Query psy2757
Match_columns 61
No_of_seqs 30 out of 32
Neff 2.4
Searched_HMMs 46136
Date Sat Aug 17 00:25:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2181|consensus 99.9 2.6E-27 5.7E-32 181.9 3.4 55 2-56 38-96 (415)
2 PF01803 LIM_bind: LIM-domain 98.3 1.9E-07 4.2E-12 64.2 1.4 42 16-57 2-48 (240)
3 PF02755 RPEL: RPEL repeat; I 38.9 18 0.0004 18.5 1.0 10 21-30 3-12 (26)
4 PF07989 Microtub_assoc: Micro 34.0 32 0.0007 20.9 1.7 17 15-31 20-36 (75)
5 smart00707 RPEL Repeat in Dros 33.6 24 0.00053 18.3 0.9 11 20-30 2-12 (26)
6 PF15136 UPF0449: Uncharacteri 29.7 33 0.00071 22.5 1.2 11 18-28 62-72 (97)
7 COG1565 Uncharacterized conser 24.0 16 0.00035 28.7 -1.1 48 7-55 103-158 (370)
8 PF09955 DUF2189: Predicted in 22.3 45 0.00098 21.6 0.9 22 18-39 20-41 (128)
9 PF15106 TMEM156: TMEM156 prot 22.1 50 0.0011 24.8 1.2 14 16-29 195-208 (226)
10 COG1150 HdrC Heterodisulfide r 21.3 46 0.001 24.1 0.8 33 1-34 51-84 (195)
11 PF11788 MRP-L46: 39S mitochon 21.1 67 0.0015 19.9 1.5 23 8-30 16-38 (111)
12 PF04667 Endosulfine: cAMP-reg 20.9 42 0.00091 21.1 0.5 8 21-28 28-35 (86)
No 1
>KOG2181|consensus
Probab=99.93 E-value=2.6e-27 Score=181.86 Aligned_cols=55 Identities=31% Similarity=0.452 Sum_probs=52.4
Q ss_pred CcccCCCCCCCCCchhHhHHHHHHHhcccC---ccccCcccccccccCc-eeeeeccCC
Q psy2757 2 VGVRRHTPYFGQPDYRVYELNKRLQQRTES---LWSSSPETKVDESMYD-CMLLCDELP 56 (61)
Q Consensus 2 ~~~~rh~py~~qpeyRI~elNkRLq~rte~---lWwDaF~teFFEdda~-~~l~c~Edp 56 (61)
+|++||+||++|+||||||||||||+|+|. +|||||+||||||||+ +++||+||-
T Consensus 38 pg~~rh~~y~s~~e~Ri~emNkRLq~~se~sdN~WWDaFstEFFeDDa~Lt~~fclEdg 96 (415)
T KOG2181|consen 38 PGFQRHGNYVSPLEFRIHEMNKRLQIFSEVSDNQWWDAFSTEFFEDDAKLTFVFCLEDG 96 (415)
T ss_pred CcccccCCCcCcchhhHHHHHHHHHHhcccchhhhHHhhhhhhhcCCceEEEEEEecCC
Confidence 589999999999999999999999999884 9999999999999999 999999984
No 2
>PF01803 LIM_bind: LIM-domain binding protein; InterPro: IPR002691 The LIM-domain binding protein, binds to the LIM domain IPR001781 from INTERPRO of LIM homeodomain proteins which are transcriptional regulators of development. Nuclear LIM interactor (NLI) / LIM domain-binding protein 1 (LDB1) P70662 from SWISSPROT is located in the nuclei of neuronal cells during development, it is co-expressed with Isl1 in early motor neuron differentiation and has a suggested role in the Isl1 dependent development of motor neurons []. It is suggested that these proteins act synergistically to enhance transcriptional efficiency by acting as co-factors for LIM homeodomain and Otx class transcription factors both of which have essential roles in development []. The Drosophila melanogaster protein Chip O18353 from SWISSPROT is required for segmentation and activity of a remote wing margin enhancer []. Chip is a ubiquitous chromosomal factor required for normal expression of diverse genes at many stages of development []. It is suggested that Chip cooperates with different LIM domain proteins and other factors to structurally support remote enhancer-promoter interactions [].; GO: 0003712 transcription cofactor activity, 0005634 nucleus
Probab=98.33 E-value=1.9e-07 Score=64.20 Aligned_cols=42 Identities=14% Similarity=0.034 Sum_probs=35.7
Q ss_pred hhHhHHHHHHHhcccC----ccccCcccccccccCc-eeeeeccCCC
Q psy2757 16 YRVYELNKRLQQRTES----LWSSSPETKVDESMYD-CMLLCDELPD 57 (61)
Q Consensus 16 yRI~elNkRLq~rte~----lWwDaF~teFFEdda~-~~l~c~Edp~ 57 (61)
+||+++|++|+++.++ .||+.|+.+||.++|. ...++.++-.
T Consensus 2 lRl~~~~~~l~~~~~~~~~~~yW~~fv~~fF~~~a~lr~~~~~~~~~ 48 (240)
T PF01803_consen 2 LRLLEFIERLSNFSPNLNDIEYWQKFVHEFFSPDAVLRISLWNEDGN 48 (240)
T ss_pred chHHHHHHHHHhhcCCCCcHHHHHHHHHHHcCCCeeEEEEEEcCCCC
Confidence 6999999999999332 9999999999999999 7777776653
No 3
>PF02755 RPEL: RPEL repeat; InterPro: IPR004018 The RPEL repeat is named after four conserved amino acids it contains. The function of the RPEL repeat is unknown however it might be a DNA binding repeat based on the observation that Q9VZY2 from SWISSPROT contains a SAP domain that is also implicated in DNA binding.; PDB: 2YJE_M 2V52_M 2YJF_M 2V51_E.
Probab=38.94 E-value=18 Score=18.46 Aligned_cols=10 Identities=40% Similarity=0.730 Sum_probs=6.5
Q ss_pred HHHHHHhccc
Q psy2757 21 LNKRLQQRTE 30 (61)
Q Consensus 21 lNkRLq~rte 30 (61)
|+++|++|..
T Consensus 3 L~~kl~~RP~ 12 (26)
T PF02755_consen 3 LERKLSQRPT 12 (26)
T ss_dssp HHHHHHT---
T ss_pred HHHHHhcCCC
Confidence 8999999965
No 4
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=33.97 E-value=32 Score=20.92 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=14.1
Q ss_pred chhHhHHHHHHHhcccC
Q psy2757 15 DYRVYELNKRLQQRTES 31 (61)
Q Consensus 15 eyRI~elNkRLq~rte~ 31 (61)
-.|||-|..||++.+++
T Consensus 20 KLrI~fLee~l~~~~~~ 36 (75)
T PF07989_consen 20 KLRIYFLEERLQKLGPE 36 (75)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 36999999999987664
No 5
>smart00707 RPEL Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2.
Probab=33.64 E-value=24 Score=18.26 Aligned_cols=11 Identities=45% Similarity=0.694 Sum_probs=9.0
Q ss_pred HHHHHHHhccc
Q psy2757 20 ELNKRLQQRTE 30 (61)
Q Consensus 20 elNkRLq~rte 30 (61)
-||++|++|..
T Consensus 2 ~L~~kl~~RP~ 12 (26)
T smart00707 2 VLNRKLSQRPT 12 (26)
T ss_pred hHHHHHHcCCC
Confidence 38999999965
No 6
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=29.66 E-value=33 Score=22.50 Aligned_cols=11 Identities=45% Similarity=0.579 Sum_probs=8.7
Q ss_pred HhHHHHHHHhc
Q psy2757 18 VYELNKRLQQR 28 (61)
Q Consensus 18 I~elNkRLq~r 28 (61)
-.+||.|||+=
T Consensus 62 Yv~~NerLqqa 72 (97)
T PF15136_consen 62 YVAMNERLQQA 72 (97)
T ss_pred HHHHHHHHHHH
Confidence 46899999864
No 7
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=24.00 E-value=16 Score=28.71 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=32.4
Q ss_pred CCCCCCCCchhHhHHHHHHHhccc--------CccccCcccccccccCceeeeeccC
Q psy2757 7 HTPYFGQPDYRVYELNKRLQQRTE--------SLWSSSPETKVDESMYDCMLLCDEL 55 (61)
Q Consensus 7 h~py~~qpeyRI~elNkRLq~rte--------~lWwDaF~teFFEdda~~~l~c~Ed 55 (61)
++..+.+..|-|.|.+++|++|-- -.=|.++..++++. .+.++||-|.
T Consensus 103 ~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~~~~~~~~~~e~~p~~-~~~i~~~NEl 158 (370)
T COG1565 103 YPELYEALSYYIIEPSPELRARQKETLKATEDLIRWVEWVEDLPKK-FPGIVVSNEL 158 (370)
T ss_pred CHHHHhcceEEEEecCHHHHHHHHHHHhccccchhHHHHHHhcccc-CceEEEechh
Confidence 455778999999999999977632 23455555555555 4566666664
No 8
>PF09955 DUF2189: Predicted integral membrane protein (DUF2189); InterPro: IPR018692 This family includes several hypothetical prokaryotic proteins. Some are described as putative cytochrome c oxidases.
Probab=22.31 E-value=45 Score=21.57 Aligned_cols=22 Identities=23% Similarity=0.573 Sum_probs=17.0
Q ss_pred HhHHHHHHHhcccCccccCccc
Q psy2757 18 VYELNKRLQQRTESLWSSSPET 39 (61)
Q Consensus 18 I~elNkRLq~rte~lWwDaF~t 39 (61)
+||+.||+++-..--|.+++..
T Consensus 20 lYeiSrr~e~G~~~~~~~~l~~ 41 (128)
T PF09955_consen 20 LYEISRRRERGEPPSWGDSLSA 41 (128)
T ss_pred HHHHHHHHhCCCCCCHHHHHhh
Confidence 6999999987655578777765
No 9
>PF15106 TMEM156: TMEM156 protein family
Probab=22.08 E-value=50 Score=24.79 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=12.5
Q ss_pred hhHhHHHHHHHhcc
Q psy2757 16 YRVYELNKRLQQRT 29 (61)
Q Consensus 16 yRI~elNkRLq~rt 29 (61)
|+|+|=|||.|.|-
T Consensus 195 ~KIle~hrrvqkwq 208 (226)
T PF15106_consen 195 YKILEGHRRVQKWQ 208 (226)
T ss_pred HHHHHhhhhHhHHh
Confidence 89999999999874
No 10
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=21.31 E-value=46 Score=24.14 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=24.1
Q ss_pred CCcccCCCCCCCCCchhHhHHHHH-HHhcccCccc
Q psy2757 1 CVGVRRHTPYFGQPDYRVYELNKR-LQQRTESLWS 34 (61)
Q Consensus 1 ~~~~~rh~py~~qpeyRI~elNkR-Lq~rte~lWw 34 (61)
||+ +|++.|..--=.|..-+|-+ ++..++++|-
T Consensus 51 CPs-~r~t~y~pR~ii~~~~~g~~d~il~~~~lW~ 84 (195)
T COG1150 51 CPS-GRFTDYSPRKIIRKARLGLVDLILSSESLWA 84 (195)
T ss_pred CCC-cccCCCCHHHHHHHHHcccHHHHhcCCccee
Confidence 444 45588877666677777878 8888888884
No 11
>PF11788 MRP-L46: 39S mitochondrial ribosomal protein L46 ; InterPro: IPR021757 This is the L46 subunit of the mammalian mitochondrial ribosome, conserved from plants and fungi.
Probab=21.13 E-value=67 Score=19.87 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=15.9
Q ss_pred CCCCCCCchhHhHHHHHHHhccc
Q psy2757 8 TPYFGQPDYRVYELNKRLQQRTE 30 (61)
Q Consensus 8 ~py~~qpeyRI~elNkRLq~rte 30 (61)
+|-+++-|-+.|+-+++|++|-+
T Consensus 16 t~~~t~~E~~y~~yq~~L~~rl~ 38 (111)
T PF11788_consen 16 TPEPTPFEKAYYEYQKELLRRLE 38 (111)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Confidence 46677788999666666666533
No 12
>PF04667 Endosulfine: cAMP-regulated phosphoprotein/endosulfine conserved region; InterPro: IPR006760 This endosulphine family includes cAMP-regulated phosphoprotein 19 (ARPP-19), alpha endosulphine and protein Igo1. No function has yet been assigned to ARPP-19 []. Endosulphine is the endogenous ligand for the ATP-dependent potassium channels which occupy a key position in the control of insulin release from the pancreatic beta cell by coupling cell polarity to metabolism []. Igo1 is required for initiation of G0 program. In the absence of stimulatory signals, cells may enter into a reversible quiescence (or G0) state that is typically characterised by low metabolic activity, including low rates of protein synthesis and transcription. Igo proteins associate with the mRNA decapping activator Dhh1, sheltering newly expressed mRNAs from degradation via the 5'-3' mRNA decay pathway, and thereby enabling their proper translation during initiation of the G0 program [].
Probab=20.94 E-value=42 Score=21.10 Aligned_cols=8 Identities=63% Similarity=0.978 Sum_probs=6.8
Q ss_pred HHHHHHhc
Q psy2757 21 LNKRLQQR 28 (61)
Q Consensus 21 lNkRLq~r 28 (61)
|.||||+|
T Consensus 28 L~kkl~~r 35 (86)
T PF04667_consen 28 LQKKLQKR 35 (86)
T ss_pred hhhhhccc
Confidence 88999886
Done!