Query psy2757
Match_columns 61
No_of_seqs 30 out of 32
Neff 2.4
Searched_HMMs 13730
Date Sat Aug 17 00:25:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2757.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2757hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k8ke_ a.148.1.1 (E:) Arp2/3 28.3 10 0.00075 24.5 1.3 26 19-44 137-169 (174)
2 d1ip9a_ d.15.2.2 (A:) Bud emer 21.6 15 0.0011 20.0 0.9 40 13-55 29-69 (85)
3 d1sgja_ c.1.12.5 (A:) Citrate 21.5 18 0.0013 22.1 1.5 18 39-56 20-37 (231)
4 d1wmha_ d.15.2.2 (A:) Protein 18.6 14 0.001 21.5 0.4 9 15-23 65-73 (83)
5 d1w7ja1 b.34.3.1 (A:5-62) Myos 18.3 27 0.0019 18.4 1.5 27 30-56 15-41 (58)
6 d1u5ha_ c.1.12.5 (A:) Citrate 17.3 23 0.0017 21.9 1.3 13 44-56 26-38 (223)
7 d2foka4 c.52.1.12 (A:387-579) 17.2 21 0.0015 23.5 1.0 15 26-40 107-125 (193)
8 d1w2ya_ a.204.1.1 (A:) Type II 17.1 26 0.0019 22.3 1.5 20 17-36 9-28 (229)
9 d1ghha_ d.57.1.1 (A:) DNA dama 16.7 24 0.0017 19.9 1.1 13 18-30 22-34 (81)
10 d1d6ga_ g.33.1.1 (A:) Cholecys 15.3 20 0.0015 19.0 0.4 10 48-57 25-34 (47)
No 1
>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=28.29 E-value=10 Score=24.52 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=19.8
Q ss_pred hHHHHHHHhcc-------cCccccCcccccccc
Q psy2757 19 YELNKRLQQRT-------ESLWSSSPETKVDES 44 (61)
Q Consensus 19 ~elNkRLq~rt-------e~lWwDaF~teFFEd 44 (61)
.||..||-+|- .+-||=+|+-.=|=+
T Consensus 137 qEl~~RL~ervy~~~~~~psKwWl~FaKRkFM~ 169 (174)
T d1k8ke_ 137 QETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 169 (174)
T ss_dssp HHHHHHHHHHHBCSSSSCBCHHHHTTTTCCGGG
T ss_pred HHHHHHHHHHHcCCCCCCCCceeeeeecccccc
Confidence 48899998772 249999999876654
No 2
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.56 E-value=15 Score=19.95 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=28.5
Q ss_pred CCchhHhHHHHHHHhcccCccccCcccccccccCc-eeeeeccC
Q psy2757 13 QPDYRVYELNKRLQQRTESLWSSSPETKVDESMYD-CMLLCDEL 55 (61)
Q Consensus 13 qpeyRI~elNkRLq~rte~lWwDaF~teFFEdda~-~~l~c~Ed 55 (61)
+|+-.+-+|-.++..|=.. +.|.=++-|+|-+ +++.|++|
T Consensus 29 ~~~it~~dL~~kI~~rf~~---~~~~lkY~Dedgd~v~i~sD~D 69 (85)
T d1ip9a_ 29 KGDTTYKELRSKIAPRIDT---DNFKLQTKLFDGSGEEIKTDSQ 69 (85)
T ss_dssp CSCCCHHHHHHHHHHHHTS---SCEEEEECCSSSCCSCCCSHHH
T ss_pred CCCCCHHHHHHHHHHHhCC---CceEEEEEcCCCCEEEEeCHHH
Confidence 5566677777777776432 4677788888777 78888775
No 3
>d1sgja_ c.1.12.5 (A:) Citrate lyase, beta subunit {Deinococcus radiodurans [TaxId: 1299]}
Probab=21.51 E-value=18 Score=22.13 Aligned_cols=18 Identities=22% Similarity=0.146 Sum_probs=14.2
Q ss_pred cccccccCceeeeeccCC
Q psy2757 39 TKVDESMYDCMLLCDELP 56 (61)
Q Consensus 39 teFFEdda~~~l~c~Edp 56 (61)
.|-.+..||++++|+||-
T Consensus 20 ~Ka~~~~aD~vilDLEDa 37 (231)
T d1sgja_ 20 AKLPRSAPDAVVIDLEDA 37 (231)
T ss_dssp HHTTTTCCSEEEEESSTT
T ss_pred HHhhhcCCCEEEEEccCC
Confidence 345667889999999983
No 4
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.57 E-value=14 Score=21.49 Aligned_cols=9 Identities=67% Similarity=1.246 Sum_probs=7.5
Q ss_pred chhHhHHHH
Q psy2757 15 DYRVYELNK 23 (61)
Q Consensus 15 eyRI~elNk 23 (61)
.+|+||+||
T Consensus 65 A~RLye~n~ 73 (83)
T d1wmha_ 65 AFRLYELNK 73 (83)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHccC
Confidence 379999997
No 5
>d1w7ja1 b.34.3.1 (A:5-62) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=18.32 E-value=27 Score=18.41 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=22.4
Q ss_pred cCccccCcccccccccCceeeeeccCC
Q psy2757 30 ESLWSSSPETKVDESMYDCMLLCDELP 56 (61)
Q Consensus 30 e~lWwDaF~teFFEdda~~~l~c~Edp 56 (61)
+..|=.|-+++=|.+..+.+.|++||-
T Consensus 15 e~vW~~AEl~~dyk~g~k~L~l~lEdg 41 (58)
T d1w7ja1 15 EEVWKSAELLKDYKPGDKVLQLRLEEG 41 (58)
T ss_dssp TTEEEEEEESSCCCTTCSEEEEECSSS
T ss_pred cccEeeeEEEEEeeCCCeEEEEEecCC
Confidence 458999999998877777899999874
No 6
>d1u5ha_ c.1.12.5 (A:) Citrate lyase, beta subunit {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.31 E-value=23 Score=21.87 Aligned_cols=13 Identities=23% Similarity=0.056 Sum_probs=10.8
Q ss_pred ccCceeeeeccCC
Q psy2757 44 SMYDCMLLCDELP 56 (61)
Q Consensus 44 dda~~~l~c~Edp 56 (61)
..||+++|++||-
T Consensus 26 ~~AD~vilDLEDa 38 (223)
T d1u5ha_ 26 AAADVVILDLEDG 38 (223)
T ss_dssp HHCSEEEEESSTT
T ss_pred CCCCEEEEecccC
Confidence 4578999999984
No 7
>d2foka4 c.52.1.12 (A:387-579) Restriction endonuclease FokI, C-terminal (catalytic) domain {Flavobacterium okeanokoites [TaxId: 244]}
Probab=17.22 E-value=21 Score=23.53 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=10.1
Q ss_pred Hhccc----CccccCcccc
Q psy2757 26 QQRTE----SLWSSSPETK 40 (61)
Q Consensus 26 q~rte----~lWwDaF~te 40 (61)
|+|.+ ..||+.|...
T Consensus 107 ~~R~e~~np~~WWe~fp~~ 125 (193)
T d2foka4 107 QTRNKHINPNEWWKVYPSS 125 (193)
T ss_dssp HHCCTTTCTTCGGGGSCTT
T ss_pred cccccccCchhhhhhcccc
Confidence 44555 3899998754
No 8
>d1w2ya_ a.204.1.1 (A:) Type II deoxyuridine triphosphatase {Campylobacter jejuni [TaxId: 197]}
Probab=17.15 E-value=26 Score=22.28 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=17.2
Q ss_pred hHhHHHHHHHhcccCccccC
Q psy2757 17 RVYELNKRLQQRTESLWSSS 36 (61)
Q Consensus 17 RI~elNkRLq~rte~lWwDa 36 (61)
+|++|-++|..|....||..
T Consensus 9 ~~~~lQ~~ln~~i~~~~~~~ 28 (229)
T d1w2ya_ 9 NMLKLQQKLNDETNGLNWEN 28 (229)
T ss_dssp HHHHHHHHHHHHHHCTTGGG
T ss_pred HHHHHHHHHHHHhhhhcccc
Confidence 58999999999988888864
No 9
>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
Probab=16.73 E-value=24 Score=19.94 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=10.0
Q ss_pred HhHHHHHHHhccc
Q psy2757 18 VYELNKRLQQRTE 30 (61)
Q Consensus 18 I~elNkRLq~rte 30 (61)
--||.|||+++=+
T Consensus 22 ~~EL~kRl~~~fp 34 (81)
T d1ghha_ 22 AGELSRRIQYAFP 34 (81)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHhhCC
Confidence 3699999988743
No 10
>d1d6ga_ g.33.1.1 (A:) Cholecystokinin A receptor, N-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.29 E-value=20 Score=19.00 Aligned_cols=10 Identities=30% Similarity=0.610 Sum_probs=7.6
Q ss_pred eeeeeccCCC
Q psy2757 48 CMLLCDELPD 57 (61)
Q Consensus 48 ~~l~c~Edp~ 57 (61)
-++||+++|-
T Consensus 25 eT~~Cld~P~ 34 (47)
T d1d6ga_ 25 ETLFCLDQPR 34 (47)
T ss_dssp SCCBSCCCCS
T ss_pred ceEEEcCCCC
Confidence 3689998874
Done!