Query psy2757
Match_columns 61
No_of_seqs 30 out of 32
Neff 2.4
Searched_HMMs 29240
Date Sat Aug 17 00:25:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z5k_B Nuclear RNA export fact 79.7 0.55 1.9E-05 24.2 0.7 14 4-17 17-30 (30)
2 1loi_A Cyclic 3',5'-AMP specif 30.0 6.8 0.00023 20.0 -0.8 7 32-38 18-24 (26)
3 3tox_A Short chain dehydrogena 23.4 17 0.00059 23.7 0.0 19 20-38 259-277 (280)
4 3pp5_A BRK1, protein brick1; t 22.5 39 0.0013 20.3 1.5 14 14-27 43-56 (73)
5 3fc7_A HTR-like protein, senso 20.7 50 0.0017 16.6 1.5 35 21-55 4-38 (125)
6 2xrh_A Protein HP0721; unknown 20.4 27 0.00094 22.2 0.5 17 13-30 31-47 (100)
7 3u59_A Tropomyosin beta chain; 17.8 54 0.0018 19.4 1.4 11 17-27 87-97 (101)
8 1ghh_A DINI, DNA-damage-induci 16.9 50 0.0017 19.8 1.1 12 19-30 23-34 (81)
9 3aab_A Putative uncharacterize 15.8 43 0.0015 19.7 0.6 36 20-58 7-45 (123)
10 1k8k_E P21, ARP2/3 complex 21 15.6 57 0.002 22.4 1.3 26 19-44 138-170 (178)
No 1
>2z5k_B Nuclear RNA export factor 1; nuclear transport, importin, exportin, karyopherin, nucleocytoplasmic, TAP, NLS; 2.60A {Homo sapiens} PDB: 2z5m_B
Probab=79.75 E-value=0.55 Score=24.21 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=11.0
Q ss_pred ccCCCCCCCCCchh
Q psy2757 4 VRRHTPYFGQPDYR 17 (61)
Q Consensus 4 ~~rh~py~~qpeyR 17 (61)
-.||+||..++.-|
T Consensus 17 ~~RytPY~~~~~~r 30 (30)
T 2z5k_B 17 RVRYNPYTTRPNRR 30 (30)
T ss_pred cccccCccccccCC
Confidence 36999999988643
No 2
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=29.97 E-value=6.8 Score=19.97 Aligned_cols=7 Identities=14% Similarity=0.221 Sum_probs=5.7
Q ss_pred ccccCcc
Q psy2757 32 LWSSSPE 38 (61)
Q Consensus 32 lWwDaF~ 38 (61)
.|||.|-
T Consensus 18 gwwdqfk 24 (26)
T 1loi_A 18 GWWDQFK 24 (26)
T ss_dssp GGHHHHT
T ss_pred hhHHHhc
Confidence 6999884
No 3
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=23.36 E-value=17 Score=23.67 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHhcccCccccCcc
Q psy2757 20 ELNKRLQQRTESLWSSSPE 38 (61)
Q Consensus 20 elNkRLq~rte~lWwDaF~ 38 (61)
-+|.++++++.+.||+-+-
T Consensus 259 a~~~~~~~~~~~~~~~~~~ 277 (280)
T 3tox_A 259 AENLYFQSHHHHHHWSHPQ 277 (280)
T ss_dssp -------------------
T ss_pred ccchHHHhhhccccccccc
Confidence 3678899999999998653
No 4
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=22.49 E-value=39 Score=20.29 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=11.7
Q ss_pred CchhHhHHHHHHHh
Q psy2757 14 PDYRVYELNKRLQQ 27 (61)
Q Consensus 14 peyRI~elNkRLq~ 27 (61)
-+.|+-+||.|||.
T Consensus 43 ce~KLa~ln~kL~~ 56 (73)
T 3pp5_A 43 TRNKLSDLNEKLTI 56 (73)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36789999999985
No 5
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=20.69 E-value=50 Score=16.55 Aligned_cols=35 Identities=9% Similarity=0.011 Sum_probs=8.7
Q ss_pred HHHHHHhcccCccccCcccccccccCceeeeeccC
Q psy2757 21 LNKRLQQRTESLWSSSPETKVDESMYDCMLLCDEL 55 (61)
Q Consensus 21 lNkRLq~rte~lWwDaF~teFFEdda~~~l~c~Ed 55 (61)
|..||++..+.+=........++...+.+++.+.+
T Consensus 4 la~~i~~~~~~~~~~~~~~~i~~~~~~~i~~~d~~ 38 (125)
T 3fc7_A 4 LANRIENVVSQERTRKKFESLVSDSPDGIVHLTTN 38 (125)
T ss_dssp ----------------------CCSCCEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 34444443332215555566777777777666654
No 6
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=20.38 E-value=27 Score=22.21 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=12.7
Q ss_pred CCchhHhHHHHHHHhccc
Q psy2757 13 QPDYRVYELNKRLQQRTE 30 (61)
Q Consensus 13 qpeyRI~elNkRLq~rte 30 (61)
.|+|++ ||+||++.-++
T Consensus 31 ~~dY~m-Ev~KR~~~M~~ 47 (100)
T 2xrh_A 31 IVDYTK-ELKKRMEKMPE 47 (100)
T ss_dssp HHHHHH-HHHHHHHHSCH
T ss_pred hHHHHH-HHHHHHHhCCH
Confidence 367775 99999976554
No 7
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=17.83 E-value=54 Score=19.40 Aligned_cols=11 Identities=45% Similarity=0.634 Sum_probs=8.6
Q ss_pred hHhHHHHHHHh
Q psy2757 17 RVYELNKRLQQ 27 (61)
Q Consensus 17 RI~elNkRLq~ 27 (61)
-|--||||+|.
T Consensus 87 evasLnRriql 97 (101)
T 3u59_A 87 EVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35679999985
No 8
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=16.91 E-value=50 Score=19.79 Aligned_cols=12 Identities=33% Similarity=0.346 Sum_probs=9.6
Q ss_pred hHHHHHHHhccc
Q psy2757 19 YELNKRLQQRTE 30 (61)
Q Consensus 19 ~elNkRLq~rte 30 (61)
-||.|||+++=+
T Consensus 23 ~EL~kRl~~~fp 34 (81)
T 1ghh_A 23 GELSRRIQYAFP 34 (81)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHhhCC
Confidence 589999988744
No 9
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=15.83 E-value=43 Score=19.74 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=19.2
Q ss_pred HHHHHHHhcccC---ccccCcccccccccCceeeeeccCCCC
Q psy2757 20 ELNKRLQQRTES---LWSSSPETKVDESMYDCMLLCDELPDY 58 (61)
Q Consensus 20 elNkRLq~rte~---lWwDaF~teFFEdda~~~l~c~Edp~~ 58 (61)
||.|.+.+...+ .|+ +..+.+|++ +...+..+.||.
T Consensus 7 em~~~~~~~~~~~~~~~~--P~~di~e~~-~~~~v~~~lPG~ 45 (123)
T 3aab_A 7 ELQKRSEELSRGFYELVY--PPVDMYEEG-GYLVVVADLAGF 45 (123)
T ss_dssp -------CCCHHHHHHHC--SCEEEEEET-TEEEEEEECCSC
T ss_pred HHHHHHHHHhhhccccCC--CcEEEEEcC-CEEEEEEECCCC
Confidence 555555443322 343 667777763 588889999985
No 10
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=15.63 E-value=57 Score=22.45 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=19.6
Q ss_pred hHHHHHHHhc-------ccCccccCcccccccc
Q psy2757 19 YELNKRLQQR-------TESLWSSSPETKVDES 44 (61)
Q Consensus 19 ~elNkRLq~r-------te~lWwDaF~teFFEd 44 (61)
.|+..||-+| ..+-||=+|+-.=|=+
T Consensus 138 qEl~~RL~ervf~~~~~~psKwWl~FaKRkFM~ 170 (178)
T 1k8k_E 138 QETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170 (178)
T ss_dssp HHHHHHHHHHHBCSSSSCBCHHHHTTTTCCGGG
T ss_pred HHHHHHHHHHHhCCCCCCCCccceeehhhhhhc
Confidence 3888999877 2259999999866654
Done!