BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2757
(61 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O55203|LDB2_MOUSE LIM domain-binding protein 2 OS=Mus musculus GN=Ldb2 PE=1 SV=2
Length = 373
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 26/32 (81%), Gaps = 3/32 (9%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
RRHTPY QP+YR+YE+NKRLQ RTE +LW
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50
>sp|O43679|LDB2_HUMAN LIM domain-binding protein 2 OS=Homo sapiens GN=LDB2 PE=1 SV=1
Length = 373
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 26/32 (81%), Gaps = 3/32 (9%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
RRHTPY QP+YR+YE+NKRLQ RTE +LW
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50
>sp|Q9W676|LDB2_CHICK LIM domain-binding protein 2 OS=Gallus gallus GN=LDB2 PE=2 SV=1
Length = 371
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 26/32 (81%), Gaps = 3/32 (9%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
RRHTPY QP+YR+YE+NKRLQ R+E +LW
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQARSEDSDNLW 50
>sp|Q1EQW7|LDB2_XENLA LIM domain-binding protein 2 OS=Xenopus laevis GN=ldb2 PE=2 SV=1
Length = 398
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 25/32 (78%), Gaps = 3/32 (9%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
RRH PY QP+YR+YE+NKRLQ RTE +LW
Sbjct: 19 RRHAPYMVQPEYRIYEMNKRLQTRTEDSDNLW 50
>sp|Q6NVL6|LDB1_XENTR LIM domain-binding protein 1 OS=Xenopus tropicalis GN=ldb1 PE=2
SV=1
Length = 373
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
G+ RHTPY Q DYR++ELNKRLQ TE +LW + T+ E D ML
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFED--DAML 68
>sp|P70060|LDB1_XENLA LIM domain-binding protein 1 OS=Xenopus laevis GN=ldb1 PE=1 SV=2
Length = 375
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
G+ RHTPY Q DYR++ELNKRLQ TE +LW + T+ E D ML
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFED--DAML 68
>sp|P70662|LDB1_MOUSE LIM domain-binding protein 1 OS=Mus musculus GN=Ldb1 PE=1 SV=2
Length = 411
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 25/34 (73%), Gaps = 3/34 (8%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
G+ RHTPY Q DYR++ELNKRLQ TE +LW
Sbjct: 56 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLW 89
>sp|Q86U70|LDB1_HUMAN LIM domain-binding protein 1 OS=Homo sapiens GN=LDB1 PE=1 SV=2
Length = 411
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 25/34 (73%), Gaps = 3/34 (8%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
G+ RHTPY Q DYR++ELNKRLQ TE +LW
Sbjct: 56 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLW 89
>sp|O42252|LDB1_CHICK LIM domain-binding protein 1 OS=Gallus gallus GN=LDB1 PE=2 SV=1
Length = 411
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 25/34 (73%), Gaps = 3/34 (8%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
G+ RHTPY Q DYR++ELNKRLQ TE +LW
Sbjct: 56 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLW 89
>sp|O73715|LDB1A_DANRE LIM domain-binding protein 1-A OS=Danio rerio GN=ldb1a PE=2 SV=1
Length = 374
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE----SLWSSSPETKVDESMYDCML 50
G+ RHTPY Q DYR++ELNKRLQ TE +LW + T+ E D ML
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEQDCDNLWWDAFTTEFFED--DAML 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,346,937
Number of Sequences: 539616
Number of extensions: 780476
Number of successful extensions: 1597
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1587
Number of HSP's gapped (non-prelim): 10
length of query: 61
length of database: 191,569,459
effective HSP length: 34
effective length of query: 27
effective length of database: 173,222,515
effective search space: 4677007905
effective search space used: 4677007905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)