BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2757
         (61 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CG5|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase-
           Phosphopantetheinyl Transferase In Complex With
           Cytosolic Acyl Carrier Protein And Coenzyme A
          Length = 319

 Score = 25.4 bits (54), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 6   RHTPYFGQPDYRVYELNKRLQQRTESLWSSSPETKVDESMYDCMLLCDELP 56
           RH     Q D +  +    +    + + S+ P T  D S +DC    +E+P
Sbjct: 262 RHQDVPSQDDSKPTQRQFTILNFNDLMSSAVPMTPEDPSFWDCFCFTEEIP 312


>pdb|2BYD|A Chain A, Structure Of Aminoadipate-semialdehyde Dehydrogenase-
           Phosphopantetheinyl Transferase
 pdb|2C43|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase-
           Phosphopantetheinyl Transferase In Complex With Coenzyme
           A
          Length = 323

 Score = 25.4 bits (54), Expect = 9.3,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 6   RHTPYFGQPDYRVYELNKRLQQRTESLWSSSPETKVDESMYDCMLLCDELP 56
           RH     Q D +  +    +    + + S+ P T  D S +DC    +E+P
Sbjct: 262 RHQDVPSQDDSKPTQRQFTILNFNDLMSSAVPMTPEDPSFWDCFCFTEEIP 312


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,129,663
Number of Sequences: 62578
Number of extensions: 62405
Number of successful extensions: 115
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 9
length of query: 61
length of database: 14,973,337
effective HSP length: 32
effective length of query: 29
effective length of database: 12,970,841
effective search space: 376154389
effective search space used: 376154389
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)