RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2756
         (112 letters)



>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
          solfataricus [TaxId: 2287]}
          Length = 96

 Score = 91.7 bits (228), Expect = 2e-26
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 15 FVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE--TGVPRSALRLNQLHLTKLKIN 72
           ++ GR+     G   G    IVD+I+   VLV GP+  TGV R  + +  L  T  KI+
Sbjct: 3  AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKID 62

Query: 73 FPFNARTKVVRKAWKDGQVEEKWSKS 98
              A  + V+K  ++  + E   + 
Sbjct: 63 IQKGASDEEVKKKLEESNLTEYMKEK 88


>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO
          reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 622

 Score = 28.5 bits (62), Expect = 0.16
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 4/36 (11%)

Query: 10 GAFKRFVQTGRVVRIS---DGPY-RGKLSSIVDVIN 41
          G FK  V+ GR V        P    +L  ++D I 
Sbjct: 12 GVFKARVENGRAVAFEPWDKDPAPSHQLPGVLDSIY 47


>d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase
          {Shewanella massilia [TaxId: 76854]}
          Length = 627

 Score = 26.2 bits (56), Expect = 0.98
 Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 4/36 (11%)

Query: 10 GAFKRFVQTGRVVRIS---DGPY-RGKLSSIVDVIN 41
          GAFK   + G +  +       Y    ++ I  ++ 
Sbjct: 13 GAFKMKRKNGVIAEVKPFDLDKYPTDMINGIRGMVY 48


>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 343

 Score = 24.1 bits (52), Expect = 5.5
 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 11/67 (16%)

Query: 5   KHNYNGAFKRFVQTGRVVRISD---------GPYRGKLSSIVDVINQTTVL--VDGPETG 53
           +  Y+  F   V     +++           G  R + +           L  +D  ++G
Sbjct: 249 QEAYDRDFLARVYGAPQLQVEKVRTNDRKELGEVRVQYTGRDSFKAFAKALGVMDDLKSG 308

Query: 54  VPRSALR 60
           VPR+  R
Sbjct: 309 VPRAGYR 315


>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG,
          C-terminal domain {Thermus thermophilus [TaxId: 274]}
          Length = 58

 Score = 22.2 bits (48), Expect = 8.4
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 7/44 (15%)

Query: 17 QTGRVVRISDGPYRGKLSSIVDVINQT----TVLVD--GPETGV 54
          + G  VR+  GP+    +  V  IN       V+V   G ET V
Sbjct: 6  REGDQVRVVSGPFAD-FTGTVTEINPERGKVKVMVTIFGRETPV 48


>d1ftra2 d.58.33.1 (A:149-296)
           Formylmethanofuran:tetrahydromethanopterin
           formyltransferase {Archaeon Methanopyrus kandleri
           [TaxId: 2320]}
          Length = 148

 Score = 23.1 bits (50), Expect = 8.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 21  VVRISDGPYRGKL 33
           VV+IS G + GKL
Sbjct: 125 VVKISAGNFGGKL 137


>d1m5ha2 d.58.33.1 (A:146-297)
           Formylmethanofuran:tetrahydromethanopterin
           formyltransferase {Archaeon Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 152

 Score = 23.1 bits (50), Expect = 8.7
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 11  AFKRFVQTGRVVRISDGPYRGKL 33
                 +   VV+I+ G Y GKL
Sbjct: 119 GILAATKIPGVVKITAGNYGGKL 141


>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein
          NusG, C-terminal domain {Aquifex aeolicus [TaxId:
          63363]}
          Length = 58

 Score = 21.9 bits (47), Expect = 9.6
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 17 QTGRVVRISDGPYRGKLSSIVDVINQT----TVLVD--GPETGV 54
          + G  VR+ +GP+    +  V+ ++      TV++   G  T V
Sbjct: 6  EKGDQVRVIEGPFMN-FTGTVEEVHPEKRKLTVMISIFGRMTPV 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0687    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 410,821
Number of extensions: 16305
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 13
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)