Query psy2756
Match_columns 112
No_of_seqs 103 out of 330
Neff 4.3
Searched_HMMs 29240
Date Sat Aug 17 00:24:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a18_F RPL14; ribosome, eukary 100.0 7.2E-52 2.5E-56 301.9 11.0 101 10-112 1-102 (126)
2 3izc_N 60S ribosomal protein R 100.0 1.3E-49 4.6E-54 293.5 8.4 104 9-112 8-111 (138)
3 3iz5_N 60S ribosomal protein L 100.0 2.9E-48 9.8E-53 285.2 7.5 101 10-112 1-101 (134)
4 3j21_5 50S ribosomal protein L 100.0 5.3E-32 1.8E-36 184.4 5.7 78 15-92 3-81 (83)
5 2joy_A 50S ribosomal protein L 100.0 1.9E-31 6.4E-36 185.1 8.6 84 15-98 3-88 (96)
6 4a18_N RPL27, ribosomal protei 99.8 2.6E-20 9E-25 138.2 5.1 62 13-74 2-92 (144)
7 3iz5_G 60S ribosomal protein L 99.5 1.6E-14 5.6E-19 113.0 3.6 61 14-74 73-135 (219)
8 4a18_E RPL6; ribosome, eukaryo 99.3 8.2E-12 2.8E-16 96.1 6.5 63 12-74 41-105 (191)
9 3izc_a 60S ribosomal protein R 99.2 3.5E-14 1.2E-18 104.5 -7.0 61 14-74 3-90 (136)
10 3iz5_a 60S ribosomal protein L 99.2 3.5E-14 1.2E-18 104.5 -7.8 61 14-74 3-90 (136)
11 3izc_G 60S ribosomal protein R 98.7 6.6E-09 2.2E-13 79.1 3.9 62 13-74 31-94 (176)
12 2e70_A Transcription elongatio 94.5 0.086 3E-06 34.6 5.5 40 12-51 14-54 (71)
13 3r8s_U 50S ribosomal protein L 94.4 0.11 3.6E-06 36.0 5.9 36 16-51 4-39 (102)
14 2zjr_R 50S ribosomal protein L 94.1 0.048 1.7E-06 38.4 3.7 56 15-70 15-87 (115)
15 1vq8_T 50S ribosomal protein L 93.9 0.064 2.2E-06 38.2 4.2 56 16-71 43-104 (120)
16 2zkr_t 60S ribosomal protein L 93.4 0.079 2.7E-06 38.9 4.0 56 16-71 49-111 (145)
17 2ftc_N Mitochondrial ribosomal 93.1 0.15 5.1E-06 34.9 4.8 31 21-51 3-34 (96)
18 3j21_U 50S ribosomal protein L 92.9 0.11 3.7E-06 37.1 4.0 56 16-71 46-107 (121)
19 1nz9_A Transcription antitermi 92.5 0.14 4.7E-06 31.0 3.6 32 16-47 5-37 (58)
20 3v2d_Y 50S ribosomal protein L 91.3 0.24 8.3E-06 34.6 4.2 55 15-69 6-77 (110)
21 3u5e_Y L33, YL33, 60S ribosoma 91.3 0.27 9.2E-06 35.4 4.5 57 16-72 50-112 (127)
22 3p8b_B Transcription antitermi 90.5 0.65 2.2E-05 32.7 5.9 53 15-67 91-145 (152)
23 3iz5_Y 60S ribosomal protein L 89.1 0.49 1.7E-05 34.9 4.5 57 16-72 49-111 (150)
24 4a17_S RPL26, 60S ribosomal pr 88.0 0.54 1.9E-05 34.1 4.0 56 16-71 49-110 (135)
25 2jvv_A Transcription antitermi 87.4 0.66 2.3E-05 33.4 4.2 36 15-50 127-165 (181)
26 2e6z_A Transcription elongatio 85.4 0.67 2.3E-05 28.5 2.9 31 16-47 8-38 (59)
27 3bbo_W Ribosomal protein L24; 84.1 0.11 3.8E-06 39.7 -1.4 36 16-51 69-105 (191)
28 2xzm_W 40S ribosomal protein S 81.4 1.9 6.5E-05 34.2 4.7 41 9-50 171-215 (260)
29 2ckk_A KIN17; beta barrel, rib 77.6 5.8 0.0002 27.8 5.8 36 17-53 72-112 (127)
30 3kbg_A 30S ribosomal protein S 73.8 2.3 7.8E-05 32.8 3.0 25 17-41 140-164 (213)
31 3j20_E 30S ribosomal protein S 71.0 2.8 9.7E-05 32.9 3.0 34 17-50 180-218 (243)
32 2xhc_A Transcription antitermi 69.5 5.1 0.00017 32.5 4.3 33 15-47 298-331 (352)
33 3iz6_D 40S ribosomal protein S 68.5 3.9 0.00013 32.5 3.3 34 17-50 176-213 (265)
34 4a1x_C CP5-46-A peptide; hydro 60.9 4 0.00014 21.8 1.4 15 17-31 2-16 (26)
35 3u5c_E RP5, S7, YS6, 40S ribos 52.7 3.9 0.00013 32.5 0.7 34 17-50 176-213 (261)
36 2wfw_A ARC; ATP-binding protei 51.8 16 0.00055 26.9 3.9 25 27-51 64-89 (153)
37 1m1h_A Transcription antitermi 49.8 3.4 0.00012 32.0 0.0 33 15-47 194-227 (248)
38 2do3_A Transcription elongatio 47.7 27 0.00093 22.4 4.1 38 12-50 14-51 (69)
39 2k3a_A CHAP domain protein; mo 43.4 24 0.00082 25.6 3.7 31 17-48 95-125 (155)
40 3m9b_A Proteasome-associated A 41.7 20 0.00069 28.2 3.3 36 16-51 135-180 (251)
41 2z1c_A Hydrogenase expression/ 40.1 20 0.00068 23.1 2.5 34 34-71 7-43 (75)
42 4fzv_A Putative methyltransfer 39.5 11 0.00039 30.2 1.5 11 43-53 225-235 (359)
43 2ckk_A KIN17; beta barrel, rib 38.9 36 0.0012 23.6 3.9 39 14-53 13-56 (127)
44 3b1j_A Glyceraldehyde 3-phosph 35.3 35 0.0012 27.1 3.8 32 58-89 236-267 (339)
45 2g82_O GAPDH, glyceraldehyde-3 35.1 36 0.0012 27.1 3.8 34 57-90 229-262 (331)
46 1u8f_O GAPDH, glyceraldehyde-3 34.6 37 0.0013 26.7 3.8 33 57-89 233-265 (335)
47 1hdg_O Holo-D-glyceraldehyde-3 34.0 41 0.0014 26.7 4.0 33 57-89 231-263 (332)
48 1gad_O D-glyceraldehyde-3-phos 33.9 37 0.0013 26.8 3.7 33 57-89 230-262 (330)
49 3h43_A Proteasome-activating n 33.9 35 0.0012 22.1 3.0 16 33-48 21-36 (85)
50 3cmc_O GAPDH, glyceraldehyde-3 33.6 42 0.0014 26.6 4.0 33 57-89 231-263 (334)
51 3e5r_O PP38, glyceraldehyde-3- 33.4 40 0.0014 26.7 3.8 33 57-89 235-267 (337)
52 3cps_A Glyceraldehyde 3-phosph 32.2 42 0.0014 27.0 3.8 33 57-89 251-283 (354)
53 1rm4_O Glyceraldehyde 3-phosph 31.2 45 0.0015 26.6 3.8 33 57-89 233-265 (337)
54 1b7g_O Protein (glyceraldehyde 31.2 48 0.0017 26.0 3.9 32 58-89 212-243 (340)
55 2d2i_A Glyceraldehyde 3-phosph 31.0 45 0.0015 27.2 3.8 33 57-89 235-267 (380)
56 2x5j_O E4PDH, D-erythrose-4-ph 29.7 44 0.0015 26.5 3.5 33 58-90 236-268 (339)
57 1v2y_A 3300001G02RIK protein; 27.9 56 0.0019 21.8 3.3 33 57-89 8-40 (105)
58 1ix5_A FKBP; ppiase, isomerase 25.3 68 0.0023 22.2 3.5 30 16-51 104-133 (151)
59 1obf_O Glyceraldehyde 3-phosph 25.1 67 0.0023 25.8 3.8 33 58-90 235-267 (335)
60 3zr5_A Galactocerebrosidase; h 24.1 26 0.00089 30.5 1.3 33 11-43 318-362 (656)
61 2jrn_A CHAP domain protein; mo 23.3 80 0.0027 23.3 3.6 31 17-48 95-125 (163)
62 3gtz_A Putative translation in 23.3 53 0.0018 22.1 2.5 25 1-25 3-27 (124)
63 3pym_A GAPDH 3, glyceraldehyde 22.5 80 0.0027 25.4 3.8 33 58-90 232-264 (332)
64 2b4r_O Glyceraldehyde-3-phosph 22.5 72 0.0024 25.8 3.5 33 58-90 245-277 (345)
65 2ep7_A GAPDH, glyceraldehyde-3 22.4 79 0.0027 25.4 3.8 33 58-90 233-266 (342)
66 1cf2_P Protein (glyceraldehyde 22.1 97 0.0033 24.2 4.1 33 57-89 211-243 (337)
67 2kr7_A FKBP-type peptidyl-prol 22.1 75 0.0026 22.0 3.2 34 15-51 93-128 (151)
68 1m1f_A KID toxin protein; toxi 22.0 54 0.0019 21.0 2.3 23 17-39 2-30 (110)
69 3pr9_A FKBP-type peptidyl-prol 21.9 1.1E+02 0.0037 21.6 4.0 31 15-51 102-132 (157)
70 3doc_A Glyceraldehyde 3-phosph 21.6 86 0.0029 25.3 3.8 32 58-89 234-265 (335)
71 3h9e_O Glyceraldehyde-3-phosph 21.5 86 0.0029 25.4 3.8 33 58-90 238-270 (346)
72 3cp0_A Membrane protein implic 20.9 62 0.0021 20.0 2.3 25 26-50 21-47 (82)
73 4dib_A GAPDH, glyceraldehyde 3 20.9 89 0.0031 25.4 3.8 32 58-89 235-266 (345)
74 3v1y_O PP38, glyceraldehyde-3- 20.8 82 0.0028 25.4 3.5 33 58-90 236-268 (337)
75 1xbr_A Protein (T protein); co 20.6 13 0.00045 27.5 -1.1 28 42-69 80-111 (184)
76 1h6f_A T-box transcription fac 20.5 13 0.00046 27.6 -1.1 28 42-69 83-114 (193)
77 3lvf_P GAPDH 1, glyceraldehyde 20.0 1E+02 0.0035 24.9 3.9 33 58-90 236-269 (338)
78 1ub4_A MAZF protein; toxin, an 20.0 55 0.0019 21.1 2.0 25 15-39 5-35 (110)
79 2yyy_A Glyceraldehyde-3-phosph 20.0 1E+02 0.0036 24.2 4.0 31 59-89 220-250 (343)
No 1
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=100.00 E-value=7.2e-52 Score=301.87 Aligned_cols=101 Identities=37% Similarity=0.612 Sum_probs=98.8
Q ss_pred cccceeeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCCCCCcceeeecCceeecceEEE-ecCCCChHHHHHHHHh
Q psy2756 10 GAFKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKIN-FPFNARTKVVRKAWKD 88 (112)
Q Consensus 10 m~f~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~tgV~Rq~i~~k~l~LT~~~i~-i~r~a~t~~v~ka~~~ 88 (112)
|+|+||||+||||++++|||+||||+|||||||||||||||+ ||||++||+||+||+|+|+ |||||++++|+|||++
T Consensus 1 ~~f~rfvevGRVv~i~~G~~aGklavIVdIID~nrvLVdGp~--V~Rq~~n~k~l~LT~~~v~~i~r~a~t~~v~ka~~~ 78 (126)
T 4a18_F 1 MVFNKFVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGEH--IVRQVIPIRRVHLTKFQIDNVELNQRTVLLKKKIAK 78 (126)
T ss_dssp -CCCCEEETTEEEEECSSTTTTEEEEEEEEETTTEEEEEETT--EEEEEEEGGGEEEEEEECTTCCTTCCHHHHHHHHHH
T ss_pred CCcccceecceEEEEccCCccCCEEEEEEEecCCeEEEeCCC--cccceeeccceEEcceeccccCCCCCcHHHHHHHHH
Confidence 799999999999999999999999999999999999999997 9999999999999999998 9999999999999999
Q ss_pred cchHHHHhhcHHHHHHHHHHHhhC
Q psy2756 89 GQVEEKWSKSLWAQKVANVEKRKK 112 (112)
Q Consensus 89 a~i~~kw~~s~waKk~~~~~~R~~ 112 (112)
++|++||++|+||||++++++|++
T Consensus 79 a~i~~kw~~s~wakK~~~~~~Ra~ 102 (126)
T 4a18_F 79 FDLTKKYAETSFAKKQAIKTKRAN 102 (126)
T ss_dssp HTHHHHHHHSHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhHHHHHHHHHHHHHc
Confidence 999999999999999999999985
No 2
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=100.00 E-value=1.3e-49 Score=293.53 Aligned_cols=104 Identities=46% Similarity=0.772 Sum_probs=102.6
Q ss_pred ccccceeeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCCCCCcceeeecCceeecceEEEecCCCChHHHHHHHHh
Q psy2756 9 NGAFKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKD 88 (112)
Q Consensus 9 ~m~f~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~tgV~Rq~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~ 88 (112)
.|+|+||||+||||++.+|||+||+||||||||+||||||||++||+||.+|++||+||+++++|||||++++|+|||++
T Consensus 8 ~~~f~rfve~GrVV~i~~Gr~aGk~avIV~iiD~~rVLVDGp~~gV~R~~~n~khL~lT~~~v~i~r~a~t~~v~ka~~~ 87 (138)
T 3izc_N 8 KASNWRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAA 87 (138)
T ss_dssp SCCCCCCSSTTEEEECCSCSSSCCEEEEEEECSSSEEEEECSSSSCCCEEEECSSSEEEEEECCCCSCCCHHHHHHHHHH
T ss_pred hhhhhhhcccCeEEEEeeCCCCCCEEEEEEEecCCEEEEEcCCCCcccceechhHeEEecEEEEccCCCCcHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHhhcHHHHHHHHHHHhhC
Q psy2756 89 GQVEEKWSKSLWAQKVANVEKRKK 112 (112)
Q Consensus 89 a~i~~kw~~s~waKk~~~~~~R~~ 112 (112)
++|++||++|+||||++++++|++
T Consensus 88 a~i~~kw~~s~wakk~~~~~~Ra~ 111 (138)
T 3izc_N 88 AAVCEKWAASSWAKKIAQRERRAA 111 (138)
T ss_dssp HCSHHHHHHHSSSCCHHHHHHHHC
T ss_pred cCHHHHHHHhHHHHHHHHHHHHHc
Confidence 999999999999999999999985
No 3
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=100.00 E-value=2.9e-48 Score=285.20 Aligned_cols=101 Identities=35% Similarity=0.620 Sum_probs=99.6
Q ss_pred cccceeeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCCCCCcceeeecCceeecceEEEecCCCChHHHHHHHHhc
Q psy2756 10 GAFKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKDG 89 (112)
Q Consensus 10 m~f~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~tgV~Rq~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a 89 (112)
|+|+||||+||||++.+|||+||+||||||||+||||||||+ |+||.+|++||+||+++++|||||++++|++||+++
T Consensus 1 ~~f~rfvevGRVV~i~~Gr~aGk~avIV~iiD~~rvLVdG~~--v~Rk~~n~khL~lT~~~v~i~r~a~~~~v~ka~~~a 78 (134)
T 3iz5_N 1 MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDIKIDIKRVPKKTTLIKAMEEA 78 (134)
T ss_dssp CCCCCSCCSSEEEECSCCSSSCCEEEEEEECSSSEEEEEETT--EEEEEEECTTSEEEEEECCCCSCCCHHHHHHHHHHH
T ss_pred CCcccccccCeEEEEeeCCCCCCEEEEEEEcCCCeEEEeCCC--ccceeechhHeEEeCEEEeccCCCCcHHHHHHHHHc
Confidence 899999999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred chHHHHhhcHHHHHHHHHHHhhC
Q psy2756 90 QVEEKWSKSLWAQKVANVEKRKK 112 (112)
Q Consensus 90 ~i~~kw~~s~waKk~~~~~~R~~ 112 (112)
+|++||++|+||||++++++|++
T Consensus 79 ~i~~kw~~s~wakk~~~~~~Ra~ 101 (134)
T 3iz5_N 79 DVKNKWENSSWGKKLIVQKRRAS 101 (134)
T ss_dssp CTHHHHHHHSSSCCHHHHHHHHS
T ss_pred CHHHHHHHhHHHHHHHHHHHHHc
Confidence 99999999999999999999985
No 4
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.97 E-value=5.3e-32 Score=184.37 Aligned_cols=78 Identities=26% Similarity=0.436 Sum_probs=76.4
Q ss_pred eeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCC-CCCcceeeecCceeecceEEEecCCCChHHHHHHHHhcchH
Q psy2756 15 FVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE-TGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQVE 92 (112)
Q Consensus 15 fVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~-tgV~Rq~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a~i~ 92 (112)
|+|+||||++.+|||+||+|+||||+|+||||||||+ +||+||.+|++||+||++++++++++++++|++||++++|+
T Consensus 3 ~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~~vlV~g~~~~~v~rk~kn~khl~lt~~~i~~~~~~~~~~vrkal~~~~i~ 81 (83)
T 3j21_5 3 AIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGAGLNKVKRRRMNIKHIEPLPQKIDIPRGASDEEVRAALEKAGIS 81 (83)
T ss_dssp CCCTTEEEECSSSSSSCCCEEEEEECSSSCEEEECCTTTTCCCEEESCSSCEEEEEECCCCSSCCTTTSHHHHHHHTCS
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEcCCCEEEEECCccCccCCeEechHHEEEeeEEEECCCCCChHHHHHHHHHccCc
Confidence 8999999999999999999999999999999999998 89999999999999999999999999999999999999985
No 5
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=99.97 E-value=1.9e-31 Score=185.10 Aligned_cols=84 Identities=30% Similarity=0.448 Sum_probs=82.7
Q ss_pred eeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCC--CCCcceeeecCceeecceEEEecCCCChHHHHHHHHhcchH
Q psy2756 15 FVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE--TGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQVE 92 (112)
Q Consensus 15 fVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~--tgV~Rq~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a~i~ 92 (112)
|+|+||||++.+|||+||+|||||++|+|+||||||+ ++++|+.+|++||+||++++++|++++++++++||+++++.
T Consensus 3 ~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~~vLV~gp~~~~~~~rk~~n~khl~~T~~~vdi~~~~~~~~vrkal~~~~i~ 82 (96)
T 2joy_A 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLT 82 (96)
T ss_dssp SSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCEEEEEECCCCSSCCHHHHHHHHHHTTCH
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEeCCCEEEEECCcccCCcCCEEEchHHEEEeeEEEeCCCCCChHHHHHHHHHcchH
Confidence 7999999999999999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred HHHhhc
Q psy2756 93 EKWSKS 98 (112)
Q Consensus 93 ~kw~~s 98 (112)
++|+++
T Consensus 83 ~k~~~~ 88 (96)
T 2joy_A 83 EYMKEK 88 (96)
T ss_dssp HHHHCC
T ss_pred HHHhhh
Confidence 999986
No 6
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=99.80 E-value=2.6e-20 Score=138.15 Aligned_cols=62 Identities=32% Similarity=0.529 Sum_probs=58.6
Q ss_pred ceeeeeceEEEEecCCCCCceEEEEEeeeC-------CeEEEeC----CC--CC-------Cccee-------eecCcee
Q psy2756 13 KRFVQTGRVVRISDGPYRGKLSSIVDVINQ-------TTVLVDG----PE--TG-------VPRSA-------LRLNQLH 65 (112)
Q Consensus 13 ~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~-------nRvLVDG----P~--tg-------V~Rq~-------i~~k~l~ 65 (112)
.+|+|+||||++.+|||+||+||||+++|+ ++||||| |. |+ ++|+. +|++||.
T Consensus 2 ~kf~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl~ 81 (144)
T 4a18_N 2 AKFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHIM 81 (144)
T ss_dssp CCCCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGEE
T ss_pred CccccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeEE
Confidence 379999999999999999999999999999 8999999 98 66 88988 9999999
Q ss_pred ecceEE--Eec
Q psy2756 66 LTKLKI--NFP 74 (112)
Q Consensus 66 LT~~~i--~i~ 74 (112)
||++++ +||
T Consensus 82 pTry~v~~di~ 92 (144)
T 4a18_N 82 PTRYSVKELCD 92 (144)
T ss_dssp EEEEECSTTCC
T ss_pred EeeEEeeccCc
Confidence 999999 886
No 7
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=99.47 E-value=1.6e-14 Score=113.03 Aligned_cols=61 Identities=23% Similarity=0.401 Sum_probs=58.3
Q ss_pred eeeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCC--CCCcceeeecCceeecceEEEec
Q psy2756 14 RFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE--TGVPRSALRLNQLHLTKLKINFP 74 (112)
Q Consensus 14 rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~--tgV~Rq~i~~k~l~LT~~~i~i~ 74 (112)
.=+++|+|+++..|+++||.||+++++|+|.+||+||. +|||++.+|.+++.+|+.+|+|+
T Consensus 73 ~si~pGtVlIil~Gr~~GKrvVfLkqL~sgllLVtGP~~lNgVplrR~~qk~viaTstkIdIs 135 (219)
T 3iz5_G 73 STITPGTVLILLAGRYMGKRVVFLKQLQSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDIS 135 (219)
T ss_dssp HHCSCCSCEECSSSSSSCCEECEEEESSSSSEEECCCCSSSCCCCEEESSSSCEECSCCCSCS
T ss_pred ccccCCCEEEEeccccCCcEEEEEEecCCCeEEEcCCccccCCccEEechhhEEecceEeecC
Confidence 34899999999999999999999999999999999998 89999999999999999999876
No 8
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=99.25 E-value=8.2e-12 Score=96.12 Aligned_cols=63 Identities=24% Similarity=0.417 Sum_probs=60.3
Q ss_pred cceeeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCC--CCCcceeeecCceeecceEEEec
Q psy2756 12 FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE--TGVPRSALRLNQLHLTKLKINFP 74 (112)
Q Consensus 12 f~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~--tgV~Rq~i~~k~l~LT~~~i~i~ 74 (112)
-..++++|+|+++..|+++||.|||+..+|.+.+||.||. +|||.+.+|.+|+..|..+|+|+
T Consensus 41 lr~si~pGtVlIiL~Gr~~GKrvV~LKql~sgllLVtGP~~vn~vplrrvn~~~vi~TstkvDis 105 (191)
T 4a18_E 41 LRNDIAPGTVLILLAGRFRGKRVVFLKQLKSGLLLVTGPYKVNGVPLKRVNQAYTLSTSTKVDLT 105 (191)
T ss_dssp CCTTCCTTEEEEECSSTTTTBEEEEEEECTTSCEEEECCTTTSSCCSEEECGGGEEEEEEECCCT
T ss_pred hhccccCCCEEEEeccccCCCEEEEEEecCCCeEEEecCccccCCceEEEeeeeEEeeeeEeecc
Confidence 3679999999999999999999999999999999999998 89999999999999999999886
No 9
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=99.24 E-value=3.5e-14 Score=104.49 Aligned_cols=61 Identities=30% Similarity=0.516 Sum_probs=53.7
Q ss_pred eeeeeceEEEEecCCCCCceEEEEEeeeCC-------eEEEeC----CC--CC-------Ccceee-------ecCceee
Q psy2756 14 RFVQTGRVVRISDGPYRGKLSSIVDVINQT-------TVLVDG----PE--TG-------VPRSAL-------RLNQLHL 66 (112)
Q Consensus 14 rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~n-------RvLVDG----P~--tg-------V~Rq~i-------~~k~l~L 66 (112)
+|+++|+||++..|+|+||.||||+.+|++ +|||.| |. |+ .+|..| |++||.|
T Consensus 3 Kf~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdryP~kvt~~Mgkkki~KrskiK~FvKv~NynHlmP 82 (136)
T 3izc_a 3 KFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLP 82 (136)
T ss_dssp --CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSSSCCCCCCSSSCCCCCCTTHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccCChhhhhccCHHHHHhhhhceeeeEEEeccceee
Confidence 699999999999999999999999999998 999999 77 33 467555 9999999
Q ss_pred cceEEEec
Q psy2756 67 TKLKINFP 74 (112)
Q Consensus 67 T~~~i~i~ 74 (112)
|.+.++|+
T Consensus 83 TRy~vdi~ 90 (136)
T 3izc_a 83 TRYTLDVE 90 (136)
T ss_dssp HHHHHHHH
T ss_pred eeeeEccc
Confidence 99999886
No 10
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=99.22 E-value=3.5e-14 Score=104.48 Aligned_cols=61 Identities=25% Similarity=0.525 Sum_probs=55.2
Q ss_pred eeeeeceEEEEecCCCCCceEEEEEeeeCC-------eEEEeC----CC--CC-------Ccceee-------ecCceee
Q psy2756 14 RFVQTGRVVRISDGPYRGKLSSIVDVINQT-------TVLVDG----PE--TG-------VPRSAL-------RLNQLHL 66 (112)
Q Consensus 14 rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~n-------RvLVDG----P~--tg-------V~Rq~i-------~~k~l~L 66 (112)
+|+++|+||++..|+|+||.||||+.+|++ +|||.| |. |+ .+|..| |++||.|
T Consensus 3 K~~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdryP~kvt~~M~kkki~KrskiK~FvKv~NynHlmP 82 (136)
T 3iz5_a 3 KFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHLMP 82 (136)
T ss_dssp SSCCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCSTTTTCCCCCCSSSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeeccCChhhccCCCHHHhhhhhhceeeeEEEeecceec
Confidence 699999999999999999999999999999 999999 77 33 466555 9999999
Q ss_pred cceEEEec
Q psy2756 67 TKLKINFP 74 (112)
Q Consensus 67 T~~~i~i~ 74 (112)
|.+.++|+
T Consensus 83 TRY~vdi~ 90 (136)
T 3iz5_a 83 TRYTLDVD 90 (136)
T ss_dssp HHHHHHHH
T ss_pred cceEeecc
Confidence 99999986
No 11
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=98.72 E-value=6.6e-09 Score=79.14 Aligned_cols=62 Identities=24% Similarity=0.423 Sum_probs=58.1
Q ss_pred ceeeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCC--CCCcceeeecCceeecceEEEec
Q psy2756 13 KRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE--TGVPRSALRLNQLHLTKLKINFP 74 (112)
Q Consensus 13 ~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~--tgV~Rq~i~~k~l~LT~~~i~i~ 74 (112)
+.=+++|+|+++-.|+++||.||++..+|.+-+||.||- +|||.+.+|-+++..|+-+|+|+
T Consensus 31 R~Si~pGtvlIil~Gr~~GkrvVfLKql~sglllVTGP~~lNgvplrR~~q~~vIaTstkidis 94 (176)
T 3izc_G 31 RASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVE 94 (176)
T ss_dssp HHHCCCCSCEECCSSSSSCCCBEEEEESSSSSEEEECCCSSSCCCCEEESSSSCEECSCCCSSS
T ss_pred cccCCCCCEEEEeccccCCCEEEEEEecCCCeEEEecCceecCCcceeeecceEEeeeeeeecc
Confidence 344789999999999999999999999999999999998 79999999999999999998876
No 12
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.55 E-value=0.086 Score=34.59 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=32.7
Q ss_pred cceeeeeceEEEEecCCCCCceEEEEEeeeCC-eEEEeCCC
Q psy2756 12 FKRFVQTGRVVRISDGPYRGKLSSIVDVINQT-TVLVDGPE 51 (112)
Q Consensus 12 f~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~n-RvLVDGP~ 51 (112)
|.|---+|.-|.|..|||+|-++.|.|.-|.. ||..+..+
T Consensus 14 ~grd~liGktV~I~kGpyKG~~GiVkd~t~~~~RVELhs~~ 54 (71)
T 2e70_A 14 RRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTC 54 (71)
T ss_dssp CCTTSSTTSEEEECSSTTTTCEEEEEEECSSCEEEEESSSC
T ss_pred cCccccCCCEEEEeccCCCCeEEEEEECCCCeEEEEecCCc
Confidence 44555689999999999999999999998755 77776664
No 13
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=94.36 E-value=0.11 Score=36.03 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=31.3
Q ss_pred eeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCC
Q psy2756 16 VQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE 51 (112)
Q Consensus 16 VEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~ 51 (112)
+..|--|.|..|+++||...|..|+-.|+|+|+|=.
T Consensus 4 IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ViVeGvN 39 (102)
T 3r8s_U 4 IRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGIN 39 (102)
T ss_dssp SCSSCEEEECSSSSTTCEEEEEEEETTTEEEETTCS
T ss_pred ccCCCEEEEeEcCCCCeeeEEEEEEeCCEEEEeCeE
Confidence 456767788899999999999999967999999964
No 14
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=94.06 E-value=0.048 Score=38.41 Aligned_cols=56 Identities=20% Similarity=0.367 Sum_probs=43.2
Q ss_pred eeeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCCCC--------------CC--cceeeecCceeecceE
Q psy2756 15 FVQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGPET--------------GV--PRSALRLNQLHLTKLK 70 (112)
Q Consensus 15 fVEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~t--------------gV--~Rq~i~~k~l~LT~~~ 70 (112)
-+..|--|.|..|+++||...|..|+ +.|+|+|+|=.. |+ .=..|.++++.|++..
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEGvN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~lv~p~ 87 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPE 87 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBSSS
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCcEeEEEecCCCcCCCCCCEEEEEcccCHHHEEEEecc
Confidence 37789999999999999999999999 778999999641 11 1134566788887643
No 15
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=93.94 E-value=0.064 Score=38.24 Aligned_cols=56 Identities=18% Similarity=0.367 Sum_probs=42.6
Q ss_pred eeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCCC-----CCCcceeeecCceeecceEE
Q psy2756 16 VQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGPE-----TGVPRSALRLNQLHLTKLKI 71 (112)
Q Consensus 16 VEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~-----tgV~Rq~i~~k~l~LT~~~i 71 (112)
|..|--|.|..|+|.||..-|+.|. +.++|+|+|-. .|-.=-.|...++.|++...
T Consensus 43 IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEgvn~kK~~Gg~~e~pIh~SNV~i~~~~~ 104 (120)
T 1vq8_T 43 VNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDL 104 (120)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEECSSSCEEECCBCGGGEEEEECCC
T ss_pred ccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeCeEeEcCCCCEEEeeechHHEEEEeccC
Confidence 6779999999999999999999998 77899999972 23112345566677766543
No 16
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=93.41 E-value=0.079 Score=38.89 Aligned_cols=56 Identities=18% Similarity=0.457 Sum_probs=42.2
Q ss_pred eeeceEEEEecCCCCCce-EEEEEee-eCCeEEEeCCC----CCCcc-eeeecCceeecceEE
Q psy2756 16 VQTGRVVRISDGPYRGKL-SSIVDVI-NQTTVLVDGPE----TGVPR-SALRLNQLHLTKLKI 71 (112)
Q Consensus 16 VEvGRVv~i~~Gp~aGKl-~vIVdIi-D~nRvLVDGP~----tgV~R-q~i~~k~l~LT~~~i 71 (112)
|..|--|.|..|+|.||. ..|+.|+ +.++|+|+|-. +|+.. -.|.+.++.|++...
T Consensus 49 IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEgvn~~Kp~G~~~e~PIh~SNV~lv~~~~ 111 (145)
T 2zkr_t 49 IRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKL 111 (145)
T ss_dssp CCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETTCEEECSSCCEEECCBCGGGEEECC-CC
T ss_pred cCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEeeeEeEcCCCceEEeccCHHHEEEEcCcC
Confidence 778999999999999999 9999998 77899999975 23211 235556666666543
No 17
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=93.06 E-value=0.15 Score=34.86 Aligned_cols=31 Identities=35% Similarity=0.513 Sum_probs=26.5
Q ss_pred EEEEecCCCCCceEEEEEee-eCCeEEEeCCC
Q psy2756 21 VVRISDGPYRGKLSSIVDVI-NQTTVLVDGPE 51 (112)
Q Consensus 21 Vv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~ 51 (112)
-|.|..|.++||...|..|+ +.|+|+|+|=.
T Consensus 3 ~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeGvN 34 (96)
T 2ftc_N 3 TVEILEGKDAGKQGKVVQVIRQRNWVVVGGLN 34 (96)
T ss_pred EEEEeEcCCCCcEEEEEEEECCCCEEEEeCCE
Confidence 35566799999999999999 78899999953
No 18
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.94 E-value=0.11 Score=37.06 Aligned_cols=56 Identities=25% Similarity=0.497 Sum_probs=41.6
Q ss_pred eeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCCC----CCCcc-eeeecCceeecceEE
Q psy2756 16 VQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGPE----TGVPR-SALRLNQLHLTKLKI 71 (112)
Q Consensus 16 VEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~----tgV~R-q~i~~k~l~LT~~~i 71 (112)
|..|--|.|..|+|+||...|+.|+ +.++|+|+|-. .|.+. ..|.+.++.|++..+
T Consensus 46 IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEgvn~~k~~G~~~e~pIh~SNV~l~~~~~ 107 (121)
T 3j21_U 46 VRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNL 107 (121)
T ss_dssp CCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETTCEEECSSSCEEECCBCGGGEEEEECCC
T ss_pred cccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeCeEEEecCCcEEEcccCHHHeEEEcCcc
Confidence 5678778888999999999999998 67899999964 23221 245566777766543
No 19
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=92.48 E-value=0.14 Score=31.01 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=27.1
Q ss_pred eeeceEEEEecCCCCCceEEEEEeeeCC-eEEE
Q psy2756 16 VQTGRVVRISDGPYRGKLSSIVDVINQT-TVLV 47 (112)
Q Consensus 16 VEvGRVv~i~~Gp~aGKl~vIVdIiD~n-RvLV 47 (112)
+++|--|.|..||++|--+.|.++-.++ |+.|
T Consensus 5 ~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V 37 (58)
T 1nz9_A 5 FREGDQVRVVSGPFADFTGTVTEINPERGKVKV 37 (58)
T ss_dssp CCTTCEEEECSGGGTTCEEEEEEEETTTTEEEE
T ss_pred cCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEE
Confidence 4789999999999999999999986554 6644
No 20
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=91.32 E-value=0.24 Score=34.63 Aligned_cols=55 Identities=22% Similarity=0.472 Sum_probs=40.5
Q ss_pred eeeeceEEEEecCCCCCceEEEEEeee-CCeEEEeCCC--------------CCCcc--eeeecCceeecce
Q psy2756 15 FVQTGRVVRISDGPYRGKLSSIVDVIN-QTTVLVDGPE--------------TGVPR--SALRLNQLHLTKL 69 (112)
Q Consensus 15 fVEvGRVv~i~~Gp~aGKl~vIVdIiD-~nRvLVDGP~--------------tgV~R--q~i~~k~l~LT~~ 69 (112)
-+..|--|.|..|+++||...|..|+- .|+|+|+|=. .|+-- ..|.++++.|++.
T Consensus 6 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEGvN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~lv~p 77 (110)
T 3v2d_Y 6 HVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICP 77 (110)
T ss_dssp SCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETTSSEEEEECCSSSSSTTCCEEEEECCEEGGGEEEBCT
T ss_pred ccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeCEEEEEEEeCCCccCCCCCEEEEECCcCHHHeEEEcC
Confidence 356787788889999999999999985 4899999843 12111 3566677777653
No 21
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=91.29 E-value=0.27 Score=35.37 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=42.5
Q ss_pred eeeceEEEEecCCCCCceEEEEEeeeC-CeEEEeCCC----CCCcc-eeeecCceeecceEEE
Q psy2756 16 VQTGRVVRISDGPYRGKLSSIVDVINQ-TTVLVDGPE----TGVPR-SALRLNQLHLTKLKIN 72 (112)
Q Consensus 16 VEvGRVv~i~~Gp~aGKl~vIVdIiD~-nRvLVDGP~----tgV~R-q~i~~k~l~LT~~~i~ 72 (112)
|.-|--|.|..|.|.|+..-|+.|+-. ++|+|+|-. .|... -.|...++.||+..++
T Consensus 50 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~~~~d 112 (127)
T 3u5e_Y 50 IRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLD 112 (127)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEETCEEECSSSCEEECCBCGGGEEEEECCCC
T ss_pred ccCCCEEEEeecCCCCccceEEEEECCCCEEEEeCeEEECCCCcEEEcccchHHEEEEccccC
Confidence 556888899999999999999999864 799999953 23211 2466677777776553
No 22
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=90.48 E-value=0.65 Score=32.74 Aligned_cols=53 Identities=21% Similarity=0.412 Sum_probs=37.1
Q ss_pred eeeeceEEEEecCCCCCceEEEEEeeeC-CeEEEeCCCCCCc-ceeeecCceeec
Q psy2756 15 FVQTGRVVRISDGPYRGKLSSIVDVINQ-TTVLVDGPETGVP-RSALRLNQLHLT 67 (112)
Q Consensus 15 fVEvGRVv~i~~Gp~aGKl~vIVdIiD~-nRvLVDGP~tgV~-Rq~i~~k~l~LT 67 (112)
-+++|--|.|..||++|-.+.|.++-.+ +++.|.---.|-+ --.+++.+++..
T Consensus 91 ~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i 145 (152)
T 3p8b_B 91 GLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLI 145 (152)
T ss_dssp TCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEE
T ss_pred cCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEe
Confidence 3579999999999999999999998644 5666655433321 134566555543
No 23
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=89.15 E-value=0.49 Score=34.93 Aligned_cols=57 Identities=21% Similarity=0.425 Sum_probs=43.5
Q ss_pred eeeceEEEEecCCCCCceEEEEEeeeC-CeEEEeCCC----CCCcc-eeeecCceeecceEEE
Q psy2756 16 VQTGRVVRISDGPYRGKLSSIVDVINQ-TTVLVDGPE----TGVPR-SALRLNQLHLTKLKIN 72 (112)
Q Consensus 16 VEvGRVv~i~~Gp~aGKl~vIVdIiD~-nRvLVDGP~----tgV~R-q~i~~k~l~LT~~~i~ 72 (112)
|..|--|.|..|.|.||..-|+.|+-. ++|+|+|-. .|-+. -.|...++.||+...+
T Consensus 49 IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VEGVN~~K~~G~~~eapIh~SNV~i~~~k~d 111 (150)
T 3iz5_Y 49 IRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLD 111 (150)
T ss_dssp CCSSSEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEECTTSCEEECCBCGGGEEEEECCCC
T ss_pred cCCCCEEEEeecCCCCccceEEEEEcCCCEEEEeCcEEEeCCCCEEecccchHHEEEEcccCC
Confidence 567888899999999999999999864 799999954 23222 2566778888876653
No 24
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=87.97 E-value=0.54 Score=34.12 Aligned_cols=56 Identities=30% Similarity=0.449 Sum_probs=41.9
Q ss_pred eeeceEEEEecCCCCCceEEEEEeee-CCeEEEeCCC----CCCcc-eeeecCceeecceEE
Q psy2756 16 VQTGRVVRISDGPYRGKLSSIVDVIN-QTTVLVDGPE----TGVPR-SALRLNQLHLTKLKI 71 (112)
Q Consensus 16 VEvGRVv~i~~Gp~aGKl~vIVdIiD-~nRvLVDGP~----tgV~R-q~i~~k~l~LT~~~i 71 (112)
|.-|--|.|..|.|.|+..-|+.|+- .++|+|+|-. .|... -.|...++.||+..+
T Consensus 49 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~~k~ 110 (135)
T 4a17_S 49 VRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEKISKNKLNGAPYQIPLSASQLVLTKLKL 110 (135)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCCEEETTTEEECCCBCGGGEEEEECCC
T ss_pred ccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeCeEEEcCCCCEEEcccchHHEEEEcccC
Confidence 56688889999999999999999985 4799999964 22111 256667777777654
No 25
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=87.39 E-value=0.66 Score=33.44 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=29.5
Q ss_pred eeeeceEEEEecCCCCCceEEEEEeeeC-CeE--EEeCC
Q psy2756 15 FVQTGRVVRISDGPYRGKLSSIVDVINQ-TTV--LVDGP 50 (112)
Q Consensus 15 fVEvGRVv~i~~Gp~aGKl~vIVdIiD~-nRv--LVDGP 50 (112)
..++|.-|.|..||++|--+.|.+|-++ +|+ +|+--
T Consensus 127 ~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~if 165 (181)
T 2jvv_A 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIF 165 (181)
T ss_dssp CCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEET
T ss_pred cCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEEC
Confidence 4579999999999999999999998755 477 55554
No 26
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.44 E-value=0.67 Score=28.49 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=26.0
Q ss_pred eeeceEEEEecCCCCCceEEEEEeeeCCeEEE
Q psy2756 16 VQTGRVVRISDGPYRGKLSSIVDVINQTTVLV 47 (112)
Q Consensus 16 VEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLV 47 (112)
.++|-.|.|..||++|-.+.|.++ |..++.|
T Consensus 8 f~~GD~V~V~~Gpf~g~~G~V~ev-d~e~v~V 38 (59)
T 2e6z_A 8 FQPGDNVEVCEGELINLQGKILSV-DGNKITI 38 (59)
T ss_dssp CCTTSEEEECSSTTTTCEEEECCC-BTTEEEE
T ss_pred CCCCCEEEEeecCCCCCEEEEEEE-eCCEEEE
Confidence 489999999999999999999986 4456544
No 27
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=84.06 E-value=0.11 Score=39.75 Aligned_cols=36 Identities=25% Similarity=0.520 Sum_probs=32.6
Q ss_pred eeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCCC
Q psy2756 16 VQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGPE 51 (112)
Q Consensus 16 VEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~ 51 (112)
|..|--|.|..|+|+||...|..|+ +.|+|+|+|=.
T Consensus 69 IkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVEGVN 105 (191)
T 3bbo_W 69 VKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLN 105 (191)
T ss_dssp SCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCSSCC
T ss_pred eecCCEEEEeecCCCCceEEEEEEECCCCEEEEeCCE
Confidence 7789889999999999999999998 77899999964
No 28
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=81.45 E-value=1.9 Score=34.24 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=33.6
Q ss_pred ccccceeeeeceEEEEecCCCCCceEEEEEeeeC----CeEEEeCC
Q psy2756 9 NGAFKRFVQTGRVVRISDGPYRGKLSSIVDVINQ----TTVLVDGP 50 (112)
Q Consensus 9 ~m~f~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~----nRvLVDGP 50 (112)
..-|=.| |.|-+|+|+.|.+.|+..+|+++..+ |.|.|...
T Consensus 171 I~d~ikf-e~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd~ 215 (260)
T 2xzm_W 171 IENFAHL-ESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDA 215 (260)
T ss_dssp EECCCBC-CSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEECT
T ss_pred eeeEEEe-cCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEeC
Confidence 3445566 99999999999999999999997666 67888543
No 29
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=77.61 E-value=5.8 Score=27.82 Aligned_cols=36 Identities=25% Similarity=0.673 Sum_probs=26.9
Q ss_pred eeceEEEEecCCCCCceEEEEEeeeCC--eE--EEe-CCCCC
Q psy2756 17 QTGRVVRISDGPYRGKLSSIVDVINQT--TV--LVD-GPETG 53 (112)
Q Consensus 17 EvGRVv~i~~Gp~aGKl~vIVdIiD~n--Rv--LVD-GP~tg 53 (112)
++|.-|.|-.|+|.|..+.++++ |.+ .+ -+| ||..+
T Consensus 72 ~~g~~V~Iv~G~~rG~~g~L~~i-d~~~~~~~V~l~~~~~~~ 112 (127)
T 2ckk_A 72 APGKRILVLNGGYRGNEGTLESI-NEKTFSATIVIETGPLKG 112 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEE-EGGGTEEEEEECSSTTTT
T ss_pred CCCCEEEEEecccCCcEEEEEEE-eCCCcEEEEEEccCCCCC
Confidence 36888888889999999999998 544 44 344 77543
No 30
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=73.80 E-value=2.3 Score=32.82 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=23.5
Q ss_pred eeceEEEEecCCCCCceEEEEEeee
Q psy2756 17 QTGRVVRISDGPYRGKLSSIVDVIN 41 (112)
Q Consensus 17 EvGRVv~i~~Gp~aGKl~vIVdIiD 41 (112)
|.|-+|+|+.|.+.|+.++|.++--
T Consensus 140 ~~G~l~mvtgG~n~GriG~I~~ie~ 164 (213)
T 3kbg_A 140 QPGNKAYITAGSHVNQTGTISKIEA 164 (213)
T ss_dssp STTCEEEECSSTTTTCEEEEEEECC
T ss_pred CCCCEEEEECCCcceEEEEEEEEEE
Confidence 7899999999999999999999964
No 31
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=71.03 E-value=2.8 Score=32.86 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=28.4
Q ss_pred eeceEEEEecCCCCCceEEEEEeee-----CCeEEEeCC
Q psy2756 17 QTGRVVRISDGPYRGKLSSIVDVIN-----QTTVLVDGP 50 (112)
Q Consensus 17 EvGRVv~i~~Gp~aGKl~vIVdIiD-----~nRvLVDGP 50 (112)
|.|-+|+|+.|.+.|+..+|++|-- .+-|-|...
T Consensus 180 ~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~ 218 (243)
T 3j20_E 180 EKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDE 218 (243)
T ss_dssp CTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEES
T ss_pred cCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcC
Confidence 6799999999999999999999976 356666543
No 32
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=69.53 E-value=5.1 Score=32.54 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=27.6
Q ss_pred eeeeceEEEEecCCCCCceEEEEEeeeCC-eEEE
Q psy2756 15 FVQTGRVVRISDGPYRGKLSSIVDVINQT-TVLV 47 (112)
Q Consensus 15 fVEvGRVv~i~~Gp~aGKl~vIVdIiD~n-RvLV 47 (112)
..++|--|.|..||++|--+.|.++-.++ |+.|
T Consensus 298 ~f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V 331 (352)
T 2xhc_A 298 GFKVGDMVKIISGPFEDFAGVIKEIDPERQELKV 331 (352)
T ss_dssp CCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEE
T ss_pred cCCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEE
Confidence 45799999999999999999999986544 6644
No 33
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=68.54 E-value=3.9 Score=32.54 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=28.5
Q ss_pred eeceEEEEecCCCCCceEEEEEeeeC----CeEEEeCC
Q psy2756 17 QTGRVVRISDGPYRGKLSSIVDVINQ----TTVLVDGP 50 (112)
Q Consensus 17 EvGRVv~i~~Gp~aGKl~vIVdIiD~----nRvLVDGP 50 (112)
|.|-+|+|+.|.+.|+..+|++|--+ +-|-|...
T Consensus 176 e~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~ 213 (265)
T 3iz6_D 176 DVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDA 213 (265)
T ss_dssp STTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECCC
T ss_pred cCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEEC
Confidence 67999999999999999999999765 45666544
No 34
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=60.93 E-value=4 Score=21.76 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=11.4
Q ss_pred eeceEEEEecCCCCC
Q psy2756 17 QTGRVVRISDGPYRG 31 (112)
Q Consensus 17 EvGRVv~i~~Gp~aG 31 (112)
|.||+||.-.||-..
T Consensus 2 elgrlvylldgpgyd 16 (26)
T 4a1x_C 2 ELGRLVYLLDGPGYD 16 (26)
T ss_pred ccceEEEEecCCCCC
Confidence 678999888887543
No 35
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=52.75 E-value=3.9 Score=32.46 Aligned_cols=34 Identities=21% Similarity=0.434 Sum_probs=28.6
Q ss_pred eeceEEEEecCCCCCceEEEEEeeeC----CeEEEeCC
Q psy2756 17 QTGRVVRISDGPYRGKLSSIVDVINQ----TTVLVDGP 50 (112)
Q Consensus 17 EvGRVv~i~~Gp~aGKl~vIVdIiD~----nRvLVDGP 50 (112)
|.|-+|+|+.|.+.|+..+|++|--+ +-|-|...
T Consensus 176 e~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~ 213 (261)
T 3u5c_E 176 DAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDS 213 (261)
T ss_dssp CSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEECT
T ss_pred cCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEEC
Confidence 67999999999999999999999765 46666544
No 36
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=51.81 E-value=16 Score=26.85 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.4
Q ss_pred CCCCCceEEEEEeeeC-CeEEEeCCC
Q psy2756 27 GPYRGKLSSIVDVINQ-TTVLVDGPE 51 (112)
Q Consensus 27 Gp~aGKl~vIVdIiD~-nRvLVDGP~ 51 (112)
-+..|-++++.|++|. .|+||.|-+
T Consensus 64 ~~~~Gev~tv~EvL~d~~RalV~~~~ 89 (153)
T 2wfw_A 64 YEQVGEISTLREVLDDGLRALVVGHA 89 (153)
T ss_dssp CCCSEEEEEEEEECTTSSEEEEECTT
T ss_pred CCCccCEEEEEEEeCCCCeEEEEccC
Confidence 3678999999999999 899999975
No 37
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=49.80 E-value=3.4 Score=31.99 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=0.0
Q ss_pred eeeeceEEEEecCCCCCceEEEEEeeeC-CeEEE
Q psy2756 15 FVQTGRVVRISDGPYRGKLSSIVDVINQ-TTVLV 47 (112)
Q Consensus 15 fVEvGRVv~i~~Gp~aGKl~vIVdIiD~-nRvLV 47 (112)
..++|-.|.|..||++|--++|.+|-.. +++.|
T Consensus 194 ~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V 227 (248)
T 1m1h_A 194 EFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV 227 (248)
T ss_dssp ----------------------------------
T ss_pred cCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEE
Confidence 3479999999999999999999998644 35543
No 38
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=47.73 E-value=27 Score=22.41 Aligned_cols=38 Identities=21% Similarity=0.450 Sum_probs=31.2
Q ss_pred cceeeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCC
Q psy2756 12 FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGP 50 (112)
Q Consensus 12 f~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP 50 (112)
.+++.++|-=|.+..|.|+|-...||.|- .++|.+=..
T Consensus 14 LrK~F~~GDHVkVi~G~~~getGlVV~v~-~d~v~v~SD 51 (69)
T 2do3_A 14 LRKYFKMGDHVKVIAGRFEGDTGLIVRVE-ENFVILFSD 51 (69)
T ss_dssp CCSSCCTTCEEEESSSTTTTCEEEEEEEC-SSCEEEEES
T ss_pred ceeeccCCCeEEEeccEEcCceEEEEEEe-CCEEEEEeC
Confidence 46888999999999999999999999875 556655544
No 39
>2k3a_A CHAP domain protein; monomer, putative amidase, structural genomics, PSI-2, protein structure initiative; NMR {Staphylococcus saprophyticus subsp} PDB: 2lrj_A
Probab=43.41 E-value=24 Score=25.56 Aligned_cols=31 Identities=23% Similarity=0.498 Sum_probs=26.2
Q ss_pred eeceEEEEecCCCCCceEEEEEeeeCCeEEEe
Q psy2756 17 QTGRVVRISDGPYRGKLSSIVDVINQTTVLVD 48 (112)
Q Consensus 17 EvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVD 48 (112)
++|-|+....|++ |..++|-+|.+.+.++|.
T Consensus 95 ~~Gai~~~~~g~y-GHVA~Ve~V~~dgsi~is 125 (155)
T 2k3a_A 95 EAGSILQSTAGGY-GHVAYVENVNSDGSVEVS 125 (155)
T ss_dssp CSSEEEECCTTSS-CCEEEEEEECTTCCEEEE
T ss_pred CcCEEEEeCCCCC-CeEEEEEEECCCCeEEEE
Confidence 5788887777875 999999999888899997
No 40
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=41.73 E-value=20 Score=28.21 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=26.8
Q ss_pred eeeceEEEEec---------CCCCCceEEEEEee-eCCeEEEeCCC
Q psy2756 16 VQTGRVVRISD---------GPYRGKLSSIVDVI-NQTTVLVDGPE 51 (112)
Q Consensus 16 VEvGRVv~i~~---------Gp~aGKl~vIVdIi-D~nRvLVDGP~ 51 (112)
+++|.=|.++. -+..|-++++.|++ |..|+||.|-+
T Consensus 135 LkPG~rVaLNeSlaVVevLp~E~~Gev~tv~E~l~d~~R~lV~~~~ 180 (251)
T 3m9b_A 135 LKKGQTVRLNEALTVVEAGTFEAVGEISTLREILADGHRALVVGHA 180 (251)
T ss_dssp SCSSCEEEECTTCCBCCCCCCCCCSEEEEEEEECTTSSEEEEECSS
T ss_pred CCCCCEEEeCCccEEEEecCCCCcccEEEEEEEecCCCEEEEecCC
Confidence 45665554443 25679999999999 55799999876
No 41
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=40.09 E-value=20 Score=23.14 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=21.7
Q ss_pred EEEEEeeeCCeEEEeCCCCCCcceeeecC---ceeecceEE
Q psy2756 34 SSIVDVINQTTVLVDGPETGVPRSALRLN---QLHLTKLKI 71 (112)
Q Consensus 34 ~vIVdIiD~nRvLVDGP~tgV~Rq~i~~k---~l~LT~~~i 71 (112)
+-|++| |.+.++||.. |+.|. +|+. ...+=|+++
T Consensus 7 ~kVvei-~~~~A~vd~~--Gv~r~-V~l~Lv~~~~vGD~VL 43 (75)
T 2z1c_A 7 GKVIEV-NGPVAVVDFG--GVKRE-VRLDLMPDTKPGDWVI 43 (75)
T ss_dssp EEEEEE-ETTEEEEEET--TEEEE-EECTTSTTCCTTCEEE
T ss_pred EEEEEE-CCCEEEEEcC--CEEEE-EEEEEeCCCCCCCEEE
Confidence 346777 7799999985 78774 4433 334455554
No 42
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=39.47 E-value=11 Score=30.17 Aligned_cols=11 Identities=55% Similarity=0.546 Sum_probs=9.7
Q ss_pred CeEEEeCCCCC
Q psy2756 43 TTVLVDGPETG 53 (112)
Q Consensus 43 nRvLVDGP~tg 53 (112)
.+||||-||||
T Consensus 225 D~VLlDaPCSg 235 (359)
T 4fzv_A 225 DRVLVDVPCTT 235 (359)
T ss_dssp EEEEEECCCCC
T ss_pred CEEEECCccCC
Confidence 38999999986
No 43
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=38.90 E-value=36 Score=23.63 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=28.9
Q ss_pred eeeeeceEEEEec-----CCCCCceEEEEEeeeCCeEEEeCCCCC
Q psy2756 14 RFVQTGRVVRISD-----GPYRGKLSSIVDVINQTTVLVDGPETG 53 (112)
Q Consensus 14 rfVEvGRVv~i~~-----Gp~aGKl~vIVdIiD~nRvLVDGP~tg 53 (112)
.++.+|=+|-|.+ | |.++.++|.||+|...+-|.=+.+|
T Consensus 13 ~Wl~~~I~Vrii~k~~~~g-~y~~KgvV~~V~~~~~c~V~l~~~g 56 (127)
T 2ckk_A 13 YWLQPEIIVKIITKKLGEK-YHKKKAIVKEVIDKYTAVVKMIDSG 56 (127)
T ss_dssp CCCCTTBEEEECCSTTCGG-GTTCEEEEEEEETTTEEEEEETTTC
T ss_pred CcccCCeEEEEEEccCCCc-ccCceEEEEEecCCCeEEEEECCCC
Confidence 4566676776642 5 9999999999998888777655444
No 44
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Probab=35.28 E-value=35 Score=27.09 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=28.3
Q ss_pred eeecCceeecceEEEecCCCChHHHHHHHHhc
Q psy2756 58 ALRLNQLHLTKLKINFPFNARTKVVRKAWKDG 89 (112)
Q Consensus 58 ~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a 89 (112)
.+|.-+.++.++.+.+.+.+..++++++|+++
T Consensus 236 rVP~~~g~~~dl~v~l~k~~t~eeI~~~lk~a 267 (339)
T 3b1j_A 236 RVPTPNVSVVDLVVQVEKPTITEQVNEVLQKA 267 (339)
T ss_dssp EESCSSCEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EeccCCEEEEEEEEEEcCcCCHHHHHHHHHHh
Confidence 56778889999999999999999999999865
No 45
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*
Probab=35.12 E-value=36 Score=27.07 Aligned_cols=34 Identities=9% Similarity=0.032 Sum_probs=29.6
Q ss_pred eeeecCceeecceEEEecCCCChHHHHHHHHhcc
Q psy2756 57 SALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQ 90 (112)
Q Consensus 57 q~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a~ 90 (112)
..+|.-+.++.++.+.+.+....++++++|+++.
T Consensus 229 ~RVPv~~gs~~dl~v~l~k~~t~eei~~~lk~a~ 262 (331)
T 2g82_O 229 LRVPTATGSISDITALLKREVTAEEVNAALKAAA 262 (331)
T ss_dssp EEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred EEeCCCCEEEEEEEEEECCCCCHHHHHHHHHHhh
Confidence 4578888999999999999999999999998763
No 46
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1
Probab=34.58 E-value=37 Score=26.67 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=27.6
Q ss_pred eeeecCceeecceEEEecCCCChHHHHHHHHhc
Q psy2756 57 SALRLNQLHLTKLKINFPFNARTKVVRKAWKDG 89 (112)
Q Consensus 57 q~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a 89 (112)
..+|.-+.+++++.+.+.+....+++.++|+++
T Consensus 233 ~rVP~~~g~~~~l~~~l~~~~t~eei~~~~~~a 265 (335)
T 1u8f_O 233 FRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQA 265 (335)
T ss_dssp EEESCSSCEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EEeccCCEEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 456778888888888888889999999999865
No 47
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1
Probab=34.04 E-value=41 Score=26.66 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=28.5
Q ss_pred eeeecCceeecceEEEecCCCChHHHHHHHHhc
Q psy2756 57 SALRLNQLHLTKLKINFPFNARTKVVRKAWKDG 89 (112)
Q Consensus 57 q~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a 89 (112)
..+|.-+.+++++.+.+.+....+++.++|+++
T Consensus 231 ~rVP~~~g~l~~l~~~l~k~~t~eei~~~lk~a 263 (332)
T 1hdg_O 231 IRVPTPDGSITDLTVLVEKETTVEEVNAVMKEA 263 (332)
T ss_dssp EEESCSSCEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EEccccCcEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 457788888999999999999999999999865
No 48
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Probab=33.91 E-value=37 Score=26.85 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=28.7
Q ss_pred eeeecCceeecceEEEecCCCChHHHHHHHHhc
Q psy2756 57 SALRLNQLHLTKLKINFPFNARTKVVRKAWKDG 89 (112)
Q Consensus 57 q~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a 89 (112)
..+|.-+.+++++.+.+.+....++++++|+++
T Consensus 230 ~rVP~~~g~~~~l~~~l~k~~t~eei~~~~k~a 262 (330)
T 1gad_O 230 FRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAA 262 (330)
T ss_dssp EECSCSSCEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EEeccccEEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 457788889999999999999999999999865
No 49
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=33.88 E-value=35 Score=22.11 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=14.3
Q ss_pred eEEEEEeeeCCeEEEe
Q psy2756 33 LSSIVDVINQTTVLVD 48 (112)
Q Consensus 33 l~vIVdIiD~nRvLVD 48 (112)
.+.+++++|.++++|-
T Consensus 21 vG~v~e~~dd~~~iVk 36 (85)
T 3h43_A 21 VGTVVDKVGERKVVVK 36 (85)
T ss_dssp EEEEEEEEETTEEEEE
T ss_pred EEEEEEEcCCCEEEEE
Confidence 4788999999999997
No 50
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Probab=33.58 E-value=42 Score=26.61 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=28.4
Q ss_pred eeeecCceeecceEEEecCCCChHHHHHHHHhc
Q psy2756 57 SALRLNQLHLTKLKINFPFNARTKVVRKAWKDG 89 (112)
Q Consensus 57 q~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a 89 (112)
..+|.-+.+++++.+.+.+....++++++|+++
T Consensus 231 ~rVP~~~gs~~~l~~~l~k~~t~eei~~~lk~a 263 (334)
T 3cmc_O 231 MRVPTPNVSVVDLVAELEKEVTVEEVNAALKAA 263 (334)
T ss_dssp EEESCSSCEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EEECCCCEEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 457788888899999999999999999999865
No 51
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Probab=33.41 E-value=40 Score=26.68 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=27.8
Q ss_pred eeeecCceeecceEEEecCCCChHHHHHHHHhc
Q psy2756 57 SALRLNQLHLTKLKINFPFNARTKVVRKAWKDG 89 (112)
Q Consensus 57 q~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a 89 (112)
..+|.-+.+++++.+.+.+....+++.++|+++
T Consensus 235 ~rVP~~~g~~~~l~~~l~k~~t~eei~~~~~~a 267 (337)
T 3e5r_O 235 FRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSA 267 (337)
T ss_dssp EEESCSSCEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EEeccCCeEEEEEEEEECCCccHHHHHHHHHHH
Confidence 356778888888888898889999999999865
No 52
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*
Probab=32.23 E-value=42 Score=27.00 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=28.8
Q ss_pred eeeecCceeecceEEEecCCCChHHHHHHHHhc
Q psy2756 57 SALRLNQLHLTKLKINFPFNARTKVVRKAWKDG 89 (112)
Q Consensus 57 q~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a 89 (112)
..+|.-+.+++++.+.+.+....++++++|+++
T Consensus 251 ~rVP~~~gs~~dl~~~l~k~~t~eeI~~~~k~a 283 (354)
T 3cps_A 251 IRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEA 283 (354)
T ss_dssp EEESCSSCEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EEeccCCEEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 457888899999999999999999999999865
No 53
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*
Probab=31.24 E-value=45 Score=26.59 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=28.9
Q ss_pred eeeecCceeecceEEEecCCCChHHHHHHHHhc
Q psy2756 57 SALRLNQLHLTKLKINFPFNARTKVVRKAWKDG 89 (112)
Q Consensus 57 q~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a 89 (112)
..+|.-+.+++++.+.+.+....++++++|+++
T Consensus 233 ~RVP~~~gs~~dl~~~l~k~~t~eei~~~lk~a 265 (337)
T 1rm4_O 233 LRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES 265 (337)
T ss_dssp EEESCSSCEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EEecCCCEEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 457788889999999999999999999999865
No 54
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1
Probab=31.19 E-value=48 Score=25.97 Aligned_cols=32 Identities=9% Similarity=0.128 Sum_probs=28.9
Q ss_pred eeecCceeecceEEEecCCCChHHHHHHHHhc
Q psy2756 58 ALRLNQLHLTKLKINFPFNARTKVVRKAWKDG 89 (112)
Q Consensus 58 ~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a 89 (112)
.+|..+.++.++.+.+.+.++.++++++|+++
T Consensus 212 rVPv~~gh~~~l~v~l~~~~t~eei~~~l~~a 243 (340)
T 1b7g_O 212 IAPTTLMHMHFINITLKDKVEKKDILSVLENT 243 (340)
T ss_dssp EESCSSCEEEEEEEEESSCCCHHHHHHHHHTC
T ss_pred EeccCCeEEEEEEEEECCCCCHHHHHHHHHcC
Confidence 57888899999999999999999999999865
No 55
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A
Probab=30.96 E-value=45 Score=27.21 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=29.6
Q ss_pred eeeecCceeecceEEEecCCCChHHHHHHHHhc
Q psy2756 57 SALRLNQLHLTKLKINFPFNARTKVVRKAWKDG 89 (112)
Q Consensus 57 q~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a 89 (112)
..+|.-+.+++++.+.+.+.+..++++++|+++
T Consensus 235 vRVPt~~gs~~dlt~~l~k~~t~eeI~~~lk~a 267 (380)
T 2d2i_A 235 LRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKA 267 (380)
T ss_dssp EEESCSSCEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EEeccCCEEEEEEEEEECCcCCHHHHHHHHHHH
Confidence 367888999999999999999999999999876
No 56
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*
Probab=29.74 E-value=44 Score=26.50 Aligned_cols=33 Identities=6% Similarity=0.047 Sum_probs=27.0
Q ss_pred eeecCceeecceEEEecCCCChHHHHHHHHhcc
Q psy2756 58 ALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQ 90 (112)
Q Consensus 58 ~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a~ 90 (112)
.+|.-+.++.++.+.+.+.+..++++++|+++-
T Consensus 236 rVP~~~g~~~~l~v~l~k~~t~eei~~~lk~a~ 268 (339)
T 2x5j_O 236 RVPTINVTAIDLSVTVKKPVKANEVNLLLQKAA 268 (339)
T ss_dssp ECSSCSCEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred EecccCcEEEEEEEEECCCCCHHHHHHHHHHHh
Confidence 355667788888899999999999999998653
No 57
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.86 E-value=56 Score=21.81 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=27.9
Q ss_pred eeeecCceeecceEEEecCCCChHHHHHHHHhc
Q psy2756 57 SALRLNQLHLTKLKINFPFNARTKVVRKAWKDG 89 (112)
Q Consensus 57 q~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a 89 (112)
-.|.++.+.-+.|.|+++..+.-+.|++++++.
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~ 40 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRY 40 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHH
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHH
Confidence 456777777788889999999999999999864
No 58
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=25.28 E-value=68 Score=22.24 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=22.7
Q ss_pred eeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCC
Q psy2756 16 VQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE 51 (112)
Q Consensus 16 VEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~ 51 (112)
+|+|..+.+.. ..++|++| +.++|.||+-.
T Consensus 104 ~~~G~~~~~~~-----~~~~V~~v-~~~~v~vD~NH 133 (151)
T 1ix5_A 104 PEEGMVILAEG-----IPATITEV-TDNEVTLDFNH 133 (151)
T ss_dssp CCTTEEEESSS-----CEEEEEEE-ETTEEEEECCC
T ss_pred ccccCEEEECC-----eEEEEEEE-cCCEEEEeCCC
Confidence 78898876543 66777776 66899999865
No 59
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*
Probab=25.10 E-value=67 Score=25.76 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=28.7
Q ss_pred eeecCceeecceEEEecCCCChHHHHHHHHhcc
Q psy2756 58 ALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQ 90 (112)
Q Consensus 58 ~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a~ 90 (112)
.+|.-+.++.++.+.+.+.+..++++++|+++.
T Consensus 235 RVPv~~~s~~dl~v~lek~~t~eei~~~lk~a~ 267 (335)
T 1obf_O 235 RVPTINVSIVDLSFVAKRNTTVEEVNGILKAAS 267 (335)
T ss_dssp EESCSSCEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred EeeccceEEEEEEEEECCCCCHHHHHHHHHHhh
Confidence 467778888999999999999999999998764
No 60
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A*
Probab=24.13 E-value=26 Score=30.51 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=23.0
Q ss_pred ccceeeeeceEEEEecCCC------------CCceEEEEEeeeCC
Q psy2756 11 AFKRFVQTGRVVRISDGPY------------RGKLSSIVDVINQT 43 (112)
Q Consensus 11 ~f~rfVEvGRVv~i~~Gp~------------aGKl~vIVdIiD~n 43 (112)
-|.|||.+|-+-+-..|.. .|++++||.-.+++
T Consensus 318 hfSkFIrPGa~RI~~s~~~~~~~~~vAf~npdG~~vvVv~t~~~~ 362 (656)
T 3zr5_A 318 HTTQFTQPGWYYLKTVGHLEKGGSYVALTDGLGNLTIIIETMSHQ 362 (656)
T ss_dssp HHHTTCCTTCEEESCCEECTTSCEEEEEECSSSCEEEEEECCCST
T ss_pred hhhcccCCCCEEEecccccCCCeeEEEEECCCCCEEEEEEecccc
Confidence 4889999997766533321 37888888866664
No 61
>2jrn_A CHAP domain protein; monomer, putative amidase, structural genomics, PSI-2, protein structure initiative; NMR {Staphylococcus saprophyticus} PDB: 2k3a_A 2lrj_A
Probab=23.26 E-value=80 Score=23.28 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=24.3
Q ss_pred eeceEEEEecCCCCCceEEEEEeeeCCeEEEe
Q psy2756 17 QTGRVVRISDGPYRGKLSSIVDVINQTTVLVD 48 (112)
Q Consensus 17 EvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVD 48 (112)
++|-|+....| ..|..|+|-+|.+.+.++|.
T Consensus 95 ~vGaI~~~~~G-~YGHVAvVe~V~~DGsI~Is 125 (163)
T 2jrn_A 95 EAGSILQSTAG-GYGHVAYVENVNSDGSVEVS 125 (163)
T ss_dssp CTTEEEEECTT-TTCEEEEEEECSSSSCEEEE
T ss_pred CCCEEEEeCCC-CCCEEEEEEEECCCCcEEEE
Confidence 57888877766 46999988888777788885
No 62
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=23.26 E-value=53 Score=22.07 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=20.5
Q ss_pred CeeeecccccccceeeeeceEEEEe
Q psy2756 1 MTIVKHNYNGAFKRFVQTGRVVRIS 25 (112)
Q Consensus 1 ~~~~~~~~~m~f~rfVEvGRVv~i~ 25 (112)
|++-.-+....|.+.|.+|..+|++
T Consensus 3 m~i~r~~~~~~ys~av~~g~~lfvS 27 (124)
T 3gtz_A 3 LSIVRIDAEDRWSDVVIYNNTLWYT 27 (124)
T ss_dssp CSCEEEEECSSCEEEEEETTEEEEE
T ss_pred CceEEcCCCCCcCCEEEECCEEEEe
Confidence 5566666678899999999999997
No 63
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*
Probab=22.51 E-value=80 Score=25.44 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=28.3
Q ss_pred eeecCceeecceEEEecCCCChHHHHHHHHhcc
Q psy2756 58 ALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQ 90 (112)
Q Consensus 58 ~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a~ 90 (112)
.+|.-+.++.++.+.+.+.+.-++++++|+++.
T Consensus 232 RVPv~~~s~~dlt~~lek~~t~eei~~~lk~a~ 264 (332)
T 3pym_A 232 RVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAA 264 (332)
T ss_dssp EESCSSCEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred EcCCCCcEeeEEEEEECCcCCHHHHHHHHHHhc
Confidence 367778888999999999999999999998763
No 64
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Probab=22.50 E-value=72 Score=25.76 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=28.6
Q ss_pred eeecCceeecceEEEecCCCChHHHHHHHHhcc
Q psy2756 58 ALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQ 90 (112)
Q Consensus 58 ~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a~ 90 (112)
.+|.-+.++.++.+.+.+.++-++++++|+++.
T Consensus 245 RVPv~~gs~~dltv~lek~~t~eei~~~lk~a~ 277 (345)
T 2b4r_O 245 RVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAA 277 (345)
T ss_dssp ECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred EecccceEEEEEEEEECCCCCHHHHHHHHHHhh
Confidence 467778888999999999999999999998764
No 65
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}
Probab=22.37 E-value=79 Score=25.43 Aligned_cols=33 Identities=9% Similarity=0.158 Sum_probs=28.5
Q ss_pred eeecCceeecceEEEecC-CCChHHHHHHHHhcc
Q psy2756 58 ALRLNQLHLTKLKINFPF-NARTKVVRKAWKDGQ 90 (112)
Q Consensus 58 ~i~~k~l~LT~~~i~i~r-~a~t~~v~ka~~~a~ 90 (112)
.+|.-+.++.++.+.+.+ .++-++++++|+++.
T Consensus 233 RVPv~~~s~~dltv~lek~~~t~eei~~~lk~a~ 266 (342)
T 2ep7_A 233 RVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAA 266 (342)
T ss_dssp EESCSSCEEEEEEEEESSCCSCHHHHHHHHHHHH
T ss_pred EecccceEEEEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467778888999999999 999999999998774
No 66
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1
Probab=22.10 E-value=97 Score=24.18 Aligned_cols=33 Identities=6% Similarity=0.127 Sum_probs=27.7
Q ss_pred eeeecCceeecceEEEecCCCChHHHHHHHHhc
Q psy2756 57 SALRLNQLHLTKLKINFPFNARTKVVRKAWKDG 89 (112)
Q Consensus 57 q~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a 89 (112)
..+|..+.++.++.+.+.+..+.+.++++|+++
T Consensus 211 ~rVPv~~g~~~~~~v~l~~~~t~eei~~~~~~~ 243 (337)
T 1cf2_P 211 VIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDT 243 (337)
T ss_dssp EEESCCSCEEEEEEEEESSCCCHHHHHHHHHHS
T ss_pred EEcCccCeEEEEEEEEECCCCCHHHHHHHHHhC
Confidence 356778888888888888889999999999876
No 67
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=22.07 E-value=75 Score=22.01 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=23.1
Q ss_pred eeeeceEEEEecCCCCCc--eEEEEEeeeCCeEEEeCCC
Q psy2756 15 FVQTGRVVRISDGPYRGK--LSSIVDVINQTTVLVDGPE 51 (112)
Q Consensus 15 fVEvGRVv~i~~Gp~aGK--l~vIVdIiD~nRvLVDGP~ 51 (112)
-+|+|-.+.... | .|. .++|++| +.++|.||+-.
T Consensus 93 ~~~~G~~~~~~~-~-~G~~~~~~V~~v-~~~~v~vD~NH 128 (151)
T 2kr7_A 93 ELEKGMSVFGQT-E-DNQTIQAIIKDF-SATHVMVDYNH 128 (151)
T ss_dssp CCCTTCEEEEEE-T-TTEEEEEEEEEE-CSSEEEEEECC
T ss_pred CCccCCEEEEEC-C-CCCEEEEEEEEE-CCCEEEEECCC
Confidence 478898877653 2 233 4556665 77899999964
No 68
>1m1f_A KID toxin protein; toxin-antitoxin, plasmid maintenance, post segregational killing, DNA replication, mutational analysis, CCDB; 1.40A {Escherichia coli} SCOP: b.34.6.2 PDB: 2c06_A
Probab=22.00 E-value=54 Score=20.99 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=16.6
Q ss_pred eeceEEEEecCCCCC------ceEEEEEe
Q psy2756 17 QTGRVVRISDGPYRG------KLSSIVDV 39 (112)
Q Consensus 17 EvGRVv~i~~Gp~aG------Kl~vIVdI 39 (112)
+-|-|++++++|..| +-|+||.-
T Consensus 2 ~rGdI~~v~~~p~~g~E~~k~RP~lVvs~ 30 (110)
T 1m1f_A 2 ERGEIWLVSLDPTAGHEQQGTRPVLIVTP 30 (110)
T ss_dssp CTTEEEEEECCSCCTTSCCSEEEEEECSC
T ss_pred cccEEEEEECCCCCCcccCCcccEEEEec
Confidence 468899999987665 44777653
No 69
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=21.93 E-value=1.1e+02 Score=21.61 Aligned_cols=31 Identities=32% Similarity=0.336 Sum_probs=22.6
Q ss_pred eeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCC
Q psy2756 15 FVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE 51 (112)
Q Consensus 15 fVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~ 51 (112)
..|+|..+.+. | ..++|++| +..+|.||+-.
T Consensus 102 ~~~~G~~~~~~-~----~~~~V~~v-~~~~V~vD~NH 132 (157)
T 3pr9_A 102 KPIKGLTITID-G----IPGKIVSI-NSGRVLVDFNH 132 (157)
T ss_dssp CCCTTCEEEET-T----EEEEEEEE-ETTEEEEECSC
T ss_pred CcCCCcEEEec-C----CCeEEEEE-cCCEEEEECCC
Confidence 36789988763 3 35678886 56799999953
No 70
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*
Probab=21.61 E-value=86 Score=25.30 Aligned_cols=32 Identities=9% Similarity=0.112 Sum_probs=27.8
Q ss_pred eeecCceeecceEEEecCCCChHHHHHHHHhc
Q psy2756 58 ALRLNQLHLTKLKINFPFNARTKVVRKAWKDG 89 (112)
Q Consensus 58 ~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a 89 (112)
.+|.-+.++.++.+.+.+.+.-++++++|+++
T Consensus 234 RVPv~~~s~~dlt~~lek~~t~eei~~~lk~A 265 (335)
T 3doc_A 234 RVPTPNVSVVDLTFIAKRETTVEEVNNAIREA 265 (335)
T ss_dssp EESCSSCEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EeccccccceEEEEEECCCCCHHHHHHHHHHh
Confidence 35677888899999999999999999999876
No 71
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*
Probab=21.53 E-value=86 Score=25.41 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=27.8
Q ss_pred eeecCceeecceEEEecCCCChHHHHHHHHhcc
Q psy2756 58 ALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQ 90 (112)
Q Consensus 58 ~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a~ 90 (112)
.+|.-+.++.++.+.+.+.+.-++++++|+++.
T Consensus 238 RVPv~~~s~~dlt~~lek~~t~eei~~~lk~A~ 270 (346)
T 3h9e_O 238 RVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAA 270 (346)
T ss_dssp EESCSSCEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred EcccccceeEEEEEEECCcCCHHHHHHHHHHhc
Confidence 356677888889999999999999999998763
No 72
>3cp0_A Membrane protein implicated in regulation of MEMB protease activity; beta barrel, structural genomics, PSI-2; 1.65A {Corynebacterium glutamicum atcc 13032}
Probab=20.88 E-value=62 Score=20.01 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=19.6
Q ss_pred cCCCCCceEEEEEeeeC--CeEEEeCC
Q psy2756 26 DGPYRGKLSSIVDVINQ--TTVLVDGP 50 (112)
Q Consensus 26 ~Gp~aGKl~vIVdIiD~--nRvLVDGP 50 (112)
.-.+-|+.+.+++-++. .+|.++|-
T Consensus 21 ~~~liG~~~~v~~~i~~~~G~V~~~G~ 47 (82)
T 3cp0_A 21 PRALVGHRAEVLEDVGATSGQVRLDGS 47 (82)
T ss_dssp GGGGTTCEEEEEECBCSSCCEEEETTE
T ss_pred hhhcCCCEEEEEEEeCCCCEEEEECCE
Confidence 34577999999988753 78999986
No 73
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}
Probab=20.86 E-value=89 Score=25.36 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=27.9
Q ss_pred eeecCceeecceEEEecCCCChHHHHHHHHhc
Q psy2756 58 ALRLNQLHLTKLKINFPFNARTKVVRKAWKDG 89 (112)
Q Consensus 58 ~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a 89 (112)
.+|.-+.++.++.+.+.+.+.-++++++|+++
T Consensus 235 RVPv~~~s~~dlt~~lek~~t~eei~~~lk~A 266 (345)
T 4dib_A 235 RVPTPNVSLVDLVVDVKRDVTVEAINDAFKTV 266 (345)
T ss_dssp ECCCSSEEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EccCcccEEEEEEEEECCCCCHHHHHHHHHHh
Confidence 35677888899999999999999999999876
No 74
>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O
Probab=20.79 E-value=82 Score=25.45 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=28.1
Q ss_pred eeecCceeecceEEEecCCCChHHHHHHHHhcc
Q psy2756 58 ALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQ 90 (112)
Q Consensus 58 ~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a~ 90 (112)
.+|.-+.++.++.+.+.+.+.-++++++|+++.
T Consensus 236 RVPv~~~s~~dlt~~lek~~t~eei~~~lk~a~ 268 (337)
T 3v1y_O 236 RVPTVDVSVVDLTVRIEKAASYDAIKSAIKSAS 268 (337)
T ss_dssp ECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred EcCCCCcEEEEEEEEECCCCcHHHHHHHHHHhc
Confidence 356677888899999999999999999998763
No 75
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4
Probab=20.63 E-value=13 Score=27.52 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=22.3
Q ss_pred CCeEEE--eCCCCCC--cceeeecCceeecce
Q psy2756 42 QTTVLV--DGPETGV--PRSALRLNQLHLTKL 69 (112)
Q Consensus 42 ~nRvLV--DGP~tgV--~Rq~i~~k~l~LT~~ 69 (112)
.+|+.+ |||++|- -+|.|+|..|.||.-
T Consensus 80 p~r~~~Hpdsp~~G~~WM~~~VsF~klKlTNn 111 (184)
T 1xbr_A 80 PSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNK 111 (184)
T ss_dssp CCCCEECTTCSEEHHHHHHSCEECTTCEEESS
T ss_pred CcceEECCCCchhHHHHhhCCceecccccccc
Confidence 456777 7888775 489999999999974
No 76
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Probab=20.55 E-value=13 Score=27.62 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=21.2
Q ss_pred CCeEEE--eCCCCCC--cceeeecCceeecce
Q psy2756 42 QTTVLV--DGPETGV--PRSALRLNQLHLTKL 69 (112)
Q Consensus 42 ~nRvLV--DGP~tgV--~Rq~i~~k~l~LT~~ 69 (112)
.+|+.+ |||++|- -+|.|+|..|.||.-
T Consensus 83 p~r~~~Hpdsp~tG~~WM~~~VsF~klKLTNn 114 (193)
T 1h6f_A 83 PKRMYIHPDSPATGEQWMSKVVTFHKLKLTNN 114 (193)
T ss_dssp CCCCEECTTCSEEHHHHTTSCEECTTCCEECC
T ss_pred CcceEecCCCcccHHHHhhCCcceeeeeeecc
Confidence 345555 6888774 489999999999964
No 77
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*
Probab=20.04 E-value=1e+02 Score=24.91 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=28.3
Q ss_pred eeecCceeecceEEEecC-CCChHHHHHHHHhcc
Q psy2756 58 ALRLNQLHLTKLKINFPF-NARTKVVRKAWKDGQ 90 (112)
Q Consensus 58 ~i~~k~l~LT~~~i~i~r-~a~t~~v~ka~~~a~ 90 (112)
.+|.-+.++.++.+.+.+ .+.-++++++|+++.
T Consensus 236 RVPv~~~s~~dlt~~lek~~~t~eei~~~lk~As 269 (338)
T 3lvf_P 236 RVPVATGSLTELTVVLEKQDVTVEQVNEAMKNAS 269 (338)
T ss_dssp EESCSSCEEEEEEEEESSSSCCHHHHHHHHHHTC
T ss_pred EcCCCceEEEEEEEEEccCCCCHHHHHHHHHHhh
Confidence 367778888999999999 899999999998763
No 78
>1ub4_A MAZF protein; toxin, antidote, programmed cell death, post-segregation, AD module, structural genomics, PSI; 1.70A {Escherichia coli} SCOP: b.34.6.2 PDB: 3nfc_A
Probab=20.01 E-value=55 Score=21.14 Aligned_cols=25 Identities=12% Similarity=0.355 Sum_probs=16.8
Q ss_pred eeeeceEEEEecCCCCC------ceEEEEEe
Q psy2756 15 FVQTGRVVRISDGPYRG------KLSSIVDV 39 (112)
Q Consensus 15 fVEvGRVv~i~~Gp~aG------Kl~vIVdI 39 (112)
.++.|-|++++++|..| +-|+||.-
T Consensus 5 ~~~rGdI~~v~~~p~~g~E~~k~RP~lVvs~ 35 (110)
T 1ub4_A 5 VPDMGDLIWVDFDPTKGSEQAGHRPAVVLSP 35 (110)
T ss_dssp CCCTTEEEEEECCC-------CEEEEEECSC
T ss_pred ccccCeEEEEECCCCCCcccCCcCcEEEEec
Confidence 35679999999988765 45777753
No 79
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}
Probab=20.00 E-value=1e+02 Score=24.24 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=28.5
Q ss_pred eecCceeecceEEEecCCCChHHHHHHHHhc
Q psy2756 59 LRLNQLHLTKLKINFPFNARTKVVRKAWKDG 89 (112)
Q Consensus 59 i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a 89 (112)
+|.-+.++.++.+.+.+..+.+.++++|+++
T Consensus 220 VPv~~gh~~~l~v~l~~~~t~eei~~~l~~a 250 (343)
T 2yyy_A 220 VPTTLMHMHTLMVEVDGDVSRDDILEAIKKT 250 (343)
T ss_dssp ESCSSCEEEEEEEEEESCCCHHHHHHHHHHS
T ss_pred ecccceEEEEEEEEECCCCCHHHHHHHHHhC
Confidence 6888999999999999999999999999976
Done!