Your job contains 1 sequence.
>psy2754
MIYWDAALICLGCVGVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDD
ATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQ
CTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQDPSML
EQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVA
PPGKRESQRPANKRRKRKGSQSGGAANSAPPAPSKKRSPGPNFSLASQDVMVVGEPSLMG
GEFGDEDERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDK
KSPAVSQ
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2754
(367 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NGI1 - symbol:LDB2 "LIM domain-binding protei... 1297 2.7e-132 1
UNIPROTKB|Q9W676 - symbol:LDB2 "LIM domain-binding protei... 1295 4.4e-132 1
UNIPROTKB|G5E9Y7 - symbol:LDB2 "LIM domain-binding protei... 1295 4.4e-132 1
UNIPROTKB|F6R129 - symbol:LDB2 "Uncharacterized protein" ... 1288 2.4e-131 1
UNIPROTKB|O43679 - symbol:LDB2 "LIM domain-binding protei... 1284 6.4e-131 1
UNIPROTKB|Q6NVL6 - symbol:ldb1 "LIM domain-binding protei... 1276 4.5e-130 1
UNIPROTKB|F1NI21 - symbol:LDB1 "LIM domain-binding protei... 1273 9.3e-130 1
MGI|MGI:894670 - symbol:Ldb2 "LIM domain binding 2" speci... 1273 9.3e-130 1
UNIPROTKB|F1PRG9 - symbol:LDB2 "Uncharacterized protein" ... 1269 2.5e-129 1
UNIPROTKB|F1NI09 - symbol:LDB1 "LIM domain-binding protei... 1262 1.4e-128 1
UNIPROTKB|F1NKP2 - symbol:LDB1 "LIM domain-binding protei... 1262 1.4e-128 1
UNIPROTKB|O42252 - symbol:LDB1 "LIM domain-binding protei... 1262 1.4e-128 1
UNIPROTKB|Q1EQW7 - symbol:ldb2 "LIM domain-binding protei... 1064 1.6e-128 2
UNIPROTKB|P70060 - symbol:ldb1 "LIM domain-binding protei... 1260 2.2e-128 1
UNIPROTKB|F1N4N0 - symbol:Bt.4553 "Uncharacterized protei... 1249 3.3e-127 1
UNIPROTKB|E2RH17 - symbol:LDB1 "Uncharacterized protein" ... 1249 3.3e-127 1
UNIPROTKB|F2Z5G6 - symbol:LDB1 "Uncharacterized protein" ... 1249 3.3e-127 1
FB|FBgn0013764 - symbol:Chi "Chip" species:7227 "Drosophi... 1244 1.1e-126 1
UNIPROTKB|Q86U70 - symbol:LDB1 "LIM domain-binding protei... 1238 4.8e-126 1
MGI|MGI:894762 - symbol:Ldb1 "LIM domain binding 1" speci... 1238 4.8e-126 1
RGD|1310359 - symbol:Ldb1 "LIM domain binding 1" species:... 1238 4.8e-126 1
ZFIN|ZDB-GENE-990415-138 - symbol:ldb1a "LIM-domain bindi... 1237 6.1e-126 1
ZFIN|ZDB-GENE-990415-135 - symbol:ldb1b "LIM-domain bindi... 1229 4.3e-125 1
UNIPROTKB|E1C373 - symbol:LDB2 "LIM domain-binding protei... 1222 2.4e-124 1
RGD|1307921 - symbol:Ldb2 "LIM domain binding 2" species:... 1197 1.1e-121 1
UNIPROTKB|F1NRA7 - symbol:LDB2 "LIM domain-binding protei... 1074 1.9e-110 2
UNIPROTKB|F1NI08 - symbol:LDB1 "LIM domain-binding protei... 1058 2.7e-109 2
UNIPROTKB|E9PFI4 - symbol:LDB2 "LIM domain-binding protei... 1079 3.4e-109 1
ZFIN|ZDB-GENE-990415-137 - symbol:ldb2b "LIM-domain bindi... 1055 1.2e-106 1
ZFIN|ZDB-GENE-990415-136 - symbol:ldb2a "LIM-domain bindi... 1035 1.6e-104 1
UNIPROTKB|D4A0D2 - symbol:Ldb2 "Protein Ldb2" species:101... 998 9.5e-103 2
UNIPROTKB|H0YA09 - symbol:LDB2 "LIM domain-binding protei... 973 5.8e-98 1
UNIPROTKB|I3LLH6 - symbol:LDB2 "Uncharacterized protein" ... 844 2.7e-84 1
UNIPROTKB|D6RAT1 - symbol:LDB2 "LIM domain-binding protei... 741 2.2e-73 1
UNIPROTKB|B7Z2D3 - symbol:LDB2 "cDNA FLJ52487, highly sim... 568 4.8e-55 1
UNIPROTKB|Q8I4H8 - symbol:ldb-1 "Protein LDB-1, isoform b... 319 4.6e-40 2
UNIPROTKB|G5EEL0 - symbol:ldb-1 "Protein LDB-1, isoform a... 319 5.5e-40 2
WB|WBGene00002261 - symbol:ldb-1 species:6239 "Caenorhabd... 319 8.4e-40 2
UNIPROTKB|Q9U3E2 - symbol:ldb-1 "Protein LDB-1, isoform c... 319 8.4e-40 2
UNIPROTKB|E7EX95 - symbol:LDB2 "LIM domain-binding protei... 305 3.5e-27 1
UNIPROTKB|E9PGU0 - symbol:LDB2 "LIM domain-binding protei... 303 5.7e-27 1
ASPGD|ASPL0000007122 - symbol:AN6264 species:162425 "Emer... 115 0.00056 1
>UNIPROTKB|F1NGI1 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0001942 "hair follicle development" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0010669
"epithelial structure maintenance" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IEA] [GO:0035019 "somatic stem cell
maintenance" evidence=IEA] [GO:0044089 "positive regulation of
cellular component biogenesis" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR002691 GO:GO:0045944 GO:GO:0005667
GO:GO:0003712 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
IPI:IPI00586244 OMA:LGNSSPW GO:GO:0044089 EMBL:AADN02015128
EMBL:AADN02015129 EMBL:AADN02015130 EMBL:AADN02015131
EMBL:AADN02015132 EMBL:AADN02015133 EMBL:AADN02015134
EMBL:AADN02015135 Ensembl:ENSGALT00000023380 ArrayExpress:F1NGI1
Uniprot:F1NGI1
Length = 371
Score = 1297 (461.6 bits), Expect = 2.7e-132, P = 2.7e-132
Identities = 245/357 (68%), Positives = 282/357 (78%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRHTPY QP+YR+YE+NKRLQ R+E+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQARSEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVC
Sbjct: 79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC 138
Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +LEQL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLEQLSKNITRMGLTN 198
Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP + +++P KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKR 257
Query: 255 RKRXXXXXXXXXXXXXXXXXXXXX----XXXNFSLASQDVMVVGEPSLMGGEFGDEDERL 310
RKR N SL+SQDVMVVGEP+LMGGEFGDEDERL
Sbjct: 258 RKRKNSTSSTSNSSAGNNANSTNSKKKSAAANLSLSSQDVMVVGEPTLMGGEFGDEDERL 317
Query: 311 ITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPAVSQ 367
ITRLENTQYDA AN +D + F++SP+ G +P P N + S+ +P SQ
Sbjct: 318 ITRLENTQYDA-ANGMDDEEDFNNSPALGNNSPWNSKPPANQETK--SENPTPQASQ 371
>UNIPROTKB|Q9W676 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030274 "LIM
domain binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002691 GO:GO:0005634 GO:GO:0003712
GO:GO:0030274 HSSP:P70662 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 PANTHER:PTHR10378 EMBL:AF069990 EMBL:AB250386
IPI:IPI00586244 IPI:IPI00775747 RefSeq:NP_990160.1 UniGene:Gga.3673
ProteinModelPortal:Q9W676 SMR:Q9W676 GeneID:395631 KEGG:gga:395631
CTD:9079 InParanoid:Q9W676 NextBio:20815704 Uniprot:Q9W676
Length = 371
Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
Identities = 245/357 (68%), Positives = 282/357 (78%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRHTPY QP+YR+YE+NKRLQ R+E+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQARSEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVC
Sbjct: 79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC 138
Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +LEQL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILPMHAQDPQVLEQLSKNITRMGLTN 198
Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP + +++P KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKR 257
Query: 255 RKRXXXXXXXXXXXXXXXXXXXXX----XXXNFSLASQDVMVVGEPSLMGGEFGDEDERL 310
RKR N SL+SQDVMVVGEP+LMGGEFGDEDERL
Sbjct: 258 RKRKNSTSSTSNSSAGNNANSTNSKKKSAAANLSLSSQDVMVVGEPTLMGGEFGDEDERL 317
Query: 311 ITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPAVSQ 367
ITRLENTQYDA AN +D + F++SP+ G +P P N + S+ +P SQ
Sbjct: 318 ITRLENTQYDA-ANGMDDEEDFNNSPALGNNSPWNSKPPANQETK--SENPTPQASQ 371
>UNIPROTKB|G5E9Y7 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 EMBL:CH471069 PANTHER:PTHR10378 UniGene:Hs.714330
HGNC:HGNC:6533 ChiTaRS:LDB2 EMBL:AC005690 EMBL:AC097515
EMBL:AC104656 EMBL:AC105353 EMBL:AC106894 ProteinModelPortal:G5E9Y7
SMR:G5E9Y7 Ensembl:ENST00000515064 ArrayExpress:G5E9Y7 Bgee:G5E9Y7
Uniprot:G5E9Y7
Length = 371
Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
Identities = 243/353 (68%), Positives = 283/353 (80%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRHTPY QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVC
Sbjct: 79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC 138
Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +L+QL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTN 198
Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP + +++P KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKR 257
Query: 255 RKRXXXXXXXXXXXXXXXXXXXXX----XXXNFSLASQDVMVVGEPSLMGGEFGDEDERL 310
RKR N SL+SQDVMVVGEP+LMGGEFGDEDERL
Sbjct: 258 RKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQDVMVVGEPTLMGGEFGDEDERL 317
Query: 311 ITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
ITRLENTQYDA AN +D + F++SP+ G +P P P++Q++ ++P
Sbjct: 318 ITRLENTQYDA-ANGMDDEEDFNNSPALGNNSPWNSKP----PATQETKSENP 365
>UNIPROTKB|F6R129 [details] [associations]
symbol:LDB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0044089 "positive
regulation of cellular component biogenesis" evidence=IEA]
[GO:0035019 "somatic stem cell maintenance" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0010669 "epithelial
structure maintenance" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0001942 "hair follicle
development" evidence=IEA] [GO:0030274 "LIM domain binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] InterPro:IPR002691 GO:GO:0045944 GO:GO:0005667
GO:GO:0001942 GO:GO:0003712 GO:GO:0035019 GO:GO:0010669
PANTHER:PTHR10378 GeneTree:ENSGT00390000005639 CTD:9079 OMA:LGNSSPW
GO:GO:0044089 EMBL:DAAA02018776 EMBL:DAAA02018777 EMBL:DAAA02018778
EMBL:DAAA02018779 EMBL:DAAA02018780 EMBL:DAAA02018781
EMBL:DAAA02018782 EMBL:DAAA02018783 EMBL:DAAA02018784
EMBL:DAAA02018785 EMBL:DAAA02018786 EMBL:DAAA02018787
EMBL:DAAA02018788 EMBL:DAAA02018789 EMBL:DAAA02018790
EMBL:DAAA02018791 EMBL:DAAA02018792 IPI:IPI00742582
RefSeq:NP_001040076.2 UniGene:Bt.11446 Ensembl:ENSBTAT00000018687
GeneID:617976 KEGG:bta:617976 NextBio:20900928 Uniprot:F6R129
Length = 370
Score = 1288 (458.5 bits), Expect = 2.4e-131, P = 2.4e-131
Identities = 242/353 (68%), Positives = 281/353 (79%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRHTPY QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQC MVT HGKPM TKVC
Sbjct: 79 TIGRTLIPRYFSTVFEGGVTDLYYVLKHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVC 138
Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +L+QL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTN 198
Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP +++P KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPP--EPTRQPTTKR 256
Query: 255 RKRXXXXXXXXXXXXXXXXXXXXX----XXXNFSLASQDVMVVGEPSLMGGEFGDEDERL 310
RKR N SL+SQDVMVVGEP+LMGGEFGDEDERL
Sbjct: 257 RKRKNSTSSTSNSSAGNAANSTGSKKKTTAANLSLSSQDVMVVGEPTLMGGEFGDEDERL 316
Query: 311 ITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
ITRLENTQYDA AN +D + F++SP+ G +P P P++Q++ ++P
Sbjct: 317 ITRLENTQYDA-ANGMDDEEDFTNSPALGNSSPWNSKP----PATQETKSENP 364
>UNIPROTKB|O43679 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0001942 "hair follicle development" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0010669 "epithelial structure maintenance" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0035019 "somatic
stem cell maintenance" evidence=IEA] [GO:0044089 "positive
regulation of cellular component biogenesis" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030274 "LIM domain
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR002691 GO:GO:0005634 GO:GO:0045944 GO:GO:0005667
GO:GO:0001942 GO:GO:0003712 GO:GO:0035019 GO:GO:0030274
GO:GO:0010669 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 OrthoDB:EOG4XWFXV PANTHER:PTHR10378 CTD:9079
EMBL:AF068651 EMBL:AF052389 EMBL:AF064492 EMBL:AF064493
EMBL:AF047337 EMBL:BC034019 IPI:IPI00014634 IPI:IPI00790687
IPI:IPI00855748 RefSeq:NP_001124306.1 RefSeq:NP_001281.1
UniGene:Hs.714330 ProteinModelPortal:O43679 SMR:O43679
DIP:DIP-24262N IntAct:O43679 MINT:MINT-233497 STRING:O43679
PhosphoSite:O43679 PRIDE:O43679 DNASU:9079 Ensembl:ENST00000304523
Ensembl:ENST00000441778 GeneID:9079 KEGG:hsa:9079 UCSC:uc003goz.3
UCSC:uc003gpa.3 UCSC:uc003gpb.3 GeneCards:GC04M016445
HGNC:HGNC:6533 HPA:CAB017544 MIM:603450 neXtProt:NX_O43679
PharmGKB:PA30317 InParanoid:O43679 OMA:LGNSSPW PhylomeDB:O43679
ChiTaRS:LDB2 GenomeRNAi:9079 NextBio:34017 ArrayExpress:O43679
Bgee:O43679 CleanEx:HS_LDB2 Genevestigator:O43679
GermOnline:ENSG00000169744 GO:GO:0044089 Uniprot:O43679
Length = 373
Score = 1284 (457.0 bits), Expect = 6.4e-131, P = 6.4e-131
Identities = 243/355 (68%), Positives = 283/355 (79%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRHTPY QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVC
Sbjct: 79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC 138
Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +L+QL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTN 198
Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP + +++P KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKR 257
Query: 255 RKRXXXXXXXXXXXXXXXXXXXXX----XXXNFSLASQ--DVMVVGEPSLMGGEFGDEDE 308
RKR N SL+SQ DVMVVGEP+LMGGEFGDEDE
Sbjct: 258 RKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDE 317
Query: 309 RLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
RLITRLENTQYDA AN +D + F++SP+ G +P P P++Q++ ++P
Sbjct: 318 RLITRLENTQYDA-ANGMDDEEDFNNSPALGNNSPWNSKP----PATQETKSENP 367
>UNIPROTKB|Q6NVL6 [details] [associations]
symbol:ldb1 "LIM domain-binding protein 1" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0030274 "LIM domain binding" evidence=ISS] [GO:0042803 "protein
homodimerization activity" evidence=ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR002691
GO:GO:0007275 GO:GO:0005634 GO:GO:0042803 GO:GO:0045944
GO:GO:0003712 GO:GO:0030274 HSSP:P70662 CTD:8861 eggNOG:NOG282114
HOGENOM:HOG000030908 HOVERGEN:HBG000135 KO:K15617 OrthoDB:EOG4XWFXV
PANTHER:PTHR10378 GeneTree:ENSGT00390000005639 EMBL:BC067989
RefSeq:NP_998843.1 UniGene:Str.5983 ProteinModelPortal:Q6NVL6
SMR:Q6NVL6 STRING:Q6NVL6 Ensembl:ENSXETT00000003881 GeneID:407886
KEGG:xtr:407886 Xenbase:XB-GENE-493239 Bgee:Q6NVL6 Uniprot:Q6NVL6
Length = 373
Score = 1276 (454.2 bits), Expect = 4.5e-130, P = 4.5e-130
Identities = 243/354 (68%), Positives = 277/354 (78%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 79
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKESFHN ++LDCDQCTMVT HGKPM T+
Sbjct: 80 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQ 139
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 140 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 199
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q P N
Sbjct: 200 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQAP-N 258
Query: 253 KRRKRXXXXXXXXXXXXXXXXXXXXXX---XXNFSLASQDVMVVGEPSLMGGEFGDEDER 309
KRRKR F+L+SQDVMVVGEP+LMGGEFGDEDER
Sbjct: 259 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQDVMVVGEPTLMGGEFGDEDER 318
Query: 310 LITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
LITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+S ++P
Sbjct: 319 LITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENP 367
>UNIPROTKB|F1NI21 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
EMBL:AADN02046426 EMBL:AADN02046427 EMBL:AADN02046428
EMBL:AADN02046429 EMBL:AADN02048363 EMBL:AADN02048364
IPI:IPI01017094 Ensembl:ENSGALT00000039405 Uniprot:F1NI21
Length = 366
Score = 1273 (453.2 bits), Expect = 9.3e-130, P = 9.3e-130
Identities = 242/354 (68%), Positives = 278/354 (78%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 13 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 72
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKESFHN ++LDCDQCTMVT HGKPM T+
Sbjct: 73 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQ 132
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 133 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 192
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q+P+
Sbjct: 193 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQQPS- 251
Query: 253 KRRKRXXXXXXXXXXXXXXXXXXXXXX---XXNFSLASQDVMVVGEPSLMGGEFGDEDER 309
KRRKR F+L+SQDVMVVGEP+LMGGEFGDEDER
Sbjct: 252 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQDVMVVGEPTLMGGEFGDEDER 311
Query: 310 LITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
LITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+S ++P
Sbjct: 312 LITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENP 360
>MGI|MGI:894670 [details] [associations]
symbol:Ldb2 "LIM domain binding 2" species:10090 "Mus
musculus" [GO:0000989 "transcription factor binding transcription
factor activity" evidence=IPI] [GO:0001942 "hair follicle
development" evidence=IGI] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005667 "transcription
factor complex" evidence=IDA] [GO:0010669 "epithelial structure
maintenance" evidence=IGI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0035019 "somatic stem cell maintenance" evidence=IGI]
[GO:0044089 "positive regulation of cellular component biogenesis"
evidence=IGI] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI] InterPro:IPR002691
MGI:MGI:894670 GO:GO:0045944 GO:GO:0005667 GO:GO:0001942
GO:GO:0003712 GO:GO:0035019 GO:GO:0000989 GO:GO:0030274
GO:GO:0010669 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 OrthoDB:EOG4XWFXV PANTHER:PTHR10378
GeneTree:ENSGT00390000005639 CTD:9079 OMA:LGNSSPW ChiTaRS:LDB2
GO:GO:0044089 EMBL:U89487 EMBL:U89489 EMBL:AK147160 EMBL:AK146860
EMBL:BC079611 IPI:IPI00116609 IPI:IPI00607962 IPI:IPI00798495
RefSeq:NP_001070866.1 RefSeq:NP_034828.3 UniGene:Mm.25785
ProteinModelPortal:O55203 SMR:O55203 DIP:DIP-46444N STRING:O55203
PhosphoSite:O55203 PRIDE:O55203 Ensembl:ENSMUST00000070748
GeneID:16826 KEGG:mmu:16826 UCSC:uc008xis.1 UCSC:uc008xit.1
UCSC:uc008xiu.1 InParanoid:O55203 NextBio:290728 Bgee:O55203
CleanEx:MM_LDB2 Genevestigator:O55203 GermOnline:ENSMUSG00000039706
Uniprot:O55203
Length = 373
Score = 1273 (453.2 bits), Expect = 9.3e-130, P = 9.3e-130
Identities = 244/361 (67%), Positives = 283/361 (78%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRHTPY QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQC MVT HGKPM TKVC
Sbjct: 79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVC 138
Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +L+QL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTN 198
Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP + +++P KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKR 257
Query: 255 RKRXXXXXXXXXXXXXXXXXXXXXX----XXNFSLASQ--DVMVVGEPSLMGGEFGDEDE 308
RKR + SLA+Q DVMVVGEP+LMGGEFGDEDE
Sbjct: 258 RKRKNSTSSTSNSSAGNTTNSAGSKKKTPAASLSLATQVPDVMVVGEPTLMGGEFGDEDE 317
Query: 309 RLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQD--SDKKSPAVS 366
RLITRLENTQYDA AN +D + F++SP+ G +P P P++Q+ S+ P S
Sbjct: 318 RLITRLENTQYDA-ANGMDDEEDFNNSPALGNNSPWNSKP----PATQETKSENAPPQAS 372
Query: 367 Q 367
Q
Sbjct: 373 Q 373
>UNIPROTKB|F1PRG9 [details] [associations]
symbol:LDB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003712 "transcription
cofactor activity" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
OMA:LGNSSPW EMBL:AAEX03002466 EMBL:AAEX03002467 EMBL:AAEX03002468
Ensembl:ENSCAFT00000024036 Uniprot:F1PRG9
Length = 372
Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
Identities = 241/356 (67%), Positives = 277/356 (77%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRHTPY QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQC MVT HGKPM TKVC
Sbjct: 79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVC 138
Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +L+QL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTN 198
Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP +++P KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPP--EPTRQPTTKR 256
Query: 255 RKRXXXXXXXXXXXXXXXXXXXXXX----XXNFSLASQ--DVMVVGEPSLMGGEFGDEDE 308
RKR N SL+SQ DVMVVGEP+LMGGEFGDEDE
Sbjct: 257 RKRKNSTSSTSNSSAGNNANSTGSKKKTPAANLSLSSQVPDVMVVGEPTLMGGEFGDEDE 316
Query: 309 RLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAP-DRGPPQGNTPSSQDSDKKSP 363
RLITRLENTQYDA AN +D + F+ P+ G +P PP S+ + ++P
Sbjct: 317 RLITRLENTQYDA-ANGVDDEEDFNSPPALGNSSPWSSKPPAAQETKSESAPPQAP 371
>UNIPROTKB|F1NI09 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000972 "transcription-dependent tethering of RNA polymerase II
gene DNA at nuclear periphery" evidence=IEA] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0001702 "gastrulation with mouth forming second"
evidence=IEA] [GO:0001942 "hair follicle development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005911 "cell-cell
junction" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0009948
"anterior/posterior axis specification" evidence=IEA] [GO:0010669
"epithelial structure maintenance" evidence=IEA] [GO:0016055 "Wnt
receptor signaling pathway" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0022607 "cellular component
assembly" evidence=IEA] [GO:0030274 "LIM domain binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0035019 "somatic stem
cell maintenance" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0043621 "protein
self-association" evidence=IEA] [GO:0043973 "histone H3-K4
acetylation" evidence=IEA] [GO:0045647 "negative regulation of
erythrocyte differentiation" evidence=IEA] [GO:0045785 "positive
regulation of cell adhesion" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0046985 "positive
regulation of hemoglobin biosynthetic process" evidence=IEA]
[GO:0060322 "head development" evidence=IEA] InterPro:IPR002691
GO:GO:0045892 GO:GO:0016055 GO:GO:0045944 GO:GO:0003682
GO:GO:0005911 GO:GO:0005667 GO:GO:0000790 GO:GO:0006366
GO:GO:0045785 GO:GO:0003712 GO:GO:0001158 GO:GO:0032784
GO:GO:0045647 GO:GO:0046985 PANTHER:PTHR10378 OMA:GSNSPWN
GO:GO:0022607 GO:GO:0043973 GO:GO:0000972
GeneTree:ENSGT00390000005639 EMBL:AADN02046426 EMBL:AADN02046427
EMBL:AADN02046428 EMBL:AADN02046429 EMBL:AADN02048363
EMBL:AADN02048364 IPI:IPI00818108 Ensembl:ENSGALT00000039410
Uniprot:F1NI09
Length = 377
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 243/357 (68%), Positives = 277/357 (77%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 79
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKESFHN ++LDCDQCTMVT HGKPM T+
Sbjct: 80 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQ 139
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 140 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 199
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPA- 251
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPPG E R
Sbjct: 200 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPGPAEPARQQP 259
Query: 252 NKRRKRXXXXXXXXXXXXXXXXXXXXXX---XXNFSLASQ--DVMVVGEPSLMGGEFGDE 306
+KRRKR F+L+SQ DVMVVGEP+LMGGEFGDE
Sbjct: 260 SKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDE 319
Query: 307 DERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
DERLITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+S ++P
Sbjct: 320 DERLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENP 371
>UNIPROTKB|F1NKP2 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 IPI:IPI00594578 PANTHER:PTHR10378
GeneTree:ENSGT00390000005639 EMBL:AADN02046426 EMBL:AADN02046427
EMBL:AADN02046428 EMBL:AADN02046429 EMBL:AADN02048363
EMBL:AADN02048364 Ensembl:ENSGALT00000012362 Uniprot:F1NKP2
Length = 368
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 242/356 (67%), Positives = 278/356 (78%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 13 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 72
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKESFHN ++LDCDQCTMVT HGKPM T+
Sbjct: 73 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQ 132
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 133 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 192
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q+P+
Sbjct: 193 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQQPS- 251
Query: 253 KRRKRXXXXXXXXXXXXXXXXXXXXXX---XXNFSLASQ--DVMVVGEPSLMGGEFGDED 307
KRRKR F+L+SQ DVMVVGEP+LMGGEFGDED
Sbjct: 252 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDED 311
Query: 308 ERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
ERLITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+S ++P
Sbjct: 312 ERLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENP 362
>UNIPROTKB|O42252 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0043234 "protein complex" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0030182 "neuron
differentiation" evidence=ISS] [GO:0030274 "LIM domain binding"
evidence=ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISS] [GO:0045647 "negative regulation of erythrocyte
differentiation" evidence=ISS] [GO:0009948 "anterior/posterior axis
specification" evidence=ISS] [GO:0016055 "Wnt receptor signaling
pathway" evidence=ISS] InterPro:IPR002691 GO:GO:0005634
GO:GO:0043234 GO:GO:0042803 GO:GO:0016055 GO:GO:0030182
GO:GO:0003712 GO:GO:0009948 GO:GO:0030274 GO:GO:0045647
EMBL:AF026037 EMBL:AF026038 EMBL:AF069991 EMBL:AB250385
IPI:IPI00594578 IPI:IPI00821941 IPI:IPI00822885 IPI:IPI00845165
RefSeq:NP_990401.1 UniGene:Gga.377 HSSP:P70662
ProteinModelPortal:O42252 SMR:O42252 PRIDE:O42252 GeneID:395952
KEGG:gga:395952 CTD:8861 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 KO:K15617 OrthoDB:EOG4XWFXV NextBio:20816017
PANTHER:PTHR10378 Uniprot:O42252
Length = 411
Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
Identities = 242/356 (67%), Positives = 278/356 (78%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 56 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 115
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKESFHN ++LDCDQCTMVT HGKPM T+
Sbjct: 116 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQ 175
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 176 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 235
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q+P+
Sbjct: 236 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQQPS- 294
Query: 253 KRRKRXXXXXXXXXXXXXXXXXXXXXX---XXNFSLASQ--DVMVVGEPSLMGGEFGDED 307
KRRKR F+L+SQ DVMVVGEP+LMGGEFGDED
Sbjct: 295 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDED 354
Query: 308 ERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
ERLITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+S ++P
Sbjct: 355 ERLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENP 405
>UNIPROTKB|Q1EQW7 [details] [associations]
symbol:ldb2 "LIM domain-binding protein 2" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0030274 "LIM domain binding"
evidence=ISS] InterPro:IPR002691 GO:GO:0005634 GO:GO:0003712
GO:GO:0030274 HOVERGEN:HBG000135 PANTHER:PTHR10378 CTD:9079
EMBL:AB250388 EMBL:AB250389 RefSeq:NP_001089184.1 UniGene:Xl.57032
ProteinModelPortal:Q1EQW7 SMR:Q1EQW7 GeneID:734228 KEGG:xla:734228
Xenbase:XB-GENE-490283 Uniprot:Q1EQW7
Length = 398
Score = 1064 (379.6 bits), Expect = 1.6e-128, Sum P(2) = 1.6e-128
Identities = 192/243 (79%), Positives = 218/243 (89%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRH PY QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19 RRHAPYMVQPEYRIYEMNKRLQTRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVC
Sbjct: 79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC 138
Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
TEGRLILEFTFDDLMRIK+WHF +RQ+REL+PR+I+ M QDP +LEQL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELLPRSILAMHAQDPQVLEQLSKNITRMGLTN 198
Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP + +++ KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQTTTKR 257
Query: 255 RKR 257
RKR
Sbjct: 258 RKR 260
Score = 218 (81.8 bits), Expect = 1.6e-128, Sum P(2) = 1.6e-128
Identities = 45/76 (59%), Positives = 54/76 (71%)
Query: 289 DVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAP--DRG 346
DVMVVGEP+LMGGEFGDEDERLITRLENTQYDA AN +D + F+ SP+ G +P +
Sbjct: 323 DVMVVGEPTLMGGEFGDEDERLITRLENTQYDA-ANGMDDEEDFNSSPALGNNSPWNSKP 381
Query: 347 PPQGNTPSSQDSDKKS 362
PP T S + + S
Sbjct: 382 PPNAETKSDNPTQQAS 397
>UNIPROTKB|P70060 [details] [associations]
symbol:ldb1 "LIM domain-binding protein 1" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0030274 "LIM domain binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] InterPro:IPR002691
GO:GO:0007275 GO:GO:0005634 GO:GO:0042803 GO:GO:0045944
GO:GO:0003712 CTD:8861 HOVERGEN:HBG000135 KO:K15617
PANTHER:PTHR10378 EMBL:U74360 EMBL:AB250387 EMBL:BC044043
RefSeq:NP_001080549.1 RefSeq:NP_001090450.1 UniGene:Xl.4461
UniGene:Xl.76023 ProteinModelPortal:P70060 SMR:P70060 GeneID:380241
GeneID:779363 KEGG:xla:380241 KEGG:xla:779363 CTD:779363
Xenbase:XB-GENE-866237 Uniprot:P70060
Length = 375
Score = 1260 (448.6 bits), Expect = 2.2e-128, P = 2.2e-128
Identities = 242/356 (67%), Positives = 277/356 (77%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 79
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKESFHN ++LDCDQCTMVT HGKPM T+
Sbjct: 80 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQ 139
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 140 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 199
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q P+
Sbjct: 200 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQAPS- 258
Query: 253 KRRKRXXXXXXXXXXXXXXXXXXXXXX---XXNFSLASQ--DVMVVGEPSLMGGEFGDED 307
KRRKR F+L+SQ DVMVVGEP+LMGGEFGDED
Sbjct: 259 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDED 318
Query: 308 ERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
ERLITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+S ++P
Sbjct: 319 ERLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENP 369
>UNIPROTKB|F1N4N0 [details] [associations]
symbol:Bt.4553 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060322 "head development" evidence=IEA] [GO:0046985
"positive regulation of hemoglobin biosynthetic process"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045785 "positive regulation of cell adhesion" evidence=IEA]
[GO:0045647 "negative regulation of erythrocyte differentiation"
evidence=IEA] [GO:0043973 "histone H3-K4 acetylation" evidence=IEA]
[GO:0043621 "protein self-association" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA] [GO:0035019
"somatic stem cell maintenance" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0022607 "cellular component assembly" evidence=IEA] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0016055 "Wnt
receptor signaling pathway" evidence=IEA] [GO:0010669 "epithelial
structure maintenance" evidence=IEA] [GO:0009948
"anterior/posterior axis specification" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005911 "cell-cell junction" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0001942 "hair follicle development"
evidence=IEA] [GO:0001702 "gastrulation with mouth forming second"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0000972
"transcription-dependent tethering of RNA polymerase II gene DNA at
nuclear periphery" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] InterPro:IPR002691 GO:GO:0045892 GO:GO:0016055
GO:GO:0045944 GO:GO:0003682 GO:GO:0005911 GO:GO:0005667
GO:GO:0000790 GO:GO:0006366 GO:GO:0001942 GO:GO:0001702
GO:GO:0045785 GO:GO:0003712 GO:GO:0035019 GO:GO:0009948
GO:GO:0001158 GO:GO:0021702 GO:GO:0060322 GO:GO:0010669
GO:GO:0032784 GO:GO:0045647 GO:GO:0046985 PANTHER:PTHR10378
OMA:GSNSPWN GO:GO:0022607 GO:GO:0043973 GO:GO:0000972
GeneTree:ENSGT00390000005639 EMBL:DAAA02058995 EMBL:DAAA02058997
EMBL:DAAA02058996 IPI:IPI00694995 Ensembl:ENSBTAT00000007599
Uniprot:F1N4N0
Length = 467
Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
Identities = 239/355 (67%), Positives = 276/355 (77%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 112 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 171
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKE+FH+ ++LDCDQ +MVT HGKPM T+
Sbjct: 172 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQ 231
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 232 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 291
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPA- 251
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPPG E R
Sbjct: 292 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPGTAEPARQQP 351
Query: 252 NKRRKRXXXXXXXXXXXXXXXXXXXXXX---XXNFSLASQDVMVVGEPSLMGGEFGDEDE 308
+KRRKR F+L+SQDVMVVGEP+LMGGEFGDEDE
Sbjct: 352 SKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQDVMVVGEPTLMGGEFGDEDE 411
Query: 309 RLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
RLITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+S ++P
Sbjct: 412 RLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENP 461
>UNIPROTKB|E2RH17 [details] [associations]
symbol:LDB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003712 "transcription
cofactor activity" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 OMA:GSNSPWN
GeneTree:ENSGT00390000005639 EMBL:AAEX03015485
Ensembl:ENSCAFT00000015927 Uniprot:E2RH17
Length = 468
Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
Identities = 239/355 (67%), Positives = 276/355 (77%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 113 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 172
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKE+FH+ ++LDCDQ +MVT HGKPM T+
Sbjct: 173 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQ 232
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 233 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 292
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPA- 251
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPPG E R
Sbjct: 293 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPGTAEPARQQP 352
Query: 252 NKRRKRXXXXXXXXXXXXXXXXXXXXXX---XXNFSLASQDVMVVGEPSLMGGEFGDEDE 308
+KRRKR F+L+SQDVMVVGEP+LMGGEFGDEDE
Sbjct: 353 SKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQDVMVVGEPTLMGGEFGDEDE 412
Query: 309 RLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
RLITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+S ++P
Sbjct: 413 RLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENP 462
>UNIPROTKB|F2Z5G6 [details] [associations]
symbol:LDB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060322 "head development" evidence=IEA] [GO:0046985
"positive regulation of hemoglobin biosynthetic process"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045785 "positive regulation of cell adhesion" evidence=IEA]
[GO:0045647 "negative regulation of erythrocyte differentiation"
evidence=IEA] [GO:0043973 "histone H3-K4 acetylation" evidence=IEA]
[GO:0043621 "protein self-association" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA] [GO:0035019
"somatic stem cell maintenance" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0022607 "cellular component assembly" evidence=IEA] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0016055 "Wnt
receptor signaling pathway" evidence=IEA] [GO:0010669 "epithelial
structure maintenance" evidence=IEA] [GO:0009948
"anterior/posterior axis specification" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005911 "cell-cell junction" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0001942 "hair follicle development"
evidence=IEA] [GO:0001702 "gastrulation with mouth forming second"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0000972
"transcription-dependent tethering of RNA polymerase II gene DNA at
nuclear periphery" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] InterPro:IPR002691 GO:GO:0045892 GO:GO:0016055
GO:GO:0045944 GO:GO:0003682 GO:GO:0005911 GO:GO:0005667
GO:GO:0000790 GO:GO:0006366 GO:GO:0001942 GO:GO:0001702
GO:GO:0045785 GO:GO:0003712 GO:GO:0035019 GO:GO:0009948
GO:GO:0001158 GO:GO:0021702 GO:GO:0060322 GO:GO:0010669
GO:GO:0032784 GO:GO:0045647 GO:GO:0046985 PANTHER:PTHR10378
OMA:GSNSPWN GO:GO:0022607 GO:GO:0043973 GO:GO:0000972
GeneTree:ENSGT00390000005639 EMBL:CT737175
ProteinModelPortal:F2Z5G6 SMR:F2Z5G6 Ensembl:ENSSSCT00000011567
Uniprot:F2Z5G6
Length = 373
Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
Identities = 238/354 (67%), Positives = 277/354 (78%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 79
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKE+FH+ ++LDCDQ +MVT HGKPM T+
Sbjct: 80 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQ 139
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 140 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 199
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q+P+
Sbjct: 200 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQQPS- 258
Query: 253 KRRKRXXXXXXXXXXXXXXXXXXXXXX---XXNFSLASQDVMVVGEPSLMGGEFGDEDER 309
KRRKR F+L+SQDVMVVGEP+LMGGEFGDEDER
Sbjct: 259 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQDVMVVGEPTLMGGEFGDEDER 318
Query: 310 LITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
LITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+S ++P
Sbjct: 319 LITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENP 367
>FB|FBgn0013764 [details] [associations]
symbol:Chi "Chip" species:7227 "Drosophila melanogaster"
[GO:0006351 "transcription, DNA-dependent" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007350 "blastoderm
segmentation" evidence=TAS] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0030274 "LIM domain binding"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008134 "transcription factor binding"
evidence=IPI] [GO:0001085 "RNA polymerase II transcription factor
binding" evidence=IPI] [GO:0008407 "chaeta morphogenesis"
evidence=IMP] [GO:0006911 "phagocytosis, engulfment" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0007563
"regulation of eclosion" evidence=IMP] [GO:0022416 "chaeta
development" evidence=IMP] InterPro:IPR002691 EMBL:AE013599
GO:GO:0005634 GO:GO:0007411 GO:GO:0045893 GO:GO:0006911
GO:GO:0006351 GO:GO:0003712 GO:GO:0007476 GO:GO:0008407
GO:GO:0070983 GO:GO:0007350 GO:GO:0007563 KO:K15617
PANTHER:PTHR10378 GeneTree:ENSGT00390000005639 UniGene:Dm.6987
GeneID:37837 KEGG:dme:Dmel_CG3924 CTD:37837 FlyBase:FBgn0013764
GenomeRNAi:37837 NextBio:805617 EMBL:BT125015 RefSeq:NP_726403.2
SMR:Q7KVG9 STRING:Q7KVG9 EnsemblMetazoa:FBtr0072192 UCSC:CG3924-RB
InParanoid:Q7KVG9 OMA:GHRELIP Uniprot:Q7KVG9
Length = 596
Score = 1244 (443.0 bits), Expect = 1.1e-126, P = 1.1e-126
Identities = 237/355 (66%), Positives = 271/355 (76%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G RRH YF ++RV+ELNKRLQQR EESDN WWD+F TEFFEDDA LT+ FCLEDGPK
Sbjct: 224 GFRRHNSYFSHTEHRVFELNKRLQQRNEESDNCWWDSFTTEFFEDDARLTILFCLEDGPK 283
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPR+FRSI++GG+++LY+ LKH KESFHNTSITLDCDQCT++T HGKP TK
Sbjct: 284 RYTIGRTLIPRFFRSIYEGGVSDLYFQLKHAKESFHNTSITLDCDQCTVITQHGKPFFTK 343
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQ---DPSMLEQLTKNITRQG 191
VC + RLILEF +DD MRIKSWH ++ HREL+PR+++G DP +L+Q+TKNITR G
Sbjct: 344 VCADARLILEFMYDDYMRIKSWHMTIKGHRELIPRSVIGTSLPPDPMLLDQITKNITRAG 403
Query: 192 ITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPA 251
ITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGK++ QRP
Sbjct: 404 ITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKKDPQRPP 463
Query: 252 NKRRKRXXXXXXXXXXXXX--XXXXXXXXXXXNFSLASQDVMVVGEPSLMGGEFGDEDER 309
NKRRKR +FSL+SQDVMVVGEP+LMGGEFG+EDER
Sbjct: 464 NKRRKRKGSNSGGGNNSNTPPVTNQKRSPSGPSFSLSSQDVMVVGEPTLMGGEFGEEDER 523
Query: 310 LITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPA 364
LITRLENTQYD G N ++HD H G G D P G+ P S D PA
Sbjct: 524 LITRLENTQYD-GTNAVEHDNHT------GFGHAD-SPISGSNPWSIDRAGAIPA 570
Score = 242 (90.2 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 59/102 (57%), Positives = 67/102 (65%)
Query: 282 NFSLASQDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHDPH--F--SDSP- 336
+FSL+SQDVMVVGEP+LMGGEFG+EDERLITRLENTQYD G N ++HD H F +DSP
Sbjct: 496 SFSLSSQDVMVVGEPTLMGGEFGEEDERLITRLENTQYD-GTNAVEHDNHTGFGHADSPI 554
Query: 337 ----SWG---GGAPDRGPPQGNTPSSQ----DSDKKSPAVSQ 367
W GA P G P + D DKKSP VSQ
Sbjct: 555 SGSNPWSIDRAGAIPASPGNGAAPQNNANISDIDKKSPIVSQ 596
>UNIPROTKB|Q86U70 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9606
"Homo sapiens" [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0001702 "gastrulation with mouth forming second"
evidence=IEA] [GO:0001942 "hair follicle development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005911
"cell-cell junction" evidence=IEA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0009948
"anterior/posterior axis specification" evidence=IEA] [GO:0010669
"epithelial structure maintenance" evidence=IEA] [GO:0016055 "Wnt
receptor signaling pathway" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0022607 "cellular component
assembly" evidence=IEA] [GO:0035019 "somatic stem cell maintenance"
evidence=IEA] [GO:0043621 "protein self-association" evidence=IEA]
[GO:0045785 "positive regulation of cell adhesion" evidence=IEA]
[GO:0060322 "head development" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=NAS] [GO:0006351
"transcription, DNA-dependent" evidence=NAS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISS] [GO:0030182 "neuron
differentiation" evidence=ISS] [GO:0030274 "LIM domain binding"
evidence=ISS;IPI] [GO:0042803 "protein homodimerization activity"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045647 "negative regulation of erythrocyte differentiation"
evidence=ISS] [GO:0003714 "transcription corepressor activity"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS;IMP]
[GO:0043973 "histone H3-K4 acetylation" evidence=ISS] [GO:0046985
"positive regulation of hemoglobin biosynthetic process"
evidence=ISS] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=ISS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IPI] [GO:0000972
"transcription-dependent tethering of RNA polymerase II gene DNA at
nuclear periphery" evidence=ISS] InterPro:IPR002691 GO:GO:0003714
GO:GO:0045892 GO:GO:0042803 GO:GO:0016055 GO:GO:0030182
GO:GO:0045944 GO:GO:0006351 GO:GO:0003682 GO:GO:0005911
GO:GO:0005667 GO:GO:0000790 GO:GO:0006366 GO:GO:0001942
GO:GO:0001702 GO:GO:0045785 GO:GO:0035019 GO:GO:0009948
GO:GO:0001158 GO:GO:0021702 GO:GO:0060322 GO:GO:0030274
GO:GO:0010669 GO:GO:0032784 GO:GO:0045647 EMBL:AL500527
GO:GO:0046985 CTD:8861 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 KO:K15617 OrthoDB:EOG4XWFXV PANTHER:PTHR10378
EMBL:AF068652 EMBL:AJ243098 EMBL:AB016485 EMBL:AB250384
EMBL:AF064491 EMBL:BT007054 EMBL:AK300588 EMBL:BC000482
EMBL:BC009246 IPI:IPI00428954 IPI:IPI00760574 IPI:IPI00856078
RefSeq:NP_001106878.1 RefSeq:NP_003884.1 UniGene:Hs.454418 PDB:2XJY
PDB:2XJZ PDBsum:2XJY PDBsum:2XJZ ProteinModelPortal:Q86U70
SMR:Q86U70 DIP:DIP-31826N IntAct:Q86U70 MINT:MINT-233462
STRING:Q86U70 PhosphoSite:Q86U70 DMDM:158518615 PaxDb:Q86U70
PRIDE:Q86U70 DNASU:8861 Ensembl:ENST00000361198
Ensembl:ENST00000425280 GeneID:8861 KEGG:hsa:8861 UCSC:uc001kuk.4
UCSC:uc001kul.3 GeneCards:GC10M103857 H-InvDB:HIX0009148
HGNC:HGNC:6532 HPA:HPA034488 MIM:603451 neXtProt:NX_Q86U70
PharmGKB:PA30316 InParanoid:Q86U70 OMA:GSNSPWN
EvolutionaryTrace:Q86U70 GenomeRNAi:8861 NextBio:33273 Bgee:Q86U70
CleanEx:HS_LDB1 Genevestigator:Q86U70 GermOnline:ENSG00000198728
GO:GO:0022607 GO:GO:0043973 GO:GO:0000972 Uniprot:Q86U70
Length = 411
Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
Identities = 238/356 (66%), Positives = 277/356 (77%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 56 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 115
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKE+FH+ ++LDCDQ +MVT HGKPM T+
Sbjct: 116 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQ 175
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 176 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 235
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q+P+
Sbjct: 236 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPS- 294
Query: 253 KRRKRXXXXXXXXXXXXXXXXXXXXXX---XXNFSLASQ--DVMVVGEPSLMGGEFGDED 307
KRRKR F+L+SQ DVMVVGEP+LMGGEFGDED
Sbjct: 295 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDED 354
Query: 308 ERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
ERLITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+S ++P
Sbjct: 355 ERLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENP 405
>MGI|MGI:894762 [details] [associations]
symbol:Ldb1 "LIM domain binding 1" species:10090 "Mus
musculus" [GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000972
"transcription-dependent tethering of RNA polymerase II gene DNA at
nuclear periphery" evidence=IMP] [GO:0000989 "transcription factor
binding transcription factor activity" evidence=IPI] [GO:0001102
"RNA polymerase II activating transcription factor binding"
evidence=ISO] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IDA] [GO:0001702 "gastrulation with mouth forming second"
evidence=IMP] [GO:0001942 "hair follicle development" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667 "transcription
factor complex" evidence=ISO] [GO:0005911 "cell-cell junction"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0009948 "anterior/posterior axis
specification" evidence=IMP] [GO:0010669 "epithelial structure
maintenance" evidence=IGI] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0021549 "cerebellum development" evidence=IMP] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=IMP]
[GO:0022607 "cellular component assembly" evidence=IGI] [GO:0030274
"LIM domain binding" evidence=ISO;IDA;IPI] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IMP]
[GO:0035019 "somatic stem cell maintenance" evidence=IGI]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0043234 "protein complex" evidence=IDA;IPI] [GO:0043621
"protein self-association" evidence=IPI] [GO:0043973 "histone H3-K4
acetylation" evidence=IMP] [GO:0044451 "nucleoplasm part"
evidence=IDA] [GO:0045647 "negative regulation of erythrocyte
differentiation" evidence=IMP] [GO:0045785 "positive regulation of
cell adhesion" evidence=IGI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO;IGI;IMP] [GO:0046985 "positive regulation of
hemoglobin biosynthetic process" evidence=IMP] [GO:0060319
"primitive erythrocyte differentiation" evidence=TAS] [GO:0060322
"head development" evidence=IGI] InterPro:IPR002691 MGI:MGI:894762
GO:GO:0045892 GO:GO:0043234 GO:GO:0042803 GO:GO:0016055
GO:GO:0045944 GO:GO:0003682 GO:GO:0005911 GO:GO:0005667
GO:GO:0000790 GO:GO:0006366 GO:GO:0001942 GO:GO:0001702
GO:GO:0045785 GO:GO:0003712 GO:GO:0035019 GO:GO:0009948
GO:GO:0001158 GO:GO:0000989 GO:GO:0021702 GO:GO:0060322
GO:GO:0030274 GO:GO:0010669 GO:GO:0032784 GO:GO:0060319
GO:GO:0045647 PDB:2L6Y PDB:2L6Z PDBsum:2L6Y PDBsum:2L6Z
GO:GO:0046985 CTD:8861 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 KO:K15617 OrthoDB:EOG4XWFXV PANTHER:PTHR10378
OMA:GSNSPWN GO:GO:0022607 GO:GO:0043973 GO:GO:0000972 EMBL:U70375
EMBL:U69270 EMBL:U89488 EMBL:AF030333 EMBL:AF024524 EMBL:AB250383
EMBL:BC013624 IPI:IPI00111789 IPI:IPI00624850 IPI:IPI00762229
RefSeq:NP_001106879.1 RefSeq:NP_034827.1 UniGene:Mm.327442 PDB:1J2O
PDB:1M3V PDB:1RUT PDB:2JTN PDB:2LXD PDBsum:1J2O PDBsum:1M3V
PDBsum:1RUT PDBsum:2JTN PDBsum:2LXD ProteinModelPortal:P70662
SMR:P70662 IntAct:P70662 MINT:MINT-2779250 STRING:P70662
PhosphoSite:P70662 PRIDE:P70662 DNASU:16825
Ensembl:ENSMUST00000026252 Ensembl:ENSMUST00000056931
Ensembl:ENSMUST00000137771 Ensembl:ENSMUST00000156585 GeneID:16825
KEGG:mmu:16825 UCSC:uc008hrz.1 UCSC:uc008hsa.1 UCSC:uc012bmr.1
GeneTree:ENSGT00390000005639 InParanoid:P70662 ChiTaRS:LDB1
EvolutionaryTrace:P70662 NextBio:290724 Bgee:P70662 CleanEx:MM_LDB1
Genevestigator:P70662 GermOnline:ENSMUSG00000025223 GO:GO:0044451
Uniprot:P70662
Length = 411
Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
Identities = 238/356 (66%), Positives = 277/356 (77%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 56 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 115
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKE+FH+ ++LDCDQ +MVT HGKPM T+
Sbjct: 116 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQ 175
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 176 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 235
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q+P+
Sbjct: 236 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQQPS- 294
Query: 253 KRRKRXXXXXXXXXXXXXXXXXXXXXX---XXNFSLASQ--DVMVVGEPSLMGGEFGDED 307
KRRKR F+L+SQ DVMVVGEP+LMGGEFGDED
Sbjct: 295 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDED 354
Query: 308 ERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
ERLITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+S ++P
Sbjct: 355 ERLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENP 405
>RGD|1310359 [details] [associations]
symbol:Ldb1 "LIM domain binding 1" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA;ISO]
[GO:0000972 "transcription-dependent tethering of RNA polymerase II
gene DNA at nuclear periphery" evidence=IEA;ISO] [GO:0000989
"transcription factor binding transcription factor activity"
evidence=ISO] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA;ISO] [GO:0001158
"enhancer sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001702 "gastrulation with mouth forming second"
evidence=IEA;ISO] [GO:0001942 "hair follicle development"
evidence=IEA;ISO] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005667 "transcription factor complex"
evidence=IEA;ISO] [GO:0005911 "cell-cell junction"
evidence=IEA;ISO] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;ISO] [GO:0009948 "anterior/posterior axis
specification" evidence=IEA;ISO] [GO:0010669 "epithelial structure
maintenance" evidence=IEA;ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IEA;ISO] [GO:0021549 "cerebellum development"
evidence=ISO] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA;ISO] [GO:0022607 "cellular component
assembly" evidence=IEA;ISO] [GO:0030274 "LIM domain binding"
evidence=IEA;ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA;ISO] [GO:0035019 "somatic
stem cell maintenance" evidence=IEA;ISO] [GO:0042803 "protein
homodimerization activity" evidence=IEA;ISO] [GO:0043234 "protein
complex" evidence=ISO] [GO:0043621 "protein self-association"
evidence=IEA;ISO] [GO:0043973 "histone H3-K4 acetylation"
evidence=IEA;ISO] [GO:0044451 "nucleoplasm part" evidence=ISO]
[GO:0045647 "negative regulation of erythrocyte differentiation"
evidence=IEA;ISO] [GO:0045785 "positive regulation of cell
adhesion" evidence=IEA;ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA;ISO] [GO:0046985 "positive regulation of
hemoglobin biosynthetic process" evidence=IEA;ISO] [GO:0060322
"head development" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=ISO] InterPro:IPR002691 RGD:1310359 GO:GO:0005634
GO:GO:0003712 EMBL:CH473986 CTD:8861 KO:K15617 PANTHER:PTHR10378
GeneTree:ENSGT00390000005639 IPI:IPI00951331 RefSeq:NP_001101071.1
UniGene:Rn.102427 Ensembl:ENSRNOT00000040904 GeneID:309447
KEGG:rno:309447 UCSC:RGD:1310359 NextBio:660792 Uniprot:D3ZT89
Length = 375
Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
Identities = 238/356 (66%), Positives = 277/356 (77%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 79
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKE+FH+ ++LDCDQ +MVT HGKPM T+
Sbjct: 80 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQ 139
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 140 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 199
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q+P+
Sbjct: 200 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQQPS- 258
Query: 253 KRRKRXXXXXXXXXXXXXXXXXXXXXX---XXNFSLASQ--DVMVVGEPSLMGGEFGDED 307
KRRKR F+L+SQ DVMVVGEP+LMGGEFGDED
Sbjct: 259 KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDED 318
Query: 308 ERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
ERLITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+S ++P
Sbjct: 319 ERLITRLENTQFDA-ANGIDDEDSFNNSPALGANSPWNSKP----PSSQESKSENP 369
>ZFIN|ZDB-GENE-990415-138 [details] [associations]
symbol:ldb1a "LIM-domain binding factor 1a"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0030274 "LIM domain binding" evidence=IEA;ISS;IDA] [GO:0003712
"transcription cofactor activity" evidence=IEA] [GO:0046983
"protein dimerization activity" evidence=IDA] InterPro:IPR002691
ZFIN:ZDB-GENE-990415-138 GO:GO:0005634 GO:GO:0046983 GO:GO:0003712
GO:GO:0030274 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
EMBL:CU640488 IPI:IPI00509348 Ensembl:ENSDART00000126845
ArrayExpress:F1R491 Bgee:F1R491 Uniprot:F1R491
Length = 375
Score = 1237 (440.5 bits), Expect = 6.1e-126, P = 6.1e-126
Identities = 241/357 (67%), Positives = 277/357 (77%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TE+ DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEDCDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 79
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TEL+Y LKHPKESFHN ++LDCDQCTMVT +GKPM T+
Sbjct: 80 RYTIGRTLIPRYFRSIFEGGATELFYVLKHPKESFHNNFVSLDCDQCTMVTQNGKPMFTQ 139
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHRE+VPR+I+ M QDP ML+QL+KNITR G+
Sbjct: 140 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHREVVPRSILAMHAQDPQMLDQLSKNITRCGL 199
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q P N
Sbjct: 200 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQAP-N 258
Query: 253 KRRKRXXXXXXXXXXXXXXXXXXXXXX---XXNFSLASQ--DVMVVGEPSLMGGEFGDED 307
KRRKR +F+L+SQ DVMVVGEP+LMGGEFGDED
Sbjct: 259 KRRKRKMSGGSTMSSGGGNNNNSNSKKKSPASSFALSSQVPDVMVVGEPTLMGGEFGDED 318
Query: 308 ERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAP--DRGPP--QG--NTPSSQDS 358
ERLITRLENTQ+DA AN +D + F+ SP+ G +P + P QG + PSSQ S
Sbjct: 319 ERLITRLENTQFDA-ANGIDDEDSFNSSPTMGTNSPWNSKAPSSQQGKNDNPSSQSS 374
>ZFIN|ZDB-GENE-990415-135 [details] [associations]
symbol:ldb1b "LIM-domain binding factor 1b"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030274 "LIM domain binding" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] InterPro:IPR002691
ZFIN:ZDB-GENE-990415-135 GO:GO:0005634 GO:GO:0003712
HOVERGEN:HBG000135 KO:K15617 PANTHER:PTHR10378 EMBL:BC110113
IPI:IPI00489118 RefSeq:NP_571388.2 UniGene:Dr.156522
UniGene:Dr.157066 UniGene:Dr.598 ProteinModelPortal:Q2YDQ6
SMR:Q2YDQ6 STRING:Q2YDQ6 GeneID:30576 KEGG:dre:30576 CTD:30576
InParanoid:Q2YDQ6 NextBio:20806946 ArrayExpress:Q2YDQ6
Uniprot:Q2YDQ6
Length = 374
Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
Identities = 241/361 (66%), Positives = 277/361 (76%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNL WDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLRWDAFTTEFFEDDAMLTITFCLEDGPK 79
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRS+F+GG TELYY LKHPKESFHN ++LDCDQCTMVT +GKPM T+
Sbjct: 80 RYTIGRTLIPRYFRSVFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQNGKPMFTQ 139
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 140 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 199
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q P N
Sbjct: 200 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQAP-N 258
Query: 253 KRRKRXXXXXXXXXXXXXXXXXXXXXXXX---NFSLASQ--DVMVVGEPSLMGGEFGDED 307
KRRKR +F L+SQ DVMVVGEP+LMGGEFGDED
Sbjct: 259 KRRKRKMSGGSNMSAGGDSNNNSNNKKKSPANSFPLSSQVPDVMVVGEPTLMGGEFGDED 318
Query: 308 ERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQD-SDKKSPAVS 366
ERLITRLENTQ+DA AN +D + F++SP+ G +P P PSSQ+ S+ + S
Sbjct: 319 ERLITRLENTQFDA-ANGIDDEDSFNNSPALGAHSPWNNKP----PSSQEKSENPTSQAS 373
Query: 367 Q 367
Q
Sbjct: 374 Q 374
>UNIPROTKB|E1C373 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0001942 "hair follicle development" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0010669
"epithelial structure maintenance" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IEA] [GO:0035019 "somatic stem cell
maintenance" evidence=IEA] [GO:0044089 "positive regulation of
cellular component biogenesis" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR002691 GO:GO:0045944 GO:GO:0005667
GO:GO:0003712 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
GO:GO:0044089 EMBL:AADN02015128 EMBL:AADN02015129 EMBL:AADN02015130
EMBL:AADN02015131 EMBL:AADN02015132 EMBL:AADN02015133
EMBL:AADN02015134 EMBL:AADN02015135 IPI:IPI00822545
Ensembl:ENSGALT00000037307 ArrayExpress:E1C373 Uniprot:E1C373
Length = 337
Score = 1222 (435.2 bits), Expect = 2.4e-124, P = 2.4e-124
Identities = 233/341 (68%), Positives = 268/341 (78%)
Query: 33 LNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFD 92
+NKRLQ R+E+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+
Sbjct: 1 MNKRLQARSEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFE 60
Query: 93 GGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMR 152
GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMR
Sbjct: 61 GGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMR 120
Query: 153 IKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQ 210
IK+WHF +RQ+RELVPR+I+ M QDP +LEQL+KNITR G+TN TLNYLRLCVILEPMQ
Sbjct: 121 IKTWHFTIRQYRELVPRSILAMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQ 180
Query: 211 ELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXX 270
ELMSRHK Y LSPRDCLKT LFQKWQRMVAPP + +++P KRRKR
Sbjct: 181 ELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAG 239
Query: 271 XXXXXXXX----XXXNFSLASQDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCL 326
N SL+SQDVMVVGEP+LMGGEFGDEDERLITRLENTQYDA AN +
Sbjct: 240 NNANSTNSKKKSAAANLSLSSQDVMVVGEPTLMGGEFGDEDERLITRLENTQYDA-ANGM 298
Query: 327 DHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSPAVSQ 367
D + F++SP+ G +P P N + S+ +P SQ
Sbjct: 299 DDEEDFNNSPALGNNSPWNSKPPANQETK--SENPTPQASQ 337
>RGD|1307921 [details] [associations]
symbol:Ldb2 "LIM domain binding 2" species:10116 "Rattus
norvegicus" [GO:0000989 "transcription factor binding transcription
factor activity" evidence=ISO] [GO:0001942 "hair follicle
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=IEA;ISO]
[GO:0010669 "epithelial structure maintenance" evidence=IEA;ISO]
[GO:0019899 "enzyme binding" evidence=IEA;ISO] [GO:0030274 "LIM
domain binding" evidence=IEA] [GO:0035019 "somatic stem cell
maintenance" evidence=IEA;ISO] [GO:0044089 "positive regulation of
cellular component biogenesis" evidence=IEA;ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA;ISO] InterPro:IPR002691 RGD:1307921
GO:GO:0045944 GO:GO:0005667 GO:GO:0001942 GO:GO:0003712
GO:GO:0035019 GO:GO:0010669 PANTHER:PTHR10378
GeneTree:ENSGT00390000005639 GO:GO:0044089 IPI:IPI00780182
Ensembl:ENSRNOT00000058803 ArrayExpress:E9PTQ0 Uniprot:E9PTQ0
Length = 339
Score = 1197 (426.4 bits), Expect = 1.1e-121, P = 1.1e-121
Identities = 228/339 (67%), Positives = 268/339 (79%)
Query: 33 LNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFD 92
+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+
Sbjct: 1 MNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFE 60
Query: 93 GGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMR 152
GG+T+LYY LKH KES+HN+SIT+DCDQC MVT HGKPM TKVCTEGRLILEFTFDDLMR
Sbjct: 61 GGVTDLYYILKHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVCTEGRLILEFTFDDLMR 120
Query: 153 IKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQ 210
IK+WHF +RQ+RELVPR+I+ M QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQ
Sbjct: 121 IKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQ 180
Query: 211 ELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXX 270
ELMSRHK Y LSPRDCLKT LFQKWQRMVAPP + +++P KRRKR
Sbjct: 181 ELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAG 239
Query: 271 XXXXXXXX----XXXNFSLASQ--DVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGAN 324
+ SL++Q DVMVVGEP+LMGGEFGDEDERLITRLENTQYDA AN
Sbjct: 240 NTTNSAGSKKKTTAASLSLSTQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQYDA-AN 298
Query: 325 CLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
+D + F++SP+ G +P P P++Q++ ++P
Sbjct: 299 GMDDEEDFNNSPALGNNSPWNSKP----PATQETKSENP 333
>UNIPROTKB|F1NRA7 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
EMBL:AADN02015128 EMBL:AADN02015129 EMBL:AADN02015130
EMBL:AADN02015131 EMBL:AADN02015132 EMBL:AADN02015133
EMBL:AADN02015134 EMBL:AADN02015135 IPI:IPI01017131
Ensembl:ENSGALT00000037306 ArrayExpress:F1NRA7 Uniprot:F1NRA7
Length = 330
Score = 1074 (383.1 bits), Expect = 1.9e-110, Sum P(2) = 1.9e-110
Identities = 199/278 (71%), Positives = 225/278 (80%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRHTPY QP+YR+YE+NKRLQ R+E+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQARSEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVC
Sbjct: 79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC 138
Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +LEQL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLEQLSKNITRMGLTN 198
Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP +++P KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPP--EPTRQPTTKR 256
Query: 255 RKRXXXXXXXXXXXXXXXXXXXXX----XXXNFSLASQ 288
RKR N SL+SQ
Sbjct: 257 RKRKNSTSSTSNSSAGNNANSTNSKKKSAAANLSLSSQ 294
Score = 37 (18.1 bits), Expect = 1.9e-110, Sum P(2) = 1.9e-110
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 350 GNTPSSQDSDKKSPAVS 366
GN +S +S KKS A +
Sbjct: 272 GNNANSTNSKKKSAAAN 288
>UNIPROTKB|F1NI08 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
EMBL:AADN02046426 EMBL:AADN02046427 EMBL:AADN02046428
EMBL:AADN02046429 EMBL:AADN02048363 EMBL:AADN02048364
IPI:IPI01017181 Ensembl:ENSGALT00000039411 Uniprot:F1NI08
Length = 323
Score = 1058 (377.5 bits), Expect = 2.7e-109, Sum P(2) = 2.7e-109
Identities = 192/245 (78%), Positives = 215/245 (87%)
Query: 15 GVRRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPK 74
G+ RHTPY Q DYR++ELNKRLQ TEE DNLWWDAF TEFFEDDA LT+TFCLEDGPK
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPK 79
Query: 75 RYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTK 134
RYTIGRTLIPRYFRSIF+GG TELYY LKHPKESFHN ++LDCDQCTMVT HGKPM T+
Sbjct: 80 RYTIGRTLIPRYFRSIFEGGATELYYVLKHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQ 139
Query: 135 VCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGI 192
VC EGRL LEF FDD+MRIK+WHF++RQHREL+PR+I+ M QDP ML+QL+KNITR G+
Sbjct: 140 VCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGL 199
Query: 193 TNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPAN 252
+NSTLNYLRLCVILEPMQELMSRHK Y+LSPRDCLKT LFQKWQRMVAPP + Q+P+
Sbjct: 200 SNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQQPS- 258
Query: 253 KRRKR 257
KRRKR
Sbjct: 259 KRRKR 263
Score = 42 (19.8 bits), Expect = 2.7e-109, Sum P(2) = 2.7e-109
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 339 GGGAPDRGPPQGNTPSSQDSDKKSPA 364
GG G GNT +S +S KKSPA
Sbjct: 267 GGSTMSSGG--GNTNNS-NSKKKSPA 289
Score = 41 (19.5 bits), Expect = 3.4e-109, Sum P(2) = 3.4e-109
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 330 PHFSDSPSWGGGAPDRG 346
P SP W GG P G
Sbjct: 305 PFSLPSPGWRGGLPAPG 321
>UNIPROTKB|E9PFI4 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 HGNC:HGNC:6533 ChiTaRS:LDB2
EMBL:AC005690 EMBL:AC097515 EMBL:AC104656 EMBL:AC105353
EMBL:AC106894 IPI:IPI00922054 Ensembl:ENST00000502640
UCSC:uc010iee.3 ArrayExpress:E9PFI4 Bgee:E9PFI4 Uniprot:E9PFI4
Length = 313
Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
Identities = 199/278 (71%), Positives = 226/278 (81%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRHTPY QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
TIGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVC
Sbjct: 79 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVC 138
Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
TEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +L+QL+KNITR G+TN
Sbjct: 139 TEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTN 198
Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKR 254
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP + +++P KR
Sbjct: 199 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKR 257
Query: 255 RKRXXXXXXXXXXXXXXXXXXXXX----XXXNFSLASQ 288
RKR N SL+SQ
Sbjct: 258 RKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQ 295
>ZFIN|ZDB-GENE-990415-137 [details] [associations]
symbol:ldb2b "LIM-domain binding factor 2b"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030274 "LIM domain binding" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] InterPro:IPR002691
ZFIN:ZDB-GENE-990415-137 GO:GO:0005634 GO:GO:0003712 HSSP:P70662
eggNOG:NOG282114 HOGENOM:HOG000030908 HOVERGEN:HBG000135
OrthoDB:EOG4XWFXV PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
EMBL:BX908795 EMBL:AF031377 EMBL:BC090063 IPI:IPI00501946
RefSeq:NP_571390.1 UniGene:Dr.75824 SMR:O73714
Ensembl:ENSDART00000043556 GeneID:30578 KEGG:dre:30578 CTD:30578
InParanoid:O73714 NextBio:20806948 Uniprot:O73714
Length = 384
Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
Identities = 214/367 (58%), Positives = 251/367 (68%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRH PY QP+YR++ELNKRLQ R E+ D LWWDAF TEFFE+DATLTL+FCLE+GPK Y
Sbjct: 19 RRHAPYPVQPEYRMHELNKRLQSRPEDCDILWWDAFCTEFFEEDATLTLSFCLEEGPKTY 78
Query: 77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
TIGRTLIPRYF S+F+GG+ EL++ LK KESF+N++IT+D CTM T HGKP TKVC
Sbjct: 79 TIGRTLIPRYFSSLFEGGVYELFFELKQTKESFNNSTITVDSHHCTMTTQHGKPTFTKVC 138
Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTI--VGMQDPSMLEQLTKNITRQGITN 194
TEGRLIL FTFDDLMRIK+WHF + + EL+PR++ V QDP +EQL+KNI+R G+TN
Sbjct: 139 TEGRLILVFTFDDLMRIKTWHFTITHYSELIPRSVLAVNAQDPGAVEQLSKNISRVGLTN 198
Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPP-GKRESQR---- 249
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LF +WQRM PP G + +
Sbjct: 199 LTLNYLRLCVILEPMQELMSRHKTYGLSPRDCLKTCLFHQWQRMTTPPVGPSPNFKTEIF 258
Query: 250 PANKRR---------KRXXXXXXXXXXXXXXXXXXXXXXXXNFSLASQDVMVVGEPSLMG 300
P+N ++ +R NFSL SQDVMVVGEPSLMG
Sbjct: 259 PSNPKKSEQAKPPAKRRRRRNSAGSASNSSTGNSKKRSPANNFSLPSQDVMVVGEPSLMG 318
Query: 301 GEFGDEDERLITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDK 360
GE GD DERLITRLEN QYD N L HD D + + G G PS+QDS
Sbjct: 319 GELGDVDERLITRLENEQYDP-VNGL-HDDGLHDYTN-SPTLGNGGSWNGQHPSNQDSKP 375
Query: 361 KSPAVSQ 367
+ A Q
Sbjct: 376 DTMATQQ 382
>ZFIN|ZDB-GENE-990415-136 [details] [associations]
symbol:ldb2a "LIM-domain binding factor 2a"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030274 "LIM domain binding" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] InterPro:IPR002691
ZFIN:ZDB-GENE-990415-136 GO:GO:0005634 GO:GO:0003712
PANTHER:PTHR10378 GeneTree:ENSGT00390000005639 EMBL:CU855906
EMBL:CU896556 IPI:IPI01024258 Ensembl:ENSDART00000149571
ArrayExpress:F8W338 Bgee:F8W338 Uniprot:F8W338
Length = 439
Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
Identities = 185/228 (81%), Positives = 208/228 (91%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRH+PY QP+YR+YE+NKRLQ RTEESD+LWWDAFATEFFE+DATLTL+FCLEDGPKRY
Sbjct: 73 RRHSPYMVQPEYRIYEMNKRLQSRTEESDSLWWDAFATEFFEEDATLTLSFCLEDGPKRY 132
Query: 77 TIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVC 136
TIGRTLIPRYF ++F+GG+T+LYY LKH KESFHN+ IT+DCDQCTMVT HGKPM TKVC
Sbjct: 133 TIGRTLIPRYFSTVFEGGVTDLYYILKHSKESFHNSCITVDCDQCTMVTQHGKPMFTKVC 192
Query: 137 TEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITN 194
TEGRLILEF FDDLMRIK+WHF +RQ+REL+PR+I+ M QDP +LEQL+KNITR G+TN
Sbjct: 193 TEGRLILEFAFDDLMRIKTWHFNIRQYRELIPRSILAMHAQDPGVLEQLSKNITRMGLTN 252
Query: 195 STLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPP 242
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP
Sbjct: 253 FTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPP 300
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 121/207 (58%), Positives = 131/207 (63%)
Query: 175 QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQK 234
QDP +LEQL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQK
Sbjct: 233 QDPGVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQK 292
Query: 235 WQRMVAPPG---------------KRESQRPAN-KRRKRXXXXXXXXXXXXXXXXXXXXX 278
WQRMVAPP K+E R KRRKR
Sbjct: 293 WQRMVAPPAGHPQNFKTEIFPTNHKKEPTRQTTTKRRKRKNSASSASNSSLGNSAGGKKR 352
Query: 279 X-XXNFSLASQDVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGANCLDHDPHFSDSPS 337
NFSLASQDVMVVGEP+LMGGEFGDEDERLITRLENTQYDA N LD D F+ SP+
Sbjct: 353 SPANNFSLASQDVMVVGEPTLMGGEFGDEDERLITRLENTQYDA-TNGLDDDDDFTSSPA 411
Query: 338 WGGGAPDRGPPQGNTPSSQDSDKKSPA 364
+P P P+ QDS +S A
Sbjct: 412 LANNSPWNSKP----PTGQDSKPESTA 434
>UNIPROTKB|D4A0D2 [details] [associations]
symbol:Ldb2 "Protein Ldb2" species:10116 "Rattus
norvegicus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 RGD:1307921
GO:GO:0005634 GO:GO:0003712 PANTHER:PTHR10378 IPI:IPI00361834
Ensembl:ENSRNOT00000004335 ArrayExpress:D4A0D2 Uniprot:D4A0D2
Length = 297
Score = 998 (356.4 bits), Expect = 9.5e-103, Sum P(2) = 9.5e-103
Identities = 181/227 (79%), Positives = 205/227 (90%)
Query: 33 LNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFD 92
+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+
Sbjct: 1 MNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFE 60
Query: 93 GGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMR 152
GG+T+LYY LKH KES+HN+SIT+DCDQC MVT HGKPM TKVCTEGRLILEFTFDDLMR
Sbjct: 61 GGVTDLYYILKHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVCTEGRLILEFTFDDLMR 120
Query: 153 IKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQ 210
IK+WHF +RQ+RELVPR+I+ M QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQ
Sbjct: 121 IKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQ 180
Query: 211 ELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKRRKR 257
ELMSRHK Y LSPRDCLKT LFQKWQRMVAPP + +++P KRRKR
Sbjct: 181 ELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKR 226
Score = 40 (19.1 bits), Expect = 9.5e-103, Sum P(2) = 9.5e-103
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 350 GNTPSSQDSDKKSPAVS 366
GNT +S S KK+ A S
Sbjct: 239 GNTTNSAGSKKKTTAAS 255
>UNIPROTKB|H0YA09 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 HGNC:HGNC:6533 ChiTaRS:LDB2
EMBL:AC005690 EMBL:AC097515 EMBL:AC104656 EMBL:AC105353
EMBL:AC106894 Ensembl:ENST00000507464 Uniprot:H0YA09
Length = 294
Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
Identities = 190/294 (64%), Positives = 224/294 (76%)
Query: 78 IGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCT 137
IGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVCT
Sbjct: 2 IGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCT 61
Query: 138 EGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITNS 195
EGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +L+QL+KNITR G+TN
Sbjct: 62 EGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNF 121
Query: 196 TLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKRR 255
TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVAPP +++P KRR
Sbjct: 122 TLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPP--EPTRQPTTKRR 179
Query: 256 KRXXXXXXXXXXXXXXXXXXXXX----XXXNFSLASQ--DVMVVGEPSLMGGEFGDEDER 309
KR N SL+SQ DVMVVGEP+LMGGEFGDEDER
Sbjct: 180 KRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDER 239
Query: 310 LITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
LITRLENTQYDA AN +D + F++SP+ G +P P P++Q++ ++P
Sbjct: 240 LITRLENTQYDA-ANGMDDEEDFNNSPALGNNSPWNSKP----PATQETKSENP 288
>UNIPROTKB|I3LLH6 [details] [associations]
symbol:LDB2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0044089 "positive
regulation of cellular component biogenesis" evidence=IEA]
[GO:0035019 "somatic stem cell maintenance" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0010669 "epithelial
structure maintenance" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0001942 "hair follicle
development" evidence=IEA] [GO:0030274 "LIM domain binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] InterPro:IPR002691 GO:GO:0045944 GO:GO:0005667
GO:GO:0001942 GO:GO:0003712 GO:GO:0035019 GO:GO:0010669
PANTHER:PTHR10378 GeneTree:ENSGT00390000005639 OMA:LGNSSPW
GO:GO:0044089 EMBL:CU464164 EMBL:CU861948 EMBL:CU928550
Ensembl:ENSSSCT00000025105 Uniprot:I3LLH6
Length = 294
Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
Identities = 166/294 (56%), Positives = 208/294 (70%)
Query: 78 IGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCT 137
IGRTLIPRYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQC MVT HGKPM TKVCT
Sbjct: 1 IGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVCT 60
Query: 138 EGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLTKNITRQGITNS 195
EGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +L+QL+KNITR G+TN
Sbjct: 61 EGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNF 120
Query: 196 TLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKRR 255
TLNYLR+CV L+ Q +M+R + +S D + + LF KW R V P + +++P KRR
Sbjct: 121 TLNYLRICVYLKKRQLMMTRSNTFRISESDVMDSCLFMKWIRFVTPSAE-PTRQPTTKRR 179
Query: 256 KRXXXXXXXXXXXXXXXXXXXXXX----XXNFSLASQ--DVMVVGEPSLMGGEFGDEDER 309
KR N SL+SQ DVMVVGEP+LMGGEFGDEDER
Sbjct: 180 KRKNSTSSTSNSSAGNNANSTGSKKKTPAANLSLSSQVPDVMVVGEPTLMGGEFGDEDER 239
Query: 310 LITRLENTQYDAGANCLDHDPHFSDSPSWGGGAPDRGPPQGNTPSSQDSDKKSP 363
LITRLENTQYDA AN +D + F+ SP+ G +P P P++Q++ ++P
Sbjct: 240 LITRLENTQYDA-ANGMDDEEDFTHSPALGNSSPWSSKP----PATQETKSENP 288
>UNIPROTKB|D6RAT1 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0001942 "hair follicle development" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0010669
"epithelial structure maintenance" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IEA] [GO:0035019 "somatic stem cell
maintenance" evidence=IEA] [GO:0044089 "positive regulation of
cellular component biogenesis" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR002691 GO:GO:0045944 GO:GO:0005667
GO:GO:0001942 GO:GO:0003712 GO:GO:0035019 GO:GO:0010669
HOGENOM:HOG000030908 PANTHER:PTHR10378 HGNC:HGNC:6533 ChiTaRS:LDB2
GO:GO:0044089 EMBL:AC005690 EMBL:AC097515 EMBL:AC104656
EMBL:AC105353 EMBL:AC106894 IPI:IPI00965897 Ensembl:ENST00000506732
ArrayExpress:D6RAT1 Bgee:D6RAT1 Uniprot:D6RAT1
Length = 164
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 130/162 (80%), Positives = 151/162 (93%)
Query: 25 QPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIP 84
QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIP
Sbjct: 3 QPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIP 62
Query: 85 RYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILE 144
RYF ++F+GG+T+LYY LKH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILE
Sbjct: 63 RYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILE 122
Query: 145 FTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSMLEQLT 184
FTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +L+QL+
Sbjct: 123 FTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLS 164
>UNIPROTKB|B7Z2D3 [details] [associations]
symbol:LDB2 "cDNA FLJ52487, highly similar to LIM
domain-binding protein 2" species:9606 "Homo sapiens" [GO:0003712
"transcription cofactor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030274 "LIM domain binding"
evidence=IEA] InterPro:IPR002691 GO:GO:0005634 GO:GO:0003712
HOGENOM:HOG000030908 HOVERGEN:HBG000135 PANTHER:PTHR10378
UniGene:Hs.714330 HGNC:HGNC:6533 ChiTaRS:LDB2 EMBL:AC005690
EMBL:AC097515 EMBL:AC104656 EMBL:AC105353 EMBL:AC106894
EMBL:AK294588 IPI:IPI00922054 STRING:B7Z2D3 Ensembl:ENST00000503178
UCSC:uc011bxi.2 Uniprot:B7Z2D3
Length = 189
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 112/172 (65%), Positives = 126/172 (73%)
Query: 123 MVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--QDPSML 180
MVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ+RELVPR+I+ M QDP +L
Sbjct: 1 MVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVL 60
Query: 181 EQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVA 240
+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y LSPRDCLKT LFQKWQRMVA
Sbjct: 61 DQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVA 120
Query: 241 PPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXX----XXXNFSLASQ 288
PP + +++P KRRKR N SL+SQ
Sbjct: 121 PPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQ 171
>UNIPROTKB|Q8I4H8 [details] [associations]
symbol:ldb-1 "Protein LDB-1, isoform b" species:6239
"Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040010 GO:GO:0040011
GO:GO:0003700 GO:GO:0007416 GO:GO:0040035 GO:GO:0003712
GO:GO:0040025 GO:GO:0034504 GO:GO:0007638 EMBL:Z81017 HSSP:P70662
KO:K15617 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
UniGene:Cel.17941 GeneID:181292 KEGG:cel:CELE_F58A3.1 CTD:181292
NextBio:913316 PIR:T22888 RefSeq:NP_509845.1
ProteinModelPortal:Q8I4H8 SMR:Q8I4H8 STRING:Q8I4H8 PRIDE:Q8I4H8
EnsemblMetazoa:F58A3.1b UCSC:F58A3.1c WormBase:F58A3.1b
HOGENOM:HOG000021159 ArrayExpress:Q8I4H8 Uniprot:Q8I4H8
Length = 578
Score = 319 (117.4 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 89/242 (36%), Positives = 130/242 (53%)
Query: 27 DYRVYELNKRLQ--QRTEESDN---LWWDAFATEFFEDDATLTLTFCLED----GPKRYT 77
++R++++N+RL T S+N WWDAF+ EFF+DD L E +RY
Sbjct: 49 EFRIHDMNRRLYIFSSTGVSENDQQQWWDAFSHEFFDDDCKLWFVIGSEPVAFASRERYI 108
Query: 78 IGRTLIPRYFRSIFDGGITELYYNLKHPKE--SFHNTSITLDCDQCTMVTHHGKPMLTKV 135
I R IP++FRSIFD G+ EL Y L+ P + N S + + +T + + +V
Sbjct: 109 INRQFIPKFFRSIFDSGMRELQYVLRGPSRECTLANGSQAYENENVLQITRYDQSSQFEV 168
Query: 136 CTEGRLILEFT-FDDLM--RIKSWHFAVRQHRELV--PRTI---VGMQDPSMLEQLTKNI 187
TEG+L +EF FD++M RIK+W +++ E V T V Q+P EQ +N
Sbjct: 169 NTEGKLYVEFAPFDEVMNYRIKAWTLELKRSNEFVYNQNTADYRVEAQNP---EQ--ENK 223
Query: 188 TRQGITNSTLNYLRLCVILEPMQELMSRHK-AYALSPRDCLKTTLFQKWQRMVAPPGKRE 246
R G ST N + + IL+PMQ +MS K A A++PR+ +K TLFQ Q V R+
Sbjct: 224 PRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITPREVMKRTLFQHHQ--VRQQNMRQ 281
Query: 247 SQ 248
Q
Sbjct: 282 QQ 283
Score = 137 (53.3 bits), Expect = 7.7e-16, Sum P(2) = 7.7e-16
Identities = 46/132 (34%), Positives = 69/132 (52%)
Query: 147 FDDLM--RIKSWHFAVRQHRELV--PRTI---VGMQDPSMLEQLTKNITRQGITNSTLNY 199
FD++M RIK+W +++ E V T V Q+P EQ +N R G ST N
Sbjct: 181 FDEVMNYRIKAWTLELKRSNEFVYNQNTADYRVEAQNP---EQ--ENKPRMGFFKSTFNL 235
Query: 200 LRLCVILEPMQELMSRHK-AYALSPRDCLKTTLFQKWQ-------------RMVAPPGKR 245
+ + IL+PMQ +MS K A A++PR+ +K TLFQ Q +M+ P +
Sbjct: 236 MTMLKILDPMQSIMSSAKSAPAITPREVMKRTLFQHHQVRQQNMRQQQLNQQMMIPAPEP 295
Query: 246 ESQRPANKRRKR 257
E +PA KR+++
Sbjct: 296 EKPKPARKRQRK 307
Score = 136 (52.9 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 289 DVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGA 323
DVMVVGEPS+MG EFG+ DER I+R+EN+QYD A
Sbjct: 364 DVMVVGEPSMMGSEFGENDERTISRVENSQYDPNA 398
>UNIPROTKB|G5EEL0 [details] [associations]
symbol:ldb-1 "Protein LDB-1, isoform a" species:6239
"Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040010 GO:GO:0040011
GO:GO:0003700 GO:GO:0007416 GO:GO:0040035 GO:GO:0003712
GO:GO:0040025 GO:GO:0034504 GO:GO:0007638 EMBL:Z81017 HSSP:P70662
KO:K15617 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
EMBL:U80220 PIR:T22885 RefSeq:NP_509846.1 UniGene:Cel.17941
ProteinModelPortal:G5EEL0 SMR:G5EEL0 EnsemblMetazoa:F58A3.1a.1
EnsemblMetazoa:F58A3.1a.2 GeneID:181292 KEGG:cel:CELE_F58A3.1
CTD:181292 WormBase:F58A3.1a NextBio:913316 Uniprot:G5EEL0
Length = 592
Score = 319 (117.4 bits), Expect = 5.5e-40, Sum P(2) = 5.5e-40
Identities = 89/242 (36%), Positives = 130/242 (53%)
Query: 27 DYRVYELNKRLQ--QRTEESDN---LWWDAFATEFFEDDATLTLTFCLED----GPKRYT 77
++R++++N+RL T S+N WWDAF+ EFF+DD L E +RY
Sbjct: 63 EFRIHDMNRRLYIFSSTGVSENDQQQWWDAFSHEFFDDDCKLWFVIGSEPVAFASRERYI 122
Query: 78 IGRTLIPRYFRSIFDGGITELYYNLKHPKE--SFHNTSITLDCDQCTMVTHHGKPMLTKV 135
I R IP++FRSIFD G+ EL Y L+ P + N S + + +T + + +V
Sbjct: 123 INRQFIPKFFRSIFDSGMRELQYVLRGPSRECTLANGSQAYENENVLQITRYDQSSQFEV 182
Query: 136 CTEGRLILEFT-FDDLM--RIKSWHFAVRQHRELV--PRTI---VGMQDPSMLEQLTKNI 187
TEG+L +EF FD++M RIK+W +++ E V T V Q+P EQ +N
Sbjct: 183 NTEGKLYVEFAPFDEVMNYRIKAWTLELKRSNEFVYNQNTADYRVEAQNP---EQ--ENK 237
Query: 188 TRQGITNSTLNYLRLCVILEPMQELMSRHK-AYALSPRDCLKTTLFQKWQRMVAPPGKRE 246
R G ST N + + IL+PMQ +MS K A A++PR+ +K TLFQ Q V R+
Sbjct: 238 PRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITPREVMKRTLFQHHQ--VRQQNMRQ 295
Query: 247 SQ 248
Q
Sbjct: 296 QQ 297
Score = 137 (53.3 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 46/132 (34%), Positives = 69/132 (52%)
Query: 147 FDDLM--RIKSWHFAVRQHRELV--PRTI---VGMQDPSMLEQLTKNITRQGITNSTLNY 199
FD++M RIK+W +++ E V T V Q+P EQ +N R G ST N
Sbjct: 195 FDEVMNYRIKAWTLELKRSNEFVYNQNTADYRVEAQNP---EQ--ENKPRMGFFKSTFNL 249
Query: 200 LRLCVILEPMQELMSRHK-AYALSPRDCLKTTLFQKWQ-------------RMVAPPGKR 245
+ + IL+PMQ +MS K A A++PR+ +K TLFQ Q +M+ P +
Sbjct: 250 MTMLKILDPMQSIMSSAKSAPAITPREVMKRTLFQHHQVRQQNMRQQQLNQQMMIPAPEP 309
Query: 246 ESQRPANKRRKR 257
E +PA KR+++
Sbjct: 310 EKPKPARKRQRK 321
Score = 136 (52.9 bits), Expect = 5.5e-40, Sum P(2) = 5.5e-40
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 289 DVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGA 323
DVMVVGEPS+MG EFG+ DER I+R+EN+QYD A
Sbjct: 378 DVMVVGEPSMMGSEFGENDERTISRVENSQYDPNA 412
>WB|WBGene00002261 [details] [associations]
symbol:ldb-1 species:6239 "Caenorhabditis elegans"
[GO:0030274 "LIM domain binding" evidence=IEA;IPI] [GO:0003712
"transcription cofactor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0040011 "locomotion" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0007638
"mechanosensory behavior" evidence=IMP] [GO:0040025 "vulval
development" evidence=IMP] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IDA] [GO:0007416
"synapse assembly" evidence=IMP] [GO:0034504 "protein localization
to nucleus" evidence=IMP] InterPro:IPR002691 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040010 GO:GO:0040011
GO:GO:0003700 GO:GO:0007416 GO:GO:0040035 GO:GO:0003712
GO:GO:0040025 GO:GO:0034504 GO:GO:0007638 EMBL:Z81017 HSSP:P70662
KO:K15617 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
UniGene:Cel.17941 GeneID:181292 KEGG:cel:CELE_F58A3.1 CTD:181292
NextBio:913316 UCSC:F58A3.1c HOGENOM:HOG000021159 PIR:T22890
RefSeq:NP_509844.3 ProteinModelPortal:Q9U3E2 SMR:Q9U3E2
IntAct:Q9U3E2 STRING:Q9U3E2 EnsemblMetazoa:F58A3.1c
WormBase:F58A3.1c InParanoid:Q9U3E2 OMA:NSAMITG ArrayExpress:Q9U3E2
Uniprot:Q9U3E2
Length = 629
Score = 319 (117.4 bits), Expect = 8.4e-40, Sum P(2) = 8.4e-40
Identities = 89/242 (36%), Positives = 130/242 (53%)
Query: 27 DYRVYELNKRLQ--QRTEESDN---LWWDAFATEFFEDDATLTLTFCLED----GPKRYT 77
++R++++N+RL T S+N WWDAF+ EFF+DD L E +RY
Sbjct: 100 EFRIHDMNRRLYIFSSTGVSENDQQQWWDAFSHEFFDDDCKLWFVIGSEPVAFASRERYI 159
Query: 78 IGRTLIPRYFRSIFDGGITELYYNLKHPKE--SFHNTSITLDCDQCTMVTHHGKPMLTKV 135
I R IP++FRSIFD G+ EL Y L+ P + N S + + +T + + +V
Sbjct: 160 INRQFIPKFFRSIFDSGMRELQYVLRGPSRECTLANGSQAYENENVLQITRYDQSSQFEV 219
Query: 136 CTEGRLILEFT-FDDLM--RIKSWHFAVRQHRELV--PRTI---VGMQDPSMLEQLTKNI 187
TEG+L +EF FD++M RIK+W +++ E V T V Q+P EQ +N
Sbjct: 220 NTEGKLYVEFAPFDEVMNYRIKAWTLELKRSNEFVYNQNTADYRVEAQNP---EQ--ENK 274
Query: 188 TRQGITNSTLNYLRLCVILEPMQELMSRHK-AYALSPRDCLKTTLFQKWQRMVAPPGKRE 246
R G ST N + + IL+PMQ +MS K A A++PR+ +K TLFQ Q V R+
Sbjct: 275 PRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITPREVMKRTLFQHHQ--VRQQNMRQ 332
Query: 247 SQ 248
Q
Sbjct: 333 QQ 334
Score = 137 (53.3 bits), Expect = 9.8e-16, Sum P(2) = 9.8e-16
Identities = 46/132 (34%), Positives = 69/132 (52%)
Query: 147 FDDLM--RIKSWHFAVRQHRELV--PRTI---VGMQDPSMLEQLTKNITRQGITNSTLNY 199
FD++M RIK+W +++ E V T V Q+P EQ +N R G ST N
Sbjct: 232 FDEVMNYRIKAWTLELKRSNEFVYNQNTADYRVEAQNP---EQ--ENKPRMGFFKSTFNL 286
Query: 200 LRLCVILEPMQELMSRHK-AYALSPRDCLKTTLFQKWQ-------------RMVAPPGKR 245
+ + IL+PMQ +MS K A A++PR+ +K TLFQ Q +M+ P +
Sbjct: 287 MTMLKILDPMQSIMSSAKSAPAITPREVMKRTLFQHHQVRQQNMRQQQLNQQMMIPAPEP 346
Query: 246 ESQRPANKRRKR 257
E +PA KR+++
Sbjct: 347 EKPKPARKRQRK 358
Score = 136 (52.9 bits), Expect = 8.4e-40, Sum P(2) = 8.4e-40
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 289 DVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGA 323
DVMVVGEPS+MG EFG+ DER I+R+EN+QYD A
Sbjct: 415 DVMVVGEPSMMGSEFGENDERTISRVENSQYDPNA 449
>UNIPROTKB|Q9U3E2 [details] [associations]
symbol:ldb-1 "Protein LDB-1, isoform c" species:6239
"Caenorhabditis elegans" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040010 GO:GO:0040011
GO:GO:0003700 GO:GO:0007416 GO:GO:0040035 GO:GO:0003712
GO:GO:0040025 GO:GO:0034504 GO:GO:0007638 EMBL:Z81017 HSSP:P70662
KO:K15617 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
UniGene:Cel.17941 GeneID:181292 KEGG:cel:CELE_F58A3.1 CTD:181292
NextBio:913316 UCSC:F58A3.1c HOGENOM:HOG000021159 PIR:T22890
RefSeq:NP_509844.3 ProteinModelPortal:Q9U3E2 SMR:Q9U3E2
IntAct:Q9U3E2 STRING:Q9U3E2 EnsemblMetazoa:F58A3.1c
WormBase:F58A3.1c InParanoid:Q9U3E2 OMA:NSAMITG ArrayExpress:Q9U3E2
Uniprot:Q9U3E2
Length = 629
Score = 319 (117.4 bits), Expect = 8.4e-40, Sum P(2) = 8.4e-40
Identities = 89/242 (36%), Positives = 130/242 (53%)
Query: 27 DYRVYELNKRLQ--QRTEESDN---LWWDAFATEFFEDDATLTLTFCLED----GPKRYT 77
++R++++N+RL T S+N WWDAF+ EFF+DD L E +RY
Sbjct: 100 EFRIHDMNRRLYIFSSTGVSENDQQQWWDAFSHEFFDDDCKLWFVIGSEPVAFASRERYI 159
Query: 78 IGRTLIPRYFRSIFDGGITELYYNLKHPKE--SFHNTSITLDCDQCTMVTHHGKPMLTKV 135
I R IP++FRSIFD G+ EL Y L+ P + N S + + +T + + +V
Sbjct: 160 INRQFIPKFFRSIFDSGMRELQYVLRGPSRECTLANGSQAYENENVLQITRYDQSSQFEV 219
Query: 136 CTEGRLILEFT-FDDLM--RIKSWHFAVRQHRELV--PRTI---VGMQDPSMLEQLTKNI 187
TEG+L +EF FD++M RIK+W +++ E V T V Q+P EQ +N
Sbjct: 220 NTEGKLYVEFAPFDEVMNYRIKAWTLELKRSNEFVYNQNTADYRVEAQNP---EQ--ENK 274
Query: 188 TRQGITNSTLNYLRLCVILEPMQELMSRHK-AYALSPRDCLKTTLFQKWQRMVAPPGKRE 246
R G ST N + + IL+PMQ +MS K A A++PR+ +K TLFQ Q V R+
Sbjct: 275 PRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITPREVMKRTLFQHHQ--VRQQNMRQ 332
Query: 247 SQ 248
Q
Sbjct: 333 QQ 334
Score = 137 (53.3 bits), Expect = 9.8e-16, Sum P(2) = 9.8e-16
Identities = 46/132 (34%), Positives = 69/132 (52%)
Query: 147 FDDLM--RIKSWHFAVRQHRELV--PRTI---VGMQDPSMLEQLTKNITRQGITNSTLNY 199
FD++M RIK+W +++ E V T V Q+P EQ +N R G ST N
Sbjct: 232 FDEVMNYRIKAWTLELKRSNEFVYNQNTADYRVEAQNP---EQ--ENKPRMGFFKSTFNL 286
Query: 200 LRLCVILEPMQELMSRHK-AYALSPRDCLKTTLFQKWQ-------------RMVAPPGKR 245
+ + IL+PMQ +MS K A A++PR+ +K TLFQ Q +M+ P +
Sbjct: 287 MTMLKILDPMQSIMSSAKSAPAITPREVMKRTLFQHHQVRQQNMRQQQLNQQMMIPAPEP 346
Query: 246 ESQRPANKRRKR 257
E +PA KR+++
Sbjct: 347 EKPKPARKRQRK 358
Score = 136 (52.9 bits), Expect = 8.4e-40, Sum P(2) = 8.4e-40
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 289 DVMVVGEPSLMGGEFGDEDERLITRLENTQYDAGA 323
DVMVVGEPS+MG EFG+ DER I+R+EN+QYD A
Sbjct: 415 DVMVVGEPSMMGSEFGENDERTISRVENSQYDPNA 449
>UNIPROTKB|E7EX95 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 HGNC:HGNC:6533 ChiTaRS:LDB2
EMBL:AC005690 EMBL:AC097515 EMBL:AC104656 EMBL:AC105353
EMBL:AC106894 IPI:IPI00967706 Ensembl:ENST00000508918
ArrayExpress:E7EX95 Bgee:E7EX95 Uniprot:E7EX95
Length = 110
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 52/62 (83%), Positives = 58/62 (93%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRHTPY QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 77 TI 78
+
Sbjct: 79 IV 80
>UNIPROTKB|E9PGU0 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 HGNC:HGNC:6533 ChiTaRS:LDB2
EMBL:AC005690 EMBL:AC097515 EMBL:AC104656 EMBL:AC105353
EMBL:AC106894 IPI:IPI00965057 Ensembl:ENST00000512345
ArrayExpress:E9PGU0 Bgee:E9PGU0 Uniprot:E9PGU0
Length = 106
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 52/60 (86%), Positives = 57/60 (95%)
Query: 17 RRHTPYFGQPDYRVYELNKRLQQRTEESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRY 76
RRHTPY QP+YR+YE+NKRLQ RTE+SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
>ASPGD|ASPL0000007122 [details] [associations]
symbol:AN6264 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] EMBL:BN001301 EnsemblFungi:CADANIAT00006726
Uniprot:C8V1H8
Length = 365
Score = 115 (45.5 bits), Expect = 0.00056, P = 0.00056
Identities = 36/151 (23%), Positives = 67/151 (44%)
Query: 40 RTEESDNLWWDAFATEFFEDDATLTL-TFCLEDGPKRYTIGRTLIPRYFRSIFDGGITEL 98
R E +D +W +F F+ L F + G K++ I + RY+ + F GI ++
Sbjct: 47 RGEAADLAYWSSFVDRFYSPTGVLRQGVFNNQAGAKQFEIATPALARYYLTQFASGIRQI 106
Query: 99 YYNLKHPKES-FHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWH 157
++ P+E N ++C + + ++ T G L +F F + +I+
Sbjct: 107 QMLIEGPREKDLPNGGHLVECPKAFFIYWFTND--AQLFTTGTLKAQFDFQN--KIEVLD 162
Query: 158 FAVRQHRELVPRT-IVGMQ-DPSMLEQLTKN 186
V H E +PR+ + ++ D +LTKN
Sbjct: 163 IVVMSHTEYLPRSQLQALELDQKQSPKLTKN 193
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.429 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 367 343 0.00096 116 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 42
No. of states in DFA: 621 (66 KB)
Total size of DFA: 268 KB (2141 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.28u 0.11s 28.39t Elapsed: 00:00:02
Total cpu time: 28.29u 0.11s 28.40t Elapsed: 00:00:02
Start: Thu Aug 15 17:20:56 2013 End: Thu Aug 15 17:20:58 2013