Q ss_pred -CCcceEEEeeeeEEEEEe--cCccceeeeEEEee
Q psy2754 129 -KPMLTKVCTEGRLILEFT--FDDLMRIKSWHFAV 160 (367)
Q Consensus 129 -~~~~~~V~~eG~Lra~F~--~d~~lKIe~weF~~ 160 (367)
++....+...|+....|- .|.-.||-..+|..
T Consensus 95 ~~~~g~~~~~~~~~~~v~~r~~dG~Wki~~~~~s~ 129 (132)
T d3d9ra1 95 NKATGVVTPAAYQELFLLRKSATGSWQTARYCTSK 129 (132)
T ss_dssp ETTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred ecCCCcceecceeEEEEEEECCCCcEEEEEEEecC
Confidence 122345566677666665 34457888887765
Done!