Your job contains 1 sequence.
>psy2757
CVGVRRHTPYFGQPDYRVYELNKRLQQRTESLWSSSPETKVDESMYDCMLLCDELPDYHE
A
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2757
(61 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|G5E9Y7 - symbol:LDB2 "LIM domain-binding protei... 120 6.1e-08 2
UNIPROTKB|O43679 - symbol:LDB2 "LIM domain-binding protei... 120 6.3e-08 2
MGI|MGI:894670 - symbol:Ldb2 "LIM domain binding 2" speci... 120 6.3e-08 2
UNIPROTKB|F1PRG9 - symbol:LDB2 "Uncharacterized protein" ... 120 7.9e-08 2
UNIPROTKB|F6R129 - symbol:LDB2 "Uncharacterized protein" ... 120 9.8e-08 2
UNIPROTKB|E7EX95 - symbol:LDB2 "LIM domain-binding protei... 120 1.4e-07 1
UNIPROTKB|E9PGU0 - symbol:LDB2 "LIM domain-binding protei... 120 1.4e-07 1
UNIPROTKB|F1NGI1 - symbol:LDB2 "LIM domain-binding protei... 115 2.1e-07 2
UNIPROTKB|Q9W676 - symbol:LDB2 "LIM domain-binding protei... 115 2.1e-07 2
UNIPROTKB|Q1EQW7 - symbol:ldb2 "LIM domain-binding protei... 114 3.4e-07 2
UNIPROTKB|E9PFI4 - symbol:LDB2 "LIM domain-binding protei... 120 6.4e-07 1
ZFIN|ZDB-GENE-990415-136 - symbol:ldb2a "LIM-domain bindi... 119 1.5e-06 1
UNIPROTKB|F1NRA7 - symbol:LDB2 "LIM domain-binding protei... 115 2.5e-06 1
UNIPROTKB|F1NI08 - symbol:LDB1 "LIM domain-binding protei... 112 5.1e-06 1
UNIPROTKB|F1NI21 - symbol:LDB1 "LIM domain-binding protei... 112 6.4e-06 1
UNIPROTKB|F1NKP2 - symbol:LDB1 "LIM domain-binding protei... 112 6.5e-06 1
UNIPROTKB|F2Z5G6 - symbol:LDB1 "Uncharacterized protein" ... 112 6.6e-06 1
UNIPROTKB|Q6NVL6 - symbol:ldb1 "LIM domain-binding protei... 112 6.6e-06 1
UNIPROTKB|P70060 - symbol:ldb1 "LIM domain-binding protei... 112 6.7e-06 1
RGD|1310359 - symbol:Ldb1 "LIM domain binding 1" species:... 112 6.7e-06 1
ZFIN|ZDB-GENE-990415-138 - symbol:ldb1a "LIM-domain bindi... 112 6.7e-06 1
UNIPROTKB|F1NI09 - symbol:LDB1 "LIM domain-binding protei... 112 6.7e-06 1
UNIPROTKB|O42252 - symbol:LDB1 "LIM domain-binding protei... 112 7.8e-06 1
UNIPROTKB|Q86U70 - symbol:LDB1 "LIM domain-binding protei... 112 7.8e-06 1
MGI|MGI:894762 - symbol:Ldb1 "LIM domain binding 1" speci... 112 7.8e-06 1
UNIPROTKB|F1N4N0 - symbol:Bt.4553 "Uncharacterized protei... 112 9.4e-06 1
UNIPROTKB|E2RH17 - symbol:LDB1 "Uncharacterized protein" ... 112 9.5e-06 1
ZFIN|ZDB-GENE-990415-135 - symbol:ldb1b "LIM-domain bindi... 105 3.8e-05 1
ZFIN|ZDB-GENE-990415-137 - symbol:ldb2b "LIM-domain bindi... 99 0.00018 1
FB|FBgn0013764 - symbol:Chi "Chip" species:7227 "Drosophi... 100 0.00026 1
UNIPROTKB|D6RAT1 - symbol:LDB2 "LIM domain-binding protei... 86 0.00080 1
>UNIPROTKB|G5E9Y7 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 EMBL:CH471069 PANTHER:PTHR10378 UniGene:Hs.714330
HGNC:HGNC:6533 ChiTaRS:LDB2 EMBL:AC005690 EMBL:AC097515
EMBL:AC104656 EMBL:AC105353 EMBL:AC106894 ProteinModelPortal:G5E9Y7
SMR:G5E9Y7 Ensembl:ENST00000515064 ArrayExpress:G5E9Y7 Bgee:G5E9Y7
Uniprot:G5E9Y7
Length = 371
Score = 120 (47.3 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
RRHTPY QP+YR+YE+NKRLQ RTE +LW
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50
Score = 30 (15.6 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 39 TKVDESMYDCMLLCDELPDYHEA 61
T+++ + YD D+ D++ +
Sbjct: 319 TRLENTQYDAANGMDDEEDFNNS 341
>UNIPROTKB|O43679 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0001942 "hair follicle development" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0010669 "epithelial structure maintenance" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0035019 "somatic
stem cell maintenance" evidence=IEA] [GO:0044089 "positive
regulation of cellular component biogenesis" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030274 "LIM domain
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR002691 GO:GO:0005634 GO:GO:0045944 GO:GO:0005667
GO:GO:0001942 GO:GO:0003712 GO:GO:0035019 GO:GO:0030274
GO:GO:0010669 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 OrthoDB:EOG4XWFXV PANTHER:PTHR10378 CTD:9079
EMBL:AF068651 EMBL:AF052389 EMBL:AF064492 EMBL:AF064493
EMBL:AF047337 EMBL:BC034019 IPI:IPI00014634 IPI:IPI00790687
IPI:IPI00855748 RefSeq:NP_001124306.1 RefSeq:NP_001281.1
UniGene:Hs.714330 ProteinModelPortal:O43679 SMR:O43679
DIP:DIP-24262N IntAct:O43679 MINT:MINT-233497 STRING:O43679
PhosphoSite:O43679 PRIDE:O43679 DNASU:9079 Ensembl:ENST00000304523
Ensembl:ENST00000441778 GeneID:9079 KEGG:hsa:9079 UCSC:uc003goz.3
UCSC:uc003gpa.3 UCSC:uc003gpb.3 GeneCards:GC04M016445
HGNC:HGNC:6533 HPA:CAB017544 MIM:603450 neXtProt:NX_O43679
PharmGKB:PA30317 InParanoid:O43679 OMA:LGNSSPW PhylomeDB:O43679
ChiTaRS:LDB2 GenomeRNAi:9079 NextBio:34017 ArrayExpress:O43679
Bgee:O43679 CleanEx:HS_LDB2 Genevestigator:O43679
GermOnline:ENSG00000169744 GO:GO:0044089 Uniprot:O43679
Length = 373
Score = 120 (47.3 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
RRHTPY QP+YR+YE+NKRLQ RTE +LW
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50
Score = 30 (15.6 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 39 TKVDESMYDCMLLCDELPDYHEA 61
T+++ + YD D+ D++ +
Sbjct: 321 TRLENTQYDAANGMDDEEDFNNS 343
>MGI|MGI:894670 [details] [associations]
symbol:Ldb2 "LIM domain binding 2" species:10090 "Mus
musculus" [GO:0000989 "transcription factor binding transcription
factor activity" evidence=IPI] [GO:0001942 "hair follicle
development" evidence=IGI] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005667 "transcription
factor complex" evidence=IDA] [GO:0010669 "epithelial structure
maintenance" evidence=IGI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0035019 "somatic stem cell maintenance" evidence=IGI]
[GO:0044089 "positive regulation of cellular component biogenesis"
evidence=IGI] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI] InterPro:IPR002691
MGI:MGI:894670 GO:GO:0045944 GO:GO:0005667 GO:GO:0001942
GO:GO:0003712 GO:GO:0035019 GO:GO:0000989 GO:GO:0030274
GO:GO:0010669 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 OrthoDB:EOG4XWFXV PANTHER:PTHR10378
GeneTree:ENSGT00390000005639 CTD:9079 OMA:LGNSSPW ChiTaRS:LDB2
GO:GO:0044089 EMBL:U89487 EMBL:U89489 EMBL:AK147160 EMBL:AK146860
EMBL:BC079611 IPI:IPI00116609 IPI:IPI00607962 IPI:IPI00798495
RefSeq:NP_001070866.1 RefSeq:NP_034828.3 UniGene:Mm.25785
ProteinModelPortal:O55203 SMR:O55203 DIP:DIP-46444N STRING:O55203
PhosphoSite:O55203 PRIDE:O55203 Ensembl:ENSMUST00000070748
GeneID:16826 KEGG:mmu:16826 UCSC:uc008xis.1 UCSC:uc008xit.1
UCSC:uc008xiu.1 InParanoid:O55203 NextBio:290728 Bgee:O55203
CleanEx:MM_LDB2 Genevestigator:O55203 GermOnline:ENSMUSG00000039706
Uniprot:O55203
Length = 373
Score = 120 (47.3 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
RRHTPY QP+YR+YE+NKRLQ RTE +LW
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50
Score = 30 (15.6 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 39 TKVDESMYDCMLLCDELPDYHEA 61
T+++ + YD D+ D++ +
Sbjct: 321 TRLENTQYDAANGMDDEEDFNNS 343
>UNIPROTKB|F1PRG9 [details] [associations]
symbol:LDB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003712 "transcription
cofactor activity" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
OMA:LGNSSPW EMBL:AAEX03002466 EMBL:AAEX03002467 EMBL:AAEX03002468
Ensembl:ENSCAFT00000024036 Uniprot:F1PRG9
Length = 372
Score = 120 (47.3 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
RRHTPY QP+YR+YE+NKRLQ RTE +LW
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50
Score = 29 (15.3 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 39 TKVDESMYDCMLLCDELPDYH 59
T+++ + YD D+ D++
Sbjct: 320 TRLENTQYDAANGVDDEEDFN 340
>UNIPROTKB|F6R129 [details] [associations]
symbol:LDB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0044089 "positive
regulation of cellular component biogenesis" evidence=IEA]
[GO:0035019 "somatic stem cell maintenance" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0010669 "epithelial
structure maintenance" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0001942 "hair follicle
development" evidence=IEA] [GO:0030274 "LIM domain binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] InterPro:IPR002691 GO:GO:0045944 GO:GO:0005667
GO:GO:0001942 GO:GO:0003712 GO:GO:0035019 GO:GO:0010669
PANTHER:PTHR10378 GeneTree:ENSGT00390000005639 CTD:9079 OMA:LGNSSPW
GO:GO:0044089 EMBL:DAAA02018776 EMBL:DAAA02018777 EMBL:DAAA02018778
EMBL:DAAA02018779 EMBL:DAAA02018780 EMBL:DAAA02018781
EMBL:DAAA02018782 EMBL:DAAA02018783 EMBL:DAAA02018784
EMBL:DAAA02018785 EMBL:DAAA02018786 EMBL:DAAA02018787
EMBL:DAAA02018788 EMBL:DAAA02018789 EMBL:DAAA02018790
EMBL:DAAA02018791 EMBL:DAAA02018792 IPI:IPI00742582
RefSeq:NP_001040076.2 UniGene:Bt.11446 Ensembl:ENSBTAT00000018687
GeneID:617976 KEGG:bta:617976 NextBio:20900928 Uniprot:F6R129
Length = 370
Score = 120 (47.3 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
RRHTPY QP+YR+YE+NKRLQ RTE +LW
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50
Score = 28 (14.9 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 39 TKVDESMYDCMLLCDELPDY 58
T+++ + YD D+ D+
Sbjct: 318 TRLENTQYDAANGMDDEEDF 337
>UNIPROTKB|E7EX95 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 HGNC:HGNC:6533 ChiTaRS:LDB2
EMBL:AC005690 EMBL:AC097515 EMBL:AC104656 EMBL:AC105353
EMBL:AC106894 IPI:IPI00967706 Ensembl:ENST00000508918
ArrayExpress:E7EX95 Bgee:E7EX95 Uniprot:E7EX95
Length = 110
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
RRHTPY QP+YR+YE+NKRLQ RTE +LW
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50
>UNIPROTKB|E9PGU0 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 HGNC:HGNC:6533 ChiTaRS:LDB2
EMBL:AC005690 EMBL:AC097515 EMBL:AC104656 EMBL:AC105353
EMBL:AC106894 IPI:IPI00965057 Ensembl:ENST00000512345
ArrayExpress:E9PGU0 Bgee:E9PGU0 Uniprot:E9PGU0
Length = 106
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
RRHTPY QP+YR+YE+NKRLQ RTE +LW
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50
>UNIPROTKB|F1NGI1 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0001942 "hair follicle development" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0010669
"epithelial structure maintenance" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IEA] [GO:0035019 "somatic stem cell
maintenance" evidence=IEA] [GO:0044089 "positive regulation of
cellular component biogenesis" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR002691 GO:GO:0045944 GO:GO:0005667
GO:GO:0003712 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
IPI:IPI00586244 OMA:LGNSSPW GO:GO:0044089 EMBL:AADN02015128
EMBL:AADN02015129 EMBL:AADN02015130 EMBL:AADN02015131
EMBL:AADN02015132 EMBL:AADN02015133 EMBL:AADN02015134
EMBL:AADN02015135 Ensembl:ENSGALT00000023380 ArrayExpress:F1NGI1
Uniprot:F1NGI1
Length = 371
Score = 115 (45.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
RRHTPY QP+YR+YE+NKRLQ R+E +LW
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQARSEDSDNLW 50
Score = 30 (15.6 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 39 TKVDESMYDCMLLCDELPDYHEA 61
T+++ + YD D+ D++ +
Sbjct: 319 TRLENTQYDAANGMDDEEDFNNS 341
>UNIPROTKB|Q9W676 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030274 "LIM
domain binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002691 GO:GO:0005634 GO:GO:0003712
GO:GO:0030274 HSSP:P70662 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 PANTHER:PTHR10378 EMBL:AF069990 EMBL:AB250386
IPI:IPI00586244 IPI:IPI00775747 RefSeq:NP_990160.1 UniGene:Gga.3673
ProteinModelPortal:Q9W676 SMR:Q9W676 GeneID:395631 KEGG:gga:395631
CTD:9079 InParanoid:Q9W676 NextBio:20815704 Uniprot:Q9W676
Length = 371
Score = 115 (45.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
RRHTPY QP+YR+YE+NKRLQ R+E +LW
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQARSEDSDNLW 50
Score = 30 (15.6 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 39 TKVDESMYDCMLLCDELPDYHEA 61
T+++ + YD D+ D++ +
Sbjct: 319 TRLENTQYDAANGMDDEEDFNNS 341
>UNIPROTKB|Q1EQW7 [details] [associations]
symbol:ldb2 "LIM domain-binding protein 2" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0030274 "LIM domain binding"
evidence=ISS] InterPro:IPR002691 GO:GO:0005634 GO:GO:0003712
GO:GO:0030274 HOVERGEN:HBG000135 PANTHER:PTHR10378 CTD:9079
EMBL:AB250388 EMBL:AB250389 RefSeq:NP_001089184.1 UniGene:Xl.57032
ProteinModelPortal:Q1EQW7 SMR:Q1EQW7 GeneID:734228 KEGG:xla:734228
Xenbase:XB-GENE-490283 Uniprot:Q1EQW7
Length = 398
Score = 114 (45.2 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 21/32 (65%), Positives = 25/32 (78%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
RRH PY QP+YR+YE+NKRLQ RTE +LW
Sbjct: 19 RRHAPYMVQPEYRIYEMNKRLQTRTEDSDNLW 50
Score = 30 (15.6 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 39 TKVDESMYDCMLLCDELPDYHEA 61
T+++ + YD D+ D++ +
Sbjct: 346 TRLENTQYDAANGMDDEEDFNSS 368
>UNIPROTKB|E9PFI4 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 HGNC:HGNC:6533 ChiTaRS:LDB2
EMBL:AC005690 EMBL:AC097515 EMBL:AC104656 EMBL:AC105353
EMBL:AC106894 IPI:IPI00922054 Ensembl:ENST00000502640
UCSC:uc010iee.3 ArrayExpress:E9PFI4 Bgee:E9PFI4 Uniprot:E9PFI4
Length = 313
Score = 120 (47.3 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
RRHTPY QP+YR+YE+NKRLQ RTE +LW
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLW 50
>ZFIN|ZDB-GENE-990415-136 [details] [associations]
symbol:ldb2a "LIM-domain binding factor 2a"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030274 "LIM domain binding" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] InterPro:IPR002691
ZFIN:ZDB-GENE-990415-136 GO:GO:0005634 GO:GO:0003712
PANTHER:PTHR10378 GeneTree:ENSGT00390000005639 EMBL:CU855906
EMBL:CU896556 IPI:IPI01024258 Ensembl:ENSDART00000149571
ArrayExpress:F8W338 Bgee:F8W338 Uniprot:F8W338
Length = 439
Score = 119 (46.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
RRH+PY QP+YR+YE+NKRLQ RTE SLW
Sbjct: 73 RRHSPYMVQPEYRIYEMNKRLQSRTEESDSLW 104
>UNIPROTKB|F1NRA7 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
EMBL:AADN02015128 EMBL:AADN02015129 EMBL:AADN02015130
EMBL:AADN02015131 EMBL:AADN02015132 EMBL:AADN02015133
EMBL:AADN02015134 EMBL:AADN02015135 IPI:IPI01017131
Ensembl:ENSGALT00000037306 ArrayExpress:F1NRA7 Uniprot:F1NRA7
Length = 330
Score = 115 (45.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTE---SLW 33
RRHTPY QP+YR+YE+NKRLQ R+E +LW
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQARSEDSDNLW 50
>UNIPROTKB|F1NI08 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
EMBL:AADN02046426 EMBL:AADN02046427 EMBL:AADN02046428
EMBL:AADN02046429 EMBL:AADN02048363 EMBL:AADN02048364
IPI:IPI01017181 Ensembl:ENSGALT00000039411 Uniprot:F1NI08
Length = 323
Score = 112 (44.5 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
G+ RHTPY Q DYR++ELNKRLQ TE +LW + T+ E D ML
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFED--DAML 68
>UNIPROTKB|F1NI21 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
EMBL:AADN02046426 EMBL:AADN02046427 EMBL:AADN02046428
EMBL:AADN02046429 EMBL:AADN02048363 EMBL:AADN02048364
IPI:IPI01017094 Ensembl:ENSGALT00000039405 Uniprot:F1NI21
Length = 366
Score = 112 (44.5 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
G+ RHTPY Q DYR++ELNKRLQ TE +LW + T+ E D ML
Sbjct: 13 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFED--DAML 61
>UNIPROTKB|F1NKP2 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030274 "LIM
domain binding" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 IPI:IPI00594578 PANTHER:PTHR10378
GeneTree:ENSGT00390000005639 EMBL:AADN02046426 EMBL:AADN02046427
EMBL:AADN02046428 EMBL:AADN02046429 EMBL:AADN02048363
EMBL:AADN02048364 Ensembl:ENSGALT00000012362 Uniprot:F1NKP2
Length = 368
Score = 112 (44.5 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
G+ RHTPY Q DYR++ELNKRLQ TE +LW + T+ E D ML
Sbjct: 13 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFED--DAML 61
>UNIPROTKB|F2Z5G6 [details] [associations]
symbol:LDB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060322 "head development" evidence=IEA] [GO:0046985
"positive regulation of hemoglobin biosynthetic process"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045785 "positive regulation of cell adhesion" evidence=IEA]
[GO:0045647 "negative regulation of erythrocyte differentiation"
evidence=IEA] [GO:0043973 "histone H3-K4 acetylation" evidence=IEA]
[GO:0043621 "protein self-association" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA] [GO:0035019
"somatic stem cell maintenance" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0022607 "cellular component assembly" evidence=IEA] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0016055 "Wnt
receptor signaling pathway" evidence=IEA] [GO:0010669 "epithelial
structure maintenance" evidence=IEA] [GO:0009948
"anterior/posterior axis specification" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005911 "cell-cell junction" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0001942 "hair follicle development"
evidence=IEA] [GO:0001702 "gastrulation with mouth forming second"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0000972
"transcription-dependent tethering of RNA polymerase II gene DNA at
nuclear periphery" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] InterPro:IPR002691 GO:GO:0045892 GO:GO:0016055
GO:GO:0045944 GO:GO:0003682 GO:GO:0005911 GO:GO:0005667
GO:GO:0000790 GO:GO:0006366 GO:GO:0001942 GO:GO:0001702
GO:GO:0045785 GO:GO:0003712 GO:GO:0035019 GO:GO:0009948
GO:GO:0001158 GO:GO:0021702 GO:GO:0060322 GO:GO:0010669
GO:GO:0032784 GO:GO:0045647 GO:GO:0046985 PANTHER:PTHR10378
OMA:GSNSPWN GO:GO:0022607 GO:GO:0043973 GO:GO:0000972
GeneTree:ENSGT00390000005639 EMBL:CT737175
ProteinModelPortal:F2Z5G6 SMR:F2Z5G6 Ensembl:ENSSSCT00000011567
Uniprot:F2Z5G6
Length = 373
Score = 112 (44.5 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
G+ RHTPY Q DYR++ELNKRLQ TE +LW + T+ E D ML
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFED--DAML 68
>UNIPROTKB|Q6NVL6 [details] [associations]
symbol:ldb1 "LIM domain-binding protein 1" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0030274 "LIM domain binding" evidence=ISS] [GO:0042803 "protein
homodimerization activity" evidence=ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR002691
GO:GO:0007275 GO:GO:0005634 GO:GO:0042803 GO:GO:0045944
GO:GO:0003712 GO:GO:0030274 HSSP:P70662 CTD:8861 eggNOG:NOG282114
HOGENOM:HOG000030908 HOVERGEN:HBG000135 KO:K15617 OrthoDB:EOG4XWFXV
PANTHER:PTHR10378 GeneTree:ENSGT00390000005639 EMBL:BC067989
RefSeq:NP_998843.1 UniGene:Str.5983 ProteinModelPortal:Q6NVL6
SMR:Q6NVL6 STRING:Q6NVL6 Ensembl:ENSXETT00000003881 GeneID:407886
KEGG:xtr:407886 Xenbase:XB-GENE-493239 Bgee:Q6NVL6 Uniprot:Q6NVL6
Length = 373
Score = 112 (44.5 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
G+ RHTPY Q DYR++ELNKRLQ TE +LW + T+ E D ML
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFED--DAML 68
>UNIPROTKB|P70060 [details] [associations]
symbol:ldb1 "LIM domain-binding protein 1" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0030274 "LIM domain binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] InterPro:IPR002691
GO:GO:0007275 GO:GO:0005634 GO:GO:0042803 GO:GO:0045944
GO:GO:0003712 CTD:8861 HOVERGEN:HBG000135 KO:K15617
PANTHER:PTHR10378 EMBL:U74360 EMBL:AB250387 EMBL:BC044043
RefSeq:NP_001080549.1 RefSeq:NP_001090450.1 UniGene:Xl.4461
UniGene:Xl.76023 ProteinModelPortal:P70060 SMR:P70060 GeneID:380241
GeneID:779363 KEGG:xla:380241 KEGG:xla:779363 CTD:779363
Xenbase:XB-GENE-866237 Uniprot:P70060
Length = 375
Score = 112 (44.5 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
G+ RHTPY Q DYR++ELNKRLQ TE +LW + T+ E D ML
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFED--DAML 68
>RGD|1310359 [details] [associations]
symbol:Ldb1 "LIM domain binding 1" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA;ISO]
[GO:0000972 "transcription-dependent tethering of RNA polymerase II
gene DNA at nuclear periphery" evidence=IEA;ISO] [GO:0000989
"transcription factor binding transcription factor activity"
evidence=ISO] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA;ISO] [GO:0001158
"enhancer sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001702 "gastrulation with mouth forming second"
evidence=IEA;ISO] [GO:0001942 "hair follicle development"
evidence=IEA;ISO] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005667 "transcription factor complex"
evidence=IEA;ISO] [GO:0005911 "cell-cell junction"
evidence=IEA;ISO] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;ISO] [GO:0009948 "anterior/posterior axis
specification" evidence=IEA;ISO] [GO:0010669 "epithelial structure
maintenance" evidence=IEA;ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IEA;ISO] [GO:0021549 "cerebellum development"
evidence=ISO] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA;ISO] [GO:0022607 "cellular component
assembly" evidence=IEA;ISO] [GO:0030274 "LIM domain binding"
evidence=IEA;ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA;ISO] [GO:0035019 "somatic
stem cell maintenance" evidence=IEA;ISO] [GO:0042803 "protein
homodimerization activity" evidence=IEA;ISO] [GO:0043234 "protein
complex" evidence=ISO] [GO:0043621 "protein self-association"
evidence=IEA;ISO] [GO:0043973 "histone H3-K4 acetylation"
evidence=IEA;ISO] [GO:0044451 "nucleoplasm part" evidence=ISO]
[GO:0045647 "negative regulation of erythrocyte differentiation"
evidence=IEA;ISO] [GO:0045785 "positive regulation of cell
adhesion" evidence=IEA;ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA;ISO] [GO:0046985 "positive regulation of
hemoglobin biosynthetic process" evidence=IEA;ISO] [GO:0060322
"head development" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=ISO] InterPro:IPR002691 RGD:1310359 GO:GO:0005634
GO:GO:0003712 EMBL:CH473986 CTD:8861 KO:K15617 PANTHER:PTHR10378
GeneTree:ENSGT00390000005639 IPI:IPI00951331 RefSeq:NP_001101071.1
UniGene:Rn.102427 Ensembl:ENSRNOT00000040904 GeneID:309447
KEGG:rno:309447 UCSC:RGD:1310359 NextBio:660792 Uniprot:D3ZT89
Length = 375
Score = 112 (44.5 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
G+ RHTPY Q DYR++ELNKRLQ TE +LW + T+ E D ML
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFED--DAML 68
>ZFIN|ZDB-GENE-990415-138 [details] [associations]
symbol:ldb1a "LIM-domain binding factor 1a"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0030274 "LIM domain binding" evidence=IEA;ISS;IDA] [GO:0003712
"transcription cofactor activity" evidence=IEA] [GO:0046983
"protein dimerization activity" evidence=IDA] InterPro:IPR002691
ZFIN:ZDB-GENE-990415-138 GO:GO:0005634 GO:GO:0046983 GO:GO:0003712
GO:GO:0030274 PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
EMBL:CU640488 IPI:IPI00509348 Ensembl:ENSDART00000126845
ArrayExpress:F1R491 Bgee:F1R491 Uniprot:F1R491
Length = 375
Score = 112 (44.5 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
G+ RHTPY Q DYR++ELNKRLQ TE +LW + T+ E D ML
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEDCDNLWWDAFTTEFFED--DAML 68
>UNIPROTKB|F1NI09 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000972 "transcription-dependent tethering of RNA polymerase II
gene DNA at nuclear periphery" evidence=IEA] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0001702 "gastrulation with mouth forming second"
evidence=IEA] [GO:0001942 "hair follicle development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005911 "cell-cell
junction" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0009948
"anterior/posterior axis specification" evidence=IEA] [GO:0010669
"epithelial structure maintenance" evidence=IEA] [GO:0016055 "Wnt
receptor signaling pathway" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0022607 "cellular component
assembly" evidence=IEA] [GO:0030274 "LIM domain binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0035019 "somatic stem
cell maintenance" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0043621 "protein
self-association" evidence=IEA] [GO:0043973 "histone H3-K4
acetylation" evidence=IEA] [GO:0045647 "negative regulation of
erythrocyte differentiation" evidence=IEA] [GO:0045785 "positive
regulation of cell adhesion" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0046985 "positive
regulation of hemoglobin biosynthetic process" evidence=IEA]
[GO:0060322 "head development" evidence=IEA] InterPro:IPR002691
GO:GO:0045892 GO:GO:0016055 GO:GO:0045944 GO:GO:0003682
GO:GO:0005911 GO:GO:0005667 GO:GO:0000790 GO:GO:0006366
GO:GO:0045785 GO:GO:0003712 GO:GO:0001158 GO:GO:0032784
GO:GO:0045647 GO:GO:0046985 PANTHER:PTHR10378 OMA:GSNSPWN
GO:GO:0022607 GO:GO:0043973 GO:GO:0000972
GeneTree:ENSGT00390000005639 EMBL:AADN02046426 EMBL:AADN02046427
EMBL:AADN02046428 EMBL:AADN02046429 EMBL:AADN02048363
EMBL:AADN02048364 IPI:IPI00818108 Ensembl:ENSGALT00000039410
Uniprot:F1NI09
Length = 377
Score = 112 (44.5 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
G+ RHTPY Q DYR++ELNKRLQ TE +LW + T+ E D ML
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFED--DAML 68
>UNIPROTKB|O42252 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9031
"Gallus gallus" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0043234 "protein complex" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0030182 "neuron
differentiation" evidence=ISS] [GO:0030274 "LIM domain binding"
evidence=ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISS] [GO:0045647 "negative regulation of erythrocyte
differentiation" evidence=ISS] [GO:0009948 "anterior/posterior axis
specification" evidence=ISS] [GO:0016055 "Wnt receptor signaling
pathway" evidence=ISS] InterPro:IPR002691 GO:GO:0005634
GO:GO:0043234 GO:GO:0042803 GO:GO:0016055 GO:GO:0030182
GO:GO:0003712 GO:GO:0009948 GO:GO:0030274 GO:GO:0045647
EMBL:AF026037 EMBL:AF026038 EMBL:AF069991 EMBL:AB250385
IPI:IPI00594578 IPI:IPI00821941 IPI:IPI00822885 IPI:IPI00845165
RefSeq:NP_990401.1 UniGene:Gga.377 HSSP:P70662
ProteinModelPortal:O42252 SMR:O42252 PRIDE:O42252 GeneID:395952
KEGG:gga:395952 CTD:8861 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 KO:K15617 OrthoDB:EOG4XWFXV NextBio:20816017
PANTHER:PTHR10378 Uniprot:O42252
Length = 411
Score = 112 (44.5 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
G+ RHTPY Q DYR++ELNKRLQ TE +LW + T+ E D ML
Sbjct: 56 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFED--DAML 104
>UNIPROTKB|Q86U70 [details] [associations]
symbol:LDB1 "LIM domain-binding protein 1" species:9606
"Homo sapiens" [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0001702 "gastrulation with mouth forming second"
evidence=IEA] [GO:0001942 "hair follicle development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005911
"cell-cell junction" evidence=IEA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0009948
"anterior/posterior axis specification" evidence=IEA] [GO:0010669
"epithelial structure maintenance" evidence=IEA] [GO:0016055 "Wnt
receptor signaling pathway" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0022607 "cellular component
assembly" evidence=IEA] [GO:0035019 "somatic stem cell maintenance"
evidence=IEA] [GO:0043621 "protein self-association" evidence=IEA]
[GO:0045785 "positive regulation of cell adhesion" evidence=IEA]
[GO:0060322 "head development" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=NAS] [GO:0006351
"transcription, DNA-dependent" evidence=NAS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISS] [GO:0030182 "neuron
differentiation" evidence=ISS] [GO:0030274 "LIM domain binding"
evidence=ISS;IPI] [GO:0042803 "protein homodimerization activity"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045647 "negative regulation of erythrocyte differentiation"
evidence=ISS] [GO:0003714 "transcription corepressor activity"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS;IMP]
[GO:0043973 "histone H3-K4 acetylation" evidence=ISS] [GO:0046985
"positive regulation of hemoglobin biosynthetic process"
evidence=ISS] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=ISS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IPI] [GO:0000972
"transcription-dependent tethering of RNA polymerase II gene DNA at
nuclear periphery" evidence=ISS] InterPro:IPR002691 GO:GO:0003714
GO:GO:0045892 GO:GO:0042803 GO:GO:0016055 GO:GO:0030182
GO:GO:0045944 GO:GO:0006351 GO:GO:0003682 GO:GO:0005911
GO:GO:0005667 GO:GO:0000790 GO:GO:0006366 GO:GO:0001942
GO:GO:0001702 GO:GO:0045785 GO:GO:0035019 GO:GO:0009948
GO:GO:0001158 GO:GO:0021702 GO:GO:0060322 GO:GO:0030274
GO:GO:0010669 GO:GO:0032784 GO:GO:0045647 EMBL:AL500527
GO:GO:0046985 CTD:8861 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 KO:K15617 OrthoDB:EOG4XWFXV PANTHER:PTHR10378
EMBL:AF068652 EMBL:AJ243098 EMBL:AB016485 EMBL:AB250384
EMBL:AF064491 EMBL:BT007054 EMBL:AK300588 EMBL:BC000482
EMBL:BC009246 IPI:IPI00428954 IPI:IPI00760574 IPI:IPI00856078
RefSeq:NP_001106878.1 RefSeq:NP_003884.1 UniGene:Hs.454418 PDB:2XJY
PDB:2XJZ PDBsum:2XJY PDBsum:2XJZ ProteinModelPortal:Q86U70
SMR:Q86U70 DIP:DIP-31826N IntAct:Q86U70 MINT:MINT-233462
STRING:Q86U70 PhosphoSite:Q86U70 DMDM:158518615 PaxDb:Q86U70
PRIDE:Q86U70 DNASU:8861 Ensembl:ENST00000361198
Ensembl:ENST00000425280 GeneID:8861 KEGG:hsa:8861 UCSC:uc001kuk.4
UCSC:uc001kul.3 GeneCards:GC10M103857 H-InvDB:HIX0009148
HGNC:HGNC:6532 HPA:HPA034488 MIM:603451 neXtProt:NX_Q86U70
PharmGKB:PA30316 InParanoid:Q86U70 OMA:GSNSPWN
EvolutionaryTrace:Q86U70 GenomeRNAi:8861 NextBio:33273 Bgee:Q86U70
CleanEx:HS_LDB1 Genevestigator:Q86U70 GermOnline:ENSG00000198728
GO:GO:0022607 GO:GO:0043973 GO:GO:0000972 Uniprot:Q86U70
Length = 411
Score = 112 (44.5 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
G+ RHTPY Q DYR++ELNKRLQ TE +LW + T+ E D ML
Sbjct: 56 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFED--DAML 104
>MGI|MGI:894762 [details] [associations]
symbol:Ldb1 "LIM domain binding 1" species:10090 "Mus
musculus" [GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000972
"transcription-dependent tethering of RNA polymerase II gene DNA at
nuclear periphery" evidence=IMP] [GO:0000989 "transcription factor
binding transcription factor activity" evidence=IPI] [GO:0001102
"RNA polymerase II activating transcription factor binding"
evidence=ISO] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IDA] [GO:0001702 "gastrulation with mouth forming second"
evidence=IMP] [GO:0001942 "hair follicle development" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005667 "transcription
factor complex" evidence=ISO] [GO:0005911 "cell-cell junction"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0009948 "anterior/posterior axis
specification" evidence=IMP] [GO:0010669 "epithelial structure
maintenance" evidence=IGI] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0021549 "cerebellum development" evidence=IMP] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=IMP]
[GO:0022607 "cellular component assembly" evidence=IGI] [GO:0030274
"LIM domain binding" evidence=ISO;IDA;IPI] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IMP]
[GO:0035019 "somatic stem cell maintenance" evidence=IGI]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0043234 "protein complex" evidence=IDA;IPI] [GO:0043621
"protein self-association" evidence=IPI] [GO:0043973 "histone H3-K4
acetylation" evidence=IMP] [GO:0044451 "nucleoplasm part"
evidence=IDA] [GO:0045647 "negative regulation of erythrocyte
differentiation" evidence=IMP] [GO:0045785 "positive regulation of
cell adhesion" evidence=IGI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO;IGI;IMP] [GO:0046985 "positive regulation of
hemoglobin biosynthetic process" evidence=IMP] [GO:0060319
"primitive erythrocyte differentiation" evidence=TAS] [GO:0060322
"head development" evidence=IGI] InterPro:IPR002691 MGI:MGI:894762
GO:GO:0045892 GO:GO:0043234 GO:GO:0042803 GO:GO:0016055
GO:GO:0045944 GO:GO:0003682 GO:GO:0005911 GO:GO:0005667
GO:GO:0000790 GO:GO:0006366 GO:GO:0001942 GO:GO:0001702
GO:GO:0045785 GO:GO:0003712 GO:GO:0035019 GO:GO:0009948
GO:GO:0001158 GO:GO:0000989 GO:GO:0021702 GO:GO:0060322
GO:GO:0030274 GO:GO:0010669 GO:GO:0032784 GO:GO:0060319
GO:GO:0045647 PDB:2L6Y PDB:2L6Z PDBsum:2L6Y PDBsum:2L6Z
GO:GO:0046985 CTD:8861 eggNOG:NOG282114 HOGENOM:HOG000030908
HOVERGEN:HBG000135 KO:K15617 OrthoDB:EOG4XWFXV PANTHER:PTHR10378
OMA:GSNSPWN GO:GO:0022607 GO:GO:0043973 GO:GO:0000972 EMBL:U70375
EMBL:U69270 EMBL:U89488 EMBL:AF030333 EMBL:AF024524 EMBL:AB250383
EMBL:BC013624 IPI:IPI00111789 IPI:IPI00624850 IPI:IPI00762229
RefSeq:NP_001106879.1 RefSeq:NP_034827.1 UniGene:Mm.327442 PDB:1J2O
PDB:1M3V PDB:1RUT PDB:2JTN PDB:2LXD PDBsum:1J2O PDBsum:1M3V
PDBsum:1RUT PDBsum:2JTN PDBsum:2LXD ProteinModelPortal:P70662
SMR:P70662 IntAct:P70662 MINT:MINT-2779250 STRING:P70662
PhosphoSite:P70662 PRIDE:P70662 DNASU:16825
Ensembl:ENSMUST00000026252 Ensembl:ENSMUST00000056931
Ensembl:ENSMUST00000137771 Ensembl:ENSMUST00000156585 GeneID:16825
KEGG:mmu:16825 UCSC:uc008hrz.1 UCSC:uc008hsa.1 UCSC:uc012bmr.1
GeneTree:ENSGT00390000005639 InParanoid:P70662 ChiTaRS:LDB1
EvolutionaryTrace:P70662 NextBio:290724 Bgee:P70662 CleanEx:MM_LDB1
Genevestigator:P70662 GermOnline:ENSMUSG00000025223 GO:GO:0044451
Uniprot:P70662
Length = 411
Score = 112 (44.5 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
G+ RHTPY Q DYR++ELNKRLQ TE +LW + T+ E D ML
Sbjct: 56 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFED--DAML 104
>UNIPROTKB|F1N4N0 [details] [associations]
symbol:Bt.4553 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060322 "head development" evidence=IEA] [GO:0046985
"positive regulation of hemoglobin biosynthetic process"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045785 "positive regulation of cell adhesion" evidence=IEA]
[GO:0045647 "negative regulation of erythrocyte differentiation"
evidence=IEA] [GO:0043973 "histone H3-K4 acetylation" evidence=IEA]
[GO:0043621 "protein self-association" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA] [GO:0035019
"somatic stem cell maintenance" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0022607 "cellular component assembly" evidence=IEA] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0016055 "Wnt
receptor signaling pathway" evidence=IEA] [GO:0010669 "epithelial
structure maintenance" evidence=IEA] [GO:0009948
"anterior/posterior axis specification" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005911 "cell-cell junction" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0001942 "hair follicle development"
evidence=IEA] [GO:0001702 "gastrulation with mouth forming second"
evidence=IEA] [GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0000972
"transcription-dependent tethering of RNA polymerase II gene DNA at
nuclear periphery" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] InterPro:IPR002691 GO:GO:0045892 GO:GO:0016055
GO:GO:0045944 GO:GO:0003682 GO:GO:0005911 GO:GO:0005667
GO:GO:0000790 GO:GO:0006366 GO:GO:0001942 GO:GO:0001702
GO:GO:0045785 GO:GO:0003712 GO:GO:0035019 GO:GO:0009948
GO:GO:0001158 GO:GO:0021702 GO:GO:0060322 GO:GO:0010669
GO:GO:0032784 GO:GO:0045647 GO:GO:0046985 PANTHER:PTHR10378
OMA:GSNSPWN GO:GO:0022607 GO:GO:0043973 GO:GO:0000972
GeneTree:ENSGT00390000005639 EMBL:DAAA02058995 EMBL:DAAA02058997
EMBL:DAAA02058996 IPI:IPI00694995 Ensembl:ENSBTAT00000007599
Uniprot:F1N4N0
Length = 467
Score = 112 (44.5 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
G+ RHTPY Q DYR++ELNKRLQ TE +LW + T+ E D ML
Sbjct: 112 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFED--DAML 160
>UNIPROTKB|E2RH17 [details] [associations]
symbol:LDB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003712 "transcription
cofactor activity" evidence=IEA] InterPro:IPR002691 GO:GO:0005634
GO:GO:0003712 PANTHER:PTHR10378 OMA:GSNSPWN
GeneTree:ENSGT00390000005639 EMBL:AAEX03015485
Ensembl:ENSCAFT00000015927 Uniprot:E2RH17
Length = 468
Score = 112 (44.5 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDESMYDCML 50
G+ RHTPY Q DYR++ELNKRLQ TE +LW + T+ E D ML
Sbjct: 113 GIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFED--DAML 161
>ZFIN|ZDB-GENE-990415-135 [details] [associations]
symbol:ldb1b "LIM-domain binding factor 1b"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030274 "LIM domain binding" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] InterPro:IPR002691
ZFIN:ZDB-GENE-990415-135 GO:GO:0005634 GO:GO:0003712
HOVERGEN:HBG000135 KO:K15617 PANTHER:PTHR10378 EMBL:BC110113
IPI:IPI00489118 RefSeq:NP_571388.2 UniGene:Dr.156522
UniGene:Dr.157066 UniGene:Dr.598 ProteinModelPortal:Q2YDQ6
SMR:Q2YDQ6 STRING:Q2YDQ6 GeneID:30576 KEGG:dre:30576 CTD:30576
InParanoid:Q2YDQ6 NextBio:20806946 ArrayExpress:Q2YDQ6
Uniprot:Q2YDQ6
Length = 374
Score = 105 (42.0 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE 30
G+ RHTPY Q DYR++ELNKRLQ TE
Sbjct: 20 GIGRHTPYGNQTDYRIFELNKRLQNWTE 47
>ZFIN|ZDB-GENE-990415-137 [details] [associations]
symbol:ldb2b "LIM-domain binding factor 2b"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030274 "LIM domain binding" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] InterPro:IPR002691
ZFIN:ZDB-GENE-990415-137 GO:GO:0005634 GO:GO:0003712 HSSP:P70662
eggNOG:NOG282114 HOGENOM:HOG000030908 HOVERGEN:HBG000135
OrthoDB:EOG4XWFXV PANTHER:PTHR10378 GeneTree:ENSGT00390000005639
EMBL:BX908795 EMBL:AF031377 EMBL:BC090063 IPI:IPI00501946
RefSeq:NP_571390.1 UniGene:Dr.75824 SMR:O73714
Ensembl:ENSDART00000043556 GeneID:30578 KEGG:dre:30578 CTD:30578
InParanoid:O73714 NextBio:20806948 Uniprot:O73714
Length = 384
Score = 99 (39.9 bits), Expect = 0.00018, P = 0.00018
Identities = 20/32 (62%), Positives = 23/32 (71%)
Query: 5 RRHTPYFGQPDYRVYELNKRLQQRTES---LW 33
RRH PY QP+YR++ELNKRLQ R E LW
Sbjct: 19 RRHAPYPVQPEYRMHELNKRLQSRPEDCDILW 50
>FB|FBgn0013764 [details] [associations]
symbol:Chi "Chip" species:7227 "Drosophila melanogaster"
[GO:0006351 "transcription, DNA-dependent" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007350 "blastoderm
segmentation" evidence=TAS] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0030274 "LIM domain binding"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008134 "transcription factor binding"
evidence=IPI] [GO:0001085 "RNA polymerase II transcription factor
binding" evidence=IPI] [GO:0008407 "chaeta morphogenesis"
evidence=IMP] [GO:0006911 "phagocytosis, engulfment" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0007563
"regulation of eclosion" evidence=IMP] [GO:0022416 "chaeta
development" evidence=IMP] InterPro:IPR002691 EMBL:AE013599
GO:GO:0005634 GO:GO:0007411 GO:GO:0045893 GO:GO:0006911
GO:GO:0006351 GO:GO:0003712 GO:GO:0007476 GO:GO:0008407
GO:GO:0070983 GO:GO:0007350 GO:GO:0007563 KO:K15617
PANTHER:PTHR10378 GeneTree:ENSGT00390000005639 UniGene:Dm.6987
GeneID:37837 KEGG:dme:Dmel_CG3924 CTD:37837 FlyBase:FBgn0013764
GenomeRNAi:37837 NextBio:805617 EMBL:BT125015 RefSeq:NP_726403.2
SMR:Q7KVG9 STRING:Q7KVG9 EnsemblMetazoa:FBtr0072192 UCSC:CG3924-RB
InParanoid:Q7KVG9 OMA:GHRELIP Uniprot:Q7KVG9
Length = 596
Score = 100 (40.3 bits), Expect = 0.00026, P = 0.00026
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 3 GVRRHTPYFGQPDYRVYELNKRLQQRTE---SLWSSSPETKVDE 43
G RRH YF ++RV+ELNKRLQQR E + W S T+ E
Sbjct: 224 GFRRHNSYFSHTEHRVFELNKRLQQRNEESDNCWWDSFTTEFFE 267
>UNIPROTKB|D6RAT1 [details] [associations]
symbol:LDB2 "LIM domain-binding protein 2" species:9606
"Homo sapiens" [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0030274 "LIM domain binding" evidence=IEA]
[GO:0001942 "hair follicle development" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0010669
"epithelial structure maintenance" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IEA] [GO:0035019 "somatic stem cell
maintenance" evidence=IEA] [GO:0044089 "positive regulation of
cellular component biogenesis" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR002691 GO:GO:0045944 GO:GO:0005667
GO:GO:0001942 GO:GO:0003712 GO:GO:0035019 GO:GO:0010669
HOGENOM:HOG000030908 PANTHER:PTHR10378 HGNC:HGNC:6533 ChiTaRS:LDB2
GO:GO:0044089 EMBL:AC005690 EMBL:AC097515 EMBL:AC104656
EMBL:AC105353 EMBL:AC106894 IPI:IPI00965897 Ensembl:ENST00000506732
ArrayExpress:D6RAT1 Bgee:D6RAT1 Uniprot:D6RAT1
Length = 164
Score = 86 (35.3 bits), Expect = 0.00080, P = 0.00080
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 13 QPDYRVYELNKRLQQRTE---SLW 33
QP+YR+YE+NKRLQ RTE +LW
Sbjct: 3 QPEYRIYEMNKRLQSRTEDSDNLW 26
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.436 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 61 61 0.00091 102 3 11 22 0.40 28
29 0.39 28
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 31
No. of states in DFA: 540 (57 KB)
Total size of DFA: 111 KB (2075 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.72u 0.11s 8.83t Elapsed: 00:00:01
Total cpu time: 8.72u 0.11s 8.83t Elapsed: 00:00:01
Start: Thu Aug 15 17:24:07 2013 End: Thu Aug 15 17:24:08 2013